Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40835.t1 | XP_003591157.1 | 97.8 | 90 | 0 | 1 | 1 | 88 | 1 | 90 | 3.80E-40 | 173.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40835.t1 | G7I8Q8 | 97.8 | 90 | 0 | 1 | 1 | 88 | 1 | 90 | 2.7e-40 | 173.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05142 | MS.gene40835 | 0.810905 | 9.14E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40835.t1 | MTR_1g083420 | 97.778 | 90 | 0 | 1 | 1 | 88 | 1 | 90 | 2.16e-59 | 176 |
| MS.gene40835.t1 | MTR_3g072170 | 46.575 | 73 | 38 | 1 | 8 | 79 | 1 | 73 | 1.99e-18 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40835.t1 | AT3G05550 | 83.544 | 79 | 13 | 0 | 1 | 79 | 1 | 79 | 8.00e-34 | 112 |
| MS.gene40835.t1 | AT5G27760 | 78.205 | 78 | 17 | 0 | 1 | 78 | 1 | 78 | 1.14e-31 | 106 |
| MS.gene40835.t1 | AT5G27760 | 72.222 | 54 | 15 | 0 | 1 | 54 | 1 | 54 | 6.60e-27 | 94.0 |
Find 22 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCCTGAGAGATTCGATT+TGG | 0.327609 | 1.2:+59910565 | None:intergenic |
| AAATCGAATCTCTCAGGAAA+TGG | 0.335949 | 1.2:-59910563 | MS.gene40835:CDS |
| AAAAGGCTGCAAGGGATTCT+AGG | 0.341872 | 1.2:-59908188 | MS.gene40835:CDS |
| TTGTGGCTTAGCGGTATTAC+GGG | 0.371274 | 1.2:-59910403 | MS.gene40835:CDS |
| TTTGTGGCTTAGCGGTATTA+CGG | 0.376845 | 1.2:-59910404 | MS.gene40835:CDS |
| CGGGTTCAATTGCGTACAAT+TGG | 0.387745 | 1.2:-59910384 | MS.gene40835:CDS |
| CTTACACTGGGAGCATTAGC+TGG | 0.431990 | 1.2:-59908249 | MS.gene40835:CDS |
| TTTCCTGAGAGATTCGATTT+GGG | 0.436962 | 1.2:+59910566 | None:intergenic |
| TGATCACAAGTCTGAAGAAA+AGG | 0.467242 | 1.2:-59908205 | MS.gene40835:CDS |
| TTTCTCGATTAGGTTGTTTG+TGG | 0.469318 | 1.2:-59910420 | MS.gene40835:intron |
| AATCGAATCTCTCAGGAAAT+GGG | 0.471588 | 1.2:-59910562 | MS.gene40835:CDS |
| AAACCCAAATCGAATCTCTC+AGG | 0.502597 | 1.2:-59910569 | MS.gene40835:CDS |
| GCATGCTCAAGCTCTTACAC+TGG | 0.522809 | 1.2:-59908262 | MS.gene40835:CDS |
| GTCTGAAGAAAAGGCTGCAA+GGG | 0.524443 | 1.2:-59908196 | MS.gene40835:CDS |
| TTAGGTTGTTTGTGGCTTAG+CGG | 0.532960 | 1.2:-59910412 | MS.gene40835:intron |
| GTGTTAAGATTATTCACGCC+AGG | 0.537077 | 1.2:-59910339 | MS.gene40835:intron |
| TTGGAAATTTACCAACAGTA+CGG | 0.567029 | 1.2:+59910523 | None:intergenic |
| AGCATTAGCTGGAGCTGCAG+TGG | 0.578637 | 1.2:-59908238 | MS.gene40835:CDS |
| CATGCTCAAGCTCTTACACT+GGG | 0.582325 | 1.2:-59908261 | MS.gene40835:CDS |
| GAACACAAACTCCGTACTGT+TGG | 0.585849 | 1.2:-59910534 | MS.gene40835:intron |
| AGTCTGAAGAAAAGGCTGCA+AGG | 0.589757 | 1.2:-59908197 | MS.gene40835:CDS |
| GGCGTGAATAATCTTAACAC+TGG | 0.626108 | 1.2:+59910342 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATATTATTATTATTATTT+TGG | - | chr1.2:59908742-59908761 | MS.gene40835:intron | 0.0% |
