Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40857.t1 | XP_013453837.1 | 98.5 | 402 | 6 | 0 | 1 | 402 | 27 | 428 | 1.20E-223 | 785.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40857.t1 | Q9ZQ89 | 79.3 | 401 | 80 | 2 | 1 | 401 | 1 | 398 | 1.4e-175 | 617.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40857.t1 | G7JZ34 | 98.5 | 402 | 6 | 0 | 1 | 402 | 1 | 402 | 9.0e-224 | 785.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054720 | MS.gene40857 | 0.825943 | 3.56E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40857.t1 | MTR_5g045520 | 98.507 | 402 | 6 | 0 | 1 | 402 | 27 | 428 | 0.0 | 810 |
| MS.gene40857.t1 | MTR_5g045520 | 98.507 | 402 | 6 | 0 | 1 | 402 | 1 | 402 | 0.0 | 808 |
| MS.gene40857.t1 | MTR_5g044710 | 81.728 | 405 | 62 | 4 | 1 | 401 | 1 | 397 | 0.0 | 641 |
| MS.gene40857.t1 | MTR_5g045530 | 78.713 | 404 | 80 | 3 | 1 | 401 | 1 | 401 | 0.0 | 600 |
| MS.gene40857.t1 | MTR_5g044710 | 82.263 | 327 | 49 | 3 | 79 | 401 | 2 | 323 | 0.0 | 511 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40857.t1 | AT2G03530 | 79.302 | 401 | 80 | 2 | 1 | 401 | 1 | 398 | 0.0 | 622 |
| MS.gene40857.t1 | AT2G03530 | 79.302 | 401 | 80 | 2 | 1 | 401 | 1 | 398 | 0.0 | 622 |
| MS.gene40857.t1 | AT2G03530 | 79.156 | 379 | 76 | 2 | 1 | 379 | 1 | 376 | 0.0 | 590 |
| MS.gene40857.t1 | AT2G03590 | 74.564 | 401 | 91 | 3 | 1 | 401 | 1 | 390 | 0.0 | 582 |
| MS.gene40857.t1 | AT2G03590 | 74.564 | 401 | 91 | 3 | 1 | 401 | 1 | 390 | 0.0 | 582 |
| MS.gene40857.t1 | AT2G03520 | 70.574 | 401 | 118 | 0 | 1 | 401 | 1 | 401 | 0.0 | 556 |
| MS.gene40857.t1 | AT1G26440 | 68.983 | 403 | 121 | 2 | 1 | 401 | 9 | 409 | 0.0 | 540 |
| MS.gene40857.t1 | AT1G26440 | 68.983 | 403 | 121 | 2 | 1 | 401 | 9 | 409 | 0.0 | 540 |
| MS.gene40857.t1 | AT1G26440 | 62.531 | 403 | 112 | 3 | 1 | 401 | 9 | 374 | 1.90e-167 | 474 |
| MS.gene40857.t1 | AT1G26440 | 62.531 | 403 | 111 | 3 | 1 | 401 | 9 | 373 | 4.34e-167 | 473 |
| MS.gene40857.t1 | AT2G03530 | 76.899 | 316 | 70 | 2 | 86 | 401 | 1 | 313 | 1.33e-165 | 467 |
| MS.gene40857.t1 | AT2G03530 | 76.899 | 316 | 70 | 2 | 86 | 401 | 1 | 313 | 1.33e-165 | 467 |
| MS.gene40857.t1 | AT1G26440 | 68.421 | 323 | 100 | 1 | 79 | 401 | 16 | 336 | 1.38e-154 | 440 |
| MS.gene40857.t1 | AT1G26440 | 68.421 | 323 | 100 | 1 | 79 | 401 | 16 | 336 | 1.38e-154 | 440 |
| MS.gene40857.t1 | AT2G03600 | 62.682 | 343 | 104 | 5 | 1 | 337 | 1 | 325 | 1.03e-146 | 420 |
| MS.gene40857.t1 | AT2G03600 | 61.652 | 339 | 106 | 4 | 1 | 337 | 1 | 317 | 1.08e-144 | 414 |
| MS.gene40857.t1 | AT2G03600 | 67.528 | 271 | 73 | 2 | 1 | 271 | 1 | 256 | 4.85e-129 | 372 |
| MS.gene40857.t1 | AT2G03600 | 67.528 | 271 | 73 | 2 | 1 | 271 | 1 | 256 | 4.85e-129 | 372 |
| MS.gene40857.t1 | AT1G26440 | 60.372 | 323 | 91 | 2 | 79 | 401 | 16 | 301 | 4.96e-129 | 374 |
| MS.gene40857.t1 | AT2G03600 | 62.543 | 291 | 71 | 3 | 1 | 268 | 1 | 276 | 4.84e-123 | 357 |
| MS.gene40857.t1 | AT1G26440 | 64.729 | 258 | 89 | 1 | 144 | 401 | 92 | 347 | 2.84e-109 | 325 |
| MS.gene40857.t1 | AT1G26440 | 73.913 | 92 | 22 | 1 | 1 | 90 | 9 | 100 | 2.55e-34 | 130 |
| MS.gene40857.t1 | AT2G03600 | 65.054 | 186 | 53 | 1 | 86 | 271 | 1 | 174 | 5.46e-77 | 236 |
Find 91 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCATCATTGACAAATTATT+TGG | 0.104477 | 5.2:-36125773 | MS.gene40857:CDS |
| TGGGAATGGCCTTCAGTTTA+TGG | 0.150076 | 5.2:-36125698 | MS.gene40857:CDS |
| GCAAGTTGAGTTAAGAAATT+TGG | 0.189492 | 5.2:+36127814 | None:intergenic |
| GCTGGTTTCCTTTGTGGATT+TGG | 0.212587 | 5.2:-36125718 | MS.gene40857:CDS |
| TTACTCAATCACCAATTTCT+TGG | 0.250935 | 5.2:-36127893 | MS.gene40857:CDS |
| TGAGAACAGAAGAGCTATTA+AGG | 0.268133 | 5.2:-36126135 | MS.gene40857:intron |
