Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41252.t1 | XP_013450334.1 | 96.6 | 326 | 11 | 0 | 1 | 326 | 1 | 326 | 2.80E-181 | 644.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41252.t1 | Q9FVQ0 | 47.3 | 319 | 168 | 0 | 8 | 326 | 5 | 323 | 1.8e-88 | 327.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41252.t1 | A0A072U3V7 | 96.6 | 326 | 11 | 0 | 1 | 326 | 1 | 326 | 2.0e-181 | 644.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051710 | MS.gene41252 | 0.818554 | 1.84E-52 | -1.69E-46 |
| MS.gene058515 | MS.gene41252 | 0.819586 | 1.07E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41252.t1 | MTR_7g107690 | 96.626 | 326 | 11 | 0 | 1 | 326 | 1 | 326 | 0.0 | 651 |
| MS.gene41252.t1 | MTR_7g107710 | 67.500 | 320 | 103 | 1 | 8 | 326 | 6 | 325 | 4.25e-162 | 457 |
| MS.gene41252.t1 | MTR_8g432640 | 48.589 | 319 | 164 | 0 | 8 | 326 | 6 | 324 | 8.91e-115 | 337 |
| MS.gene41252.t1 | MTR_3g088925 | 50.157 | 319 | 159 | 0 | 8 | 326 | 7 | 325 | 9.20e-114 | 335 |
| MS.gene41252.t1 | MTR_3g088945 | 49.843 | 319 | 160 | 0 | 8 | 326 | 7 | 325 | 1.43e-112 | 332 |
| MS.gene41252.t1 | MTR_5g033260 | 48.903 | 319 | 163 | 0 | 8 | 326 | 6 | 324 | 1.75e-112 | 331 |
| MS.gene41252.t1 | MTR_3g088955 | 49.216 | 319 | 162 | 0 | 8 | 326 | 7 | 325 | 7.33e-111 | 328 |
| MS.gene41252.t1 | MTR_4g051642 | 48.903 | 319 | 163 | 0 | 8 | 326 | 7 | 325 | 2.23e-109 | 324 |
| MS.gene41252.t1 | MTR_1g069275 | 45.988 | 324 | 166 | 4 | 9 | 326 | 26 | 346 | 4.16e-102 | 306 |
| MS.gene41252.t1 | MTR_3g109520 | 46.130 | 323 | 168 | 2 | 9 | 326 | 40 | 361 | 1.81e-101 | 305 |
| MS.gene41252.t1 | MTR_6g086870 | 45.399 | 326 | 169 | 4 | 9 | 326 | 21 | 345 | 7.08e-100 | 300 |
| MS.gene41252.t1 | MTR_1g008380 | 46.440 | 323 | 166 | 3 | 9 | 326 | 43 | 363 | 1.46e-99 | 300 |
| MS.gene41252.t1 | MTR_7g099330 | 43.653 | 323 | 171 | 3 | 9 | 326 | 25 | 341 | 7.18e-99 | 298 |
| MS.gene41252.t1 | MTR_1g046230 | 44.923 | 325 | 171 | 3 | 9 | 326 | 25 | 348 | 1.46e-98 | 297 |
| MS.gene41252.t1 | MTR_1g011630 | 43.034 | 323 | 174 | 3 | 9 | 326 | 17 | 334 | 4.68e-95 | 288 |
| MS.gene41252.t1 | MTR_7g099160 | 40.000 | 255 | 142 | 3 | 77 | 326 | 214 | 462 | 1.10e-61 | 205 |
| MS.gene41252.t1 | MTR_3g096030 | 40.331 | 181 | 84 | 1 | 4 | 184 | 2 | 158 | 1.81e-45 | 152 |
| MS.gene41252.t1 | MTR_1g041605 | 85.000 | 40 | 6 | 0 | 112 | 151 | 29 | 68 | 2.85e-17 | 75.5 |
| MS.gene41252.t1 | MTR_8g037910 | 25.532 | 235 | 141 | 5 | 7 | 214 | 3 | 230 | 2.21e-15 | 75.5 |
| MS.gene41252.t1 | MTR_8g037910 | 25.532 | 235 | 141 | 5 | 7 | 214 | 3 | 230 | 2.79e-15 | 75.9 |
| MS.gene41252.t1 | MTR_8g037910 | 25.532 | 235 | 141 | 5 | 7 | 214 | 3 | 230 | 6.44e-15 | 75.5 |
| MS.gene41252.t1 | MTR_8g037880 | 24.268 | 239 | 148 | 6 | 7 | 217 | 3 | 236 | 1.35e-14 | 74.3 |
| MS.gene41252.t1 | MTR_3g437580 | 25.101 | 247 | 138 | 6 | 4 | 214 | 9 | 244 | 6.62e-14 | 72.0 |
| MS.gene41252.t1 | MTR_3g437580 | 25.101 | 247 | 138 | 6 | 4 | 214 | 9 | 244 | 1.22e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41252.t1 | AT1G48910 | 47.335 | 319 | 168 | 0 | 8 | 326 | 5 | 323 | 1.92e-115 | 339 |
| MS.gene41252.t1 | AT1G21430 | 44.817 | 328 | 176 | 4 | 1 | 326 | 1 | 325 | 1.18e-101 | 304 |
| MS.gene41252.t1 | AT1G04610 | 46.012 | 326 | 167 | 4 | 9 | 326 | 38 | 362 | 3.61e-101 | 304 |
| MS.gene41252.t1 | AT4G28720 | 44.308 | 325 | 173 | 4 | 9 | 326 | 26 | 349 | 7.17e-101 | 303 |