| !!! | ATTGAAAAGATATATTTTTT+TGG | - | chr1.2:59909800-59909819 | MS.gene40835:intron | 10.0% |
| !! | ATCATATCATCATAAAATAA+AGG | + | chr1.2:59908283-59908302 | None:intergenic | 15.0% |
| !! | TTTCTATACATATTATTATC+TGG | - | chr1.2:59908466-59908485 | MS.gene40835:intron | 15.0% |
| !!! | AATGAATTTTATACAGTTTA+GGG | + | chr1.2:59908630-59908649 | None:intergenic | 15.0% |
| !!! | ATTTTATGATGATATGATTT+AGG | - | chr1.2:59908285-59908304 | MS.gene40835:intron | 15.0% |
| !!! | TAATGAATTTTATACAGTTT+AGG | + | chr1.2:59908631-59908650 | None:intergenic | 15.0% |
| !! | ACAATAATAATTAACAAACC+TGG | + | chr1.2:59908446-59908465 | None:intergenic | 20.0% |
| !!! | AAATTCTTCTTTTTGGTAAA+CGG | - | chr1.2:59909212-59909231 | MS.gene40835:intron | 20.0% |
| !!! | TTCAAGTTAGAATCTATTTT+GGG | - | chr1.2:59909037-59909056 | MS.gene40835:intron | 20.0% |
| !!! | TTTAATTTGTTTTCTCGATT+AGG | - | chr1.2:59908334-59908353 | MS.gene40835:intron | 20.0% |
| !!! | TTTTTGAGTTATTTTGTATC+AGG | - | chr1.2:59910477-59910496 | MS.gene40835:intron | 20.0% |
| ! | AAATAAAAGGATACACTTCA+AGG | + | chr1.2:59909475-59909494 | None:intergenic | 25.0% |
| ! | AAGTTGCATTACTAATTAGA+TGG | - | chr1.2:59909825-59909844 | MS.gene40835:intron | 25.0% |
| ! | AATAAAAGGATACACTTCAA+GGG | + | chr1.2:59909474-59909493 | None:intergenic | 25.0% |
| ! | AGGAAATTGATTGATTGATT+TGG | + | chr1.2:59908263-59908282 | None:intergenic | 25.0% |
| ! | AGTTGCATTACTAATTAGAT+GGG | - | chr1.2:59909826-59909845 | MS.gene40835:intron | 25.0% |
| ! | ATCTGAGAATTGGAAATAAA+AGG | + | chr1.2:59909488-59909507 | None:intergenic | 25.0% |
| ! | GAACTAAAAAATTGTATTGG+AGG | - | chr1.2:59910159-59910178 | MS.gene40835:intron | 25.0% |
| ! | GAATTATCAGTATTCAATTG+AGG | + | chr1.2:59909730-59909749 | None:intergenic | 25.0% |
| ! | TAAAAAATTGTATTGGAGGA+GGG | - | chr1.2:59910163-59910182 | MS.gene40835:intron | 25.0% |
| ! | TTTAGTCCTAAGATCTTAAT+AGG | + | chr1.2:59908665-59908684 | None:intergenic | 25.0% |
| !! | AACACAATTTTTCTATGACT+TGG | + | chr1.2:59909277-59909296 | None:intergenic | 25.0% |
| !! | ACAGATTTTCATATACTTGT+GGG | - | chr1.2:59908688-59908707 | MS.gene40835:intron | 25.0% |
| !! | TATACAGTGTTGTTAAACAT+CGG | - | chr1.2:59909877-59909896 | MS.gene40835:intron | 25.0% |
| !! | TCAAGTGAACAATTAATTTG+AGG | - | chr1.2:59908972-59908991 | MS.gene40835:intron | 25.0% |
| !! | TCAAGTTAGAATCTATTTTG+GGG | - | chr1.2:59909038-59909057 | MS.gene40835:intron | 25.0% |
| !! | TTTCTTTTTCTTATTGTCCT+TGG | - | chr1.2:59909632-59909651 | MS.gene40835:intron | 25.0% |
| !!! | CTTCAAGTTAGAATCTATTT+TGG | - | chr1.2:59909036-59909055 | MS.gene40835:intron | 25.0% |
| !!! | TTTTATTTCCAATTCTCAGA+TGG | - | chr1.2:59909487-59909506 | MS.gene40835:intron | 25.0% |
