Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054720.t1 | XP_013453837.1 | 98.3 | 402 | 7 | 0 | 1 | 402 | 27 | 428 | 1.10E-222 | 782.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054720.t1 | Q9ZQ89 | 79.8 | 401 | 78 | 2 | 1 | 401 | 1 | 398 | 6.3e-176 | 618.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054720.t1 | G7JZ34 | 98.3 | 402 | 7 | 0 | 1 | 402 | 1 | 402 | 7.6e-223 | 782.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050559 | MS.gene054720 | 0.809004 | 2.34E-50 | -1.69E-46 |
| MS.gene050561 | MS.gene054720 | 0.801432 | 9.03E-49 | -1.69E-46 |
| MS.gene050562 | MS.gene054720 | 0.809135 | 2.20E-50 | -1.69E-46 |
| MS.gene054720 | MS.gene061729 | 0.80397 | 2.70E-49 | -1.69E-46 |
| MS.gene054720 | MS.gene06643 | 0.80176 | 7.73E-49 | -1.69E-46 |
| MS.gene054720 | MS.gene06857 | 0.800595 | 1.34E-48 | -1.69E-46 |
| MS.gene054720 | MS.gene40857 | 0.825943 | 3.56E-54 | -1.69E-46 |
| MS.gene054720 | MS.gene98064 | 0.886624 | 2.91E-72 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054720.t1 | MTR_5g045520 | 98.259 | 402 | 7 | 0 | 1 | 402 | 27 | 428 | 0.0 | 808 |
| MS.gene054720.t1 | MTR_5g045520 | 98.259 | 402 | 7 | 0 | 1 | 402 | 1 | 402 | 0.0 | 806 |
| MS.gene054720.t1 | MTR_5g044710 | 81.728 | 405 | 62 | 4 | 1 | 401 | 1 | 397 | 0.0 | 641 |
| MS.gene054720.t1 | MTR_5g045530 | 79.208 | 404 | 78 | 3 | 1 | 401 | 1 | 401 | 0.0 | 601 |
| MS.gene054720.t1 | MTR_5g044710 | 82.263 | 327 | 49 | 3 | 79 | 401 | 2 | 323 | 0.0 | 511 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054720.t1 | AT2G03530 | 79.800 | 401 | 78 | 2 | 1 | 401 | 1 | 398 | 0.0 | 625 |
| MS.gene054720.t1 | AT2G03530 | 79.800 | 401 | 78 | 2 | 1 | 401 | 1 | 398 | 0.0 | 625 |
| MS.gene054720.t1 | AT2G03530 | 79.683 | 379 | 74 | 2 | 1 | 379 | 1 | 376 | 0.0 | 592 |
| MS.gene054720.t1 | AT2G03590 | 74.314 | 401 | 92 | 3 | 1 | 401 | 1 | 390 | 0.0 | 581 |
| MS.gene054720.t1 | AT2G03590 | 74.314 | 401 | 92 | 3 | 1 | 401 | 1 | 390 | 0.0 | 581 |
| MS.gene054720.t1 | AT2G03520 | 70.823 | 401 | 117 | 0 | 1 | 401 | 1 | 401 | 0.0 | 559 |
| MS.gene054720.t1 | AT1G26440 | 68.486 | 403 | 123 | 2 | 1 | 401 | 9 | 409 | 0.0 | 537 |
| MS.gene054720.t1 | AT1G26440 | 68.486 | 403 | 123 | 2 | 1 | 401 | 9 | 409 | 0.0 | 537 |
| MS.gene054720.t1 | AT1G26440 | 62.531 | 403 | 111 | 3 | 1 | 401 | 9 | 373 | 1.86e-166 | 471 |
| MS.gene054720.t1 | AT2G03530 | 77.532 | 316 | 68 | 2 | 86 | 401 | 1 | 313 | 1.88e-166 | 469 |
| MS.gene054720.t1 | AT2G03530 | 77.532 | 316 | 68 | 2 | 86 | 401 | 1 | 313 | 1.88e-166 | 469 |
| MS.gene054720.t1 | AT1G26440 | 62.035 | 403 | 114 | 3 | 1 | 401 | 9 | 374 | 4.09e-166 | 471 |
| MS.gene054720.t1 | AT1G26440 | 67.802 | 323 | 102 | 1 | 79 | 401 | 16 | 336 | 4.17e-153 | 436 |
| MS.gene054720.t1 | AT1G26440 | 67.802 | 323 | 102 | 1 | 79 | 401 | 16 | 336 | 4.17e-153 | 436 |
| MS.gene054720.t1 | AT2G03600 | 62.682 | 343 | 104 | 5 | 1 | 337 | 1 | 325 | 2.03e-147 | 422 |
| MS.gene054720.t1 | AT2G03600 | 61.652 | 339 | 106 | 4 | 1 | 337 | 1 | 317 | 1.87e-145 | 416 |
| MS.gene054720.t1 | AT2G03600 | 67.528 | 271 | 73 | 2 | 1 | 271 | 1 | 256 | 1.40e-129 | 373 |
| MS.gene054720.t1 | AT2G03600 | 67.528 | 271 | 73 | 2 | 1 | 271 | 1 | 256 | 1.40e-129 | 373 |
| MS.gene054720.t1 | AT1G26440 | 59.752 | 323 | 93 | 2 | 79 | 401 | 16 | 301 | 9.03e-128 | 370 |
| MS.gene054720.t1 | AT2G03600 | 62.543 | 291 | 71 | 3 | 1 | 268 | 1 | 276 | 1.11e-123 | 359 |
| MS.gene054720.t1 | AT1G26440 | 62.030 | 266 | 99 | 1 | 136 | 401 | 84 | 347 | 5.00e-108 | 322 |
| MS.gene054720.t1 | AT1G26440 | 73.913 | 92 | 22 | 1 | 1 | 90 | 9 | 100 | 2.37e-34 | 130 |
| MS.gene054720.t1 | AT2G03600 | 65.054 | 186 | 53 | 1 | 86 | 271 | 1 | 174 | 9.43e-78 | 238 |
