Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41320.t1 | XP_024627930.1 | 64.7 | 447 | 132 | 4 | 1 | 440 | 1 | 428 | 5.00E-132 | 481.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41320.t1 | A0A396I0R2 | 63.5 | 540 | 127 | 8 | 1 | 524 | 1 | 486 | 2.2e-129 | 472.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056356 | MS.gene41320 | 0.900701 | 5.63E-78 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41320.t1 | MTR_0029s0140 | 81.944 | 144 | 26 | 0 | 370 | 513 | 241 | 384 | 1.05e-66 | 221 |
| MS.gene41320.t1 | MTR_0029s0140 | 80.769 | 78 | 15 | 0 | 162 | 239 | 162 | 239 | 2.68e-40 | 150 |
| MS.gene41320.t1 | MTR_2g102860 | 81.295 | 139 | 26 | 0 | 378 | 516 | 13 | 151 | 3.74e-66 | 211 |
| MS.gene41320.t1 | MTR_2g020090 | 66.879 | 157 | 51 | 1 | 357 | 513 | 49 | 204 | 3.07e-65 | 211 |
| MS.gene41320.t1 | MTR_5g080310 | 77.181 | 149 | 30 | 1 | 372 | 520 | 122 | 266 | 3.14e-65 | 213 |
| MS.gene41320.t1 | MTR_4g017750 | 80.420 | 143 | 24 | 1 | 371 | 513 | 110 | 248 | 9.37e-65 | 211 |
| MS.gene41320.t1 | MTR_3g058800 | 71.127 | 142 | 40 | 1 | 372 | 513 | 10 | 150 | 2.10e-63 | 204 |
| MS.gene41320.t1 | MTR_6g463490 | 81.197 | 117 | 22 | 0 | 400 | 516 | 3 | 119 | 4.24e-61 | 197 |
| MS.gene41320.t1 | MTR_1g023240 | 72.152 | 158 | 38 | 1 | 353 | 510 | 17 | 168 | 7.86e-60 | 199 |
| MS.gene41320.t1 | MTR_4g023110 | 71.642 | 134 | 37 | 1 | 370 | 503 | 7 | 139 | 7.11e-59 | 192 |
| MS.gene41320.t1 | MTR_8g027455 | 53.205 | 156 | 64 | 4 | 371 | 520 | 24 | 176 | 6.28e-41 | 153 |
| MS.gene41320.t1 | MTR_1g077650 | 64.423 | 104 | 36 | 1 | 371 | 474 | 46 | 148 | 1.48e-38 | 139 |
| MS.gene41320.t1 | MTR_7g035425 | 37.576 | 165 | 88 | 5 | 178 | 330 | 179 | 340 | 2.55e-24 | 104 |
| MS.gene41320.t1 | MTR_7g037680 | 29.384 | 211 | 117 | 5 | 283 | 492 | 17 | 196 | 4.12e-19 | 87.4 |
| MS.gene41320.t1 | MTR_5g053700 | 78.000 | 50 | 7 | 1 | 464 | 513 | 1 | 46 | 1.24e-17 | 77.4 |
| MS.gene41320.t1 | MTR_2g077640 | 28.571 | 217 | 111 | 7 | 240 | 452 | 34 | 210 | 4.37e-17 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 175 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGCTGGTTTAGGCTCTTTC+AGG | 0.183435 | 1.2:+31270375 | MS.gene41320:CDS |
| CATGATTGAGGGTTAGTCTT+AGG | 0.184506 | 1.2:-31272276 | None:intergenic |
| TGTGGGAGGGACCTTGAGCC+TGG | 0.232485 | 1.2:-31272468 | None:intergenic |
| TGGAGGGATTTGTTGTTGTT+GGG | 0.261186 | 1.2:-31269942 | None:intergenic |
| GTGGAGGGATTTGTTGTTGT+TGG | 0.265730 | 1.2:-31269943 | None:intergenic |
| GGGATTTGTTGTAGGGAAAA+AGG | 0.280844 | 1.2:-31269977 | None:intergenic |
| CCGGTTCTTCTTTGCTTTGT+TGG | 0.290328 | 1.2:-31270686 | None:intergenic |
| CCCGCCTATCTTTGGTGAAT+TGG | 0.291684 | 1.2:+31270627 | MS.gene41320:CDS |
| TTCTGTGGTGGGACTGAATA+TGG | 0.291860 | 1.2:-31269908 | None:intergenic |
| TATGGCACCATACCTCCTTA+TGG | 0.295998 | 1.2:+31269854 | MS.gene41320:CDS |
| CTGGCGTCAGCTGAGGCTGC+TGG | 0.296050 | 1.2:-31272312 | None:intergenic |
| ATAACTGCTATCATCACTTT+TGG | 0.303053 | 1.2:+31270317 | MS.gene41320:CDS |
| TTGCTCTTTCCATCAGGTTT+CGG | 0.314043 | 1.2:-31269608 | None:intergenic |
| TGGTGAATTGGTTAAGTATT+GGG | 0.326447 | 1.2:+31270639 | MS.gene41320:CDS |
| TAATGCAGACCAAGTGTTCT+TGG | 0.346146 | 1.2:+31270479 | MS.gene41320:intron |
| CTTGCCGAGGCTATTTCTAA+TGG | 0.350981 | 1.2:+31272127 | MS.gene41320:CDS |
| TGGATTGGCCCGCCTATCTT+TGG | 0.360603 | 1.2:+31270619 | MS.gene41320:CDS |
| CCAGTACATCCTGGATATTA+TGG | 0.365206 | 1.2:+31269836 | MS.gene41320:CDS |
| TCCTCCTCATCTACCGGATA+AGG | 0.372127 | 1.2:-31272523 | None:intergenic |
| TCTTCTAGCCAGGGATCACC+TGG | 0.378638 | 1.2:+31269746 | MS.gene41320:CDS |
| GGATTTGTTGTTGTTGGGGA+AGG | 0.379887 | 1.2:-31269937 | None:intergenic |
| CGAGAATCTCTCGGATAATC+CGG | 0.382446 | 1.2:-31270139 | None:intergenic |
