AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene40855

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40855.t1 MTR_5g045560 91.561 237 20 0 1 237 1 237 2.18e-152 423
MS.gene40855.t1 MTR_5g055100 77.215 237 54 0 1 237 1 237 3.08e-135 380
MS.gene40855.t1 MTR_2g085280 77.119 236 54 0 1 236 1 236 4.27e-134 377
MS.gene40855.t1 MTR_2g085250 77.119 236 54 0 1 236 1 236 1.43e-133 375
MS.gene40855.t1 MTR_5g053390 76.419 229 54 0 1 229 1 229 2.89e-123 350
MS.gene40855.t1 MTR_8g043650 67.511 237 77 0 1 237 1 237 1.85e-115 330
MS.gene40855.t1 MTR_1g075600 71.111 225 65 0 1 225 1 225 1.60e-112 322
MS.gene40855.t1 MTR_1g077360 68.444 225 71 0 1 225 1 225 2.71e-109 314
MS.gene40855.t1 MTR_1g105920 68.468 222 70 0 1 222 1 222 1.71e-106 307
MS.gene40855.t1 MTR_2g030740 67.932 237 76 0 1 237 1 237 2.23e-105 304
MS.gene40855.t1 MTR_1g105910 64.889 225 79 0 1 225 1 225 1.15e-104 302
MS.gene40855.t1 MTR_1g012570 67.511 237 77 0 1 237 1 237 2.06e-102 297
MS.gene40855.t1 MTR_3g052920 65.315 222 77 0 1 222 1 222 9.09e-100 290
MS.gene40855.t1 MTR_3g030770 62.128 235 71 3 1 225 1 227 2.25e-96 281
MS.gene40855.t1 MTR_1g105905 62.273 220 83 0 18 237 1 220 3.64e-96 280
MS.gene40855.t1 MTR_1g108510 62.128 235 71 3 1 225 1 227 7.16e-96 280
MS.gene40855.t1 MTR_0121s0080 59.494 237 95 1 1 237 1 236 1.15e-94 277
MS.gene40855.t1 MTR_2g093190 61.277 235 73 3 1 225 1 227 7.97e-94 275
MS.gene40855.t1 MTR_1g108580 57.741 239 84 3 1 237 1 224 1.29e-87 259
MS.gene40855.t1 MTR_3g052870 59.817 219 69 1 1 219 1 200 2.69e-87 258
MS.gene40855.t1 MTR_1g106070 66.851 181 60 0 1 181 1 181 2.09e-83 246
MS.gene40855.t1 MTR_7g062350 52.542 236 110 2 3 237 14 248 3.61e-78 236
MS.gene40855.t1 MTR_1g075570 59.551 178 58 1 18 195 1 164 2.34e-61 190
MS.gene40855.t1 MTR_3g080940 47.191 178 94 0 1 178 1 178 1.76e-56 179
MS.gene40855.t1 MTR_0121s0100 67.188 128 42 0 1 128 1 128 2.53e-55 173
MS.gene40855.t1 MTR_3g030780 65.323 124 43 0 1 124 1 124 4.76e-53 167
MS.gene40855.t1 MTR_3g067910 74.510 102 26 0 21 122 2 103 3.10e-49 157
MS.gene40855.t1 MTR_3g067915 59.140 93 38 0 33 125 3 95 9.06e-31 109
MS.gene40855.t1 MTR_3g067875 92.857 56 4 0 18 73 1 56 2.39e-30 107
MS.gene40855.t1 MTR_8g086290 36.196 163 100 1 5 167 8 166 5.23e-30 110
MS.gene40855.t1 MTR_7g028448 40.000 155 81 2 5 159 8 150 2.26e-29 108
MS.gene40855.t1 MTR_4g036915 40.000 155 81 2 5 159 8 150 2.26e-29 108
MS.gene40855.t1 MTR_2g105290 34.545 165 104 1 5 169 8 168 1.75e-28 106
MS.gene40855.t1 MTR_3g067870 75.410 61 15 0 16 76 83 143 8.97e-25 96.3
MS.gene40855.t1 MTR_1g108500 55.208 96 22 1 22 117 110 184 1.73e-24 99.8
MS.gene40855.t1 MTR_4g131030 32.022 178 96 3 9 171 2 169 2.35e-24 96.7
MS.gene40855.t1 MTR_1g047550 53.247 77 36 0 9 85 2 78 3.33e-23 92.8
MS.gene40855.t1 MTR_1g063160 33.939 165 93 3 9 171 2 152 4.48e-23 92.4
MS.gene40855.t1 MTR_8g079502 56.338 71 31 0 9 79 2 72 7.09e-23 92.0
MS.gene40855.t1 MTR_8g051580 40.625 128 67 3 9 131 2 125 2.24e-22 90.5
MS.gene40855.t1 MTR_1g054265 49.367 79 40 0 9 87 2 80 5.10e-21 86.7
MS.gene40855.t1 MTR_4g127140 32.597 181 108 3 5 175 8 184 6.13e-21 87.0
MS.gene40855.t1 MTR_8g046350 34.965 143 83 3 9 147 2 138 1.73e-20 85.1
MS.gene40855.t1 MTR_4g094632 40.351 114 65 2 9 121 2 113 6.35e-20 83.6
MS.gene40855.t1 MTR_3g005530 52.941 68 32 0 9 76 2 69 1.03e-18 82.0