| ATTGTTACTTGCAGGATAAT+TGG | 0.271037 | 5.2:-36127393 | MS.gene40857:intron |
| CTGGTTTCCTTTGTGGATTT+GGG | 0.304929 | 5.2:-36125717 | MS.gene40857:CDS |
| GCAAGCATAACTGTTGTTAT+AGG | 0.325327 | 5.2:-36127262 | MS.gene40857:intron |
| GATAATAGCAGCCAAGAAAT+TGG | 0.327869 | 5.2:+36127882 | None:intergenic |
| TTGTTGGCTGGTTTCCTTTG+TGG | 0.337117 | 5.2:-36125724 | MS.gene40857:CDS |
| TGGAAGAGGCTGGGCCTTGT+TGG | 0.345029 | 5.2:-36125740 | MS.gene40857:CDS |
| ATTATCATTGCGTTTACATT+TGG | 0.351856 | 5.2:-36127865 | MS.gene40857:CDS |
| GGGAATGGCCTTCAGTTTAT+GGG | 0.352549 | 5.2:-36125697 | MS.gene40857:CDS |
| AGAGGCTGGGCCTTGTTGGC+TGG | 0.355695 | 5.2:-36125736 | MS.gene40857:CDS |
| ACATTTGGTCAGATAGGAAA+TGG | 0.356798 | 5.2:-36127850 | MS.gene40857:CDS |
| AGGAAGAACATATATCTTAC+TGG | 0.373403 | 5.2:-36125356 | MS.gene40857:CDS |
| GCGTTTACATTTGGTCAGAT+AGG | 0.379460 | 5.2:-36127856 | MS.gene40857:CDS |
| CAGTATGCATTTGCTCTAGT+TGG | 0.397774 | 5.2:-36127310 | MS.gene40857:CDS |
| GGTGTGCTCATGGCATCATC+AGG | 0.399673 | 5.2:-36125301 | MS.gene40857:CDS |
| GGTGGTGTGGTCCTTAGCCT+TGG | 0.413336 | 5.2:-36127346 | MS.gene40857:CDS |
| TCATCATTGACAAATTATTT+GGG | 0.414871 | 5.2:-36125772 | MS.gene40857:CDS |
| TGACAAATTATTTGGGAGAC+TGG | 0.417397 | 5.2:-36125765 | MS.gene40857:CDS |
| TTTCTTAACTCAACTTGCTC+AGG | 0.423669 | 5.2:-36127809 | MS.gene40857:intron |
| TTCCTTTGTGGATTTGGGAA+TGG | 0.434124 | 5.2:-36125712 | MS.gene40857:CDS |
| TTTGGGAAAAGACCTTTGAT+TGG | 0.437902 | 5.2:-36126006 | MS.gene40857:CDS |
| TTTATGTTTATTGTGGCTGT+TGG | 0.443744 | 5.2:-36125322 | MS.gene40857:CDS |
| TCCAGGGACTCATTGAAAGA+AGG | 0.445559 | 5.2:-36126326 | MS.gene40857:intron |
| GAGAGCAAGGGAGGTGCCAT+AGG | 0.456449 | 5.2:-36128012 | MS.gene40857:CDS |
| TGTGGCTGTTGGTGTGCTCA+TGG | 0.472927 | 5.2:-36125311 | MS.gene40857:CDS |
| GATTCCAGCGAAGAAAACTA+TGG | 0.475490 | 5.2:+36125978 | None:intergenic |
| GGAGAATATAGGAAATCATC+AGG | 0.478060 | 5.2:-36125376 | MS.gene40857:CDS |
| AATGTATTTGGTGGAGAGCA+AGG | 0.480973 | 5.2:-36128025 | MS.gene40857:CDS |
| GTGGTGTGGTCCTTAGCCTT+GGG | 0.483800 | 5.2:-36127345 | MS.gene40857:CDS |
| TCAGTAATGTTTGCAATGGC+AGG | 0.486775 | 5.2:-36127367 | MS.gene40857:CDS |
| AGTATGCATTTGCTCTAGTT+GGG | 0.489967 | 5.2:-36127309 | MS.gene40857:CDS |
| AGTTCAAGACAGGGTGGTAA+AGG | 0.491004 | 5.2:+36125803 | None:intergenic |
| CATTTGGTCAGATAGGAAAT+GGG | 0.496722 | 5.2:-36127849 | MS.gene40857:CDS |
| GACTTGGGTAAGTTCAAGAC+AGG | 0.501949 | 5.2:+36125793 | None:intergenic |
| TGCAGCAGCTGATGCTGTCC+AGG | 0.503952 | 5.2:-36125656 | MS.gene40857:intron |
| TAAAATAATAGTTAAATCAA+AGG | 0.511500 | 5.2:-36126225 | MS.gene40857:intron |
| TGCCATAGGGTGCATGCTGT+TGG | 0.512313 | 5.2:-36127998 | MS.gene40857:CDS |
| AGCCAACAGCATGCACCCTA+TGG | 0.513094 | 5.2:+36127996 | None:intergenic |
| TATGTTGTTTATGTTTATTG+TGG | 0.518587 | 5.2:-36125329 | MS.gene40857:CDS |
| AATTATTTGGGAGACTGGAA+TGG | 0.521853 | 5.2:-36125760 | MS.gene40857:CDS |
| TTTGTTGCTAAGTTGAATGC+TGG | 0.524858 | 5.2:+36125937 | None:intergenic |
| GAGACTGGAATGGAAGAGGC+TGG | 0.524923 | 5.2:-36125750 | MS.gene40857:CDS |
| ATAATTTGTCAATGATGACT+TGG | 0.527562 | 5.2:+36125777 | None:intergenic |
| TTGGGAGACTGGAATGGAAG+AGG | 0.530432 | 5.2:-36125754 | MS.gene40857:CDS |
| AACTCCTGGGAAAAGAATCT+CGG | 0.540525 | 5.2:+36127043 | None:intergenic |
| TGAGTTGAAAATGTATTTGG+TGG | 0.541521 | 5.2:-36128034 | None:intergenic |
| GGAAGAACATATATCTTACT+GGG | 0.545902 | 5.2:-36125355 | MS.gene40857:CDS |
| GGCGGTGTAAACATTCAGAT+GGG | 0.548193 | 5.2:+36125882 | None:intergenic |
| TTTATGGGAGGTCAAGCTGC+TGG | 0.548399 | 5.2:-36125682 | MS.gene40857:CDS |