| AAAGTGAAAACTACAGCAAA+AGG | + | chr1.2:59908866-59908885 | None:intergenic | 30.0% | |
| AAAGTGAAGTGGAAAATATG+AGG | + | chr1.2:59910421-59910440 | None:intergenic | 30.0% | |
| ATAAAAGGATACACTTCAAG+GGG | + | chr1.2:59909473-59909492 | None:intergenic | 30.0% | |
| ATAAACACCGATCAATTGTT+TGG | - | chr1.2:59909672-59909691 | MS.gene40835:intron | 30.0% | |
| ATAATCGCCAAACAATTGAT+CGG | + | chr1.2:59909682-59909701 | None:intergenic | 30.0% | |
| ATGACAACACTTAATCTCTT+TGG | + | chr1.2:59909782-59909801 | None:intergenic | 30.0% | |
| CTAAAAAATTGTATTGGAGG+AGG | - | chr1.2:59910162-59910181 | MS.gene40835:intron | 30.0% | |
| GGGGAACTAAAAAATTGTAT+TGG | - | chr1.2:59910156-59910175 | MS.gene40835:intron | 30.0% | |
| GTGGAAAATATGAGGAAAAA+TGG | + | chr1.2:59910316-59910335 | None:intergenic | 30.0% | |
| TCATGGCAAAATGAAAGTAA+GGG | + | chr1.2:59909440-59909459 | None:intergenic | 30.0% | |
| TGGAAGAAATAGAGGAAAAT+GGG | - | chr1.2:59910078-59910097 | MS.gene40835:intron | 30.0% | |
| TTCATGGCAAAATGAAAGTA+AGG | + | chr1.2:59909441-59909460 | None:intergenic | 30.0% | |
| TTGGAAATTTACCAACAGTA+CGG | + | chr1.2:59908244-59908263 | None:intergenic | 30.0% | |
| TTTCATATAACAAAGAGCCA+AGG | + | chr1.2:59909652-59909671 | None:intergenic | 30.0% | |
| ! | CAATTGATGTTCATTTTCAC+GGG | - | chr1.2:59909596-59909615 | MS.gene40835:intron | 30.0% |
| ! | GACAGATTTTCATATACTTG+TGG | - | chr1.2:59908687-59908706 | MS.gene40835:intron | 30.0% |
| ! | GCAATTGATGTTCATTTTCA+CGG | - | chr1.2:59909595-59909614 | MS.gene40835:intron | 30.0% |
| ! | GGGTAAGAAATTCTTCTTTT+TGG | - | chr1.2:59909205-59909224 | MS.gene40835:intron | 30.0% |
| ! | GTGTCATATTTGAAACACTA+AGG | - | chr1.2:59909994-59910013 | MS.gene40835:intron | 30.0% |
| ! | TGTTTGATTATTTTCGTTGC+AGG | - | chr1.2:59908553-59908572 | MS.gene40835:intron | 30.0% |
| !!! | ATTTTTTAGTTCCCCAAATG+AGG | + | chr1.2:59910151-59910170 | None:intergenic | 30.0% |
| !!! | TTAACACTGGTTTTCATGTT+AGG | + | chr1.2:59908412-59908431 | None:intergenic | 30.0% |
| AAATCGAATCTCTCAGGAAA+TGG | - | chr1.2:59908201-59908220 | MS.gene40835:CDS | 35.0% | |
| AACTCACAAACAAAGCCTTA+AGG | - | chr1.2:59910367-59910386 | MS.gene40835:CDS | 35.0% | |
| AAGAAATAGAGGAAAATGGG+AGG | - | chr1.2:59910081-59910100 | MS.gene40835:intron | 35.0% | |
| AATACTAAACCCTCCTCATT+TGG | - | chr1.2:59910135-59910154 | MS.gene40835:intron | 35.0% | |
| AATCGAATCTCTCAGGAAAT+GGG | - | chr1.2:59908202-59908221 | MS.gene40835:CDS | 35.0% | |
| ACAAACCCATCATATCCTTA+AGG | + | chr1.2:59910385-59910404 | None:intergenic | 35.0% | |
| ACAAAGCCTTAAGGATATGA+TGG | - | chr1.2:59910376-59910395 | MS.gene40835:CDS | 35.0% | |