Find 92 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCATCATTGACAAATTATT+TGG | 0.104477 | 5.3:-32937189 | MS.gene054720:CDS |
| TGGGAATGGCCTTCAGTTTA+TGG | 0.150076 | 5.3:-32937114 | MS.gene054720:CDS |
| GCTGGTTTCCTTTGTGGATT+TGG | 0.163759 | 5.3:-32937134 | MS.gene054720:CDS |
| GCAAGTTGAGTTAAGAAATT+TGG | 0.189492 | 5.3:+32939073 | None:intergenic |
| TGGAAGAGGCTGGGCCTTGC+TGG | 0.226976 | 5.3:-32937156 | MS.gene054720:CDS |
| TTACTCAATCACCAATTTCT+TGG | 0.250935 | 5.3:-32939152 | MS.gene054720:CDS |
| CTGGTTTCCTTTGTGGATTT+GGG | 0.265773 | 5.3:-32937133 | MS.gene054720:CDS |
| TGAGAACAGAAGAGCTATTA+AGG | 0.268133 | 5.3:-32937551 | MS.gene054720:intron |
| ATTGTTACTTGCAGGATAAT+TGG | 0.271037 | 5.3:-32938810 | MS.gene054720:intron |
| CTTGAGCTTAGCTTGATTAT+CGG | 0.289315 | 5.3:+32938381 | None:intergenic |
| TGTTGAGTTGAAAATGTATT+TGG | 0.308041 | 5.3:-32939296 | None:intergenic |
| GCAAGCATAACCGTTGTTAT+AGG | 0.323418 | 5.3:-32938679 | MS.gene054720:intron |
| TTGCTGGCTGGTTTCCTTTG+TGG | 0.325240 | 5.3:-32937140 | MS.gene054720:CDS |
| TATAATAGCAGCCAAGAAAT+TGG | 0.330308 | 5.3:+32939141 | None:intergenic |
| GGGAATGGCCTTCAGTTTAT+GGG | 0.352549 | 5.3:-32937113 | MS.gene054720:CDS |
| ACATTTGGTCAGATAGGAAA+TGG | 0.356798 | 5.3:-32939109 | MS.gene054720:CDS |
| AGAGGCTGGGCCTTGCTGGC+TGG | 0.370965 | 5.3:-32937152 | MS.gene054720:CDS |
| AGGAAGAACATATATCTTAC+TGG | 0.373403 | 5.3:-32936769 | MS.gene054720:CDS |
| ATTTGCTCTAGTTGGGCTTT+CGG | 0.397670 | 5.3:-32938719 | MS.gene054720:CDS |
| CAGTATGCATTTGCTCTAGT+TGG | 0.397774 | 5.3:-32938727 | MS.gene054720:CDS |
| GGTGTGCTCATGGCATCATC+AGG | 0.399673 | 5.3:-32936714 | MS.gene054720:CDS |
| GGTGGTGTGGTCCTTAGCCT+TGG | 0.413336 | 5.3:-32938763 | MS.gene054720:CDS |
| TCATCATTGACAAATTATTT+GGG | 0.414871 | 5.3:-32937188 | MS.gene054720:CDS |
| TGACAAATTATTTGGGAGAC+TGG | 0.417397 | 5.3:-32937181 | MS.gene054720:CDS |
| TTTCTTAACTCAACTTGCTC+AGG | 0.423669 | 5.3:-32939068 | MS.gene054720:intron |
| TTCCTTTGTGGATTTGGGAA+TGG | 0.434124 | 5.3:-32937128 | MS.gene054720:CDS |
| TTTGGGAAAAGACCTTTGAT+TGG | 0.437902 | 5.3:-32937422 | MS.gene054720:CDS |
| TTTATGTTTATTGTGGCTGT+TGG | 0.443744 | 5.3:-32936735 | MS.gene054720:CDS |
| TCCAGGGACTCATTGAAAGA+AGG | 0.445559 | 5.3:-32937742 | MS.gene054720:intron |
| GAGAGCAAGGGAGGTGCCAT+AGG | 0.456449 | 5.3:-32939271 | MS.gene054720:CDS |
| AGTATGCATTTGCTCTAGTT+GGG | 0.460950 | 5.3:-32938726 | MS.gene054720:CDS |
| TGTGGCTGTTGGTGTGCTCA+TGG | 0.472927 | 5.3:-32936724 | MS.gene054720:CDS |
| GATTCCAGCGAAGAAAACTA+TGG | 0.475490 | 5.3:+32937394 | None:intergenic |
| GGAGAATATAGGAAATCATC+AGG | 0.478060 | 5.3:-32936789 | MS.gene054720:CDS |
| AATGTATTTGGTGGAGAGCA+AGG | 0.480973 | 5.3:-32939284 | MS.gene054720:CDS |
| GTGGTGTGGTCCTTAGCCTT+GGG | 0.483800 | 5.3:-32938762 | MS.gene054720:CDS |
| TCAGTAATGTTTGCAATGGC+AGG | 0.486775 | 5.3:-32938784 | MS.gene054720:CDS |
| AGTTCAAGACAGGGTGGTAA+AGG | 0.491004 | 5.3:+32937219 | None:intergenic |
| CATTTGGTCAGATAGGAAAT+GGG | 0.496722 | 5.3:-32939108 | MS.gene054720:CDS |
| GACTTGGGTAAGTTCAAGAC+AGG | 0.501949 | 5.3:+32937209 | None:intergenic |
| TGCAGCAGCTGATGCTGTCC+AGG | 0.503952 | 5.3:-32937072 | MS.gene054720:intron |
| TAAAATAATAGTTAAATCAA+AGG | 0.511500 | 5.3:-32937641 | MS.gene054720:intron |
| TGCCATAGGGTGCATGCTGT+TGG | 0.512313 | 5.3:-32939257 | MS.gene054720:CDS |
| AGCCAACAGCATGCACCCTA+TGG | 0.513094 | 5.3:+32939255 | None:intergenic |
| TATGTTGTTTATGTTTATTG+TGG | 0.518587 | 5.3:-32936742 | MS.gene054720:CDS |
| AATTATTTGGGAGACTGGAA+TGG | 0.521853 | 5.3:-32937176 | MS.gene054720:CDS |