| MS.gene41252.t1 | AT5G25620 | 46.462 | 325 | 164 | 4 | 9 | 326 | 33 | 354 | 3.16e-100 | 301 |
| MS.gene41252.t1 | AT5G25620 | 46.462 | 325 | 164 | 4 | 9 | 326 | 33 | 354 | 7.09e-100 | 301 |
| MS.gene41252.t1 | AT4G13260 | 44.272 | 323 | 174 | 2 | 9 | 326 | 29 | 350 | 7.81e-100 | 300 |
| MS.gene41252.t1 | AT1G04180 | 44.753 | 324 | 170 | 4 | 9 | 326 | 26 | 346 | 2.90e-97 | 294 |
| MS.gene41252.t1 | AT5G11320 | 44.582 | 323 | 167 | 3 | 9 | 326 | 18 | 333 | 1.15e-96 | 290 |
| MS.gene41252.t1 | AT5G43890 | 43.385 | 325 | 176 | 4 | 9 | 326 | 26 | 349 | 2.99e-96 | 291 |
| MS.gene41252.t1 | AT5G11320 | 44.582 | 323 | 167 | 3 | 9 | 326 | 18 | 333 | 9.64e-96 | 290 |
| MS.gene41252.t1 | AT4G32540 | 42.901 | 324 | 173 | 4 | 9 | 326 | 22 | 339 | 4.20e-94 | 286 |
| MS.gene41252.t1 | AT4G32540 | 43.385 | 325 | 172 | 4 | 9 | 326 | 22 | 341 | 6.51e-94 | 285 |
| MS.gene41252.t1 | AT4G13260 | 46.099 | 282 | 147 | 1 | 9 | 285 | 29 | 310 | 2.45e-93 | 280 |
| MS.gene41252.t1 | AT2G33230 | 43.865 | 326 | 174 | 4 | 9 | 326 | 33 | 357 | 8.67e-93 | 283 |
| MS.gene41252.t1 | AT4G13260 | 39.592 | 245 | 141 | 3 | 87 | 326 | 5 | 247 | 4.68e-59 | 192 |
| MS.gene41252.t1 | AT1G65860 | 27.119 | 236 | 136 | 4 | 5 | 213 | 10 | 236 | 5.46e-16 | 79.0 |
| MS.gene41252.t1 | AT1G62560 | 27.197 | 239 | 133 | 7 | 5 | 213 | 10 | 237 | 6.64e-16 | 78.2 |
| MS.gene41252.t1 | AT1G62560 | 27.542 | 236 | 130 | 7 | 8 | 213 | 13 | 237 | 7.20e-16 | 78.6 |
| MS.gene41252.t1 | AT1G12140 | 30.233 | 172 | 103 | 4 | 49 | 212 | 74 | 236 | 1.23e-13 | 71.6 |
| MS.gene41252.t1 | AT1G12140 | 30.233 | 172 | 103 | 4 | 49 | 212 | 74 | 236 | 1.23e-13 | 71.6 |
| MS.gene41252.t1 | AT5G07800 | 27.413 | 259 | 139 | 8 | 5 | 226 | 13 | 259 | 3.69e-13 | 70.5 |
| MS.gene41252.t1 | AT1G12160 | 24.198 | 343 | 155 | 11 | 8 | 317 | 12 | 282 | 5.71e-13 | 69.7 |
| MS.gene41252.t1 | AT5G61290 | 26.971 | 241 | 136 | 6 | 1 | 205 | 9 | 245 | 3.83e-12 | 67.4 |
| MS.gene41252.t1 | AT1G62540 | 27.848 | 237 | 133 | 5 | 5 | 213 | 10 | 236 | 8.19e-12 | 66.2 |
| MS.gene41252.t1 | AT1G62540 | 27.848 | 237 | 133 | 5 | 5 | 213 | 10 | 236 | 8.80e-12 | 66.2 |
| MS.gene41252.t1 | AT1G62540 | 27.848 | 237 | 133 | 5 | 5 | 213 | 10 | 236 | 9.69e-12 | 66.2 |
| MS.gene41252.t1 | AT1G12200 | 32.857 | 140 | 78 | 5 | 80 | 213 | 113 | 242 | 6.09e-11 | 63.2 |
| MS.gene41252.t1 | AT1G12140 | 29.480 | 173 | 103 | 5 | 49 | 213 | 74 | 235 | 6.21e-11 | 63.5 |
| MS.gene41252.t1 | AT1G12200 | 33.333 | 138 | 76 | 5 | 82 | 213 | 115 | 242 | 7.01e-11 | 63.5 |
Find 71 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAAGGGGTATGCTGAATT+TGG | 0.142332 | 1.4:+35293082 | MS.gene41252:CDS |
| CTCTTCAACCCTTCAATTTC+AGG | 0.149369 | 1.4:-35292200 | None:intergenic |
| TACGGGGATGTCACGAATTA+TGG | 0.154022 | 1.4:+35293176 | MS.gene41252:CDS |
| GTTGTTGGGTCTGGGAATTC+TGG | 0.176673 | 1.4:+35292293 | MS.gene41252:CDS |
| GTACTTGACCTTCATATAAA+AGG | 0.212639 | 1.4:-35293222 | None:intergenic |
| CATGTTCTTGTTGTTGGGTC+TGG | 0.238263 | 1.4:+35292284 | MS.gene41252:CDS |
| TCAAGGGGTATGCTGAATTT+GGG | 0.240991 | 1.4:+35293083 | MS.gene41252:CDS |
| GTTGTTGGAGCAGGCCCTTC+TGG | 0.254075 | 1.4:+35291789 | MS.gene41252:CDS |
| GATGGTGATGCTTAGTAAAA+TGG | 0.306091 | 1.4:+35293151 | MS.gene41252:CDS |
| AATTAAGTCTCGAGAGTTAA+AGG | 0.307124 | 1.4:+35293283 | MS.gene41252:CDS |
| TCTCTTTCGAGGATTATATA+AGG | 0.314818 | 1.4:-35291849 | None:intergenic |
| ATGCTTAGTAAAATGGTTTA+CGG | 0.339605 | 1.4:+35293158 | MS.gene41252:CDS |