| TTGCCCTTGCTCTTTCCATC+AGG | 0.384668 | 1.2:-31269614 | None:intergenic |
| ATGATTGAGGGTTAGTCTTA+GGG | 0.390145 | 1.2:-31272275 | None:intergenic |
| ATTTGTTGTTGTTGGGGAAG+GGG | 0.399109 | 1.2:-31269935 | None:intergenic |
| TTGTCTCCTCAAACCGCATA+CGG | 0.400455 | 1.2:-31270582 | None:intergenic |
| CCAACAAAGCAAAGAAGAAC+CGG | 0.408497 | 1.2:+31270686 | MS.gene41320:CDS |
| ATCTGCTGCATCTTCTAGCC+AGG | 0.410992 | 1.2:+31269736 | MS.gene41320:CDS |
| GTTGTTGTTGGGGAAGGGGA+AGG | 0.412477 | 1.2:-31269931 | None:intergenic |
| GAAGAACCGGGCGTCGGAAA+AGG | 0.413034 | 1.2:+31270699 | MS.gene41320:CDS |
| GCTATACGGTCTTGGTAACT+TGG | 0.413255 | 1.2:+31272219 | MS.gene41320:CDS |
| GATTGCTTCAGCAGCCGGTT+TGG | 0.416531 | 1.2:-31270281 | None:intergenic |
| TGTTGTTGTTGGGGTTGTGG+TGG | 0.418549 | 1.2:-31270040 | None:intergenic |
| TGAATATGGTGGTAAATGAT+AGG | 0.419203 | 1.2:-31269894 | None:intergenic |
| TGAATAAGCTCCCGCATCTC+TGG | 0.419371 | 1.2:-31272331 | None:intergenic |
| GTTGTTGTTGGGGTTGTGGT+GGG | 0.422252 | 1.2:-31270039 | None:intergenic |
| ATGGCACCATACCTCCTTAT+GGG | 0.425132 | 1.2:+31269855 | MS.gene41320:CDS |
| TTGGTGAATTGGTTAAGTAT+TGG | 0.427319 | 1.2:+31270638 | MS.gene41320:CDS |
| GTTGTGGAGGGATTTGTTGT+AGG | 0.427635 | 1.2:-31269985 | None:intergenic |
| AGGAGCAGCTGGCTCAGTTT+AGG | 0.434219 | 1.2:+31272440 | MS.gene41320:CDS |
| TGTTGTTGTTGGGGAACAGG+TGG | 0.434610 | 1.2:-31270013 | None:intergenic |
| TGGGGAAGGGGAAGGTTCTG+TGG | 0.434746 | 1.2:-31269923 | None:intergenic |
| AATGCAGACCAAGTGTTCTT+GGG | 0.435174 | 1.2:+31270480 | MS.gene41320:intron |
| GTTGTTGTTGGGGAACAGGT+GGG | 0.436449 | 1.2:-31270012 | None:intergenic |
| TTGCCGAGGCTATTTCTAAT+GGG | 0.436783 | 1.2:+31272128 | MS.gene41320:CDS |
| CCTCCTCATCTACCGGATAA+GGG | 0.441831 | 1.2:-31272522 | None:intergenic |
| TCAGCTGACGCCAGAGATGC+GGG | 0.443446 | 1.2:+31272321 | MS.gene41320:CDS |
| CTCGTCGTCGATTCATCTTA+AGG | 0.445948 | 1.2:+31270158 | MS.gene41320:CDS |
| TGGCGTCAGCTGAGGCTGCT+GGG | 0.447507 | 1.2:-31272311 | None:intergenic |
| TTTCTTGTTGGGGCTGTGGT+GGG | 0.448866 | 1.2:-31270066 | None:intergenic |
| AAGAAGAAGGGAAAGCTATA+CGG | 0.450481 | 1.2:+31272205 | MS.gene41320:CDS |
| CCATAATATCCAGGATGTAC+TGG | 0.458343 | 1.2:-31269836 | None:intergenic |
| GATCTGATTGCTTCAGCAGC+CGG | 0.463673 | 1.2:-31270286 | None:intergenic |
| GAAGGGGAAGGTTCTGTGGT+GGG | 0.466513 | 1.2:-31269919 | None:intergenic |
| GGGAGGACCCAGGTGATCCC+TGG | 0.467266 | 1.2:-31269754 | None:intergenic |
| AGGACCCTTCACCATGATTG+AGG | 0.467659 | 1.2:-31272288 | None:intergenic |
| TTAACCAATTCACCAAAGAT+AGG | 0.468585 | 1.2:-31270631 | None:intergenic |
| GATTTGTTGTTGTTGGGGAA+GGG | 0.469554 | 1.2:-31269936 | None:intergenic |
| CACAGCTTCCCAAGAACACT+TGG | 0.469604 | 1.2:-31270488 | None:intergenic |
| AAGAGCCCGTATGCGGTTTG+AGG | 0.473397 | 1.2:+31270576 | MS.gene41320:CDS |
| ACCGGATAAGGGTCAACATT+GGG | 0.473537 | 1.2:-31272511 | None:intergenic |
| CAGGAGTAGCTACACTAGCT+TGG | 0.474445 | 1.2:-31269775 | None:intergenic |
| TTGTGGAGGGATTTGTTGTA+GGG | 0.475008 | 1.2:-31269984 | None:intergenic |
| CTCTTTCCATCAGGTTTCGG+AGG | 0.478074 | 1.2:-31269605 | None:intergenic |
| AAGGGAAAGCTATACGGTCT+TGG | 0.480141 | 1.2:+31272211 | MS.gene41320:CDS |
| GCTCCTCATATGACCTTTGA+CGG | 0.484551 | 1.2:-31272423 | None:intergenic |
| GGAGGGATTTGTTGTTGTTG+GGG | 0.486144 | 1.2:-31269941 | None:intergenic |
| TAGCACGCTCGTCGCAGTAT+TGG | 0.486252 | 1.2:-31270937 | None:intergenic |
| GGAAGGGGAAGGTTCTGTGG+TGG | 0.488345 | 1.2:-31269920 | None:intergenic |
| TTGATGCAACACTACCCTTC+CGG | 0.489648 | 1.2:-31272252 | None:intergenic |
| CGGAGAGCACGCTGAGCGTA+TGG | 0.490492 | 1.2:+31270756 | MS.gene41320:CDS |
| CGAAGAGGGTGGTGGAGAGC+TGG | 0.490661 | 1.2:+31270096 | MS.gene41320:CDS |