| TTTGTTGCTAAGTTGAATGC+TGG | 0.524858 | 5.3:+32937353 | None:intergenic |
| GAGACTGGAATGGAAGAGGC+TGG | 0.524923 | 5.3:-32937166 | MS.gene054720:CDS |
| ATAATTTGTCAATGATGACT+TGG | 0.527562 | 5.3:+32937193 | None:intergenic |
| CTGTATTGACTCTGTTAGAA+AGG | 0.527795 | 5.3:-32939207 | MS.gene054720:CDS |
| TTGGGAGACTGGAATGGAAG+AGG | 0.530432 | 5.3:-32937170 | MS.gene054720:CDS |
| TGAGTTGAAAATGTATTTGG+TGG | 0.530800 | 5.3:-32939293 | None:intergenic |
| GGAAGAACATATATCTTACT+GGG | 0.545902 | 5.3:-32936768 | MS.gene054720:CDS |
| GGCGGTGTAAACATTCAGAT+GGG | 0.548193 | 5.3:+32937298 | None:intergenic |
| TTTATGGGAGGTCAAGCTGC+TGG | 0.548399 | 5.3:-32937098 | MS.gene054720:CDS |
| ACAAAGGAAACCAGCCAGCA+AGG | 0.557066 | 5.3:+32937142 | None:intergenic |
| CGGTGAGATACCTATAACAA+CGG | 0.557886 | 5.3:+32938669 | None:intergenic |
| AGGCGGTGTAAACATTCAGA+TGG | 0.559268 | 5.3:+32937297 | None:intergenic |
| TAATTTGTCAATGATGACTT+GGG | 0.560239 | 5.3:+32937194 | None:intergenic |
| GCCCTCAGTAATGTTTGCAA+TGG | 0.568356 | 5.3:-32938788 | MS.gene054720:CDS |
| ACTATGGTTAATCCAATCAA+AGG | 0.569183 | 5.3:+32937410 | None:intergenic |
| ATGTATTTGGTGGAGAGCAA+GGG | 0.570462 | 5.3:-32939283 | MS.gene054720:CDS |
| TGGACAGATTCCCAAGGCTA+AGG | 0.573485 | 5.3:+32938752 | None:intergenic |
| GGTGATTGAGTAATCGAGGT+AGG | 0.575423 | 5.3:+32939162 | None:intergenic |
| GTTTGCAATGGCAGGTGGTG+TGG | 0.575901 | 5.3:-32938776 | MS.gene054720:CDS |
| AAATCAAAGGATCTTGAAAG+TGG | 0.575914 | 5.3:-32937628 | MS.gene054720:CDS |
| TCTAACAGAGTCAATACAGC+AGG | 0.576923 | 5.3:+32939211 | None:intergenic |
| AGACTGGAATGGAAGAGGCT+GGG | 0.582182 | 5.3:-32937165 | MS.gene054720:CDS |
| GGTAGGTATGCTGAGGAAGA+CGG | 0.584747 | 5.3:+32939179 | None:intergenic |
| TCATGGCATCATCAGGGCAC+AGG | 0.595088 | 5.3:-32936707 | MS.gene054720:CDS |
| AATTGGTGATTGAGTAATCG+AGG | 0.601775 | 5.3:+32939158 | None:intergenic |
| TCATTGAAAGAAGGAAACAT+AGG | 0.602866 | 5.3:-32937733 | MS.gene054720:intron |
| GTGTGCTCATGGCATCATCA+GGG | 0.603350 | 5.3:-32936713 | MS.gene054720:CDS |
| TATGCTTGCTGTAATCACTT+CGG | 0.607518 | 5.3:+32938693 | None:intergenic |
| AGAGCAAGGGAGGTGCCATA+GGG | 0.611608 | 5.3:-32939270 | MS.gene054720:CDS |
| CTTGACCTCCCATAAACTGA+AGG | 0.611748 | 5.3:+32937105 | None:intergenic |
| CGATAATCAAGCTAAGCTCA+AGG | 0.612303 | 5.3:-32938380 | MS.gene054720:CDS |
| GCCATTGCAAACATTACTGA+GGG | 0.615245 | 5.3:+32938787 | None:intergenic |
| TGCCATTGCAAACATTACTG+AGG | 0.624016 | 5.3:+32938786 | None:intergenic |
| AATGGCCTTCAGTTTATGGG+AGG | 0.649540 | 5.3:-32937110 | MS.gene054720:CDS |
| TATTTGGTGGAGAGCAAGGG+AGG | 0.652359 | 5.3:-32939280 | MS.gene054720:CDS |
| GGCCATTCCCAAATCCACAA+AGG | 0.662272 | 5.3:+32937126 | None:intergenic |
| TTGACTCTGTTAGAAAGGCG+AGG | 0.664406 | 5.3:-32939202 | MS.gene054720:CDS |
| TAATCGAGGTAGGTATGCTG+AGG | 0.665561 | 5.3:+32939172 | None:intergenic |
| GTAATGTTTGCAATGGCAGG+TGG | 0.686758 | 5.3:-32938781 | MS.gene054720:CDS |
| GCGGTGTAAACATTCAGATG+GGG | 0.700637 | 5.3:+32937299 | None:intergenic |
| TAGAGCAAATGCATACTGTG+TGG | 0.706616 | 5.3:+32938732 | None:intergenic |
| GAAGAACATATATCTTACTG+GGG | 0.713784 | 5.3:-32936767 | MS.gene054720:CDS |
| ACTTAGCAACAAATGACCAG+TGG | 0.727226 | 5.3:-32937343 | MS.gene054720:CDS |
| ACTGTGTGGACAGATTCCCA+AGG | 0.729854 | 5.3:+32938746 | None:intergenic |
| ACTTGGGTAAGTTCAAGACA+GGG | 0.732443 | 5.3:+32937210 | None:intergenic |
| TGGGTAAGTTCAAGACAGGG+TGG | 0.743598 | 5.3:+32937213 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATAATAGTTAAATCAA+AGG | - | chr5.3:32938340-32938359 | MS.gene054720:intron | 10.0% |
| !!! | ATAAATTGATTTTGAAATAT+TGG | - | chr5.3:32937042-32937061 | MS.gene054720:intron | 10.0% |