| GAAGGTGAAGGCTAAGAATA+AGG | 0.345400 | 1.4:+35292103 | MS.gene41252:CDS |
| AATGAAAGAGTGATAGTTGT+TGG | 0.360593 | 1.4:+35291774 | MS.gene41252:CDS |
| GATGATCATGTTCTTGTTGT+TGG | 0.365508 | 1.4:+35292278 | MS.gene41252:CDS |
| GGGAAAGTGATTCATTCAAC+TGG | 0.376100 | 1.4:+35292230 | MS.gene41252:CDS |
| ATGTTCTTGTTGTTGGGTCT+GGG | 0.378865 | 1.4:+35292285 | MS.gene41252:CDS |
| TGCTTAGTAAAATGGTTTAC+GGG | 0.386664 | 1.4:+35293159 | MS.gene41252:CDS |
| ATCAACCCACAAGTGGCTTA+AGG | 0.389315 | 1.4:+35294631 | MS.gene41252:CDS |
| AAGGCTAAGAATAAGGATTC+TGG | 0.392445 | 1.4:+35292110 | MS.gene41252:CDS |
| CATTCAACTGGGTTTAAGAA+TGG | 0.393718 | 1.4:+35292242 | MS.gene41252:CDS |
| ATGATGAAGGTTCTGAGAAA+TGG | 0.397382 | 1.4:+35292081 | MS.gene41252:CDS |
| CCTTCAATTTCAGGTACAAA+AGG | 0.400011 | 1.4:-35292191 | None:intergenic |
| ACGGGGATGTCACGAATTAT+GGG | 0.428718 | 1.4:+35293177 | MS.gene41252:CDS |
| ATTCAACTGGGTTTAAGAAT+GGG | 0.438492 | 1.4:+35292243 | MS.gene41252:CDS |
| TAAGGATTCTGGTGAGGTTG+AGG | 0.446777 | 1.4:+35292121 | MS.gene41252:CDS |
| CTTAAGCATTCTATTTCAGC+TGG | 0.447488 | 1.4:-35294533 | None:intergenic |
| TCAACTGTTCTGTGATAAAG+AGG | 0.449237 | 1.4:-35292047 | None:intergenic |
| ATGATCATGTTCTTGTTGTT+GGG | 0.450522 | 1.4:+35292279 | MS.gene41252:CDS |
| AAGGTTCCAACGTCAATAAT+AGG | 0.451735 | 1.4:-35293254 | None:intergenic |
| TTCGAGGATTATATAAGGAA+TGG | 0.455797 | 1.4:-35291844 | None:intergenic |
| TTCTGGCATGGAAATTGCAT+TGG | 0.469456 | 1.4:+35292310 | MS.gene41252:CDS |
| TACTTGACCTTCATATAAAA+GGG | 0.473078 | 1.4:-35293221 | None:intergenic |
| GTAAACCTTAAGCCACTTGT+GGG | 0.488383 | 1.4:-35294636 | None:intergenic |
| GGATTATATAAGGAATGGAT+TGG | 0.489614 | 1.4:-35291839 | None:intergenic |
| TTCAATCGTTGTTCGAAGCA+AGG | 0.504367 | 1.4:+35292358 | MS.gene41252:CDS |
| TCTGATGAAGTATTTGTCAA+TGG | 0.510851 | 1.4:+35293112 | MS.gene41252:CDS |
| CAAGGGGTATGCTGAATTTG+GGG | 0.511286 | 1.4:+35293084 | MS.gene41252:CDS |
| TGGGGTTGGTAGGCCTAGTG+AGG | 0.512474 | 1.4:+35293196 | MS.gene41252:CDS |
| GCTGAAATAGAATGCTTAAG+TGG | 0.513060 | 1.4:+35294536 | MS.gene41252:CDS |
| ATATAAAAGGGACCCTCACT+AGG | 0.526447 | 1.4:-35293209 | None:intergenic |
| CTTCAATTTCAGGTACAAAA+GGG | 0.526666 | 1.4:-35292190 | None:intergenic |
| TGTAAACCTTAAGCCACTTG+TGG | 0.531681 | 1.4:-35294637 | None:intergenic |
| GGAATGTATGATGGAAAAGA+AGG | 0.532095 | 1.4:-35291969 | None:intergenic |
| GGTGAGGTTGAGGAATATGA+AGG | 0.542585 | 1.4:+35292131 | MS.gene41252:CDS |
| AGGTTGAGGAATATGAAGGA+AGG | 0.551335 | 1.4:+35292135 | MS.gene41252:CDS |
| ATGTATGATGGAAAAGAAGG+TGG | 0.552215 | 1.4:-35291966 | None:intergenic |
| GATGGAAAAGAAGGTGGGAA+TGG | 0.556044 | 1.4:-35291960 | None:intergenic |
| AGAGTGATAGTTGTTGGAGC+AGG | 0.568437 | 1.4:+35291780 | MS.gene41252:CDS |
| TCACGAATTATGGGGTTGGT+AGG | 0.576228 | 1.4:+35293186 | MS.gene41252:CDS |
| GAGAATGCAGAGTATGATGA+AGG | 0.578252 | 1.4:+35292068 | MS.gene41252:CDS |
| GTATTTGTCAATGGAGATGG+TGG | 0.579490 | 1.4:+35293121 | MS.gene41252:CDS |
| TGGGTCTGGGAATTCTGGCA+TGG | 0.586713 | 1.4:+35292298 | MS.gene41252:CDS |
| CGGGGATGTCACGAATTATG+GGG | 0.588744 | 1.4:+35293178 | MS.gene41252:CDS |
| GGGGTTGGTAGGCCTAGTGA+GGG | 0.589928 | 1.4:+35293197 | MS.gene41252:CDS |
| GTGGGTTGATCTATTGAAGC+CGG | 0.593433 | 1.4:-35294618 | None:intergenic |
| GGAAAGTGATTCATTCAACT+GGG | 0.594965 | 1.4:+35292231 | MS.gene41252:CDS |