MS.gene40855.t1 MTR_4g094638 55.072 69 31 0 9 77 2 70 2.47e-18 79.7
MS.gene40855.t1 MTR_3g452380 48.649 74 38 0 3 76 11 84 5.55e-18 80.5
MS.gene40855.t1 MTR_4g102530 50.685 73 36 0 10 82 3 75 6.38e-18 79.3
MS.gene40855.t1 MTR_4g093970 54.545 66 30 0 10 75 29 94 8.18e-18 79.7
MS.gene40855.t1 MTR_8g033270 51.899 79 36 1 9 85 2 80 1.32e-17 79.7
MS.gene40855.t1 MTR_5g066180 51.471 68 33 0 9 76 2 69 1.50e-17 79.0
MS.gene40855.t1 MTR_1g053070 40.000 120 47 2 9 103 2 121 2.15e-17 79.0
MS.gene40855.t1 MTR_4g109830 52.174 69 32 1 9 76 2 70 4.06e-17 77.8
MS.gene40855.t1 MTR_8g087860 51.471 68 33 0 9 76 18 85 6.74e-17 77.4
MS.gene40855.t1 MTR_7g075870 53.731 67 31 0 10 76 3 69 1.32e-16 75.9
MS.gene40855.t1 MTR_2g017865 51.471 68 33 0 9 76 17 84 1.40e-16 77.0
MS.gene40855.t1 MTR_0003s0590 54.412 68 31 0 9 76 2 69 1.43e-16 76.6
MS.gene40855.t1 MTR_6g464720 52.174 69 32 1 9 76 2 70 2.46e-16 75.9
MS.gene40855.t1 MTR_1g101970 52.941 68 32 0 9 76 2 69 3.14e-16 74.7
MS.gene40855.t1 MTR_2g009890 46.667 75 40 0 9 83 2 76 3.97e-16 75.9
MS.gene40855.t1 MTR_5g032150 50.000 68 34 0 9 76 2 69 4.09e-16 75.1
MS.gene40855.t1 MTR_8g022970 33.750 160 85 5 10 159 19 167 4.71e-16 73.9
MS.gene40855.t1 MTR_8g033220 50.725 69 34 0 10 78 3 71 4.90e-16 74.7
MS.gene40855.t1 MTR_5g032520 50.000 68 34 0 9 76 2 69 5.04e-16 74.7
MS.gene40855.t1 MTR_8g033220 50.725 69 34 0 10 78 3 71 5.13e-16 74.7
MS.gene40855.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 5.40e-16 74.7
MS.gene40855.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 5.43e-16 75.1
MS.gene40855.t1 MTR_4g084740 46.067 89 46 2 9 95 2 90 7.38e-16 75.9
MS.gene40855.t1 MTR_6g015975 52.174 69 32 1 9 76 2 70 8.20e-16 74.7
MS.gene40855.t1 MTR_7g016600 52.174 69 32 1 9 76 2 70 1.06e-15 74.3
MS.gene40855.t1 MTR_3g102570 51.429 70 33 1 9 77 2 71 1.59e-15 74.7
MS.gene40855.t1 MTR_7g075870 52.941 68 31 1 10 76 3 70 2.66e-15 72.4
MS.gene40855.t1 MTR_1g029670 37.398 123 52 3 9 131 2 99 2.83e-15 71.6
MS.gene40855.t1 MTR_5g021270 51.429 70 32 1 9 76 2 71 2.90e-15 72.8
MS.gene40855.t1 MTR_5g021270 51.429 70 32 1 9 76 2 71 2.92e-15 72.8
MS.gene40855.t1 MTR_8g066260 47.826 69 35 1 9 76 2 70 3.92e-15 72.4
MS.gene40855.t1 MTR_3g088615 47.143 70 35 1 9 76 2 71 3.97e-15 71.2
MS.gene40855.t1 MTR_7g016630 45.833 72 38 1 9 79 2 73 4.44e-15 72.8
MS.gene40855.t1 MTR_3g109930 33.566 143 73 5 27 159 20 150 5.27e-15 70.9
MS.gene40855.t1 MTR_1g038300 33.974 156 69 5 9 130 2 157 5.44e-15 72.0
MS.gene40855.t1 MTR_2g461710 55.357 56 25 0 9 64 2 57 5.63e-15 67.8
MS.gene40855.t1 MTR_5g046870 50.725 69 33 1 9 76 2 70 6.24e-15 68.9
MS.gene40855.t1 MTR_5g046790 47.826 69 35 1 9 76 2 70 6.62e-15 71.2
MS.gene40855.t1 MTR_4g051538 34.868 152 78 5 1 147 1 136 1.06e-14 71.2
MS.gene40855.t1 MTR_5g066960 50.877 57 28 0 9 65 2 58 2.32e-14 66.2
MS.gene40855.t1 MTR_7g075850 45.122 82 42 2 9 87 2 83 4.86e-14 69.7
MS.gene40855.t1 MTR_3g113030 49.206 63 32 0 9 71 2 64 6.08e-14 68.9
MS.gene40855.t1 MTR_8g097090 49.275 69 34 1 9 76 2 70 7.54e-14 68.9
MS.gene40855.t1 MTR_3g437790 30.986 142 83 4 26 159 30 164 8.81e-14 67.8
MS.gene40855.t1 MTR_4g109810 55.357 56 25 0 9 64 2 57 8.93e-14 68.9
MS.gene40855.t1 MTR_3g084980 55.357 56 25 0 9 64 2 57 1.34e-13 68.6
MS.gene40855.t1 MTR_4g093030 49.180 61 31 0 9 69 2 62 8.69e-13 64.7