| AGAAATAGAGGAAAATGGGA+GGG | - | chr1.2:59910082-59910101 | MS.gene40835:intron | 35.0% | |
| ATACTAAACCCTCCTCATTT+GGG | - | chr1.2:59910136-59910155 | MS.gene40835:intron | 35.0% | |
| ATTTCCTGAGAGATTCGATT+TGG | + | chr1.2:59908202-59908221 | None:intergenic | 35.0% | |
| CAAAGCCTTAAGGATATGAT+GGG | - | chr1.2:59910377-59910396 | MS.gene40835:CDS | 35.0% | |
| CATTACTAATTAGATGGGCA+TGG | - | chr1.2:59909831-59909850 | MS.gene40835:intron | 35.0% | |
| GAAAAATTGTGTTTCGCAAC+AGG | - | chr1.2:59909284-59909303 | MS.gene40835:intron | 35.0% | |
| GGAAAAAAGGAATGAACAAG+TGG | - | chr1.2:59910058-59910077 | MS.gene40835:intron | 35.0% | |
| GTAAACTCTGCTACATAACA+CGG | + | chr1.2:59909941-59909960 | None:intergenic | 35.0% | |
| GTCTCTCCTATTAAGATCTT+AGG | - | chr1.2:59908656-59908675 | MS.gene40835:intron | 35.0% | |
| GTGGAAGAAATAGAGGAAAA+TGG | - | chr1.2:59910077-59910096 | MS.gene40835:intron | 35.0% | |
| TAATTAGATGGGCATGGAAA+TGG | - | chr1.2:59909837-59909856 | MS.gene40835:intron | 35.0% | |
| TGAACAAGTGGAAGAAATAG+AGG | - | chr1.2:59910070-59910089 | MS.gene40835:intron | 35.0% | |
| TGATCACAAGTCTGAAGAAA+AGG | - | chr1.2:59910559-59910578 | MS.gene40835:CDS | 35.0% | |
| TGGAAATGGAGTGTAAAACA+AGG | - | chr1.2:59909851-59909870 | MS.gene40835:intron | 35.0% | |
| TTTAACGAAGCAAGTCATCA+TGG | + | chr1.2:59908842-59908861 | None:intergenic | 35.0% | |
| TTTCCAATCACGGATAATAG+CGG | + | chr1.2:59909969-59909988 | None:intergenic | 35.0% | |
| TTTCCTGAGAGATTCGATTT+GGG | + | chr1.2:59908201-59908220 | None:intergenic | 35.0% | |
| TTTGTGGAGTGGAAAATATG+AGG | + | chr1.2:59910324-59910343 | None:intergenic | 35.0% | |
| ! | ATTTTCGTTGCATTGCATGA+AGG | - | chr1.2:59908529-59908548 | MS.gene40835:intron | 35.0% |
| ! | TGTTGTTTGATTCTAGTGCA+TGG | - | chr1.2:59909527-59909546 | MS.gene40835:intron | 35.0% |
| ! | TTTCTCGATTAGGTTGTTTG+TGG | - | chr1.2:59908344-59908363 | MS.gene40835:intron | 35.0% |
| ! | TTTTCGTTGCATTGCATGAA+GGG | - | chr1.2:59908530-59908549 | MS.gene40835:intron | 35.0% |
| ! | TTTTGACGAGGGTTACTATA+GGG | - | chr1.2:59908803-59908822 | MS.gene40835:intron | 35.0% |
| !! | AGATTGTGAAGTTTTGACGA+GGG | - | chr1.2:59908792-59908811 | MS.gene40835:intron | 35.0% |
| !! | AGTTTTCACTTTTGCCTGAT+TGG | - | chr1.2:59908874-59908893 | MS.gene40835:intron | 35.0% |
| !! | TAAGGCTTTGTTTGTGAGTT+TGG | + | chr1.2:59910367-59910386 | None:intergenic | 35.0% |
| !!! | CCTTTTTAGAGTCCTCAATT+GGG | - | chr1.2:59909172-59909191 | MS.gene40835:intron | 35.0% |
| !!! | CTTTTTAGAGTCCTCAATTG+GGG | - | chr1.2:59909173-59909192 | MS.gene40835:intron | 35.0% |
| !!! | TCCTTTTTAGAGTCCTCAAT+TGG | - | chr1.2:59909171-59909190 | MS.gene40835:intron | 35.0% |