| TGTATGATGGAAAAGAAGGT+GGG | 0.596307 | 1.4:-35291965 | None:intergenic |
| GAAGTATTTGTCAATGGAGA+TGG | 0.597497 | 1.4:+35293118 | MS.gene41252:CDS |
| GCTGCTACTGAGAGACCAGA+AGG | 0.602816 | 1.4:-35291804 | None:intergenic |
| GAAGGTGGGAATGGTTTGTG+AGG | 0.606122 | 1.4:-35291951 | None:intergenic |
| GGAGATGGTGGATTTAGTGA+TGG | 0.618594 | 1.4:+35293133 | MS.gene41252:CDS |
| TTCTGAGAAATGGAAGGTGA+AGG | 0.623363 | 1.4:+35292091 | MS.gene41252:CDS |
| GATGTCACGAATTATGGGGT+TGG | 0.629113 | 1.4:+35293182 | MS.gene41252:CDS |
| TCAATAGATCAACCCACAAG+TGG | 0.631691 | 1.4:+35294624 | MS.gene41252:CDS |
| GCATTGGATCTTATCAACCA+TGG | 0.635858 | 1.4:+35292326 | MS.gene41252:CDS |
| AAGTATCCTATTATTGACGT+TGG | 0.642218 | 1.4:+35293248 | MS.gene41252:CDS |
| GCTTAGTAAAATGGTTTACG+GGG | 0.650434 | 1.4:+35293160 | MS.gene41252:CDS |
| CTGCTACTGAGAGACCAGAA+GGG | 0.656151 | 1.4:-35291803 | None:intergenic |
| TAAGAATAAGGATTCTGGTG+AGG | 0.661843 | 1.4:+35292115 | MS.gene41252:CDS |
| TGAAGGTTCTGAGAAATGGA+AGG | 0.688803 | 1.4:+35292085 | MS.gene41252:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTATAGTATGTAT+TGG | - | chr1.4:35293764-35293783 | None:intergenic | 10.0% |
| !! | ATAAATAATATAATAAATGC+AGG | + | chr1.4:35293049-35293068 | MS.gene41252:intron | 10.0% |
| !! | TAGAATAAATATATAATTGA+CGG | + | chr1.4:35292888-35292907 | MS.gene41252:intron | 10.0% |
| !!! | AAAAAATCTGTTTTTTTTTA+AGG | + | chr1.4:35293911-35293930 | MS.gene41252:intron | 10.0% |
| !!! | TATTGGTTTTTTTTTTTTTT+TGG | - | chr1.4:35293747-35293766 | None:intergenic | 10.0% |
| !!! | TTGATTTTAATGATAATTTA+TGG | - | chr1.4:35293410-35293429 | None:intergenic | 10.0% |
| !!! | TTTTAAAATATAGTATGTAT+TGG | - | chr1.4:35293893-35293912 | None:intergenic | 10.0% |
| !!! | TTTTTTTAAATATAGTATGT+GGG | - | chr1.4:35293830-35293849 | None:intergenic | 10.0% |
| !!! | TTTTTTTTAAATATAGTATG+TGG | - | chr1.4:35293831-35293850 | None:intergenic | 10.0% |
| !! | AAAACAAAACAAAAAACATT+CGG | - | chr1.4:35292462-35292481 | None:intergenic | 15.0% |
| !! | AAAATAAAGGATTAAATTGA+TGG | + | chr1.4:35293483-35293502 | MS.gene41252:intron | 15.0% |
| !! | AAATACAATTGAATTAGTAA+TGG | - | chr1.4:35292720-35292739 | None:intergenic | 15.0% |
| !! | AACAAATTTATTTAAGTGAA+AGG | + | chr1.4:35294258-35294277 | MS.gene41252:intron | 15.0% |
| !! | AGAATAAATATATAATTGAC+GGG | + | chr1.4:35292889-35292908 | MS.gene41252:intron | 15.0% |
| !! | ATGTATTCAAGTATAATTTA+AGG | - | chr1.4:35293442-35293461 | None:intergenic | 15.0% |
| !!! | TATTGTAAAAACTTTTCTTT+AGG | - | chr1.4:35291993-35292012 | None:intergenic | 15.0% |
| !!! | TATTTGACTTTAATAGTTTA+AGG | + | chr1.4:35293530-35293549 | MS.gene41252:intron | 15.0% |
| !!! | TTTATTCTAAAAAAAGATTG+TGG | - | chr1.4:35292877-35292896 | None:intergenic | 15.0% |
| !!! | TTTTTTAAATATAGTATGTG+GGG | - | chr1.4:35293829-35293848 | None:intergenic | 15.0% |
| !! | AAAGAAACATATCAAACTAT+AGG | + | chr1.4:35292637-35292656 | MS.gene41252:intron | 20.0% |
| !! | ACCTAAAATAACATTTAGAT+GGG | + | chr1.4:35294220-35294239 | MS.gene41252:intron | 20.0% |
| !! | AGAATGACATATATTTCAAT+AGG | - | chr1.4:35293982-35294001 | None:intergenic | 20.0% |
| !! | ATTGAAATATATGTCATTCT+AGG | + | chr1.4:35293982-35294001 | MS.gene41252:intron | 20.0% |
| !! | TACCTAAAATAACATTTAGA+TGG | + | chr1.4:35294219-35294238 | MS.gene41252:intron | 20.0% |
| !! | TATACTTGAATACATCAATT+TGG | + | chr1.4:35293447-35293466 | MS.gene41252:intron | 20.0% |