| TCCCAATGTTGACCCTTATC+CGG | 0.490951 | 1.2:+31272510 | MS.gene41320:CDS |
| TCGTGAAGCTCGTTAATAAA+CGG | 0.493110 | 1.2:-31270890 | None:intergenic |
| GCGGTATAATACTCACTTAG+TGG | 0.494631 | 1.2:+31269646 | MS.gene41320:CDS |
| GGCTCAGTTTAGGCAAGCCC+AGG | 0.496816 | 1.2:+31272450 | MS.gene41320:CDS |
| TTGGGCGTCTGAGGCGTTCA+AGG | 0.500299 | 1.2:+31270657 | MS.gene41320:CDS |
| AAGAACCGGGCGTCGGAAAA+GGG | 0.501037 | 1.2:+31270700 | MS.gene41320:CDS |
| CGCATCTCTGGCGTCAGCTG+AGG | 0.503299 | 1.2:-31272319 | None:intergenic |
| GAAAGAGCAAGGGCAACAGC+AGG | 0.505028 | 1.2:+31269621 | MS.gene41320:CDS |
| GCAGTAGAAATGACAGGCAT+CGG | 0.507512 | 1.2:-31269695 | None:intergenic |
| ATTCTTTGACCTTCAACACT+TGG | 0.510375 | 1.2:+31272164 | MS.gene41320:CDS |
| AAGATTTGCTTAACCGTCAA+AGG | 0.511841 | 1.2:+31272410 | MS.gene41320:CDS |
| TGAGGAGCAGAAGCCGTCGC+AGG | 0.513097 | 1.2:-31269794 | None:intergenic |
| AATACTGCGACGAGCGTGCT+AGG | 0.515851 | 1.2:+31270939 | MS.gene41320:CDS |
| AGGAGTAGCTACACTAGCTT+GGG | 0.517647 | 1.2:-31269774 | None:intergenic |
| ATGATAGCAGTTATGAATGA+TGG | 0.523463 | 1.2:-31270308 | None:intergenic |
| GCTTCAGCAGCCGGTTTGGA+AGG | 0.524446 | 1.2:-31270277 | None:intergenic |
| AGACAAGAAAGCGGCCACAT+TGG | 0.524562 | 1.2:+31270599 | MS.gene41320:CDS |
| GTGGGAGGGACCTTGAGCCT+GGG | 0.524940 | 1.2:-31272467 | None:intergenic |
| TATGGTGGTAAATGATAGGT+CGG | 0.525246 | 1.2:-31269890 | None:intergenic |
| GGAGGAAGGAAGGTCCCATA+AGG | 0.527593 | 1.2:-31269869 | None:intergenic |
| CTCAGCTGACGCCAGAGATG+CGG | 0.529797 | 1.2:+31272320 | MS.gene41320:CDS |
| AGAAAGCGGCCACATTGGAT+TGG | 0.531391 | 1.2:+31270604 | MS.gene41320:CDS |
| GGACCCTTCACCATGATTGA+GGG | 0.531656 | 1.2:-31272287 | None:intergenic |
| TACTGGAGGGCACATGTAAG+TGG | 0.532234 | 1.2:-31269819 | None:intergenic |
| TCATCATCCTCCTCATCTAC+CGG | 0.536805 | 1.2:-31272529 | None:intergenic |
| CAGTAGAAATGACAGGCATC+GGG | 0.537420 | 1.2:-31269694 | None:intergenic |
| TAACCGTCAAAGGTCATATG+AGG | 0.541572 | 1.2:+31272420 | MS.gene41320:CDS |
| GAAGGTCCCATAAGGAGGTA+TGG | 0.543026 | 1.2:-31269861 | None:intergenic |
| CCAATTCACCAAAGATAGGC+GGG | 0.544604 | 1.2:-31270627 | None:intergenic |
| TTAAAAGCGGCGCACTAGTG+TGG | 0.545514 | 1.2:-31272486 | None:intergenic |
| AAGGTCATATGAGGAGCAGC+TGG | 0.548144 | 1.2:+31272429 | MS.gene41320:CDS |
| TAAAAGCGGCGCACTAGTGT+GGG | 0.551339 | 1.2:-31272485 | None:intergenic |
| CAAGAAAATGTGGTCGAAGA+GGG | 0.555530 | 1.2:+31270082 | MS.gene41320:CDS |
| ATGTGCCCTCCAGTACATCC+TGG | 0.557262 | 1.2:+31269827 | MS.gene41320:CDS |
| CGAGCGTGCTAGGAGTGTGC+AGG | 0.557294 | 1.2:+31270949 | MS.gene41320:CDS |
| AGTTGCTGGAGACAAGAAGA+AGG | 0.557374 | 1.2:+31272192 | MS.gene41320:CDS |
| ATAGGCTAGGAGGTTACGTC+GGG | 0.559517 | 1.2:+31270865 | MS.gene41320:intron |
| TTTAGGCAAGCCCAGGCTCA+AGG | 0.561956 | 1.2:+31272457 | MS.gene41320:CDS |
| CTAAGACTAACCCTCAATCA+TGG | 0.562434 | 1.2:+31272277 | MS.gene41320:CDS |
| GGTATGGTGCCATAATATCC+AGG | 0.563962 | 1.2:-31269845 | None:intergenic |
| GCAAGGGCAACAGCAGGAAG+CGG | 0.568162 | 1.2:+31269627 | MS.gene41320:CDS |
| GTAACTTGGCTGCTAACTAC+CGG | 0.570124 | 1.2:+31272233 | MS.gene41320:CDS |
| ACGCTCGTCGCAGTATTGGC+CGG | 0.570260 | 1.2:-31270933 | None:intergenic |
| TGTCTCCTCAAACCGCATAC+GGG | 0.571839 | 1.2:-31270581 | None:intergenic |
| AATGTGGTCGAAGAGGGTGG+TGG | 0.572688 | 1.2:+31270088 | MS.gene41320:CDS |
| TCTGCTGCATCTTCTAGCCA+GGG | 0.572703 | 1.2:+31269737 | MS.gene41320:CDS |
| TACCGGATAAGGGTCAACAT+TGG | 0.575351 | 1.2:-31272512 | None:intergenic |
| ATGATAGGTCGGAGGAAGGA+AGG | 0.575427 | 1.2:-31269879 | None:intergenic |
| GGTTAAGTATTGGGCGTCTG+AGG | 0.575914 | 1.2:+31270648 | MS.gene41320:CDS |
| CTTAGTGGACGCAGCGACAG+AGG | 0.579770 | 1.2:+31269661 | MS.gene41320:CDS |