MS.gene40855.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.12e-11 61.2
MS.gene40855.t1 MTR_4g108720 41.558 77 42 2 9 83 2 77 2.15e-11 63.2
MS.gene40855.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.23e-11 61.2
MS.gene40855.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.33e-11 61.6
MS.gene40855.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.35e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40855.t1 AT5G60440 49.741 193 87 5 5 193 3 189 1.72e-52 172
MS.gene40855.t1 AT1G01530 43.915 189 96 4 4 191 2 181 7.65e-42 143
MS.gene40855.t1 AT2G24840 48.125 160 74 4 9 163 63 218 3.42e-40 139
MS.gene40855.t1 AT1G65360 39.149 235 122 5 5 230 3 225 3.45e-40 138
MS.gene40855.t1 AT4G36590 43.293 164 83 3 5 160 3 164 8.70e-34 122
MS.gene40855.t1 AT3G04100 31.088 193 125 3 2 186 7 199 1.85e-27 104
MS.gene40855.t1 AT1G72350 57.534 73 29 1 9 81 43 113 6.11e-22 90.5
MS.gene40855.t1 AT1G28460 35.714 140 87 1 5 141 4 143 1.31e-21 88.6
MS.gene40855.t1 AT2G34440 32.432 148 98 2 9 156 2 147 1.52e-21 88.2
MS.gene40855.t1 AT3G66656 37.815 119 70 1 9 123 2 120 5.58e-21 87.0
MS.gene40855.t1 AT2G45650 57.353 68 29 0 9 76 2 69 3.00e-19 84.0
MS.gene40855.t1 AT2G45660 55.882 68 30 0 10 77 3 70 5.42e-19 81.3
MS.gene40855.t1 AT5G51870 38.583 127 58 3 5 123 21 135 9.11e-19 81.6
MS.gene40855.t1 AT2G45660 55.882 68 30 0 10 77 3 70 1.60e-18 81.3
MS.gene40855.t1 AT4G22950 49.315 73 37 0 10 82 3 75 2.65e-18 79.7
MS.gene40855.t1 AT4G09960 51.471 68 33 0 9 76 2 69 2.79e-18 80.9
MS.gene40855.t1 AT4G09960 51.471 68 33 0 9 76 3 70 3.40e-18 80.9
MS.gene40855.t1 AT4G09960 51.471 68 33 0 9 76 2 69 3.45e-18 80.9
MS.gene40855.t1 AT1G29962 31.902 163 102 4 5 161 4 163 3.74e-18 79.7
MS.gene40855.t1 AT4G09960 51.471 68 33 0 9 76 12 79 4.57e-18 80.5
MS.gene40855.t1 AT5G51870 38.525 122 55 3 10 123 3 112 5.55e-18 79.0
MS.gene40855.t1 AT4G09960 51.471 68 33 0 9 76 28 95 6.20e-18 80.5
MS.gene40855.t1 AT5G51870 56.716 67 29 0 10 76 3 69 8.54e-18 79.3
MS.gene40855.t1 AT4G22950 50.704 71 35 0 10 80 3 73 9.73e-18 79.3
MS.gene40855.t1 AT4G22950 50.704 71 35 0 10 80 3 73 9.73e-18 79.3
MS.gene40855.t1 AT5G51870 55.714 70 31 0 7 76 10 79 1.07e-17 79.3
MS.gene40855.t1 AT1G28450 32.867 143 90 3 5 141 4 146 1.15e-17 78.2
MS.gene40855.t1 AT3G57230 50.000 68 34 0 9 76 2 69 1.23e-17 77.4
MS.gene40855.t1 AT4G09960 51.471 68 33 0 9 76 97 164 1.63e-17 80.5
MS.gene40855.t1 AT5G51870 56.716 67 29 0 10 76 3 69 1.64e-17 78.6
MS.gene40855.t1 AT3G57390 54.412 68 31 0 9 76 2 69 2.52e-17 78.2
MS.gene40855.t1 AT4G37940 51.471 68 33 0 9 76 2 69 3.67e-17 77.8
MS.gene40855.t1 AT5G62165 52.239 67 32 0 10 76 3 69 3.75e-17 74.7
MS.gene40855.t1 AT4G18960 49.333 75 38 0 2 76 11 85 3.79e-17 78.2
MS.gene40855.t1 AT4G37940 51.471 68 33 0 9 76 2 69 4.13e-17 76.6
MS.gene40855.t1 AT4G37940 51.471 68 33 0 9 76 2 69 4.15e-17 77.8
MS.gene40855.t1 AT5G10140 50.725 69 33 1 9 76 2 70 4.60e-17 76.3
MS.gene40855.t1 AT2G22540 52.941 68 32 0 9 76 2 69 4.89e-17 77.8
MS.gene40855.t1 AT2G22540 52.941 68 32 0 9 76 2 69 4.89e-17 77.8
MS.gene40855.t1 AT3G57230 50.000 68 34 0 9 76 2 69 4.94e-17 77.8
MS.gene40855.t1 AT3G57230 50.000 68 34 0 9 76 2 69 4.94e-17 77.8
MS.gene40855.t1 AT3G57390 54.412 68 31 0 9 76 2 69 5.08e-17 78.2
MS.gene40855.t1 AT5G62165 52.239 67 32 0 10 76 3 69 5.35e-17 75.9