| !! | TCCATAAACAAGTAAAATAA+AGG | + | chr1.4:35293470-35293489 | MS.gene41252:intron | 20.0% |
| !! | TGAAAAGTGAAATATAATTG+TGG | + | chr1.4:35294456-35294475 | MS.gene41252:intron | 20.0% |
| !! | TGATTATACTCAAATATTTC+TGG | + | chr1.4:35292739-35292758 | MS.gene41252:intron | 20.0% |
| !!! | AGATTTTATATAGAATTGGA+CGG | + | chr1.4:35292809-35292828 | MS.gene41252:intron | 20.0% |
| !!! | GGTAAGATTTTATATAGAAT+TGG | + | chr1.4:35292805-35292824 | MS.gene41252:intron | 20.0% |
| !!! | TCCTTTATTTTACTTGTTTA+TGG | - | chr1.4:35293474-35293493 | None:intergenic | 20.0% |
| !!! | TTCAGAAGATTTTTTTTTGA+GGG | - | chr1.4:35293681-35293700 | None:intergenic | 20.0% |
| !!! | TTTCAGAAGATTTTTTTTTG+AGG | - | chr1.4:35293682-35293701 | None:intergenic | 20.0% |
| !!! | TTTTTAAATATAGTATGTGG+GGG | - | chr1.4:35293828-35293847 | None:intergenic | 20.0% |
| ! | AGGTTATCTAACTATAAACA+AGG | + | chr1.4:35294278-35294297 | MS.gene41252:intron | 25.0% |
| ! | ATGCTTAGTAAAATGGTTTA+CGG | + | chr1.4:35293158-35293177 | MS.gene41252:CDS | 25.0% |
| ! | CCTAAAATAACATTTAGATG+GGG | + | chr1.4:35294221-35294240 | MS.gene41252:intron | 25.0% |
| ! | GATTACAAATACAGATTTGT+AGG | - | chr1.4:35292558-35292577 | None:intergenic | 25.0% |
| ! | TACTTGACCTTCATATAAAA+GGG | - | chr1.4:35293224-35293243 | None:intergenic | 25.0% |
| ! | TTGGTTACAATAGTATGTAT+TGG | - | chr1.4:35293728-35293747 | None:intergenic | 25.0% |
| ! | TTTGATGTGTGTATCTTAAA+AGG | - | chr1.4:35292485-35292504 | None:intergenic | 25.0% |
| !! | AAATATATGTCATTCTAGGA+AGG | + | chr1.4:35293986-35294005 | MS.gene41252:intron | 25.0% |
| !! | AACCATATTAGGCAAATTTT+AGG | - | chr1.4:35293371-35293390 | None:intergenic | 25.0% |
| !! | TCAACAAAAAGGTTTTTACT+CGG | - | chr1.4:35292670-35292689 | None:intergenic | 25.0% |
| !! | TTTTATATGAAGGTCAAGTA+CGG | + | chr1.4:35293224-35293243 | MS.gene41252:CDS | 25.0% |
| !!! | AAAATTGTTTTGCATCACTA+TGG | + | chr1.4:35291871-35291890 | MS.gene41252:CDS | 25.0% |
| !!! | AACATGTCGAATGATTTTTT+TGG | + | chr1.4:35292613-35292632 | MS.gene41252:intron | 25.0% |
| !!! | ATTGACTTTGAAACCATATT+AGG | - | chr1.4:35293382-35293401 | None:intergenic | 25.0% |
| !!! | ATTGTGTTATGTGTTTTGTT+AGG | + | chr1.4:35294505-35294524 | MS.gene41252:intron | 25.0% |
| !!! | TTTTCTTTAGGAATGTATGA+TGG | - | chr1.4:35291981-35292000 | None:intergenic | 25.0% |
| AAGAATGTCCTCTTCAAAAA+TGG | + | chr1.4:35294560-35294579 | MS.gene41252:CDS | 30.0% | |
| AAGTATCCTATTATTGACGT+TGG | + | chr1.4:35293248-35293267 | MS.gene41252:CDS | 30.0% | |
| AATGAAAGAGTGATAGTTGT+TGG | + | chr1.4:35291774-35291793 | MS.gene41252:CDS | 30.0% | |
| AATTAAGTCTCGAGAGTTAA+AGG | + | chr1.4:35293283-35293302 | MS.gene41252:CDS | 30.0% | |
| ACGTTAGAGATAATTGACAT+TGG | + | chr1.4:35293307-35293326 | MS.gene41252:intron | 30.0% | |
| ATTCAACTGGGTTTAAGAAT+GGG | + | chr1.4:35292243-35292262 | MS.gene41252:CDS | 30.0% | |
| CACCTAAAATTTGCCTAATA+TGG | + | chr1.4:35293366-35293385 | MS.gene41252:intron | 30.0% | |
| CTGAATCTGAATTATTCTTC+AGG | - | chr1.4:35294373-35294392 | None:intergenic | 30.0% | |
| GGATTATATAAGGAATGGAT+TGG | - | chr1.4:35291842-35291861 | None:intergenic | 30.0% | |
| GTACTTGACCTTCATATAAA+AGG | - | chr1.4:35293225-35293244 | None:intergenic | 30.0% | |
| TAATAGTTTAAGGACCAAAG+TGG | + | chr1.4:35293540-35293559 | MS.gene41252:intron | 30.0% | |
| TCGTTTCATCATCAACAAAA+AGG | - | chr1.4:35292681-35292700 | None:intergenic | 30.0% | |