| GAAACCTGATGGAAAGAGCA+AGG | 0.580800 | 1.2:+31269610 | MS.gene41320:CDS |
| AGCAAAGAAGAACCGGGCGT+CGG | 0.582886 | 1.2:+31270693 | MS.gene41320:CDS |
| CCCTTATCCGGTAGATGAGG+AGG | 0.583535 | 1.2:+31272522 | MS.gene41320:CDS |
| GGAATGCCTCCGAAACCTGA+TGG | 0.584259 | 1.2:+31269599 | None:intergenic |
| GAGAATCTCTCGGATAATCC+GGG | 0.586945 | 1.2:-31270138 | None:intergenic |
| GTAAATGATAGGTCGGAGGA+AGG | 0.587191 | 1.2:-31269883 | None:intergenic |
| CTAACCCTCAATCATGGTGA+AGG | 0.587704 | 1.2:+31272283 | MS.gene41320:CDS |
| TGAACTTACGAGTTTCCACT+AGG | 0.589440 | 1.2:-31270181 | None:intergenic |
| GGGCACATGTAAGTGGGATG+AGG | 0.589794 | 1.2:-31269812 | None:intergenic |
| GGATGATGAGGATCATGATG+AGG | 0.590861 | 1.2:+31272543 | MS.gene41320:CDS |
| GTAGATGCAGTAGAAATGAC+AGG | 0.591240 | 1.2:-31269701 | None:intergenic |
| TTGAACAGGAGGAGTATGAT+CGG | 0.597123 | 1.2:+31272101 | MS.gene41320:intron |
| CTTGTGACAAATAGGCTAGG+AGG | 0.600406 | 1.2:+31270855 | MS.gene41320:intron |
| AAGCGGCGCACTAGTGTGGG+AGG | 0.600468 | 1.2:-31272482 | None:intergenic |
| CGATTCATCTTAAGGCCTAG+TGG | 0.601629 | 1.2:+31270166 | MS.gene41320:CDS |
| ACAAGAAAATGTGGTCGAAG+AGG | 0.610168 | 1.2:+31270081 | MS.gene41320:CDS |
| CAACAAAGCAAAGAAGAACC+GGG | 0.614725 | 1.2:+31270687 | MS.gene41320:CDS |
| TACTTAGAAGAGCCCGTATG+CGG | 0.616606 | 1.2:+31270569 | MS.gene41320:CDS |
| GTATGATCGGCAGCTTGCCG+AGG | 0.622345 | 1.2:+31272114 | MS.gene41320:CDS |
| TAATATCCAGGATGTACTGG+AGG | 0.622903 | 1.2:-31269833 | None:intergenic |
| ACCAATTCACCAAAGATAGG+CGG | 0.624368 | 1.2:-31270628 | None:intergenic |
| CTTGGCTGCTAACTACCGGA+AGG | 0.625442 | 1.2:+31272237 | MS.gene41320:CDS |
| CTTCTAGCCAGGGATCACCT+GGG | 0.625749 | 1.2:+31269747 | MS.gene41320:CDS |
| AGTAGCTACACTAGCTTGGG+AGG | 0.627476 | 1.2:-31269771 | None:intergenic |
| GTTGCTGGAGACAAGAAGAA+GGG | 0.632114 | 1.2:+31272193 | MS.gene41320:CDS |
| TGACCCTTATCCGGTAGATG+AGG | 0.632870 | 1.2:+31272519 | MS.gene41320:CDS |
| AATAGGCTAGGAGGTTACGT+CGG | 0.632889 | 1.2:+31270864 | MS.gene41320:intron |
| AATCGACGACGAGAATCTCT+CGG | 0.634346 | 1.2:-31270148 | None:intergenic |
| GGAAGGAAGGTCCCATAAGG+AGG | 0.636273 | 1.2:-31269866 | None:intergenic |
| TAGTGTAGCTACTCCTGCGA+CGG | 0.637488 | 1.2:+31269781 | MS.gene41320:CDS |
| TAACCCTCAATCATGGTGAA+GGG | 0.637969 | 1.2:+31272284 | MS.gene41320:CDS |
| GGTAGATGAGGAGGATGATG+AGG | 0.638477 | 1.2:+31272531 | MS.gene41320:CDS |
| AAACCTGATGGAAAGAGCAA+GGG | 0.640222 | 1.2:+31269611 | MS.gene41320:CDS |
| GCAACAGATGTCAAGTCAAG+CGG | 0.642946 | 1.2:+31272378 | MS.gene41320:CDS |
| AGACCCATTAGAAATAGCCT+CGG | 0.644902 | 1.2:-31272131 | None:intergenic |
| GGTGGTAAATGATAGGTCGG+AGG | 0.646104 | 1.2:-31269887 | None:intergenic |
| ACTGGTGGTTGCTTAAGCAA+CGG | 0.650281 | 1.2:+31270736 | MS.gene41320:CDS |
| TCAACATTGGGACTTAAAAG+CGG | 0.653227 | 1.2:-31272499 | None:intergenic |
| AGCGGCGCACTAGTGTGGGA+GGG | 0.654626 | 1.2:-31272481 | None:intergenic |
| CGTCAGCTGAGGCTGCTGGG+AGG | 0.658728 | 1.2:-31272308 | None:intergenic |
| TTGGCTGCTAACTACCGGAA+GGG | 0.659168 | 1.2:+31272238 | MS.gene41320:CDS |
| GGAGGATGCATTCACACTGG+TGG | 0.660778 | 1.2:+31270721 | MS.gene41320:CDS |
| GAAAATGTGGTCGAAGAGGG+TGG | 0.661104 | 1.2:+31270085 | MS.gene41320:CDS |
| AACCGGGCGTCGGAAAAGGG+AGG | 0.663571 | 1.2:+31270703 | MS.gene41320:CDS |
| ACACTAGCTTGGGAGGACCC+AGG | 0.664522 | 1.2:-31269764 | None:intergenic |
| ACAGCCCCAACAAGAAAATG+TGG | 0.669400 | 1.2:+31270072 | MS.gene41320:CDS |
| TTGGAAGACATATAGTGATG+TGG | 0.671013 | 1.2:+31270336 | MS.gene41320:CDS |
| AAGGGAGGATGCATTCACAC+TGG | 0.674246 | 1.2:+31270718 | MS.gene41320:CDS |
| AATATCCAGGATGTACTGGA+GGG | 0.686056 | 1.2:-31269832 | None:intergenic |
| ACTGGAGGGCACATGTAAGT+GGG | 0.711086 | 1.2:-31269818 | None:intergenic |
| TGTGGTGGGACTGAATATGG+TGG | 0.731025 | 1.2:-31269905 | None:intergenic |