| !!! | TAAATTGATTTTGAAATATT+GGG | - | chr5.3:32937043-32937062 | MS.gene054720:intron | 10.0% |
| !! | ATGTAAATAAACCTTTATAA+AGG | - | chr5.3:32937861-32937880 | MS.gene054720:intron | 15.0% |
| !! | CTTCTTTAGTTATATAAATT+TGG | - | chr5.3:32938181-32938200 | MS.gene054720:intron | 15.0% |
| !! | TTAGATATATTGAGAAAATT+AGG | + | chr5.3:32939063-32939082 | None:intergenic | 15.0% |
| !! | TTAGTTATATAAATTTGGTA+GGG | - | chr5.3:32938186-32938205 | MS.gene054720:intron | 15.0% |
| !! | TTTAGTTATATAAATTTGGT+AGG | - | chr5.3:32938185-32938204 | MS.gene054720:intron | 15.0% |
| !!! | AAATTGATTTTGAAATATTG+GGG | - | chr5.3:32937044-32937063 | MS.gene054720:intron | 15.0% |
| !!! | ATTATAATTGCTTTTACATT+TGG | - | chr5.3:32936857-32936876 | MS.gene054720:intron | 15.0% |
| !!! | TAATTTTCTATTGATTATGT+CGG | + | chr5.3:32937335-32937354 | None:intergenic | 15.0% |
| !!! | TTTTCTTTCTTTCTTTTAAA+AGG | + | chr5.3:32937769-32937788 | None:intergenic | 15.0% |
| !! | TCATCATTGACAAATTATTT+GGG | - | chr5.3:32938793-32938812 | MS.gene054720:CDS | 20.0% |
| !!! | TATGTTGTTTATGTTTATTG+TGG | - | chr5.3:32939239-32939258 | MS.gene054720:CDS | 20.0% |
| !!! | TTCTTTCTTTTAAAAGGAAA+AGG | + | chr5.3:32937763-32937782 | None:intergenic | 20.0% |
| ! | AAACTAATTTACGCAGATAA+TGG | + | chr5.3:32938951-32938970 | None:intergenic | 25.0% |
| ! | AATACAGTAGAATTCAATAC+TGG | + | chr5.3:32937438-32937457 | None:intergenic | 25.0% |
| ! | AGATACTGAAAAATAGAAGA+AGG | + | chr5.3:32938707-32938726 | None:intergenic | 25.0% |
| ! | AGTTATGAGTTATGATTCAT+TGG | + | chr5.3:32937996-32938015 | None:intergenic | 25.0% |
| ! | ATCAGTGTTAATATCATTTC+AGG | + | chr5.3:32937005-32937024 | None:intergenic | 25.0% |
| ! | CACTGTTTAGAAACAAAAAT+AGG | - | chr5.3:32937803-32937822 | MS.gene054720:intron | 25.0% |
| ! | GAAAATTGTGATTACAAAGT+TGG | + | chr5.3:32939014-32939033 | None:intergenic | 25.0% |
| ! | GTCATCATTGACAAATTATT+TGG | - | chr5.3:32938792-32938811 | MS.gene054720:CDS | 25.0% |
| ! | GTCATCCAAAAAGTAATTTA+AGG | + | chr5.3:32937489-32937508 | None:intergenic | 25.0% |
| ! | TCTAAACAGTGTGTAAATAA+GGG | + | chr5.3:32937794-32937813 | None:intergenic | 25.0% |
| ! | TTCTAAACAGTGTGTAAATA+AGG | + | chr5.3:32937795-32937814 | None:intergenic | 25.0% |
| !! | AATTTTGTTCAATTTGTCAC+AGG | - | chr5.3:32937458-32937477 | MS.gene054720:intron | 25.0% |
| !! | ATAATTTGTCAATGATGACT+TGG | + | chr5.3:32938791-32938810 | None:intergenic | 25.0% |
| !! | TAATTTGTCAATGATGACTT+GGG | + | chr5.3:32938790-32938809 | None:intergenic | 25.0% |
| !!! | AATAGTTCCCTCTATTTTTA+AGG | + | chr5.3:32937949-32937968 | None:intergenic | 25.0% |
| !!! | CACAACCTTAAATTACTTTT+TGG | - | chr5.3:32937481-32937500 | MS.gene054720:intron | 25.0% |
| !!! | TCAGTATCTTGTTTTGTTAT+CGG | - | chr5.3:32938718-32938737 | MS.gene054720:CDS | 25.0% |
| !!! | TTGTTTTGTTTGGAGAATAT+AGG | - | chr5.3:32939181-32939200 | MS.gene054720:CDS | 25.0% |
| AAATCAAAGGATCTTGAAAG+TGG | - | chr5.3:32938353-32938372 | MS.gene054720:CDS | 30.0% | |
| ACTATGGTTAATCCAATCAA+AGG | + | chr5.3:32938574-32938593 | None:intergenic | 30.0% | |
| AGCAGTACCTTAAAAATAGA+GGG | - | chr5.3:32937939-32937958 | MS.gene054720:intron | 30.0% | |
| AGGAAGAACATATATCTTAC+TGG | - | chr5.3:32939212-32939231 | MS.gene054720:CDS | 30.0% | |
| AGTGGCACAGTTTAAAAAAA+GGG | - | chr5.3:32938656-32938675 | MS.gene054720:intron | 30.0% | |
| AGTTAGTATACAGTGTTCAA+AGG | + | chr5.3:32937728-32937747 | None:intergenic | 30.0% | |
| CAATACTGGATTATGTTGAA+GGG | + | chr5.3:32937424-32937443 | None:intergenic | 30.0% | |
| GAAATATTGGGGAAATTTGA+AGG | - | chr5.3:32937055-32937074 | MS.gene054720:intron | 30.0% | |