| ATTTGCTCTAGTTGGGCTGT+CGG | 0.550748 | 5.2:-36127302 | MS.gene40857:CDS |
| AGGCGGTGTAAACATTCAGA+TGG | 0.559268 | 5.2:+36125881 | None:intergenic |
| TAATTTGTCAATGATGACTT+GGG | 0.560239 | 5.2:+36125778 | None:intergenic |
| GCCCTCAGTAATGTTTGCAA+TGG | 0.568356 | 5.2:-36127371 | MS.gene40857:CDS |
| ACAAAGGAAACCAGCCAACA+AGG | 0.568825 | 5.2:+36125726 | None:intergenic |
| ACTATGGTTAATCCAATCAA+AGG | 0.569183 | 5.2:+36125994 | None:intergenic |
| ATGTATTTGGTGGAGAGCAA+GGG | 0.570462 | 5.2:-36128024 | MS.gene40857:CDS |
| TGGACAGATTCCCAAGGCTA+AGG | 0.573485 | 5.2:+36127335 | None:intergenic |
| GGTGATTGAGTAATCGAGGT+AGG | 0.575423 | 5.2:+36127903 | None:intergenic |
| GTTTGCAATGGCAGGTGGTG+TGG | 0.575901 | 5.2:-36127359 | MS.gene40857:CDS |
| AAATCAAAGGATCTTGAAAG+TGG | 0.575914 | 5.2:-36126212 | MS.gene40857:CDS |
| TCTAACAGAGTCAAAACAGC+AGG | 0.576923 | 5.2:+36127952 | None:intergenic |
| AGACTGGAATGGAAGAGGCT+GGG | 0.582182 | 5.2:-36125749 | MS.gene40857:CDS |
| GGTAGGTATGCTGAGGAAGA+CGG | 0.584747 | 5.2:+36127920 | None:intergenic |
| TCATGGCATCATCAGGGCAC+AGG | 0.595088 | 5.2:-36125294 | MS.gene40857:CDS |
| TATGCTTGCTGTAATCACTT+CGG | 0.598723 | 5.2:+36127276 | None:intergenic |
| AATTGGTGATTGAGTAATCG+AGG | 0.601775 | 5.2:+36127899 | None:intergenic |
| TCATTGAAAGAAGGAAACAT+AGG | 0.602866 | 5.2:-36126317 | MS.gene40857:intron |
| GTGTGCTCATGGCATCATCA+GGG | 0.603350 | 5.2:-36125300 | MS.gene40857:CDS |
| AGAGCAAGGGAGGTGCCATA+GGG | 0.611608 | 5.2:-36128011 | MS.gene40857:CDS |
| CTTGACCTCCCATAAACTGA+AGG | 0.611748 | 5.2:+36125689 | None:intergenic |
| GCCATTGCAAACATTACTGA+GGG | 0.615245 | 5.2:+36127370 | None:intergenic |
| TGCCATTGCAAACATTACTG+AGG | 0.624016 | 5.2:+36127369 | None:intergenic |
| TTGACTCTGTTAGAAAGGCG+AGG | 0.632473 | 5.2:-36127943 | MS.gene40857:CDS |
| TGATAATCAAGCTAAGCTCA+AGG | 0.636705 | 5.2:-36126964 | MS.gene40857:CDS |
| AATGGCCTTCAGTTTATGGG+AGG | 0.649540 | 5.2:-36125694 | MS.gene40857:CDS |
| TATTTGGTGGAGAGCAAGGG+AGG | 0.652359 | 5.2:-36128021 | MS.gene40857:CDS |
| GGCCATTCCCAAATCCACAA+AGG | 0.662272 | 5.2:+36125710 | None:intergenic |
| TAATCGAGGTAGGTATGCTG+AGG | 0.665561 | 5.2:+36127913 | None:intergenic |
| GTAATGTTTGCAATGGCAGG+TGG | 0.686758 | 5.2:-36127364 | MS.gene40857:CDS |
| GCGGTGTAAACATTCAGATG+GGG | 0.700637 | 5.2:+36125883 | None:intergenic |
| TAGAGCAAATGCATACTGTG+TGG | 0.706616 | 5.2:+36127315 | None:intergenic |
| GAAGAACATATATCTTACTG+GGG | 0.713784 | 5.2:-36125354 | MS.gene40857:CDS |
| ACTTAGCAACAAATGACCAG+TGG | 0.727226 | 5.2:-36125927 | MS.gene40857:CDS |
| ACTGTGTGGACAGATTCCCA+AGG | 0.729854 | 5.2:+36127329 | None:intergenic |
| ACTTGGGTAAGTTCAAGACA+GGG | 0.732443 | 5.2:+36125794 | None:intergenic |
| TGGGTAAGTTCAAGACAGGG+TGG | 0.743598 | 5.2:+36125797 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATAATAGTTAAATCAA+AGG | - | chr5.2:36127084-36127103 | MS.gene40857:CDS | 10.0% |
| !! | TAGGAAAATATTATTTATTA+AGG | - | chr5.2:36125554-36125573 | MS.gene40857:intron | 10.0% |
| !! | AATTGAAACTATAAATTTCA+AGG | + | chr5.2:36126890-36126909 | None:intergenic | 15.0% |
| !! | ATGTAAATAAACCTTTATAA+AGG | - | chr5.2:36126605-36126624 | MS.gene40857:intron | 15.0% |
| !! | CTTCTTTAGTTATATAAATT+TGG | - | chr5.2:36126925-36126944 | MS.gene40857:intron | 15.0% |
| !! | TATGTTATATATATTGAGAA+TGG | + | chr5.2:36127808-36127827 | None:intergenic | 15.0% |
| !! | TTAGTTATATAAATTTGGTA+GGG | - | chr5.2:36126930-36126949 | MS.gene40857:intron | 15.0% |
| !! | TTTAGTTATATAAATTTGGT+AGG | - | chr5.2:36126929-36126948 | MS.gene40857:intron | 15.0% |
| !!! | ATAAATTGGTTTTGAAATAT+TGG | - | chr5.2:36125770-36125789 | MS.gene40857:CDS | 15.0% |