| TCTCTTTCGAGGATTATATA+AGG | - | chr1.4:35291852-35291871 | None:intergenic | 30.0% | |
| TGCTTAGTAAAATGGTTTAC+GGG | + | chr1.4:35293159-35293178 | MS.gene41252:CDS | 30.0% | |
| TTCGAGGATTATATAAGGAA+TGG | - | chr1.4:35291847-35291866 | None:intergenic | 30.0% | |
| ! | ATAATTGACATTGGTTGCTT+TGG | + | chr1.4:35293316-35293335 | MS.gene41252:intron | 30.0% |
| ! | CAAAACAATTTTCTCTTTCG+AGG | - | chr1.4:35291863-35291882 | None:intergenic | 30.0% |
| ! | CTTCAATTTCAGGTACAAAA+GGG | - | chr1.4:35292193-35292212 | None:intergenic | 30.0% |
| ! | CTTTTGTACCTGAAATTGAA+GGG | + | chr1.4:35292192-35292211 | MS.gene41252:CDS | 30.0% |
| ! | TCGAGACTTAATTTTGTGAA+AGG | - | chr1.4:35293276-35293295 | None:intergenic | 30.0% |
| ! | TCTGATGAAGTATTTGTCAA+TGG | + | chr1.4:35293112-35293131 | MS.gene41252:CDS | 30.0% |
| !! | ATGATCATGTTCTTGTTGTT+GGG | + | chr1.4:35292279-35292298 | MS.gene41252:CDS | 30.0% |
| !!! | CCCCATCTAAATGTTATTTT+AGG | - | chr1.4:35294224-35294243 | None:intergenic | 30.0% |
| AAGGCTAAGAATAAGGATTC+TGG | + | chr1.4:35292110-35292129 | MS.gene41252:CDS | 35.0% | |
| AAGGTTCCAACGTCAATAAT+AGG | - | chr1.4:35293257-35293276 | None:intergenic | 35.0% | |
| AGTATGTGGGGGAATAATTA+CGG | - | chr1.4:35293817-35293836 | None:intergenic | 35.0% | |
| CATTCAACTGGGTTTAAGAA+TGG | + | chr1.4:35292242-35292261 | MS.gene41252:CDS | 35.0% | |
| CTTAAGCATTCTATTTCAGC+TGG | - | chr1.4:35294536-35294555 | None:intergenic | 35.0% | |
| GCTGAAATAGAATGCTTAAG+TGG | + | chr1.4:35294536-35294555 | MS.gene41252:CDS | 35.0% | |
| GCTTAGTAAAATGGTTTACG+GGG | + | chr1.4:35293160-35293179 | MS.gene41252:CDS | 35.0% | |
| GGAAAGTGATTCATTCAACT+GGG | + | chr1.4:35292231-35292250 | MS.gene41252:CDS | 35.0% | |
| TAAGAATAAGGATTCTGGTG+AGG | + | chr1.4:35292115-35292134 | MS.gene41252:CDS | 35.0% | |
| TCAACTGTTCTGTGATAAAG+AGG | - | chr1.4:35292050-35292069 | None:intergenic | 35.0% | |
| ! | AAGGGTTGAAGAGTTTTACT+GGG | + | chr1.4:35292210-35292229 | MS.gene41252:CDS | 35.0% |
| ! | ATGTATGATGGAAAAGAAGG+TGG | - | chr1.4:35291969-35291988 | None:intergenic | 35.0% |
| ! | CCTTCAATTTCAGGTACAAA+AGG | - | chr1.4:35292194-35292213 | None:intergenic | 35.0% |
| ! | CCTTTTGTACCTGAAATTGA+AGG | + | chr1.4:35292191-35292210 | MS.gene41252:CDS | 35.0% |
| ! | GAAGTATTTGTCAATGGAGA+TGG | + | chr1.4:35293118-35293137 | MS.gene41252:CDS | 35.0% |
| ! | GACTCTATTATTTTCTGCAC+CGG | + | chr1.4:35294599-35294618 | MS.gene41252:CDS | 35.0% |
| ! | GATGATCATGTTCTTGTTGT+TGG | + | chr1.4:35292278-35292297 | MS.gene41252:CDS | 35.0% |
| ! | GATGGTGATGCTTAGTAAAA+TGG | + | chr1.4:35293151-35293170 | MS.gene41252:CDS | 35.0% |
| ! | GGAATATGAAGGAAGGTTTT+TGG | + | chr1.4:35292142-35292161 | MS.gene41252:CDS | 35.0% |
| ! | GGAATGTATGATGGAAAAGA+AGG | - | chr1.4:35291972-35291991 | None:intergenic | 35.0% |
| ! | GTTAGCTGTTGATTATACGT+AGG | + | chr1.4:35292964-35292983 | MS.gene41252:intron | 35.0% |
| ! | TAAATTTGAGACAGAGCACA+TGG | - | chr1.4:35292533-35292552 | None:intergenic | 35.0% |
| ! | TGTATGATGGAAAAGAAGGT+GGG | - | chr1.4:35291968-35291987 | None:intergenic | 35.0% |
| !! | ATGATGAAGGTTCTGAGAAA+TGG | + | chr1.4:35292081-35292100 | MS.gene41252:CDS | 35.0% |
| !! | GCAATTGACCATTTTTGAAG+AGG | - | chr1.4:35294571-35294590 | None:intergenic | 35.0% |
| !!! | GCTCGCAAAATTGTTTTTTG+AGG | - | chr1.4:35291929-35291948 | None:intergenic | 35.0% |
| AGGTTGAGGAATATGAAGGA+AGG | + | chr1.4:35292135-35292154 | MS.gene41252:CDS | 40.0% | |