| ATAGGCGGGCCAATCCAATG+TGG | 0.757504 | 1.2:-31270613 | None:intergenic |
| GGTTTGAGGAGACAAGAAAG+CGG | 0.763875 | 1.2:+31270590 | MS.gene41320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATCTAAATTAAATGATA+TGG | - | chr1.2:31270810-31270829 | None:intergenic | 15.0% |
| !!! | AAAATTGAGGATTTTATAAA+AGG | + | chr1.2:31271517-31271536 | MS.gene41320:intron | 15.0% |
| !!! | TATTTTGTTATTATTTGAAC+AGG | + | chr1.2:31272087-31272106 | MS.gene41320:intron | 15.0% |
| !!! | TTTTGATAATAAACGAAATA+AGG | - | chr1.2:31272027-31272046 | None:intergenic | 15.0% |
| !! | CAGTAAAAATGAAATTGATA+TGG | - | chr1.2:31271768-31271787 | None:intergenic | 20.0% |
| !! | TCACTATGAAATATATGATT+TGG | + | chr1.2:31271162-31271181 | MS.gene41320:intron | 20.0% |
| !!! | ATTTTTTTTAATCCGAATTG+TGG | + | chr1.2:31271065-31271084 | MS.gene41320:intron | 20.0% |
| !!! | TTTTATTTCTTGTGACAAAT+AGG | + | chr1.2:31270847-31270866 | MS.gene41320:intron | 20.0% |
| ! | AACTAATCATAAGCAATAAC+AGG | - | chr1.2:31272003-31272022 | None:intergenic | 25.0% |
| ! | AATTTCAGTTAAGCAAAAGT+TGG | - | chr1.2:31271098-31271117 | None:intergenic | 25.0% |
| ! | ACTAATCATAAGCAATAACA+GGG | - | chr1.2:31272002-31272021 | None:intergenic | 25.0% |
| ! | ATATATTTCATAGTGAAGAC+TGG | - | chr1.2:31271158-31271177 | None:intergenic | 25.0% |
| ! | ATTTCAGTTAAGCAAAAGTT+GGG | - | chr1.2:31271097-31271116 | None:intergenic | 25.0% |
| ! | TGAAAAGTTTGAGAAAAATC+AGG | + | chr1.2:31271677-31271696 | MS.gene41320:intron | 25.0% |
| ! | TTTGTCAATCTAATGAAATG+AGG | + | chr1.2:31271483-31271502 | MS.gene41320:intron | 25.0% |
| !! | ACTTTTGCTTAACTGAAATT+TGG | + | chr1.2:31271098-31271117 | MS.gene41320:intron | 25.0% |
| !!! | GCTTTTTGAAAGAATAGAAA+AGG | + | chr1.2:31271726-31271745 | MS.gene41320:intron | 25.0% |
| !!! | TTTGTTATTATTTGAACAGG+AGG | + | chr1.2:31272090-31272109 | MS.gene41320:intron | 25.0% |
| AAAGTCGATTAAAATTACCG+CGG | - | chr1.2:31271958-31271977 | None:intergenic | 30.0% | |
| AAGACTCATAAGTCAACATT+AGG | - | chr1.2:31271913-31271932 | None:intergenic | 30.0% | |
| AGCATCAGACCATAAAATTA+AGG | - | chr1.2:31271464-31271483 | None:intergenic | 30.0% | |
| ATGATAGCAGTTATGAATGA+TGG | - | chr1.2:31270311-31270330 | None:intergenic | 30.0% | |
| CATTACATAGCTCAATTCTT+CGG | - | chr1.2:31271834-31271853 | None:intergenic | 30.0% | |
| GGTTTCTGTCAAAAAAATTG+AGG | + | chr1.2:31271504-31271523 | MS.gene41320:intron | 30.0% | |
| TGAATATGGTGGTAAATGAT+AGG | - | chr1.2:31269897-31269916 | None:intergenic | 30.0% | |
| TGAGACTTATGATAAAACTC+TGG | - | chr1.2:31271614-31271633 | None:intergenic | 30.0% | |
| TGGTGAATTGGTTAAGTATT+GGG | + | chr1.2:31270639-31270658 | MS.gene41320:CDS | 30.0% | |
| TGTGAATTATGATCGATTGT+TGG | + | chr1.2:31271564-31271583 | MS.gene41320:intron | 30.0% | |
| TGTTGTTGAATTTCTCTGAT+TGG | + | chr1.2:31271786-31271805 | MS.gene41320:intron | 30.0% | |
| TTAACCAATTCACCAAAGAT+AGG | - | chr1.2:31270634-31270653 | None:intergenic | 30.0% | |
| TTATGATAAAACTCTGGTGA+GGG | - | chr1.2:31271608-31271627 | None:intergenic | 30.0% | |
| TTGGTGAATTGGTTAAGTAT+TGG | + | chr1.2:31270638-31270657 | MS.gene41320:CDS | 30.0% | |
| TTTCAGTTAAGCAAAAGTTG+GGG | - | chr1.2:31271096-31271115 | None:intergenic | 30.0% | |
| ! | AACCTACTGCCTTAATTTTA+TGG | + | chr1.2:31271452-31271471 | MS.gene41320:intron | 30.0% |
| ! | ATAACTGCTATCATCACTTT+TGG | + | chr1.2:31270317-31270336 | MS.gene41320:CDS | 30.0% |
| ! | CTCTTGTTCTAGATATGATT+TGG | + | chr1.2:31271127-31271146 | MS.gene41320:intron | 30.0% |
| ! | GTAGGAATAACTAAGAGTAT+TGG | + | chr1.2:31271400-31271419 | MS.gene41320:intron | 30.0% |
| ! | GTTGTTTAATGATGTTTTCC+CGG | + | chr1.2:31270120-31270139 | MS.gene41320:CDS | 30.0% |