| !!! | ATGAATATTTTTCATTGTAA+TGG | - | chr5.2:36125685-36125704 | MS.gene40857:CDS | 15.0% |
| !!! | TAAATTGGTTTTGAAATATT+GGG | - | chr5.2:36125771-36125790 | MS.gene40857:CDS | 15.0% |
| !!! | TAATTTTCTATTGATTATGT+CGG | + | chr5.2:36126080-36126099 | None:intergenic | 15.0% |
| !!! | TTTTCTTTCTTTCTTTTAAA+AGG | + | chr5.2:36126513-36126532 | None:intergenic | 15.0% |
| !! | TATTATTTATTAAGGCATGT+CGG | - | chr5.2:36125562-36125581 | MS.gene40857:intron | 20.0% |
| !! | TCATCATTGACAAATTATTT+GGG | - | chr5.2:36127537-36127556 | MS.gene40857:intron | 20.0% |
| !! | TTGTGTTATCATAAGAAAAT+AGG | - | chr5.2:36125535-36125554 | MS.gene40857:intron | 20.0% |
| !!! | AAATTGGTTTTGAAATATTG+GGG | - | chr5.2:36125772-36125791 | MS.gene40857:CDS | 20.0% |
| !!! | ATCAATTTTAGTATCATTTC+AGG | + | chr5.2:36125735-36125754 | None:intergenic | 20.0% |
| !!! | TATGTTGTTTATGTTTATTG+TGG | - | chr5.2:36127980-36127999 | MS.gene40857:CDS | 20.0% |
| !!! | TTCTTTCTTTTAAAAGGAAA+AGG | + | chr5.2:36126507-36126526 | None:intergenic | 20.0% |
| ! | AATACAGTAGAATTCAATAC+TGG | + | chr5.2:36126182-36126201 | None:intergenic | 25.0% |
| ! | AGATACTGAAAAATAGAAGA+AGG | + | chr5.2:36127451-36127470 | None:intergenic | 25.0% |
| ! | AGTTATGAGTTATGATTCAT+TGG | + | chr5.2:36126740-36126759 | None:intergenic | 25.0% |
| ! | ATTATCATTGCGTTTACATT+TGG | - | chr5.2:36125444-36125463 | MS.gene40857:intron | 25.0% |
| ! | ATTATTTATTAAGGCATGTC+GGG | - | chr5.2:36125563-36125582 | MS.gene40857:intron | 25.0% |
| ! | CAATCACAAACTAAATCAAA+CGG | - | chr5.2:36127780-36127799 | MS.gene40857:intron | 25.0% |
| ! | CACTGTTTAGAAACAAAAAT+AGG | - | chr5.2:36126547-36126566 | MS.gene40857:intron | 25.0% |
| ! | GTCATCATTGACAAATTATT+TGG | - | chr5.2:36127536-36127555 | MS.gene40857:intron | 25.0% |
| ! | GTCATCCAAAAAGTAATTTA+AGG | + | chr5.2:36126233-36126252 | None:intergenic | 25.0% |
| ! | TGAACAATTAGTAATACCTA+GGG | - | chr5.2:36125800-36125819 | MS.gene40857:CDS | 25.0% |
| ! | TGTTAATCATAAACAGACAA+AGG | - | chr5.2:36125589-36125608 | MS.gene40857:intron | 25.0% |
| ! | TTGAACAATTAGTAATACCT+AGG | - | chr5.2:36125799-36125818 | MS.gene40857:CDS | 25.0% |
| !! | ATAATTTGTCAATGATGACT+TGG | + | chr5.2:36127535-36127554 | None:intergenic | 25.0% |
| !! | TAATTTGTCAATGATGACTT+GGG | + | chr5.2:36127534-36127553 | None:intergenic | 25.0% |
| !!! | AATAGTTCCCTCTATTTTTA+AGG | + | chr5.2:36126693-36126712 | None:intergenic | 25.0% |
| !!! | CACAACCTTAAATTACTTTT+TGG | - | chr5.2:36126225-36126244 | MS.gene40857:intron | 25.0% |
| !!! | TCAGTATCTTGTTTTGTTAT+CGG | - | chr5.2:36127462-36127481 | MS.gene40857:intron | 25.0% |
| !!! | TTGTTTTGTTTGGAGAATAT+AGG | - | chr5.2:36127922-36127941 | MS.gene40857:CDS | 25.0% |
| AAATCAAAGGATCTTGAAAG+TGG | - | chr5.2:36127097-36127116 | MS.gene40857:intron | 30.0% | |
| AACTTTGTTCAATTTGTCAC+AGG | - | chr5.2:36126202-36126221 | MS.gene40857:CDS | 30.0% | |
| ACTATGGTTAATCCAATCAA+AGG | + | chr5.2:36127318-36127337 | None:intergenic | 30.0% | |
| AGCAGTACCTTAAAAATAGA+GGG | - | chr5.2:36126683-36126702 | MS.gene40857:intron | 30.0% | |
| AGGAAGAACATATATCTTAC+TGG | - | chr5.2:36127953-36127972 | MS.gene40857:CDS | 30.0% | |
| AGTGGCACAGTTTAAAAAAA+GGG | - | chr5.2:36127400-36127419 | MS.gene40857:intron | 30.0% | |
| AGTTAGTATACAGTGTTCAA+AGG | + | chr5.2:36126472-36126491 | None:intergenic | 30.0% | |
| CAATACTGGATTATGTTGAA+GGG | + | chr5.2:36126168-36126187 | None:intergenic | 30.0% | |
| GAAGAACATATATCTTACTG+GGG | - | chr5.2:36127955-36127974 | MS.gene40857:CDS | 30.0% | |
| GATTGTTACTGCTAATAAAG+AGG | - | chr5.2:36126763-36126782 | MS.gene40857:intron | 30.0% | |
| GGAAGAACATATATCTTACT+GGG | - | chr5.2:36127954-36127973 | MS.gene40857:CDS | 30.0% | |