MS.gene40855.t1 AT5G62165 52.239 67 32 0 10 76 3 69 5.35e-17 75.9
MS.gene40855.t1 AT5G62165 52.239 67 32 0 10 76 3 69 5.35e-17 75.9
MS.gene40855.t1 AT2G42830 47.368 76 40 0 1 76 9 84 5.65e-17 77.8
MS.gene40855.t1 AT2G42830 47.368 76 40 0 1 76 9 84 6.12e-17 77.8
MS.gene40855.t1 AT5G10140 50.725 69 33 1 9 76 2 70 6.74e-17 76.3
MS.gene40855.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.74e-17 75.5
MS.gene40855.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.74e-17 75.5
MS.gene40855.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.74e-17 75.5
MS.gene40855.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.74e-17 75.5
MS.gene40855.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.74e-17 75.5
MS.gene40855.t1 AT5G10140 50.725 69 33 1 9 76 2 70 7.64e-17 76.3
MS.gene40855.t1 AT3G58780 50.704 71 35 0 6 76 14 84 7.66e-17 77.4
MS.gene40855.t1 AT3G58780 50.704 71 35 0 6 76 20 90 8.28e-17 77.4
MS.gene40855.t1 AT5G10140 50.725 69 33 1 9 76 2 70 9.87e-17 75.9
MS.gene40855.t1 AT4G24540 52.941 68 32 0 9 76 2 69 1.02e-16 76.6
MS.gene40855.t1 AT5G13790 52.941 68 32 0 9 76 2 69 1.10e-16 77.4
MS.gene40855.t1 AT5G13790 52.941 68 32 0 9 76 2 69 1.12e-16 77.4
MS.gene40855.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.64e-16 75.5
MS.gene40855.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.64e-16 75.5
MS.gene40855.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.86e-16 75.5
MS.gene40855.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.86e-16 75.5
MS.gene40855.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.86e-16 75.5
MS.gene40855.t1 AT3G58780 50.704 71 35 0 6 76 14 84 1.87e-16 77.0
MS.gene40855.t1 AT5G51860 35.443 158 94 2 10 163 3 156 2.88e-16 75.1
MS.gene40855.t1 AT3G54340 50.000 70 33 1 9 76 2 71 2.89e-16 75.5
MS.gene40855.t1 AT1G77950 35.000 120 76 2 9 127 2 120 3.15e-16 75.9
MS.gene40855.t1 AT1G77950 35.000 120 76 2 9 127 2 120 3.15e-16 75.9
MS.gene40855.t1 AT1G77950 35.000 120 76 2 9 127 2 120 3.15e-16 75.9
MS.gene40855.t1 AT1G77950 35.000 120 76 2 9 127 2 120 3.15e-16 75.9
MS.gene40855.t1 AT5G51860 35.443 158 94 2 10 163 3 156 3.29e-16 75.1
MS.gene40855.t1 AT1G77980 50.704 71 34 1 9 78 2 72 3.51e-16 76.6
MS.gene40855.t1 AT2G22630 50.000 68 34 0 9 76 2 69 3.73e-16 75.1
MS.gene40855.t1 AT2G22630 50.000 68 34 0 9 76 2 69 3.73e-16 75.1
MS.gene40855.t1 AT3G61120 52.941 68 32 0 9 76 2 69 4.09e-16 75.5
MS.gene40855.t1 AT3G30260 47.826 69 35 1 9 76 2 70 5.65e-16 75.1
MS.gene40855.t1 AT1G22130 49.367 79 38 2 9 86 2 79 6.34e-16 75.9
MS.gene40855.t1 AT4G11880 50.000 72 35 1 10 80 3 74 1.23e-15 72.8
MS.gene40855.t1 AT4G11880 50.000 72 35 1 10 80 3 74 1.23e-15 72.8
MS.gene40855.t1 AT5G23260 49.333 75 36 1 5 77 14 88 1.35e-15 74.3
MS.gene40855.t1 AT5G23260 49.333 75 36 1 5 77 14 88 1.41e-15 74.3
MS.gene40855.t1 AT2G14210 49.275 69 34 1 9 76 2 70 1.62e-15 73.6
MS.gene40855.t1 AT5G60910 49.275 69 34 1 9 76 2 70 1.77e-15 73.6
MS.gene40855.t1 AT1G26310 49.275 69 34 1 9 76 2 70 1.86e-15 73.9
MS.gene40855.t1 AT4G11880 50.000 72 35 1 10 80 3 74 1.93e-15 73.2
MS.gene40855.t1 AT4G11880 50.000 72 35 1 10 80 3 74 1.93e-15 73.2
MS.gene40855.t1 AT2G14210 49.275 69 34 1 9 76 2 70 2.08e-15 73.2
MS.gene40855.t1 AT5G15800 52.174 69 32 1 9 76 2 70 2.46e-15 73.6
MS.gene40855.t1 AT1G17310 54.054 74 32 1 8 81 47 118 4.00e-15 72.0