| !!! | TGCGTTGTAGAAGCTTTTTT+TGG | - | chr1.2:59909235-59909254 | MS.gene40835:intron | 35.0% |
| AAACCCAAATCGAATCTCTC+AGG | - | chr1.2:59908195-59908214 | MS.gene40835:CDS | 40.0% | |
| AAACCGCTATTATCCGTGAT+TGG | - | chr1.2:59909963-59909982 | MS.gene40835:intron | 40.0% | |
| ATGAAAGTAAGGGAGATGTG+AGG | + | chr1.2:59909430-59909449 | None:intergenic | 40.0% | |
| CAAGAGAAAACTCGAATGCA+TGG | + | chr1.2:59909404-59909423 | None:intergenic | 40.0% | |
| CAAGGGGAAACTTGAATTCA+TGG | + | chr1.2:59909457-59909476 | None:intergenic | 40.0% | |
| CAGCACAAGAAAAAGTGAAG+TGG | + | chr1.2:59910432-59910451 | None:intergenic | 40.0% | |
| CAGTATTCAATTGAGGAGAC+AGG | + | chr1.2:59909723-59909742 | None:intergenic | 40.0% | |
| CTTGATTTATTCGCTCAACC+TGG | - | chr1.2:59909347-59909366 | MS.gene40835:intron | 40.0% | |
| GAAATAGAGGAAAATGGGAG+GGG | - | chr1.2:59910083-59910102 | MS.gene40835:intron | 40.0% | |
| GCATGGCAAAACGAAAGTAA+GGG | + | chr1.2:59909387-59909406 | None:intergenic | 40.0% | |
| GGCGTGAATAATCTTAACAC+TGG | + | chr1.2:59908425-59908444 | None:intergenic | 40.0% | |
| GTGTTAAGATTATTCACGCC+AGG | - | chr1.2:59908425-59908444 | MS.gene40835:intron | 40.0% | |
| TACTAAACCCTCCTCATTTG+GGG | - | chr1.2:59910137-59910156 | MS.gene40835:intron | 40.0% | |
| TCCAATTCTCAGATGGCAAT+TGG | - | chr1.2:59909494-59909513 | MS.gene40835:intron | 40.0% | |
| TCCAATTGCCATCTGAGAAT+TGG | + | chr1.2:59909498-59909517 | None:intergenic | 40.0% | |
| TGCATGGCAAAACGAAAGTA+AGG | + | chr1.2:59909388-59909407 | None:intergenic | 40.0% | |
| TTATCCGTGATTGGAAACAC+TGG | - | chr1.2:59909972-59909991 | MS.gene40835:intron | 40.0% | |
| TTTGTGGCTTAGCGGTATTA+CGG | - | chr1.2:59908360-59908379 | MS.gene40835:intron | 40.0% | |
| ! | CAGGTTGAGCGAATAAATCA+AGG | + | chr1.2:59909349-59909368 | None:intergenic | 40.0% |
| ! | CCCAATTGAGGACTCTAAAA+AGG | + | chr1.2:59909175-59909194 | None:intergenic | 40.0% |
| ! | CTTTGTTTGTGAGTTTGGAG+GGG | + | chr1.2:59910362-59910381 | None:intergenic | 40.0% |
| ! | TTAGGTTGTTTGTGGCTTAG+CGG | - | chr1.2:59908352-59908371 | MS.gene40835:intron | 40.0% |
| ! | TTTAGTTCCCCAAATGAGGA+GGG | + | chr1.2:59910147-59910166 | None:intergenic | 40.0% |
| !! | GAGATTGTGAAGTTTTGACG+AGG | - | chr1.2:59908791-59908810 | MS.gene40835:intron | 40.0% |
| !! | GCTTTGTTTGTGAGTTTGGA+GGG | + | chr1.2:59910363-59910382 | None:intergenic | 40.0% |
| !! | GTTTTGACGAGGGTTACTAT+AGG | - | chr1.2:59908802-59908821 | MS.gene40835:intron | 40.0% |
| !! | TAAGGCTTTGTTTGCGAGTT+TGG | - | chr1.2:59910012-59910031 | MS.gene40835:intron | 40.0% |
| !! | TCACTTTTGCCTGATTGGTT+CGG | - | chr1.2:59908879-59908898 | MS.gene40835:intron | 40.0% |
| !!! | TTTTAGTTCCCCAAATGAGG+AGG | + | chr1.2:59910148-59910167 | None:intergenic | 40.0% |