| TACTGAAAAATAGAAGAAGG+CGG | + | chr5.2:36127448-36127467 | None:intergenic | 30.0% | |
| TCAATACTGGATTATGTTGA+AGG | + | chr5.2:36126169-36126188 | None:intergenic | 30.0% | |
| TCATTGAAAGAAGGAAACAT+AGG | - | chr5.2:36126992-36127011 | MS.gene40857:CDS | 30.0% | |
| TCTAAACAGTGCGTAAATAA+GGG | + | chr5.2:36126538-36126557 | None:intergenic | 30.0% | |
| TCTGAGAATCACCTTTATAA+AGG | + | chr5.2:36126619-36126638 | None:intergenic | 30.0% | |
| TGAATTTGCGATTACAAAGT+TGG | + | chr5.2:36127760-36127779 | None:intergenic | 30.0% | |
| TTACTCAATCACCAATTTCT+TGG | - | chr5.2:36125416-36125435 | MS.gene40857:CDS | 30.0% | |
| TTCTAAACAGTGCGTAAATA+AGG | + | chr5.2:36126539-36126558 | None:intergenic | 30.0% | |
| TTCTGCAGAAAAATTGAAAG+CGG | - | chr5.2:36127126-36127145 | MS.gene40857:intron | 30.0% | |
| TTTATGTTTATTGTGGCTGT+TGG | - | chr5.2:36127987-36128006 | MS.gene40857:CDS | 30.0% | |
| ! | AAAAATAGGAATTGCCACTT+TGG | - | chr5.2:36126561-36126580 | MS.gene40857:intron | 30.0% |
| ! | ATTGTTACTTGCAGGATAAT+TGG | - | chr5.2:36125916-36125935 | MS.gene40857:CDS | 30.0% |
| ! | CTTCATAAATTGTTACTTGC+AGG | - | chr5.2:36125908-36125927 | MS.gene40857:CDS | 30.0% |
| ! | GATTACAAAGTTGGCTTATA+TGG | + | chr5.2:36127751-36127770 | None:intergenic | 30.0% |
| ! | GCAAGTTGAGTTAAGAAATT+TGG | + | chr5.2:36125498-36125517 | None:intergenic | 30.0% |
| ! | TTTGAATGTGTTGATGAAAC+AGG | - | chr5.2:36127869-36127888 | MS.gene40857:CDS | 30.0% |
| !! | AAAATAGGAATTGCCACTTT+GGG | - | chr5.2:36126562-36126581 | MS.gene40857:intron | 30.0% |
| !! | GAAGTTGATAATCATACGAA+GGG | + | chr5.2:36126450-36126469 | None:intergenic | 30.0% |
| !! | TTTCTTGATTTTGATGAGTG+CGG | - | chr5.2:36126839-36126858 | MS.gene40857:intron | 30.0% |
| !! | TTTTGGGGAATTGTTTTGTT+TGG | - | chr5.2:36127912-36127931 | MS.gene40857:CDS | 30.0% |
| !!! | ATCAGAAACTTTGTTTTTCC+AGG | - | chr5.2:36126966-36126985 | MS.gene40857:CDS | 30.0% |
| !!! | TCAGAAACTTTGTTTTTCCA+GGG | - | chr5.2:36126967-36126986 | MS.gene40857:CDS | 30.0% |
| AAAATACTCAAACCTTCCCT+AGG | + | chr5.2:36125819-36125838 | None:intergenic | 35.0% | |
| AAACTATCATTCTACCAGTG+AGG | + | chr5.2:36125615-36125634 | None:intergenic | 35.0% | |
| AATTATTTGGGAGACTGGAA+TGG | - | chr5.2:36127549-36127568 | MS.gene40857:intron | 35.0% | |
| ACATTTGGTCAGATAGGAAA+TGG | - | chr5.2:36125459-36125478 | MS.gene40857:intron | 35.0% | |
| AGAATCTTGTTAAACTCACC+TGG | + | chr5.2:36127674-36127693 | None:intergenic | 35.0% | |
| AGTATGCATTTGCTCTAGTT+GGG | - | chr5.2:36126000-36126019 | MS.gene40857:CDS | 35.0% | |
| CAATTAGTAATACCTAGGGA+AGG | - | chr5.2:36125804-36125823 | MS.gene40857:CDS | 35.0% | |
| CAGTGGCACAGTTTAAAAAA+AGG | - | chr5.2:36127399-36127418 | MS.gene40857:intron | 35.0% | |
| CATTTGGTCAGATAGGAAAT+GGG | - | chr5.2:36125460-36125479 | MS.gene40857:intron | 35.0% | |
| GAGCAGTACCTTAAAAATAG+AGG | - | chr5.2:36126682-36126701 | MS.gene40857:intron | 35.0% | |
| GATAATAGCAGCCAAGAAAT+TGG | + | chr5.2:36125430-36125449 | None:intergenic | 35.0% | |
| GCAAGCATAACTGTTGTTAT+AGG | - | chr5.2:36126047-36126066 | MS.gene40857:intron | 35.0% | |
| GGAGAATATAGGAAATCATC+AGG | - | chr5.2:36127933-36127952 | MS.gene40857:CDS | 35.0% | |
| GGTTCAAATCCTTCAAAACA+CGG | - | chr5.2:36125706-36125725 | MS.gene40857:CDS | 35.0% | |
| GTAAGCACACAATACATACA+TGG | + | chr5.2:36126398-36126417 | None:intergenic | 35.0% | |
| TCCAACAAGGTTCAACTTAA+AGG | - | chr5.2:36127023-36127042 | MS.gene40857:CDS | 35.0% | |
| TCTGCAGAAAAATTGAAAGC+GGG | - | chr5.2:36127127-36127146 | MS.gene40857:intron | 35.0% | |
| TGACAAATTATTTGGGAGAC+TGG | - | chr5.2:36127544-36127563 | MS.gene40857:intron | 35.0% | |