| GAAGAACATATATCTTACTG+GGG | - | chr5.3:32939214-32939233 | MS.gene054720:CDS | 30.0% | |
| GATTGTTACTGCTAATAAAG+AGG | - | chr5.3:32938019-32938038 | MS.gene054720:intron | 30.0% | |
| GGAAGAACATATATCTTACT+GGG | - | chr5.3:32939213-32939232 | MS.gene054720:CDS | 30.0% | |
| TACTGAAAAATAGAAGAAGG+CGG | + | chr5.3:32938704-32938723 | None:intergenic | 30.0% | |
| TATAATAGCAGCCAAGAAAT+TGG | + | chr5.3:32936843-32936862 | None:intergenic | 30.0% | |
| TCAATACTGGATTATGTTGA+AGG | + | chr5.3:32937425-32937444 | None:intergenic | 30.0% | |
| TCATTGAAAGAAGGAAACAT+AGG | - | chr5.3:32938248-32938267 | MS.gene054720:intron | 30.0% | |
| TCTGAGAATCACCTTTATAA+AGG | + | chr5.3:32937875-32937894 | None:intergenic | 30.0% | |
| TTACTCAATCACCAATTTCT+TGG | - | chr5.3:32936829-32936848 | MS.gene054720:CDS | 30.0% | |
| TTCTGCAGAAAAATTGAAAG+CGG | - | chr5.3:32938382-32938401 | MS.gene054720:CDS | 30.0% | |
| TTTATGTTTATTGTGGCTGT+TGG | - | chr5.3:32939246-32939265 | MS.gene054720:CDS | 30.0% | |
| ! | AAAAATAGGAATTGCCACTT+TGG | - | chr5.3:32937817-32937836 | MS.gene054720:intron | 30.0% |
| ! | ATTGTTACTTGCAGGATAAT+TGG | - | chr5.3:32937171-32937190 | MS.gene054720:CDS | 30.0% |
| ! | CTTCATAAATTGTTACTTGC+AGG | - | chr5.3:32937163-32937182 | MS.gene054720:CDS | 30.0% |
| ! | GATTACAAAGTTGGCTTATA+TGG | + | chr5.3:32939005-32939024 | None:intergenic | 30.0% |
| ! | GCAAGTTGAGTTAAGAAATT+TGG | + | chr5.3:32936911-32936930 | None:intergenic | 30.0% |
| ! | TTTGAATGCATTGATGAAAC+AGG | - | chr5.3:32939128-32939147 | MS.gene054720:CDS | 30.0% |
| !! | AAAATAGGAATTGCCACTTT+GGG | - | chr5.3:32937818-32937837 | MS.gene054720:intron | 30.0% |
| !! | GAAGTTGATAATCATACGAA+GGG | + | chr5.3:32937706-32937725 | None:intergenic | 30.0% |
| !! | TTTCTTGATTTTGATGAGTG+CGG | - | chr5.3:32938095-32938114 | MS.gene054720:intron | 30.0% |
| !! | TTTTGGGGAATTGTTTTGTT+TGG | - | chr5.3:32939171-32939190 | MS.gene054720:CDS | 30.0% |
| !!! | ATCAGAAACTTTGTTTTTCC+AGG | - | chr5.3:32938222-32938241 | MS.gene054720:intron | 30.0% |
| !!! | TCAGAAACTTTGTTTTTCCA+GGG | - | chr5.3:32938223-32938242 | MS.gene054720:intron | 30.0% |
| AATTATTTGGGAGACTGGAA+TGG | - | chr5.3:32938805-32938824 | MS.gene054720:intron | 35.0% | |
| ACATTTGGTCAGATAGGAAA+TGG | - | chr5.3:32936872-32936891 | MS.gene054720:intron | 35.0% | |
| AGTATGCATTTGCTCTAGTT+GGG | - | chr5.3:32937255-32937274 | MS.gene054720:CDS | 35.0% | |
| CAGTGGCACAGTTTAAAAAA+AGG | - | chr5.3:32938655-32938674 | MS.gene054720:intron | 35.0% | |
| CATTTGGTCAGATAGGAAAT+GGG | - | chr5.3:32936873-32936892 | MS.gene054720:intron | 35.0% | |
| CTTCACTTGTTTCATCGTAA+TGG | - | chr5.3:32936955-32936974 | MS.gene054720:intron | 35.0% | |
| GACGAGTTCTCATTAGATAT+CGG | + | chr5.3:32938978-32938997 | None:intergenic | 35.0% | |
| GAGCAGTACCTTAAAAATAG+AGG | - | chr5.3:32937938-32937957 | MS.gene054720:intron | 35.0% | |
| GGAGAATATAGGAAATCATC+AGG | - | chr5.3:32939192-32939211 | MS.gene054720:CDS | 35.0% | |
| GGTTCAAATCCTTCAAAACA+CGG | - | chr5.3:32936976-32936995 | MS.gene054720:intron | 35.0% | |
| GTAAGCACACAATACATACA+AGG | + | chr5.3:32937654-32937673 | None:intergenic | 35.0% | |
| TCCAACAAGGTTCAACTTAA+AGG | - | chr5.3:32938279-32938298 | MS.gene054720:intron | 35.0% | |
| TCTGCAGAAAAATTGAAAGC+GGG | - | chr5.3:32938383-32938402 | MS.gene054720:CDS | 35.0% | |
| TGACAAATTATTTGGGAGAC+TGG | - | chr5.3:32938800-32938819 | MS.gene054720:intron | 35.0% | |
| TGAGAACAGAAGAGCTATTA+AGG | - | chr5.3:32938430-32938449 | MS.gene054720:CDS | 35.0% | |
| TTTGGGAAAAGACCTTTGAT+TGG | - | chr5.3:32938559-32938578 | MS.gene054720:intron | 35.0% | |
| ! | AATTGGTGATTGAGTAATCG+AGG | + | chr5.3:32936826-32936845 | None:intergenic | 35.0% |