| AAAAGGCTGCAAGGGATTCT+AGG | - | chr1.2:59910576-59910595 | MS.gene40835:CDS | 45.0% | |
| AGGGGAAGGTTTGGGAAAAA+AGG | - | chr1.2:59910045-59910064 | MS.gene40835:intron | 45.0% | |
| AGTCTGAAGAAAAGGCTGCA+AGG | - | chr1.2:59910567-59910586 | MS.gene40835:CDS | 45.0% | |
| CATGCTCAAGCTCTTACACT+GGG | - | chr1.2:59910503-59910522 | MS.gene40835:intron | 45.0% | |
| CGGGTTCAATTGCGTACAAT+TGG | - | chr1.2:59908380-59908399 | MS.gene40835:intron | 45.0% | |
| CTCAATTGGGGTAGTTGGAA+GGG | - | chr1.2:59909185-59909204 | MS.gene40835:intron | 45.0% | |
| GAACACAAACTCCGTACTGT+TGG | - | chr1.2:59908230-59908249 | MS.gene40835:CDS | 45.0% | |
| GACACCAGTGTTTCCAATCA+CGG | + | chr1.2:59909979-59909998 | None:intergenic | 45.0% | |
| GTCTGAAGAAAAGGCTGCAA+GGG | - | chr1.2:59910568-59910587 | MS.gene40835:CDS | 45.0% | |
| TGAAACAATGCTGACGTGCT+TGG | - | chr1.2:59909573-59909592 | MS.gene40835:intron | 45.0% | |
| TTGTGGCTTAGCGGTATTAC+GGG | - | chr1.2:59908361-59908380 | MS.gene40835:intron | 45.0% | |
| ! | CTTTGTTTGCGAGTTTGGAG+GGG | - | chr1.2:59910017-59910036 | MS.gene40835:intron | 45.0% |
| !! | CACTTTTGCCTGATTGGTTC+GGG | - | chr1.2:59908880-59908899 | MS.gene40835:intron | 45.0% |
| !! | GCTTTGTTTGCGAGTTTGGA+GGG | - | chr1.2:59910016-59910035 | MS.gene40835:intron | 45.0% |
| !! | GGCTTTGTTTGTGAGTTTGG+AGG | + | chr1.2:59910364-59910383 | None:intergenic | 45.0% |
| !!! | ACTTTTGCCTGATTGGTTCG+GGG | - | chr1.2:59908881-59908900 | MS.gene40835:intron | 45.0% |
| ACGAAAGTAAGGGAGATGCG+AGG | + | chr1.2:59909377-59909396 | None:intergenic | 50.0% | |
| ATAGAGGAAAATGGGAGGGG+AGG | - | chr1.2:59910086-59910105 | MS.gene40835:intron | 50.0% | |
| CCTCAATTGGGGTAGTTGGA+AGG | - | chr1.2:59909184-59909203 | MS.gene40835:intron | 50.0% | |
| CCTTCCAACTACCCCAATTG+AGG | + | chr1.2:59909187-59909206 | None:intergenic | 50.0% | |
| GAGTCCTCAATTGGGGTAGT+TGG | - | chr1.2:59909180-59909199 | MS.gene40835:intron | 50.0% | |
| GCATGCTCAAGCTCTTACAC+TGG | - | chr1.2:59910502-59910521 | MS.gene40835:intron | 50.0% | |
| GTTTGTGAGTTTGGAGGGGA+GGG | + | chr1.2:59910358-59910377 | None:intergenic | 50.0% | |
| TAGAGGAAAATGGGAGGGGA+GGG | - | chr1.2:59910087-59910106 | MS.gene40835:intron | 50.0% | |
| TGTTTGTGAGTTTGGAGGGG+AGG | + | chr1.2:59910359-59910378 | None:intergenic | 50.0% | |
| TTTGCGAGTTTGGAGGGGAA+GGG | - | chr1.2:59910022-59910041 | MS.gene40835:intron | 50.0% | |
| TTTGTGAGTTTGGAGGGGAG+GGG | + | chr1.2:59910357-59910376 | None:intergenic | 50.0% | |
| ! | GAAGGAAAGGCTTTGTGGAG+TGG | + | chr1.2:59910335-59910354 | None:intergenic | 50.0% |
| !! | ATTGGTTCGGGGACGAGAAT+TGG | - | chr1.2:59908892-59908911 | MS.gene40835:intron | 50.0% |
| !! | CTTACACTGGGAGCATTAGC+TGG | - | chr1.2:59910515-59910534 | MS.gene40835:intron | 50.0% |