| TGAGAACAGAAGAGCTATTA+AGG | - | chr5.2:36127174-36127193 | MS.gene40857:intron | 35.0% | |
| TGATAATCAAGCTAAGCTCA+AGG | - | chr5.2:36126345-36126364 | MS.gene40857:intron | 35.0% | |
| TGATAATCATACGAAGGGAT+CGG | + | chr5.2:36126445-36126464 | None:intergenic | 35.0% | |
| TTTGGGAAAAGACCTTTGAT+TGG | - | chr5.2:36127303-36127322 | MS.gene40857:CDS | 35.0% | |
| ! | AATTGGTGATTGAGTAATCG+AGG | + | chr5.2:36125413-36125432 | None:intergenic | 35.0% |
| ! | TTAACCATAGTTTTCTTCGC+TGG | - | chr5.2:36127327-36127346 | MS.gene40857:CDS | 35.0% |
| ! | TTTCTTAACTCAACTTGCTC+AGG | - | chr5.2:36125500-36125519 | MS.gene40857:intron | 35.0% |
| ! | TTTGTTGCTAAGTTGAATGC+TGG | + | chr5.2:36127375-36127394 | None:intergenic | 35.0% |
| !! | GGAAGTTGATAATCATACGA+AGG | + | chr5.2:36126451-36126470 | None:intergenic | 35.0% |
| !! | TATGCTTGCTGTAATCACTT+CGG | + | chr5.2:36126036-36126055 | None:intergenic | 35.0% |
| !! | TCCTTTAAGTTGAACCTTGT+TGG | + | chr5.2:36127027-36127046 | None:intergenic | 35.0% |
| !! | TTTAAGTTGAACCTTGTTGG+AGG | + | chr5.2:36127024-36127043 | None:intergenic | 35.0% |
| !!! | AGTTGGTTGTTTTTTGGTTG+CGG | - | chr5.2:36126285-36126304 | MS.gene40857:intron | 35.0% |
| !!! | CTGTTTTGACTCTGTTAGAA+AGG | - | chr5.2:36125361-36125380 | MS.gene40857:CDS | 35.0% |
| !!! | CTTTTTTTAAACTGTGCCAC+TGG | + | chr5.2:36127401-36127420 | None:intergenic | 35.0% |
| !!! | TGTTGGCTCTTTTCTTCTTA+GGG | - | chr5.2:36125328-36125347 | MS.gene40857:CDS | 35.0% |
| AACTCCTGGGAAAAGAATCT+CGG | + | chr5.2:36126269-36126288 | None:intergenic | 40.0% | |
| ACCAAAAAACAACCAACTCC+TGG | + | chr5.2:36126283-36126302 | None:intergenic | 40.0% | |
| ACTTAGCAACAAATGACCAG+TGG | - | chr5.2:36127382-36127401 | MS.gene40857:CDS | 40.0% | |
| ACTTGGGTAAGTTCAAGACA+GGG | + | chr5.2:36127518-36127537 | None:intergenic | 40.0% | |
| AGCTATGATTGTTCCCAAAG+TGG | + | chr5.2:36126578-36126597 | None:intergenic | 40.0% | |
| ATAGGTAAGAACCTCCAACA+AGG | - | chr5.2:36127010-36127029 | MS.gene40857:CDS | 40.0% | |
| CAGTATGCATTTGCTCTAGT+TGG | - | chr5.2:36125999-36126018 | MS.gene40857:CDS | 40.0% | |
| CCAAAAAACAACCAACTCCT+GGG | + | chr5.2:36126282-36126301 | None:intergenic | 40.0% | |
| CGCAGACACTGAGAATAAAT+TGG | - | chr5.2:36125756-36125775 | MS.gene40857:CDS | 40.0% | |
| CTGGTTTCCTTTGTGGATTT+GGG | - | chr5.2:36127592-36127611 | MS.gene40857:intron | 40.0% | |
| GACGAGTTCTCGTTAGATAT+CGG | + | chr5.2:36127724-36127743 | None:intergenic | 40.0% | |
| GATTCATTGGACGAGAGAAA+AGG | + | chr5.2:36126727-36126746 | None:intergenic | 40.0% | |
| GATTCCAGCGAAGAAAACTA+TGG | + | chr5.2:36127334-36127353 | None:intergenic | 40.0% | |
| GCCATTGCAAACATTACTGA+GGG | + | chr5.2:36125942-36125961 | None:intergenic | 40.0% | |
| GCGTTTACATTTGGTCAGAT+AGG | - | chr5.2:36125453-36125472 | MS.gene40857:intron | 40.0% | |
| GCTCAAAAAAGTGATTGAGC+TGG | + | chr5.2:36126666-36126685 | None:intergenic | 40.0% | |
| TACTCTTAAAGTTTCGCTGC+AGG | - | chr5.2:36127278-36127297 | MS.gene40857:CDS | 40.0% | |
| TAGAGCAAATGCATACTGTG+TGG | + | chr5.2:36125997-36126016 | None:intergenic | 40.0% | |
| TCAGTAATGTTTGCAATGGC+AGG | - | chr5.2:36125942-36125961 | MS.gene40857:CDS | 40.0% | |
| TCTAACAGAGTCAAAACAGC+AGG | + | chr5.2:36125360-36125379 | None:intergenic | 40.0% | |
| TGCCATTGCAAACATTACTG+AGG | + | chr5.2:36125943-36125962 | None:intergenic | 40.0% | |
| TTCCTTTGTGGATTTGGGAA+TGG | - | chr5.2:36127597-36127616 | MS.gene40857:intron | 40.0% | |
| ! | AAAGTTTCGCTGCAGGTTTT+TGG | - | chr5.2:36127285-36127304 | MS.gene40857:CDS | 40.0% |
| ! | AAGTTTCGCTGCAGGTTTTT+GGG | - | chr5.2:36127286-36127305 | MS.gene40857:CDS | 40.0% |