| ! | TTTGATGATACGAAACTGAA+CGG | + | chr1.2:31271256-31271275 | MS.gene41320:intron | 30.0% |
| !!! | AACTTTTTTCCAAGTGTTGA+AGG | - | chr1.2:31272176-31272195 | None:intergenic | 30.0% |
| AAAATTAAGGCAGTAGGTTC+TGG | - | chr1.2:31271451-31271470 | None:intergenic | 35.0% | |
| AAATTAAGGCAGTAGGTTCT+GGG | - | chr1.2:31271450-31271469 | None:intergenic | 35.0% | |
| AACACTTGGAAAAAAGTTGC+TGG | + | chr1.2:31272178-31272197 | MS.gene41320:CDS | 35.0% | |
| AAGAAGAAGGGAAAGCTATA+CGG | + | chr1.2:31272205-31272224 | MS.gene41320:CDS | 35.0% | |
| AATGACAAACAAGACAGAAC+TGG | - | chr1.2:31271039-31271058 | None:intergenic | 35.0% | |
| ATCTCAAGAGTTGCATCTTT+AGG | - | chr1.2:31271639-31271658 | None:intergenic | 35.0% | |
| ATTCTTTGACCTTCAACACT+TGG | + | chr1.2:31272164-31272183 | MS.gene41320:CDS | 35.0% | |
| CGAAGAATTGAGCTATGTAA+TGG | + | chr1.2:31271832-31271851 | MS.gene41320:intron | 35.0% | |
| CTTATGATAAAACTCTGGTG+AGG | - | chr1.2:31271609-31271628 | None:intergenic | 35.0% | |
| GAAACGCACAAAAATAAGTC+CGG | + | chr1.2:31270914-31270933 | MS.gene41320:CDS | 35.0% | |
| GACCATAAAATTAAGGCAGT+AGG | - | chr1.2:31271457-31271476 | None:intergenic | 35.0% | |
| TATGGTGGTAAATGATAGGT+CGG | - | chr1.2:31269893-31269912 | None:intergenic | 35.0% | |
| TCAACATTGGGACTTAAAAG+CGG | - | chr1.2:31272502-31272521 | None:intergenic | 35.0% | |
| TCGTGAAGCTCGTTAATAAA+CGG | - | chr1.2:31270893-31270912 | None:intergenic | 35.0% | |
| TTGGAAGACATATAGTGATG+TGG | + | chr1.2:31270336-31270355 | MS.gene41320:CDS | 35.0% | |
| TTTCTTGTGACAAATAGGCT+AGG | + | chr1.2:31270852-31270871 | MS.gene41320:intron | 35.0% | |
| ! | AAGATTTGCTTAACCGTCAA+AGG | + | chr1.2:31272410-31272429 | MS.gene41320:CDS | 35.0% |
| ! | ATGATAATGAAAAAGAGCGC+TGG | + | chr1.2:31270359-31270378 | MS.gene41320:CDS | 35.0% |
| ! | TTCGACCACATTTTCTTGTT+GGG | - | chr1.2:31270080-31270099 | None:intergenic | 35.0% |
| ! | TTTGTTGTAGGGAAAAAGGT+GGG | - | chr1.2:31269976-31269995 | None:intergenic | 35.0% |
| ! | TTTTAATCCGAATTGTGGTC+TGG | + | chr1.2:31271070-31271089 | MS.gene41320:intron | 35.0% |
| !! | ATGATTGAGGGTTAGTCTTA+GGG | - | chr1.2:31272278-31272297 | None:intergenic | 35.0% |
| !! | ATTTGTTGTAGGGAAAAAGG+TGG | - | chr1.2:31269977-31269996 | None:intergenic | 35.0% |
| !! | CGACTTTGTTGATTCTTACA+AGG | + | chr1.2:31271971-31271990 | MS.gene41320:intron | 35.0% |
| !! | GTTCTGTCTTGTTTGTCATT+TGG | + | chr1.2:31271039-31271058 | MS.gene41320:intron | 35.0% |
| !!! | GCACTATTTTTGTTGCAGTT+TGG | + | chr1.2:31271011-31271030 | MS.gene41320:intron | 35.0% |
| AAACCTGATGGAAAGAGCAA+GGG | + | chr1.2:31269611-31269630 | MS.gene41320:CDS | 40.0% | |
| AATATCCAGGATGTACTGGA+GGG | - | chr1.2:31269835-31269854 | None:intergenic | 40.0% | |
| AATGCAGACCAAGTGTTCTT+GGG | + | chr1.2:31270480-31270499 | MS.gene41320:intron | 40.0% | |
| ACAAGAAAATGTGGTCGAAG+AGG | + | chr1.2:31270081-31270100 | MS.gene41320:CDS | 40.0% | |
| ACCAATTCACCAAAGATAGG+CGG | - | chr1.2:31270631-31270650 | None:intergenic | 40.0% | |
| AGACCCATTAGAAATAGCCT+CGG | - | chr1.2:31272134-31272153 | None:intergenic | 40.0% | |
| CAACAAAGCAAAGAAGAACC+GGG | + | chr1.2:31270687-31270706 | MS.gene41320:CDS | 40.0% | |
| CAAGAAAATGTGGTCGAAGA+GGG | + | chr1.2:31270082-31270101 | MS.gene41320:CDS | 40.0% | |
| CCAACAAAGCAAAGAAGAAC+CGG | + | chr1.2:31270686-31270705 | MS.gene41320:CDS | 40.0% | |
| CCAGTACATCCTGGATATTA+TGG | + | chr1.2:31269836-31269855 | MS.gene41320:CDS | 40.0% | |
| CCATAATATCCAGGATGTAC+TGG | - | chr1.2:31269839-31269858 | None:intergenic | 40.0% | |
| CTAAGACTAACCCTCAATCA+TGG | + | chr1.2:31272277-31272296 | MS.gene41320:CDS | 40.0% | |
| GCGGTATAATACTCACTTAG+TGG | + | chr1.2:31269646-31269665 | MS.gene41320:CDS | 40.0% | |
| GTAGATGCAGTAGAAATGAC+AGG | - | chr1.2:31269704-31269723 | None:intergenic | 40.0% | |