| !! | GGCTTTGTTTGCGAGTTTGG+AGG | - | chr1.2:59910015-59910034 | MS.gene40835:intron | 50.0% |
| !! | TCGGGGACGAGAATTGGTTT+TGG | - | chr1.2:59908898-59908917 | MS.gene40835:intron | 50.0% |
| AAAATGGGAGGGGAGGGCTT+TGG | - | chr1.2:59910093-59910112 | MS.gene40835:intron | 55.0% | |
| AAATGGGAGGGGAGGGCTTT+GGG | - | chr1.2:59910094-59910113 | MS.gene40835:intron | 55.0% | |
| AGCATTAGCTGGAGCTGCAG+TGG | - | chr1.2:59910526-59910545 | MS.gene40835:intron | 55.0% | |
| AGGGAGATGCGAGGTATACC+AGG | + | chr1.2:59909368-59909387 | None:intergenic | 55.0% | |
| GAGGGGAAGGAAAGGCTTTG+TGG | + | chr1.2:59910340-59910359 | None:intergenic | 55.0% | |
| GTTTGCGAGTTTGGAGGGGA+AGG | - | chr1.2:59910021-59910040 | MS.gene40835:intron | 55.0% | |
| TTCTCGTCCCCGAACCAATC+AGG | + | chr1.2:59908891-59908910 | None:intergenic | 55.0% | |
| AATGGGAGGGGAGGGCTTTG+GGG | - | chr1.2:59910095-59910114 | MS.gene40835:intron | 60.0% | |
| CGAGTTTGGAGGGGAAGGGA+GGG | - | chr1.2:59910026-59910045 | MS.gene40835:intron | 60.0% | |
| GAGTTTGGAGGGGAAGGGAG+GGG | - | chr1.2:59910027-59910046 | MS.gene40835:intron | 60.0% | |
| GGGAAGGGAGGGGAAGGTTT+GGG | - | chr1.2:59910037-59910056 | MS.gene40835:intron | 60.0% | |
| TGAGTTTGGAGGGGAGGGGA+AGG | + | chr1.2:59910353-59910372 | None:intergenic | 60.0% | |
| TTGGAGGGGAGGGGAAGGAA+AGG | + | chr1.2:59910348-59910367 | None:intergenic | 60.0% | |
| GCGAGTTTGGAGGGGAAGGG+AGG | - | chr1.2:59910025-59910044 | MS.gene40835:intron | 65.0% | |
| GGGGAAGGGAGGGGAAGGTT+TGG | - | chr1.2:59910036-59910055 | MS.gene40835:intron | 65.0% | |
| TTGGAGGGGAAGGGAGGGGA+AGG | - | chr1.2:59910031-59910050 | MS.gene40835:intron | 65.0% | |
| ! | ATGGGAGGGGAGGGCTTTGG+GGG | - | chr1.2:59910096-59910115 | MS.gene40835:intron | 65.0% |
| !! | TGGGAGGGGAGGGCTTTGGG+GGG | - | chr1.2:59910097-59910116 | MS.gene40835:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 59908182 | 59910604 | 59908182 | ID=MS.gene40835 |
| chr1.2 | mRNA | 59908182 | 59910604 | 59908182 | ID=MS.gene40835.t1;Parent=MS.gene40835 |
| chr1.2 | exon | 59910535 | 59910604 | 59910535 | ID=MS.gene40835.t1.exon1;Parent=MS.gene40835.t1 |
| chr1.2 | CDS | 59910535 | 59910604 | 59910535 | ID=cds.MS.gene40835.t1;Parent=MS.gene40835.t1 |
| chr1.2 | exon | 59910340 | 59910430 | 59910340 | ID=MS.gene40835.t1.exon2;Parent=MS.gene40835.t1 |
| chr1.2 | CDS | 59910340 | 59910430 | 59910340 | ID=cds.MS.gene40835.t1;Parent=MS.gene40835.t1 |
| chr1.2 | exon | 59908182 | 59908287 | 59908182 | ID=MS.gene40835.t1.exon3;Parent=MS.gene40835.t1 |
| chr1.2 | CDS | 59908182 | 59908287 | 59908182 | ID=cds.MS.gene40835.t1;Parent=MS.gene40835.t1 |
| Gene Sequence |
| Protein sequence |