| ATATAAAAGGGACCCTCACT+AGG | - | chr1.4:35293212-35293231 | None:intergenic | 40.0% | |
| CTCTTCAACCCTTCAATTTC+AGG | - | chr1.4:35292203-35292222 | None:intergenic | 40.0% | |
| GAAGGTGAAGGCTAAGAATA+AGG | + | chr1.4:35292103-35292122 | MS.gene41252:CDS | 40.0% | |
| GAGAATGCAGAGTATGATGA+AGG | + | chr1.4:35292068-35292087 | MS.gene41252:CDS | 40.0% | |
| GCATTGGATCTTATCAACCA+TGG | + | chr1.4:35292326-35292345 | MS.gene41252:CDS | 40.0% | |
| GGGAAAGTGATTCATTCAAC+TGG | + | chr1.4:35292230-35292249 | MS.gene41252:CDS | 40.0% | |
| GTATGTGGGGGAATAATTAC+GGG | - | chr1.4:35293816-35293835 | None:intergenic | 40.0% | |
| GTATTTGTCAATGGAGATGG+TGG | + | chr1.4:35293121-35293140 | MS.gene41252:CDS | 40.0% | |
| GTTGTTGTGACATGACGAAT+GGG | + | chr1.4:35294481-35294500 | MS.gene41252:intron | 40.0% | |
| TAATTGACGGGATGAATGAG+TGG | + | chr1.4:35292901-35292920 | MS.gene41252:intron | 40.0% | |
| TATGTGGGGGAATAATTACG+GGG | - | chr1.4:35293815-35293834 | None:intergenic | 40.0% | |
| TCAATAGATCAACCCACAAG+TGG | + | chr1.4:35294624-35294643 | MS.gene41252:CDS | 40.0% | |
| TGTTGTTGTGACATGACGAA+TGG | + | chr1.4:35294480-35294499 | MS.gene41252:intron | 40.0% | |
| TTCAATCGTTGTTCGAAGCA+AGG | + | chr1.4:35292358-35292377 | MS.gene41252:CDS | 40.0% | |
| TTCTGGCATGGAAATTGCAT+TGG | + | chr1.4:35292310-35292329 | MS.gene41252:CDS | 40.0% | |
| ! | CAGGTTCACATTTTGTCAAG+GGG | + | chr1.4:35293068-35293087 | MS.gene41252:intron | 40.0% |
| ! | GAAGGGTTGAAGAGTTTTAC+TGG | + | chr1.4:35292209-35292228 | MS.gene41252:CDS | 40.0% |
| ! | GCAGGTTCACATTTTGTCAA+GGG | + | chr1.4:35293067-35293086 | MS.gene41252:intron | 40.0% |
| ! | TCAAGGGGTATGCTGAATTT+GGG | + | chr1.4:35293083-35293102 | MS.gene41252:CDS | 40.0% |
| ! | TGAGGGTCCCTTTTATATGA+AGG | + | chr1.4:35293214-35293233 | MS.gene41252:CDS | 40.0% |
| ! | TGCAGGTTCACATTTTGTCA+AGG | + | chr1.4:35293066-35293085 | MS.gene41252:intron | 40.0% |
| ! | TTCTGAGAAATGGAAGGTGA+AGG | + | chr1.4:35292091-35292110 | MS.gene41252:CDS | 40.0% |
| !! | ATGTTCTTGTTGTTGGGTCT+GGG | + | chr1.4:35292285-35292304 | MS.gene41252:CDS | 40.0% |
| !! | CGATTGAAGTTTTAGCACCA+TGG | - | chr1.4:35292346-35292365 | None:intergenic | 40.0% |
| !! | GGTGAGAGAGTATTGGTTTA+AGG | + | chr1.4:35293561-35293580 | MS.gene41252:intron | 40.0% |
| !! | TGAAGGTTCTGAGAAATGGA+AGG | + | chr1.4:35292085-35292104 | MS.gene41252:CDS | 40.0% |
| !!! | TGAAGGAAGGTTTTTGGTTG+TGG | + | chr1.4:35292148-35292167 | MS.gene41252:CDS | 40.0% |
| AATCTTACCACCTTCCGTGA+AGG | - | chr1.4:35292794-35292813 | None:intergenic | 45.0% | |
| ACGGGGATGTCACGAATTAT+GGG | + | chr1.4:35293177-35293196 | MS.gene41252:CDS | 45.0% | |
| ACGGGGATGTCACGAATTAT+GGG | - | chr1.4:35293196-35293177 | None:intergenic | 45.0% | |
| AGAGTGATAGTTGTTGGAGC+AGG | + | chr1.4:35291780-35291799 | MS.gene41252:CDS | 45.0% | |
| ATCTTACCACCTTCCGTGAA+GGG | - | chr1.4:35292793-35292812 | None:intergenic | 45.0% | |
| CCAATACTCTCTCACCACTT+TGG | - | chr1.4:35293557-35293576 | None:intergenic | 45.0% | |
| CTTCCGTGAAGGGAATATGT+GGG | - | chr1.4:35292783-35292802 | None:intergenic | 45.0% | |
| GATGGAAAAGAAGGTGGGAA+TGG | - | chr1.4:35291963-35291982 | None:intergenic | 45.0% | |
| GATGTCACGAATTATGGGGT+TGG | + | chr1.4:35293182-35293201 | MS.gene41252:CDS | 45.0% | |
| GGTGAGGTTGAGGAATATGA+AGG | + | chr1.4:35292131-35292150 | MS.gene41252:CDS | 45.0% | |