MS.gene40855.t1 AT5G15800 52.174 69 32 1 9 76 2 70 4.06e-15 72.8
MS.gene40855.t1 AT5G23260 50.704 71 33 1 9 77 2 72 4.68e-15 72.4
MS.gene40855.t1 AT5G23260 50.704 71 33 1 9 77 2 72 5.03e-15 72.4
MS.gene40855.t1 AT5G20240 48.571 70 34 1 9 76 2 71 5.63e-15 70.1
MS.gene40855.t1 AT1G17310 54.054 74 32 1 8 81 58 129 5.99e-15 72.0
MS.gene40855.t1 AT5G65050 46.377 69 36 1 9 76 2 70 7.34e-15 70.5
MS.gene40855.t1 AT1G69120 46.377 69 36 1 9 76 2 70 7.62e-15 71.6
MS.gene40855.t1 AT5G20240 48.571 70 34 1 9 76 2 71 8.42e-15 71.2
MS.gene40855.t1 AT2G22540 51.471 68 28 1 9 76 2 64 1.12e-14 71.2
MS.gene40855.t1 AT1G69120 46.377 69 36 1 9 76 2 70 1.40e-14 71.2
MS.gene40855.t1 AT5G65050 46.377 69 36 1 9 76 2 70 1.49e-14 70.1
MS.gene40855.t1 AT5G65050 46.377 69 36 1 9 76 2 70 1.51e-14 70.1
MS.gene40855.t1 AT5G65050 46.377 69 36 1 9 76 2 70 1.59e-14 69.7
MS.gene40855.t1 AT2G03710 48.571 70 34 2 9 76 2 71 3.06e-14 69.3
MS.gene40855.t1 AT1G47760 33.043 115 67 2 9 115 2 114 3.14e-14 68.9
MS.gene40855.t1 AT3G58780 52.459 61 29 0 6 66 14 74 3.95e-14 69.7
MS.gene40855.t1 AT3G02310 47.826 69 35 1 9 76 2 70 4.77e-14 68.9
MS.gene40855.t1 AT5G65060 46.377 69 36 1 9 76 2 70 5.39e-14 68.6
MS.gene40855.t1 AT5G65060 46.377 69 36 1 9 76 2 70 5.86e-14 68.6
MS.gene40855.t1 AT5G65060 46.377 69 36 1 9 76 2 70 6.00e-14 68.6
MS.gene40855.t1 AT2G03710 48.571 70 34 2 9 76 2 71 6.25e-14 69.7
MS.gene40855.t1 AT5G65070 44.928 69 37 1 9 76 2 70 6.52e-14 67.4
MS.gene40855.t1 AT3G58780 52.459 61 29 0 6 66 14 74 6.66e-14 69.7
MS.gene40855.t1 AT2G03710 48.571 70 34 2 9 76 2 71 6.76e-14 69.3
MS.gene40855.t1 AT1G71692 45.714 70 37 1 9 77 2 71 7.06e-14 68.6
MS.gene40855.t1 AT1G24260 49.275 69 34 1 9 76 2 70 7.74e-14 69.3
MS.gene40855.t1 AT1G24260 49.275 69 34 1 9 76 2 70 8.15e-14 69.3
MS.gene40855.t1 AT1G24260 49.275 69 34 1 9 76 2 70 8.59e-14 68.9
MS.gene40855.t1 AT3G02310 47.826 69 35 1 9 76 2 70 9.83e-14 68.9
MS.gene40855.t1 AT5G65070 44.928 69 37 1 9 76 2 70 1.19e-13 67.8
MS.gene40855.t1 AT1G18750 31.163 215 110 13 9 195 2 206 1.33e-13 69.7
MS.gene40855.t1 AT1G18750 31.163 215 110 13 9 195 2 206 1.36e-13 69.7
MS.gene40855.t1 AT5G65070 44.928 69 37 1 9 76 2 70 2.56e-13 67.4
MS.gene40855.t1 AT5G65070 44.928 69 37 1 9 76 2 70 3.28e-13 66.6
MS.gene40855.t1 AT2G03060 30.460 174 95 8 9 164 2 167 1.03e-12 67.0
MS.gene40855.t1 AT2G03060 30.460 174 95 8 9 164 2 167 1.03e-12 67.0
MS.gene40855.t1 AT2G03060 30.460 174 95 8 9 164 2 167 1.03e-12 67.0
MS.gene40855.t1 AT2G03060 30.460 174 95 8 9 164 2 167 1.11e-12 67.0
MS.gene40855.t1 AT5G65070 50.877 57 28 0 9 65 2 58 1.13e-12 65.9
MS.gene40855.t1 AT1G18750 30.409 171 98 7 9 177 2 153 1.83e-12 66.6
MS.gene40855.t1 AT4G37435 43.056 72 40 1 9 79 2 73 4.41e-12 63.2
MS.gene40855.t1 AT5G65080 40.260 77 45 1 1 76 1 77 4.83e-12 63.2
MS.gene40855.t1 AT5G65080 45.161 62 34 0 1 62 1 62 1.38e-11 62.4
MS.gene40855.t1 AT1G46408 34.127 126 68 4 10 127 5 123 1.39e-11 63.2
MS.gene40855.t1 AT5G49420 38.462 91 50 3 5 89 3 93 3.08e-11 62.8
MS.gene40855.t1 AT1G48150 33.108 148 78 7 5 131 12 159 6.54e-11 61.6

Find 59 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATTTGGCTTCAACAATA+TGG 0.200420 5.2:+36162526 MS.gene40855:CDS
TGCTGATAACGTTGAAATTC+AGG 0.208304 5.2:+36162367 MS.gene40855:CDS
ATGTTTCAACCTCACTTATT+TGG 0.211284 5.2:+36162512 MS.gene40855:CDS