| ! | ATGTATTTGGTGGAGAGCAA+GGG | - | chr5.2:36125285-36125304 | MS.gene40857:CDS | 40.0% |
| ! | CTCTTTTCTTCTTAGGGACA+TGG | - | chr5.2:36125334-36125353 | MS.gene40857:CDS | 40.0% |
| ! | GTTCTGAATTTCAGTTGCTG+TGG | - | chr5.2:36126807-36126826 | MS.gene40857:intron | 40.0% |
| ! | TAACTCAACTTGCTCAGGTT+TGG | - | chr5.2:36125505-36125524 | MS.gene40857:intron | 40.0% |
| ! | TTCCACTTGTGAGCACTTTT+TGG | - | chr5.2:36127895-36127914 | MS.gene40857:CDS | 40.0% |
| !! | TCCACTTGTGAGCACTTTTT+GGG | - | chr5.2:36127896-36127915 | MS.gene40857:CDS | 40.0% |
| !!! | CTGTTGGCTCTTTTCTTCTT+AGG | - | chr5.2:36125327-36125346 | MS.gene40857:CDS | 40.0% |
| !!! | TTTTTGGTTGCGGTTTGTCT+AGG | - | chr5.2:36126295-36126314 | MS.gene40857:intron | 40.0% |
| AATGGCCTTCAGTTTATGGG+AGG | - | chr5.2:36127615-36127634 | MS.gene40857:intron | 45.0% | |
| ACAAAGGAAACCAGCCAACA+AGG | + | chr5.2:36127586-36127605 | None:intergenic | 45.0% | |
| AGGCGGTGTAAACATTCAGA+TGG | + | chr5.2:36127431-36127450 | None:intergenic | 45.0% | |
| AGTTCAAGACAGGGTGGTAA+AGG | + | chr5.2:36127509-36127528 | None:intergenic | 45.0% | |
| ATTTGCTCTAGTTGGGCTGT+CGG | - | chr5.2:36126007-36126026 | MS.gene40857:CDS | 45.0% | |
| CTTGACCTCCCATAAACTGA+AGG | + | chr5.2:36127623-36127642 | None:intergenic | 45.0% | |
| GACTTGGGTAAGTTCAAGAC+AGG | + | chr5.2:36127519-36127538 | None:intergenic | 45.0% | |
| GCCCTCAGTAATGTTTGCAA+TGG | - | chr5.2:36125938-36125957 | MS.gene40857:CDS | 45.0% | |
| GCGGTGTAAACATTCAGATG+GGG | + | chr5.2:36127429-36127448 | None:intergenic | 45.0% | |
| GGCGGTGTAAACATTCAGAT+GGG | + | chr5.2:36127430-36127449 | None:intergenic | 45.0% | |
| GGGAATGGCCTTCAGTTTAT+GGG | - | chr5.2:36127612-36127631 | MS.gene40857:intron | 45.0% | |
| GGTGATTGAGTAATCGAGGT+AGG | + | chr5.2:36125409-36125428 | None:intergenic | 45.0% | |
| GTAATGTTTGCAATGGCAGG+TGG | - | chr5.2:36125945-36125964 | MS.gene40857:CDS | 45.0% | |
| TAAACAGACAAAGGCCTCAC+TGG | - | chr5.2:36125598-36125617 | MS.gene40857:intron | 45.0% | |
| TAATCGAGGTAGGTATGCTG+AGG | + | chr5.2:36125399-36125418 | None:intergenic | 45.0% | |
| TCCAGGGACTCATTGAAAGA+AGG | - | chr5.2:36126983-36127002 | MS.gene40857:CDS | 45.0% | |
| TCCTTCTTTCAATGAGTCCC+TGG | + | chr5.2:36126987-36127006 | None:intergenic | 45.0% | |
| TGGACGAGAGAAAAGGAGTT+TGG | + | chr5.2:36126720-36126739 | None:intergenic | 45.0% | |
| TGGGAATGGCCTTCAGTTTA+TGG | - | chr5.2:36127611-36127630 | MS.gene40857:intron | 45.0% | |
| TTGACTCTGTTAGAAAGGCG+AGG | - | chr5.2:36125366-36125385 | MS.gene40857:CDS | 45.0% | |
| ! | AAAGCCGAGATTCTTTTCCC+AGG | - | chr5.2:36126262-36126281 | MS.gene40857:intron | 45.0% |
| ! | GAGATTCTTTTCCCAGGAGT+TGG | - | chr5.2:36126268-36126287 | MS.gene40857:intron | 45.0% |
| ! | GCTGGTTTCCTTTGTGGATT+TGG | - | chr5.2:36127591-36127610 | MS.gene40857:intron | 45.0% |
| !! | CCACTTGTGAGCACTTTTTG+GGG | - | chr5.2:36127897-36127916 | MS.gene40857:CDS | 45.0% |
| !! | TTCAGGTGTCCGTGTTTTGA+AGG | + | chr5.2:36125718-36125737 | None:intergenic | 45.0% |
| !! | TTGTTGGCTGGTTTCCTTTG+TGG | - | chr5.2:36127585-36127604 | MS.gene40857:intron | 45.0% |
| !!! | CCCAGGAGTTGGTTGTTTTT+TGG | - | chr5.2:36126279-36126298 | MS.gene40857:intron | 45.0% |
| ACTGTGTGGACAGATTCCCA+AGG | + | chr5.2:36125983-36126002 | None:intergenic | 50.0% | |
| AGACTGGAATGGAAGAGGCT+GGG | - | chr5.2:36127560-36127579 | MS.gene40857:intron | 50.0% | |
| ATCATACGAAGGGATCGGCA+AGG | + | chr5.2:36126440-36126459 | None:intergenic | 50.0% | |
| GGCCATTCCCAAATCCACAA+AGG | + | chr5.2:36127602-36127621 | None:intergenic | 50.0% | |
| GGTAGGTATGCTGAGGAAGA+CGG | + | chr5.2:36125392-36125411 | None:intergenic | 50.0% | |
| GTGTGCTCATGGCATCATCA+GGG | - | chr5.2:36128009-36128028 | MS.gene40857:CDS | 50.0% | |