| TAAGGATTCTGGTGAGGTTG+AGG | + | chr1.4:35292121-35292140 | MS.gene41252:CDS | 45.0% | |
| TACGGGGATGTCACGAATTA+TGG | + | chr1.4:35293176-35293195 | MS.gene41252:CDS | 45.0% | |
| TACGGGGATGTCACGAATTA+TGG | - | chr1.4:35293195-35293176 | None:intergenic | 45.0% | |
| TTCCCCACATATTCCCTTCA+CGG | + | chr1.4:35292777-35292796 | MS.gene41252:intron | 45.0% | |
| TTCCGTGAAGGGAATATGTG+GGG | - | chr1.4:35292782-35292801 | None:intergenic | 45.0% | |
| ! | CAAGGGGTATGCTGAATTTG+GGG | + | chr1.4:35293084-35293103 | MS.gene41252:CDS | 45.0% |
| ! | CCAAAGTGGTGAGAGAGTAT+TGG | + | chr1.4:35293554-35293573 | MS.gene41252:intron | 45.0% |
| ! | GTCAAGGGGTATGCTGAATT+TGG | + | chr1.4:35293082-35293101 | MS.gene41252:CDS | 45.0% |
| ! | TCACGAATTATGGGGTTGGT+AGG | + | chr1.4:35293186-35293205 | MS.gene41252:CDS | 45.0% |
| ! | TCAGGCGAGTTACTTTGCTT+GGG | - | chr1.4:35294355-35294374 | None:intergenic | 45.0% |
| ! | TTCAGGCGAGTTACTTTGCT+TGG | - | chr1.4:35294356-35294375 | None:intergenic | 45.0% |
| !! | CATGTTCTTGTTGTTGGGTC+TGG | + | chr1.4:35292284-35292303 | MS.gene41252:CDS | 45.0% |
| !! | GGAGATGGTGGATTTAGTGA+TGG | + | chr1.4:35293133-35293152 | MS.gene41252:CDS | 45.0% |
| !! | GTGGGTTGATCTATTGAAGC+CGG | - | chr1.4:35294621-35294640 | None:intergenic | 45.0% |
| !!! | AGGTTTTTGGTTGTGGCTAG+TGG | + | chr1.4:35292155-35292174 | MS.gene41252:CDS | 45.0% |
| CATATTCCCTTCACGGAAGG+TGG | + | chr1.4:35292784-35292803 | MS.gene41252:intron | 50.0% | |
| CCACATATTCCCTTCACGGA+AGG | + | chr1.4:35292781-35292800 | MS.gene41252:intron | 50.0% | |
| CCTTCCGTGAAGGGAATATG+TGG | - | chr1.4:35292784-35292803 | None:intergenic | 50.0% | |
| CGGGGATGTCACGAATTATG+GGG | + | chr1.4:35293178-35293197 | MS.gene41252:CDS | 50.0% | |
| CGGGGATGTCACGAATTATG+GGG | - | chr1.4:35293197-35293178 | None:intergenic | 50.0% | |
| CTGCTACTGAGAGACCAGAA+GGG | - | chr1.4:35291806-35291825 | None:intergenic | 50.0% | |
| GTTGTTGGGTCTGGGAATTC+TGG | + | chr1.4:35292293-35292312 | MS.gene41252:CDS | 50.0% | |
| ! | CAGGCGAGTTACTTTGCTTG+GGG | - | chr1.4:35294354-35294373 | None:intergenic | 50.0% |
| ! | GAAGGTGGGAATGGTTTGTG+AGG | - | chr1.4:35291954-35291973 | None:intergenic | 50.0% |
| GCTGCTACTGAGAGACCAGA+AGG | - | chr1.4:35291807-35291826 | None:intergenic | 55.0% | |
| TGGGTCTGGGAATTCTGGCA+TGG | + | chr1.4:35292298-35292317 | MS.gene41252:CDS | 55.0% | |
| GTTGTTGGAGCAGGCCCTTC+TGG | + | chr1.4:35291789-35291808 | MS.gene41252:CDS | 60.0% | |
| !! | GGGGTTGGTAGGCCTAGTGA+GGG | + | chr1.4:35293197-35293216 | MS.gene41252:CDS | 60.0% |
| !! | TGGGGTTGGTAGGCCTAGTG+AGG | + | chr1.4:35293196-35293215 | MS.gene41252:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 35291762 | 35294652 | 35291762 | ID=MS.gene41252 |
| chr1.4 | mRNA | 35291762 | 35294652 | 35291762 | ID=MS.gene41252.t1;Parent=MS.gene41252 |
| chr1.4 | exon | 35291762 | 35292379 | 35291762 | ID=MS.gene41252.t1.exon1;Parent=MS.gene41252.t1 |
| chr1.4 | CDS | 35291762 | 35292379 | 35291762 | ID=cds.MS.gene41252.t1;Parent=MS.gene41252.t1 |
| chr1.4 | exon | 35293071 | 35293304 | 35293071 | ID=MS.gene41252.t1.exon2;Parent=MS.gene41252.t1 |
| chr1.4 | CDS | 35293071 | 35293304 | 35293071 | ID=cds.MS.gene41252.t1;Parent=MS.gene41252.t1 |
| chr1.4 | exon | 35294527 | 35294652 | 35294527 | ID=MS.gene41252.t1.exon3;Parent=MS.gene41252.t1 |
| chr1.4 | CDS | 35294527 | 35294652 | 35294527 | ID=cds.MS.gene41252.t1;Parent=MS.gene41252.t1 |
| Gene Sequence |
| Protein sequence |