CCTCATTATTCTTTCGTTGT+TGG 0.274543 5.2:-36162244 None:intergenic
ATCGCGTGATCTCGTCGTTT+TGG 0.284953 5.2:-36162118 None:intergenic
TCTATGACCGTTTCAACATT+TGG 0.310111 5.2:-36162071 None:intergenic
TCCCTTTGATAGGATGAATA+TGG 0.327781 5.2:+36162286 MS.gene40855:CDS
GGTGGACTTGTCCCTTTGAT+AGG 0.330711 5.2:+36162276 MS.gene40855:CDS
CTTCCATTTCATGTTGGAAA+TGG 0.331329 5.2:+36162407 MS.gene40855:CDS
CTATGACCGTTTCAACATTT+GGG 0.363837 5.2:-36162070 None:intergenic
GAACCATTTCCAACATGAAA+TGG 0.375054 5.2:-36162410 None:intergenic
TGGATCATTCAAGAAGGCTT+TGG 0.378658 5.2:+36162316 MS.gene40855:CDS
TTATTTGGCTTCAACAATAT+GGG 0.380387 5.2:+36162527 MS.gene40855:CDS
AGCGAGCTTTGCACCCTTTG+TGG 0.386397 5.2:+36161990 MS.gene40855:CDS
CAACATGAAATGGAAGGGAT+TGG 0.437827 5.2:-36162400 None:intergenic
ATGCTCAAACTGCATGTTTG+AGG 0.448301 5.2:-36162435 None:intergenic
ATAAGTGAGGTTGAAACATT+GGG 0.452897 5.2:-36162508 None:intergenic
CATAGACCGTTATCTCTCTC+AGG 0.484381 5.2:+36162088 MS.gene40855:CDS
GAAGGTGGGCATGGTCCCCA+TGG 0.487450 5.2:+36162554 MS.gene40855:CDS
GCTGATAACGTTGAAATTCA+GGG 0.487876 5.2:+36162368 MS.gene40855:CDS
AATAAGTGAGGTTGAAACAT+TGG 0.488497 5.2:-36162509 None:intergenic
AACATGAAATGGAAGGGATT+GGG 0.490116 5.2:-36162399 None:intergenic
ATCATTCAAGAAGGCTTTGG+AGG 0.495610 5.2:+36162319 MS.gene40855:CDS
AACAATATGGGAGGAGAAGG+TGG 0.496190 5.2:+36162539 MS.gene40855:CDS
GTTGGCTCAGCTCATTTGCA+TGG 0.505188 5.2:-36162226 None:intergenic
GACCATATTCATCCTATCAA+AGG 0.516254 5.2:-36162288 None:intergenic
AGCAACATATGCACCACAAA+GGG 0.521852 5.2:-36162003 None:intergenic
AAGGTGGGCATGGTCCCCAT+GGG 0.524166 5.2:+36162555 MS.gene40855:CDS
TGGTCACCCAAATGTTGAAA+CGG 0.524927 5.2:+36162064 MS.gene40855:CDS
TACATTGACTCGTATGAAAG+AGG 0.527218 5.2:+36162184 MS.gene40855:CDS
CAATCCCTTCCATTTCATGT+TGG 0.532436 5.2:+36162401 MS.gene40855:CDS
CCTTCTTGAATGATCCAAGT+TGG 0.533724 5.2:-36162310 None:intergenic
ACCATATTCATCCTATCAAA+GGG 0.536947 5.2:-36162287 None:intergenic
ATGGGAGGAGAAGGTGGGCA+TGG 0.547684 5.2:+36162545 MS.gene40855:CDS
TTCAACAATATGGGAGGAGA+AGG 0.556945 5.2:+36162536 MS.gene40855:CDS
AGGATGAATATGGTCCAACT+TGG 0.567940 5.2:+36162296 MS.gene40855:CDS
CCAACTTGGATCATTCAAGA+AGG 0.570743 5.2:+36162310 MS.gene40855:CDS
CATTTCCAACATGAAATGGA+AGG 0.571593 5.2:-36162406 None:intergenic
GCTCGGATCAAAAGAACCCA+TGG 0.573893 5.2:-36162571 None:intergenic
GTGGCACCTGAGAGAGATAA+CGG 0.575928 5.2:-36162094 None:intergenic
ATTTCCAACATGAAATGGAA+GGG 0.576763 5.2:-36162405 None:intergenic
ATCATTAAGCTCACGCACAC+TGG 0.588533 5.2:-36162162 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.591444 5.2:+36161952 MS.gene40855:CDS
AATGAAAAGACCTTCTCACT+AGG 0.596511 5.2:-36162041 None:intergenic
CTTTCTTGAATAGCCCACTA+CGG 0.597990 5.2:-36161965 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.601112 5.2:+36161951 MS.gene40855:CDS
TTTGGCTTCAACAATATGGG+AGG 0.603260 5.2:+36162530 MS.gene40855:CDS
AGAAAGATCGAATCTTGTTG+AGG 0.605809 5.2:-36162467 None:intergenic
ACAATATGGGAGGAGAAGGT+GGG 0.607591 5.2:+36162540 MS.gene40855:CDS
TATATTCTCACCTAGTGAGA+AGG 0.609022 5.2:+36162031 MS.gene40855:CDS
CTCGGATCAAAAGAACCCAT+GGG 0.613719 5.2:-36162570 None:intergenic
TCGAGCGGAAAGAAAACTCA+AGG 0.622335 5.2:+36161876 MS.gene40855:CDS
GCTCACGCACACTGGCATGA+CGG 0.625752 5.2:-36162154 None:intergenic