| GTCTGTAACAAGCTTAAGTG+TGG | + | chr1.2:31271209-31271228 | MS.gene41320:intron | 40.0% | |
| TAACCCTCAATCATGGTGAA+GGG | + | chr1.2:31272284-31272303 | MS.gene41320:CDS | 40.0% | |
| TAACCGTCAAAGGTCATATG+AGG | + | chr1.2:31272420-31272439 | MS.gene41320:CDS | 40.0% | |
| TAATATCCAGGATGTACTGG+AGG | - | chr1.2:31269836-31269855 | None:intergenic | 40.0% | |
| TAATGCAGACCAAGTGTTCT+TGG | + | chr1.2:31270479-31270498 | MS.gene41320:intron | 40.0% | |
| TGAACTTACGAGTTTCCACT+AGG | - | chr1.2:31270184-31270203 | None:intergenic | 40.0% | |
| TTAAAATTACCGCGGACAGA+TGG | - | chr1.2:31271950-31271969 | None:intergenic | 40.0% | |
| TTGCTCTTTCCATCAGGTTT+CGG | - | chr1.2:31269611-31269630 | None:intergenic | 40.0% | |
| TTTCATAGTGAAGACTGGCA+AGG | - | chr1.2:31271153-31271172 | None:intergenic | 40.0% | |
| ! | CTTCGACCACATTTTCTTGT+TGG | - | chr1.2:31270081-31270100 | None:intergenic | 40.0% |
| ! | CTTGTCGTATCTCTCAGTTT+TGG | + | chr1.2:31270976-31270995 | MS.gene41320:intron | 40.0% |
| ! | TCGACCACATTTTCTTGTTG+GGG | - | chr1.2:31270079-31270098 | None:intergenic | 40.0% |
| ! | TGTGGTAAGCTTTAGCTCAA+GGG | + | chr1.2:31271227-31271246 | MS.gene41320:intron | 40.0% |
| ! | TTGAACAGGAGGAGTATGAT+CGG | + | chr1.2:31272101-31272120 | MS.gene41320:intron | 40.0% |
| !! | AGAGTATTGGCTCCAAAAGT+TGG | + | chr1.2:31271413-31271432 | MS.gene41320:intron | 40.0% |
| !! | ATGAAAAAGAGCGCTGGTTT+AGG | + | chr1.2:31270365-31270384 | MS.gene41320:CDS | 40.0% |
| !! | ATTTGTTGTTGTTGGGGAAG+GGG | - | chr1.2:31269938-31269957 | None:intergenic | 40.0% |
| !! | CATGATTGAGGGTTAGTCTT+AGG | - | chr1.2:31272279-31272298 | None:intergenic | 40.0% |
| !! | GAGTATTGGCTCCAAAAGTT+GGG | + | chr1.2:31271414-31271433 | MS.gene41320:intron | 40.0% |
| !! | GATTTGTTGTTGTTGGGGAA+GGG | - | chr1.2:31269939-31269958 | None:intergenic | 40.0% |
| !! | GGGATTTGTTGTAGGGAAAA+AGG | - | chr1.2:31269980-31269999 | None:intergenic | 40.0% |
| !! | TGGAGGGATTTGTTGTTGTT+GGG | - | chr1.2:31269945-31269964 | None:intergenic | 40.0% |
| !! | TTGCCGAGGCTATTTCTAAT+GGG | + | chr1.2:31272128-31272147 | MS.gene41320:CDS | 40.0% |
| !! | TTGTGGAGGGATTTGTTGTA+GGG | - | chr1.2:31269987-31270006 | None:intergenic | 40.0% |
| !!! | GAAAAAGGTGGGTTTTGTTG+TGG | - | chr1.2:31269965-31269984 | None:intergenic | 40.0% |
| !!! | TGGTGGGTTTTGTTGTTGTT+GGG | - | chr1.2:31270026-31270045 | None:intergenic | 40.0% |
| !!! | TTTTGTTGTTGTTGGGGAAC+AGG | - | chr1.2:31270019-31270038 | None:intergenic | 40.0% |
| !!! | TTTTGTTGTTGTTGGGGTTG+TGG | - | chr1.2:31270046-31270065 | None:intergenic | 40.0% |
| AAGGGAAAGCTATACGGTCT+TGG | + | chr1.2:31272211-31272230 | MS.gene41320:CDS | 45.0% | |
| AATAGGCTAGGAGGTTACGT+CGG | + | chr1.2:31270864-31270883 | MS.gene41320:intron | 45.0% | |
| AATCGACGACGAGAATCTCT+CGG | - | chr1.2:31270151-31270170 | None:intergenic | 45.0% | |
| ACAGCCCCAACAAGAAAATG+TGG | + | chr1.2:31270072-31270091 | MS.gene41320:CDS | 45.0% | |
| ACCGGATAAGGGTCAACATT+GGG | - | chr1.2:31272514-31272533 | None:intergenic | 45.0% | |
| ACTGGTGGTTGCTTAAGCAA+CGG | + | chr1.2:31270736-31270755 | MS.gene41320:CDS | 45.0% | |
| AGTTGCTGGAGACAAGAAGA+AGG | + | chr1.2:31272192-31272211 | MS.gene41320:CDS | 45.0% | |
| ATGGCACCATACCTCCTTAT+GGG | + | chr1.2:31269855-31269874 | MS.gene41320:CDS | 45.0% | |
| CAGTAGAAATGACAGGCATC+GGG | - | chr1.2:31269697-31269716 | None:intergenic | 45.0% | |
| CCAATTCACCAAAGATAGGC+GGG | - | chr1.2:31270630-31270649 | None:intergenic | 45.0% | |
| CCGGTTCTTCTTTGCTTTGT+TGG | - | chr1.2:31270689-31270708 | None:intergenic | 45.0% | |
| CGAGAATCTCTCGGATAATC+CGG | - | chr1.2:31270142-31270161 | None:intergenic | 45.0% | |
| CGATTCATCTTAAGGCCTAG+TGG | + | chr1.2:31270166-31270185 | MS.gene41320:CDS | 45.0% | |
| CTAACCCTCAATCATGGTGA+AGG | + | chr1.2:31272283-31272302 | MS.gene41320:CDS | 45.0% | |