| TCATACGAAGGGATCGGCAA+GGG | + | chr5.2:36126439-36126458 | None:intergenic | 50.0% | |
| TGGACAGATTCCCAAGGCTA+AGG | + | chr5.2:36125977-36125996 | None:intergenic | 50.0% | |
| TGGGTAAGTTCAAGACAGGG+TGG | + | chr5.2:36127515-36127534 | None:intergenic | 50.0% | |
| TTGGGAGACTGGAATGGAAG+AGG | - | chr5.2:36127555-36127574 | MS.gene40857:intron | 50.0% | |
| TTTATGGGAGGTCAAGCTGC+TGG | - | chr5.2:36127627-36127646 | MS.gene40857:intron | 50.0% | |
| ! | TATTTGGTGGAGAGCAAGGG+AGG | - | chr5.2:36125288-36125307 | MS.gene40857:CDS | 50.0% |
| !! | CCCCAAAAAGTGCTCACAAG+TGG | + | chr5.2:36127900-36127919 | None:intergenic | 50.0% |
| AGCCAACAGCATGCACCCTA+TGG | + | chr5.2:36125316-36125335 | None:intergenic | 55.0% | |
| CATACGAAGGGATCGGCAAG+GGG | + | chr5.2:36126438-36126457 | None:intergenic | 55.0% | |
| GAGACTGGAATGGAAGAGGC+TGG | - | chr5.2:36127559-36127578 | MS.gene40857:intron | 55.0% | |
| GGTGTGCTCATGGCATCATC+AGG | - | chr5.2:36128008-36128027 | MS.gene40857:CDS | 55.0% | |
| GTTTGCAATGGCAGGTGGTG+TGG | - | chr5.2:36125950-36125969 | MS.gene40857:CDS | 55.0% | |
| TCATGGCATCATCAGGGCAC+AGG | - | chr5.2:36128015-36128034 | MS.gene40857:CDS | 55.0% | |
| TGCCATAGGGTGCATGCTGT+TGG | - | chr5.2:36125311-36125330 | MS.gene40857:CDS | 55.0% | |
| TGTGGCTGTTGGTGTGCTCA+TGG | - | chr5.2:36127998-36128017 | MS.gene40857:CDS | 55.0% | |
| ! | GTGGTGTGGTCCTTAGCCTT+GGG | - | chr5.2:36125964-36125983 | MS.gene40857:CDS | 55.0% |
| !! | AGAGCAAGGGAGGTGCCATA+GGG | - | chr5.2:36125298-36125317 | MS.gene40857:CDS | 55.0% |
| GGTGGTGTGGTCCTTAGCCT+TGG | - | chr5.2:36125963-36125982 | MS.gene40857:CDS | 60.0% | |
| TGCAGCAGCTGATGCTGTCC+AGG | - | chr5.2:36127653-36127672 | MS.gene40857:intron | 60.0% | |
| ! | TGGAAGAGGCTGGGCCTTGT+TGG | - | chr5.2:36127569-36127588 | MS.gene40857:intron | 60.0% |
| !! | GAGAGCAAGGGAGGTGCCAT+AGG | - | chr5.2:36125297-36125316 | MS.gene40857:CDS | 60.0% |
| !! | AGAGGCTGGGCCTTGTTGGC+TGG | - | chr5.2:36127573-36127592 | MS.gene40857:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 36125285 | 36128046 | 36125285 | ID=MS.gene40857 |
| chr5.2 | mRNA | 36125285 | 36128046 | 36125285 | ID=MS.gene40857.t1;Parent=MS.gene40857 |
| chr5.2 | exon | 36127810 | 36128046 | 36127810 | ID=MS.gene40857.t1.exon1;Parent=MS.gene40857.t1 |
| chr5.2 | CDS | 36127810 | 36128046 | 36127810 | ID=cds.MS.gene40857.t1;Parent=MS.gene40857.t1 |
| chr5.2 | exon | 36127263 | 36127401 | 36127263 | ID=MS.gene40857.t1.exon2;Parent=MS.gene40857.t1 |
| chr5.2 | CDS | 36127263 | 36127401 | 36127263 | ID=cds.MS.gene40857.t1;Parent=MS.gene40857.t1 |
| chr5.2 | exon | 36126933 | 36127107 | 36126933 | ID=MS.gene40857.t1.exon3;Parent=MS.gene40857.t1 |
| chr5.2 | CDS | 36126933 | 36127107 | 36126933 | ID=cds.MS.gene40857.t1;Parent=MS.gene40857.t1 |
| chr5.2 | exon | 36126318 | 36126343 | 36126318 | ID=MS.gene40857.t1.exon4;Parent=MS.gene40857.t1 |
| chr5.2 | CDS | 36126318 | 36126343 | 36126318 | ID=cds.MS.gene40857.t1;Parent=MS.gene40857.t1 |
| chr5.2 | exon | 36126136 | 36126236 | 36126136 | ID=MS.gene40857.t1.exon5;Parent=MS.gene40857.t1 |
| chr5.2 | CDS | 36126136 | 36126236 | 36126136 | ID=cds.MS.gene40857.t1;Parent=MS.gene40857.t1 |
| chr5.2 | exon | 36125657 | 36126031 | 36125657 | ID=MS.gene40857.t1.exon6;Parent=MS.gene40857.t1 |
| chr5.2 | CDS | 36125657 | 36126031 | 36125657 | ID=cds.MS.gene40857.t1;Parent=MS.gene40857.t1 |
| chr5.2 | exon | 36125285 | 36125440 | 36125285 | ID=MS.gene40857.t1.exon7;Parent=MS.gene40857.t1 |
| chr5.2 | CDS | 36125285 | 36125440 | 36125285 | ID=cds.MS.gene40857.t1;Parent=MS.gene40857.t1 |
| Gene Sequence |
| Protein sequence |