| ! | CTTGAGCTTAGCTTGATTAT+CGG | + | chr5.3:32937603-32937622 | None:intergenic | 35.0% |
| ! | GCTTTTACATTTGGTCAGAT+AGG | - | chr5.3:32936866-32936885 | MS.gene054720:intron | 35.0% |
| ! | TTAACCATAGTTTTCTTCGC+TGG | - | chr5.3:32938583-32938602 | MS.gene054720:intron | 35.0% |
| ! | TTTCTTAACTCAACTTGCTC+AGG | - | chr5.3:32936913-32936932 | MS.gene054720:intron | 35.0% |
| ! | TTTGTTGCTAAGTTGAATGC+TGG | + | chr5.3:32938631-32938650 | None:intergenic | 35.0% |
| !! | CTGTATTGACTCTGTTAGAA+AGG | - | chr5.3:32936774-32936793 | MS.gene054720:CDS | 35.0% |
| !! | GGAAGTTGATAATCATACGA+AGG | + | chr5.3:32937707-32937726 | None:intergenic | 35.0% |
| !! | TATGCTTGCTGTAATCACTT+CGG | + | chr5.3:32937291-32937310 | None:intergenic | 35.0% |
| !! | TCCTTTAAGTTGAACCTTGT+TGG | + | chr5.3:32938283-32938302 | None:intergenic | 35.0% |
| !! | TTTAAGTTGAACCTTGTTGG+AGG | + | chr5.3:32938280-32938299 | None:intergenic | 35.0% |
| !!! | AGTTGGTTGTTTTTTGGTTG+CGG | - | chr5.3:32937541-32937560 | MS.gene054720:intron | 35.0% |
| !!! | CTTTTTTTAAACTGTGCCAC+TGG | + | chr5.3:32938657-32938676 | None:intergenic | 35.0% |
| !!! | TGTTGGCTCTTTTCTTCTTA+GGG | - | chr5.3:32936741-32936760 | MS.gene054720:CDS | 35.0% |
| ACCAAAAAACAACCAACTCC+AGG | + | chr5.3:32937539-32937558 | None:intergenic | 40.0% | |
| ACTTAGCAACAAATGACCAG+TGG | - | chr5.3:32938638-32938657 | MS.gene054720:intron | 40.0% | |
| ACTTGGGTAAGTTCAAGACA+GGG | + | chr5.3:32938774-32938793 | None:intergenic | 40.0% | |
| AGCTATGATTGTTCCCAAAG+TGG | + | chr5.3:32937834-32937853 | None:intergenic | 40.0% | |
| ATAGGTAAGAACCTCCAACA+AGG | - | chr5.3:32938266-32938285 | MS.gene054720:intron | 40.0% | |
| ATTTGCTCTAGTTGGGCTTT+CGG | - | chr5.3:32937262-32937281 | MS.gene054720:CDS | 40.0% | |
| CAGTATGCATTTGCTCTAGT+TGG | - | chr5.3:32937254-32937273 | MS.gene054720:CDS | 40.0% | |
| CCAAAAAACAACCAACTCCA+GGG | + | chr5.3:32937538-32937557 | None:intergenic | 40.0% | |
| CGATAATCAAGCTAAGCTCA+AGG | - | chr5.3:32937601-32937620 | MS.gene054720:CDS | 40.0% | |
| CGGTGAGATACCTATAACAA+CGG | + | chr5.3:32937315-32937334 | None:intergenic | 40.0% | |
| CTGGTTTCCTTTGTGGATTT+GGG | - | chr5.3:32938848-32938867 | MS.gene054720:intron | 40.0% | |
| GATTCATTGGACGAGAGAAA+AGG | + | chr5.3:32937983-32938002 | None:intergenic | 40.0% | |
| GATTCCAGCGAAGAAAACTA+TGG | + | chr5.3:32938590-32938609 | None:intergenic | 40.0% | |
| GCAAGCATAACCGTTGTTAT+AGG | - | chr5.3:32937302-32937321 | MS.gene054720:CDS | 40.0% | |
| GCCATTGCAAACATTACTGA+GGG | + | chr5.3:32937197-32937216 | None:intergenic | 40.0% | |
| GCTCAAAAAAGTGATTGAGC+TGG | + | chr5.3:32937922-32937941 | None:intergenic | 40.0% | |
| GGAATCTTGTTAAACTCACC+TGG | + | chr5.3:32938930-32938949 | None:intergenic | 40.0% | |
| TACTCTTAAAGTTTCGCTGC+AGG | - | chr5.3:32938534-32938553 | MS.gene054720:intron | 40.0% | |
| TAGAGCAAATGCATACTGTG+TGG | + | chr5.3:32937252-32937271 | None:intergenic | 40.0% | |
| TCAGTAATGTTTGCAATGGC+AGG | - | chr5.3:32937197-32937216 | MS.gene054720:CDS | 40.0% | |
| TCTAACAGAGTCAATACAGC+AGG | + | chr5.3:32936773-32936792 | None:intergenic | 40.0% | |
| TGATAATCATACGAAGGGAC+CGG | + | chr5.3:32937701-32937720 | None:intergenic | 40.0% | |
| TGCCATTGCAAACATTACTG+AGG | + | chr5.3:32937198-32937217 | None:intergenic | 40.0% | |
| TTCCTTTGTGGATTTGGGAA+TGG | - | chr5.3:32938853-32938872 | MS.gene054720:intron | 40.0% | |
| ! | AAAGCTGAGATTCTTTTCCC+TGG | - | chr5.3:32937518-32937537 | MS.gene054720:intron | 40.0% |
| ! | AAAGTTTCGCTGCAGGTTTT+TGG | - | chr5.3:32938541-32938560 | MS.gene054720:intron | 40.0% |