CCAACAACGAAAGAATAATG+AGG 0.626750 5.2:+36162244 MS.gene40855:CDS
GAGCAACATATGCACCACAA+AGG 0.640810 5.2:-36162004 None:intergenic
TTGTTGAAGCCAAATAAGTG+AGG 0.672964 5.2:-36162521 None:intergenic
TGTGCTTCAACAATGTCGAG+CGG 0.674252 5.2:+36161861 None:intergenic
CGAGATCACGCGATTCATCG+AGG 0.745713 5.2:+36162127 MS.gene40855:CDS
TCGGATCAAAAGAACCCATG+GGG 0.747336 5.2:-36162569 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTGGCTTCAACAATAT+GGG + chr5.2:36162527-36162546 MS.gene40855:CDS 25.0%
!!! TCTTTCTAGCACAATTTTTA+CGG + chr5.2:36162483-36162502 MS.gene40855:CDS 25.0%
!!! TCTTTTTCATCTCAATCTTT+TGG - chr5.2:36161905-36161924 None:intergenic 25.0%
AATAAGTGAGGTTGAAACAT+TGG - chr5.2:36162512-36162531 None:intergenic 30.0%
ACCATATTCATCCTATCAAA+GGG - chr5.2:36162290-36162309 None:intergenic 30.0%
ATAAGTGAGGTTGAAACATT+GGG - chr5.2:36162511-36162530 None:intergenic 30.0%
ATGTTTCAACCTCACTTATT+TGG + chr5.2:36162512-36162531 MS.gene40855:CDS 30.0%
ATTTCCAACATGAAATGGAA+GGG - chr5.2:36162408-36162427 None:intergenic 30.0%
! AGAATAATGAGGCTCATTTT+TGG + chr5.2:36162255-36162274 MS.gene40855:CDS 30.0%
! CTTATTTGGCTTCAACAATA+TGG + chr5.2:36162526-36162545 MS.gene40855:CDS 30.0%
AACATGAAATGGAAGGGATT+GGG - chr5.2:36162402-36162421 None:intergenic 35.0%
AATGAAAAGACCTTCTCACT+AGG - chr5.2:36162044-36162063 None:intergenic 35.0%
AGAAAGATCGAATCTTGTTG+AGG - chr5.2:36162470-36162489 None:intergenic 35.0%
CATTTCCAACATGAAATGGA+AGG - chr5.2:36162409-36162428 None:intergenic 35.0%
CCAACAACGAAAGAATAATG+AGG + chr5.2:36162244-36162263 MS.gene40855:CDS 35.0%
CCTCATTATTCTTTCGTTGT+TGG - chr5.2:36162247-36162266 None:intergenic 35.0%
CTATGACCGTTTCAACATTT+GGG - chr5.2:36162073-36162092 None:intergenic 35.0%
CTTCCATTTCATGTTGGAAA+TGG + chr5.2:36162407-36162426 MS.gene40855:CDS 35.0%
GAACCATTTCCAACATGAAA+TGG - chr5.2:36162413-36162432 None:intergenic 35.0%
GACCATATTCATCCTATCAA+AGG - chr5.2:36162291-36162310 None:intergenic 35.0%
TATATTCTCACCTAGTGAGA+AGG + chr5.2:36162031-36162050 MS.gene40855:CDS 35.0%
TCCCTTTGATAGGATGAATA+TGG + chr5.2:36162286-36162305 MS.gene40855:CDS 35.0%
TCTATGACCGTTTCAACATT+TGG - chr5.2:36162074-36162093 None:intergenic 35.0%
TTGTTGAAGCCAAATAAGTG+AGG - chr5.2:36162524-36162543 None:intergenic 35.0%
! AGTGAGAAGGTCTTTTCATT+TGG + chr5.2:36162044-36162063 MS.gene40855:CDS 35.0%
! GCTGATAACGTTGAAATTCA+GGG + chr5.2:36162368-36162387 MS.gene40855:CDS 35.0%
! TGCTGATAACGTTGAAATTC+AGG + chr5.2:36162367-36162386 MS.gene40855:CDS 35.0%
!! ATAATGAGGCTCATTTTTGG+TGG + chr5.2:36162258-36162277 MS.gene40855:CDS 35.0%
!! TACATTGACTCGTATGAAAG+AGG + chr5.2:36162184-36162203 MS.gene40855:CDS 35.0%
AGCAACATATGCACCACAAA+GGG - chr5.2:36162006-36162025 None:intergenic 40.0%
AGGATGAATATGGTCCAACT+TGG + chr5.2:36162296-36162315 MS.gene40855:CDS 40.0%
ATGCTCAAACTGCATGTTTG+AGG - chr5.2:36162438-36162457 None:intergenic 40.0%
CAACATGAAATGGAAGGGAT+TGG - chr5.2:36162403-36162422 None:intergenic 40.0%
CAATCCCTTCCATTTCATGT+TGG + chr5.2:36162401-36162420 MS.gene40855:CDS 40.0%
CCAACTTGGATCATTCAAGA+AGG + chr5.2:36162310-36162329 MS.gene40855:CDS 40.0%
CCTTCTTGAATGATCCAAGT+TGG - chr5.2:36162313-36162332 None:intergenic 40.0%
CTTTCTTGAATAGCCCACTA+CGG - chr5.2:36161968-36161987 None:intergenic 40.0%
TGGATCATTCAAGAAGGCTT+TGG + chr5.2:36162316-36162335 MS.gene40855:CDS 40.0%