| ! | AAGTTTCGCTGCAGGTTTTT+GGG | - | chr5.3:32938542-32938561 | MS.gene054720:intron | 40.0% |
| ! | ATGTATTTGGTGGAGAGCAA+GGG | - | chr5.3:32936698-32936717 | MS.gene054720:CDS | 40.0% |
| ! | CTCTTTTCTTCTTAGGGACA+TGG | - | chr5.3:32936747-32936766 | MS.gene054720:CDS | 40.0% |
| ! | GTTCTGAATTTCAGTTGCTG+TGG | - | chr5.3:32938063-32938082 | MS.gene054720:intron | 40.0% |
| ! | TAACTCAACTTGCTCAGGTT+CGG | - | chr5.3:32936918-32936937 | MS.gene054720:intron | 40.0% |
| ! | TTCCACTTGTGAGCACTTTT+TGG | - | chr5.3:32939154-32939173 | MS.gene054720:CDS | 40.0% |
| !! | TCCACTTGTGAGCACTTTTT+GGG | - | chr5.3:32939155-32939174 | MS.gene054720:CDS | 40.0% |
| !!! | CTGTTGGCTCTTTTCTTCTT+AGG | - | chr5.3:32936740-32936759 | MS.gene054720:CDS | 40.0% |
| !!! | TTTTTGGTTGCGGTTTGTCT+AGG | - | chr5.3:32937551-32937570 | MS.gene054720:intron | 40.0% |
| AATGGCCTTCAGTTTATGGG+AGG | - | chr5.3:32938871-32938890 | MS.gene054720:intron | 45.0% | |
| AGGCGGTGTAAACATTCAGA+TGG | + | chr5.3:32938687-32938706 | None:intergenic | 45.0% | |
| AGTTCAAGACAGGGTGGTAA+AGG | + | chr5.3:32938765-32938784 | None:intergenic | 45.0% | |
| CTTGACCTCCCATAAACTGA+AGG | + | chr5.3:32938879-32938898 | None:intergenic | 45.0% | |
| GACTTGGGTAAGTTCAAGAC+AGG | + | chr5.3:32938775-32938794 | None:intergenic | 45.0% | |
| GCCCTCAGTAATGTTTGCAA+TGG | - | chr5.3:32937193-32937212 | MS.gene054720:CDS | 45.0% | |
| GCGGTGTAAACATTCAGATG+GGG | + | chr5.3:32938685-32938704 | None:intergenic | 45.0% | |
| GGCGGTGTAAACATTCAGAT+GGG | + | chr5.3:32938686-32938705 | None:intergenic | 45.0% | |
| GGGAATGGCCTTCAGTTTAT+GGG | - | chr5.3:32938868-32938887 | MS.gene054720:intron | 45.0% | |
| GGTGATTGAGTAATCGAGGT+AGG | + | chr5.3:32936822-32936841 | None:intergenic | 45.0% | |
| GTAATGTTTGCAATGGCAGG+TGG | - | chr5.3:32937200-32937219 | MS.gene054720:CDS | 45.0% | |
| GTCTATTTAACTCCCCTTGC+CGG | - | chr5.3:32937679-32937698 | MS.gene054720:intron | 45.0% | |
| TAATCGAGGTAGGTATGCTG+AGG | + | chr5.3:32936812-32936831 | None:intergenic | 45.0% | |
| TCCAGGGACTCATTGAAAGA+AGG | - | chr5.3:32938239-32938258 | MS.gene054720:intron | 45.0% | |
| TCCTTCTTTCAATGAGTCCC+TGG | + | chr5.3:32938243-32938262 | None:intergenic | 45.0% | |
| TGGACGAGAGAAAAGGAGTT+TGG | + | chr5.3:32937976-32937995 | None:intergenic | 45.0% | |
| TGGGAATGGCCTTCAGTTTA+TGG | - | chr5.3:32938867-32938886 | MS.gene054720:intron | 45.0% | |
| TTGACTCTGTTAGAAAGGCG+AGG | - | chr5.3:32936779-32936798 | MS.gene054720:CDS | 45.0% | |
| ! | GAGATTCTTTTCCCTGGAGT+TGG | - | chr5.3:32937524-32937543 | MS.gene054720:intron | 45.0% |
| ! | GCTGGTTTCCTTTGTGGATT+TGG | - | chr5.3:32938847-32938866 | MS.gene054720:intron | 45.0% |
| !! | CCACTTGTGAGCACTTTTTG+GGG | - | chr5.3:32939156-32939175 | MS.gene054720:CDS | 45.0% |
| !! | TTCAGGTGTCCGTGTTTTGA+AGG | + | chr5.3:32936988-32937007 | None:intergenic | 45.0% |
| !!! | CCCTGGAGTTGGTTGTTTTT+TGG | - | chr5.3:32937535-32937554 | MS.gene054720:intron | 45.0% |
| ACAAAGGAAACCAGCCAGCA+AGG | + | chr5.3:32938842-32938861 | None:intergenic | 50.0% | |
| ACTGTGTGGACAGATTCCCA+AGG | + | chr5.3:32937238-32937257 | None:intergenic | 50.0% | |
| AGACTGGAATGGAAGAGGCT+GGG | - | chr5.3:32938816-32938835 | MS.gene054720:intron | 50.0% | |
| GGCCATTCCCAAATCCACAA+AGG | + | chr5.3:32938858-32938877 | None:intergenic | 50.0% | |
| GGTAGGTATGCTGAGGAAGA+CGG | + | chr5.3:32936805-32936824 | None:intergenic | 50.0% | |
| GTGTGCTCATGGCATCATCA+GGG | - | chr5.3:32939268-32939287 | MS.gene054720:CDS | 50.0% | |
| TGGACAGATTCCCAAGGCTA+AGG | + | chr5.3:32937232-32937251 | None:intergenic | 50.0% | |
| TGGGTAAGTTCAAGACAGGG+TGG | + | chr5.3:32938771-32938790 | None:intergenic | 50.0% | |