TGGTCACCCAAATGTTGAAA+CGG + chr5.2:36162064-36162083 MS.gene40855:CDS 40.0%
TTCAACAATATGGGAGGAGA+AGG + chr5.2:36162536-36162555 MS.gene40855:CDS 40.0%
! ATCATTCAAGAAGGCTTTGG+AGG + chr5.2:36162319-36162338 MS.gene40855:CDS 40.0%
! TTTGGCTTCAACAATATGGG+AGG + chr5.2:36162530-36162549 MS.gene40855:CDS 40.0%
AACAATATGGGAGGAGAAGG+TGG + chr5.2:36162539-36162558 MS.gene40855:CDS 45.0%
ACAATATGGGAGGAGAAGGT+GGG + chr5.2:36162540-36162559 MS.gene40855:CDS 45.0%
ATCATTAAGCTCACGCACAC+TGG - chr5.2:36162165-36162184 None:intergenic 45.0%
CATAGACCGTTATCTCTCTC+AGG + chr5.2:36162088-36162107 MS.gene40855:CDS 45.0%
GAGCAACATATGCACCACAA+AGG - chr5.2:36162007-36162026 None:intergenic 45.0%
TCGAGCGGAAAGAAAACTCA+AGG + chr5.2:36161876-36161895 MS.gene40855:CDS 45.0%
GTGGCACCTGAGAGAGATAA+CGG - chr5.2:36162097-36162116 None:intergenic 50.0%
! ATCGCGTGATCTCGTCGTTT+TGG - chr5.2:36162121-36162140 None:intergenic 50.0%
! GGTGGACTTGTCCCTTTGAT+AGG + chr5.2:36162276-36162295 MS.gene40855:CDS 50.0%
! GTTGGCTCAGCTCATTTGCA+TGG - chr5.2:36162229-36162248 None:intergenic 50.0%
!! TCGCGTGATCTCGTCGTTTT+GGG - chr5.2:36162120-36162139 None:intergenic 50.0%
AGCGAGCTTTGCACCCTTTG+TGG + chr5.2:36161990-36162009 MS.gene40855:CDS 55.0%
CGAGATCACGCGATTCATCG+AGG + chr5.2:36162127-36162146 MS.gene40855:CDS 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG + chr5.2:36161951-36161970 MS.gene40855:CDS 55.0%
!! CGCGTGATCTCGTCGTTTTG+GGG - chr5.2:36162119-36162138 None:intergenic 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG + chr5.2:36161952-36161971 MS.gene40855:CDS 55.0%
!!! GTGATCTCGTCGTTTTGGGG+TGG - chr5.2:36162116-36162135 None:intergenic 55.0%
AAGGTGGGCATGGTCCCCAT+GGG + chr5.2:36162555-36162574 MS.gene40855:CDS 60.0%
ATGGGAGGAGAAGGTGGGCA+TGG + chr5.2:36162545-36162564 MS.gene40855:CDS 60.0%
GCTCACGCACACTGGCATGA+CGG - chr5.2:36162157-36162176 None:intergenic 60.0%
GAAGGTGGGCATGGTCCCCA+TGG + chr5.2:36162554-36162573 MS.gene40855:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 36161873 36162586 36161873 ID=MS.gene40855
chr5.2 mRNA 36161873 36162586 36161873 ID=MS.gene40855.t1;Parent=MS.gene40855
chr5.2 exon 36161873 36162586 36161873 ID=MS.gene40855.t1.exon1;Parent=MS.gene40855.t1
chr5.2 CDS 36161873 36162586 36161873 ID=cds.MS.gene40855.t1;Parent=MS.gene40855.t1
Gene Sequence

>MS.gene40855

ATGTCGAGCGGAAAGAAAACTCAAGGTCGCCAAAAGATTGAGATGAAAAAGATGAGCAATGAAAGCAATCTTCAAGTAACTTTCTCGAAGCGCCGTAGTGGGCTATTCAAGAAAGCTAGCGAGCTTTGCACCCTTTGTGGTGCATATGTTGCTCTAATTATATTCTCACCTAGTGAGAAGGTCTTTTCATTTGGTCACCCAAATGTTGAAACGGTCATAGACCGTTATCTCTCTCAGGTGCCACCCCAAAACGACGAGATCACGCGATTCATCGAGGCTTACCGTCATGCCAGTGTGCGTGAGCTTAATGATACATTGACTCGTATGAAAGAGGCACTAGACATTGACAAGAACCATGCAAATGAGCTGAGCCAACAACGAAAGAATAATGAGGCTCATTTTTGGTGGACTTGTCCCTTTGATAGGATGAATATGGTCCAACTTGGATCATTCAAGAAGGCTTTGGAGGATCTTCAAAAACTCGTTGCACATTATGCTGATAACGTTGAAATTCAGGGTACTTCTACCCAATCCCTTCCATTTCATGTTGGAAATGGTTCATCCTCAAACATGCAGTTTGAGCATCAGCAAAATCCTCAACAAGATTCGATCTTTCTAGCACAATTTTTACGGAACCCAATGTTTCAACCTCACTTATTTGGCTTCAACAATATGGGAGGAGAAGGTGGGCATGGTCCCCATGGGTTCTTTTGA
Protein sequence

>MS.gene40855.t1

MSSGKKTQGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAYVALIIFSPSEKVFSFGHPNVETVIDRYLSQVPPQNDEITRFIEAYRHASVRELNDTLTRMKEALDIDKNHANELSQQRKNNEAHFWWTCPFDRMNMVQLGSFKKALEDLQKLVAHYADNVEIQGTSTQSLPFHVGNGSSSNMQFEHQQNPQQDSIFLAQFLRNPMFQPHLFGFNNMGGEGGHGPHGFF