| TTGGGAGACTGGAATGGAAG+AGG | - | chr5.3:32938811-32938830 | MS.gene054720:intron | 50.0% | |
| TTTATGGGAGGTCAAGCTGC+TGG | - | chr5.3:32938883-32938902 | MS.gene054720:intron | 50.0% | |
| ! | TATTTGGTGGAGAGCAAGGG+AGG | - | chr5.3:32936701-32936720 | MS.gene054720:CDS | 50.0% |
| !! | CCCCAAAAAGTGCTCACAAG+TGG | + | chr5.3:32939159-32939178 | None:intergenic | 50.0% |
| !! | TTGCTGGCTGGTTTCCTTTG+TGG | - | chr5.3:32938841-32938860 | MS.gene054720:intron | 50.0% |
| AGCCAACAGCATGCACCCTA+TGG | + | chr5.3:32936729-32936748 | None:intergenic | 55.0% | |
| ATCATACGAAGGGACCGGCA+AGG | + | chr5.3:32937696-32937715 | None:intergenic | 55.0% | |
| GAGACTGGAATGGAAGAGGC+TGG | - | chr5.3:32938815-32938834 | MS.gene054720:intron | 55.0% | |
| GGTGTGCTCATGGCATCATC+AGG | - | chr5.3:32939267-32939286 | MS.gene054720:CDS | 55.0% | |
| GTTTGCAATGGCAGGTGGTG+TGG | - | chr5.3:32937205-32937224 | MS.gene054720:CDS | 55.0% | |
| TCATACGAAGGGACCGGCAA+GGG | + | chr5.3:32937695-32937714 | None:intergenic | 55.0% | |
| TCATGGCATCATCAGGGCAC+AGG | - | chr5.3:32939274-32939293 | MS.gene054720:CDS | 55.0% | |
| TGCCATAGGGTGCATGCTGT+TGG | - | chr5.3:32936724-32936743 | MS.gene054720:CDS | 55.0% | |
| TGTGGCTGTTGGTGTGCTCA+TGG | - | chr5.3:32939257-32939276 | MS.gene054720:CDS | 55.0% | |
| ! | GTGGTGTGGTCCTTAGCCTT+GGG | - | chr5.3:32937219-32937238 | MS.gene054720:CDS | 55.0% |
| !! | AGAGCAAGGGAGGTGCCATA+GGG | - | chr5.3:32936711-32936730 | MS.gene054720:CDS | 55.0% |
| CATACGAAGGGACCGGCAAG+GGG | + | chr5.3:32937694-32937713 | None:intergenic | 60.0% | |
| GGTGGTGTGGTCCTTAGCCT+TGG | - | chr5.3:32937218-32937237 | MS.gene054720:CDS | 60.0% | |
| TGCAGCAGCTGATGCTGTCC+AGG | - | chr5.3:32938909-32938928 | MS.gene054720:intron | 60.0% | |
| !! | GAGAGCAAGGGAGGTGCCAT+AGG | - | chr5.3:32936710-32936729 | MS.gene054720:CDS | 60.0% |
| TGGAAGAGGCTGGGCCTTGC+TGG | - | chr5.3:32938825-32938844 | MS.gene054720:intron | 65.0% | |
| AGAGGCTGGGCCTTGCTGGC+TGG | - | chr5.3:32938829-32938848 | MS.gene054720:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 32936698 | 32939305 | 32936698 | ID=MS.gene054720 |
| chr5.3 | mRNA | 32936698 | 32939305 | 32936698 | ID=MS.gene054720.t1;Parent=MS.gene054720 |
| chr5.3 | exon | 32939069 | 32939305 | 32939069 | ID=MS.gene054720.t1.exon1;Parent=MS.gene054720.t1 |
| chr5.3 | CDS | 32939069 | 32939305 | 32939069 | ID=cds.MS.gene054720.t1;Parent=MS.gene054720.t1 |
| chr5.3 | exon | 32938680 | 32938818 | 32938680 | ID=MS.gene054720.t1.exon2;Parent=MS.gene054720.t1 |
| chr5.3 | CDS | 32938680 | 32938818 | 32938680 | ID=cds.MS.gene054720.t1;Parent=MS.gene054720.t1 |
| chr5.3 | exon | 32938349 | 32938523 | 32938349 | ID=MS.gene054720.t1.exon3;Parent=MS.gene054720.t1 |
| chr5.3 | CDS | 32938349 | 32938523 | 32938349 | ID=cds.MS.gene054720.t1;Parent=MS.gene054720.t1 |
| chr5.3 | exon | 32937734 | 32937759 | 32937734 | ID=MS.gene054720.t1.exon4;Parent=MS.gene054720.t1 |
| chr5.3 | CDS | 32937734 | 32937759 | 32937734 | ID=cds.MS.gene054720.t1;Parent=MS.gene054720.t1 |
| chr5.3 | exon | 32937552 | 32937652 | 32937552 | ID=MS.gene054720.t1.exon5;Parent=MS.gene054720.t1 |
| chr5.3 | CDS | 32937552 | 32937652 | 32937552 | ID=cds.MS.gene054720.t1;Parent=MS.gene054720.t1 |
| chr5.3 | exon | 32937073 | 32937447 | 32937073 | ID=MS.gene054720.t1.exon6;Parent=MS.gene054720.t1 |
| chr5.3 | CDS | 32937073 | 32937447 | 32937073 | ID=cds.MS.gene054720.t1;Parent=MS.gene054720.t1 |
| chr5.3 | exon | 32936698 | 32936853 | 32936698 | ID=MS.gene054720.t1.exon7;Parent=MS.gene054720.t1 |
| chr5.3 | CDS | 32936698 | 32936853 | 32936698 | ID=cds.MS.gene054720.t1;Parent=MS.gene054720.t1 |
| Gene Sequence |
| Protein sequence |