| CTTGTGACAAATAGGCTAGG+AGG | + | chr1.2:31270855-31270874 | MS.gene41320:intron | 45.0% | |
| GAAACCTGATGGAAAGAGCA+AGG | + | chr1.2:31269610-31269629 | MS.gene41320:CDS | 45.0% | |
| GAGAATCTCTCGGATAATCC+GGG | - | chr1.2:31270141-31270160 | None:intergenic | 45.0% | |
| GATAAAACTCTGGTGAGGGA+AGG | - | chr1.2:31271604-31271623 | None:intergenic | 45.0% | |
| GCAACAGATGTCAAGTCAAG+CGG | + | chr1.2:31272378-31272397 | MS.gene41320:CDS | 45.0% | |
| GCAGTAGAAATGACAGGCAT+CGG | - | chr1.2:31269698-31269717 | None:intergenic | 45.0% | |
| GCTCCTCATATGACCTTTGA+CGG | - | chr1.2:31272426-31272445 | None:intergenic | 45.0% | |
| GGATGATGAGGATCATGATG+AGG | + | chr1.2:31272543-31272562 | MS.gene41320:CDS | 45.0% | |
| GGTTTGAGGAGACAAGAAAG+CGG | + | chr1.2:31270590-31270609 | MS.gene41320:CDS | 45.0% | |
| GTAAATGATAGGTCGGAGGA+AGG | - | chr1.2:31269886-31269905 | None:intergenic | 45.0% | |
| GTAACTTGGCTGCTAACTAC+CGG | + | chr1.2:31272233-31272252 | MS.gene41320:CDS | 45.0% | |
| GTTGCTGGAGACAAGAAGAA+GGG | + | chr1.2:31272193-31272212 | MS.gene41320:CDS | 45.0% | |
| TACCGGATAAGGGTCAACAT+TGG | - | chr1.2:31272515-31272534 | None:intergenic | 45.0% | |
| TACTTAGAAGAGCCCGTATG+CGG | + | chr1.2:31270569-31270588 | MS.gene41320:CDS | 45.0% | |
| TATGGCACCATACCTCCTTA+TGG | + | chr1.2:31269854-31269873 | MS.gene41320:CDS | 45.0% | |
| TCATCATCCTCCTCATCTAC+CGG | - | chr1.2:31272532-31272551 | None:intergenic | 45.0% | |
| TCCCAATGTTGACCCTTATC+CGG | + | chr1.2:31272510-31272529 | MS.gene41320:CDS | 45.0% | |
| TTGATGCAACACTACCCTTC+CGG | - | chr1.2:31272255-31272274 | None:intergenic | 45.0% | |
| TTGTCTCCTCAAACCGCATA+CGG | - | chr1.2:31270585-31270604 | None:intergenic | 45.0% | |
| TTGTGATATCAGCAGCAACG+AGG | - | chr1.2:31271858-31271877 | None:intergenic | 45.0% | |
| ! | ACATTTTCTTGTTGGGGCTG+TGG | - | chr1.2:31270073-31270092 | None:intergenic | 45.0% |
| ! | AGGAGTAGCTACACTAGCTT+GGG | - | chr1.2:31269777-31269796 | None:intergenic | 45.0% |
| ! | ATTGGCTCCAAAAGTTGGGT+GGG | + | chr1.2:31271418-31271437 | MS.gene41320:intron | 45.0% |
| ! | CAGCTTTTTGCCTTCCAAAC+CGG | + | chr1.2:31270267-31270286 | MS.gene41320:intron | 45.0% |
| ! | GACATTTCCCACCCAACTTT+TGG | - | chr1.2:31271428-31271447 | None:intergenic | 45.0% |
| ! | GCTATACGGTCTTGGTAACT+TGG | + | chr1.2:31272219-31272238 | MS.gene41320:CDS | 45.0% |
| ! | GTGTGGTAAGCTTTAGCTCA+AGG | + | chr1.2:31271226-31271245 | MS.gene41320:intron | 45.0% |
| ! | TTCTGTGGTGGGACTGAATA+TGG | - | chr1.2:31269911-31269930 | None:intergenic | 45.0% |
| !! | CTCGTCGTCGATTCATCTTA+AGG | + | chr1.2:31270158-31270177 | MS.gene41320:CDS | 45.0% |
| !! | CTTGCCGAGGCTATTTCTAA+TGG | + | chr1.2:31272127-31272146 | MS.gene41320:CDS | 45.0% |
| !! | GGAGGGATTTGTTGTTGTTG+GGG | - | chr1.2:31269944-31269963 | None:intergenic | 45.0% |
| !! | GGATTTGTTGTTGTTGGGGA+AGG | - | chr1.2:31269940-31269959 | None:intergenic | 45.0% |
| !! | GGTATGGTGCCATAATATCC+AGG | - | chr1.2:31269848-31269867 | None:intergenic | 45.0% |
| !! | GTGGAGGGATTTGTTGTTGT+TGG | - | chr1.2:31269946-31269965 | None:intergenic | 45.0% |
| !! | GTTGCAGCTCATAGTCTTGT+AGG | + | chr1.2:31271382-31271401 | MS.gene41320:intron | 45.0% |
| !! | GTTGTGGAGGGATTTGTTGT+AGG | - | chr1.2:31269949-31269968 | None:intergenic | 45.0% |
| !! | TATTGGCTCCAAAAGTTGGG+TGG | + | chr1.2:31271417-31271436 | MS.gene41320:intron | 45.0% |
| !!! | AAAGGTGGGTTTTGTTGTGG+AGG | - | chr1.2:31269962-31269981 | None:intergenic | 45.0% |
| !!! | AAGGTGGGTTTTGTTGTGGA+GGG | - | chr1.2:31269961-31269980 | None:intergenic | 45.0% |
| !!! | GGTGGGTTTTGTTGTTGTTG+GGG | - | chr1.2:31270025-31270044 | None:intergenic | 45.0% |
| !!! | GTGGTGGGTTTTGTTGTTGT+TGG | - | chr1.2:31270027-31270046 | None:intergenic | 45.0% |
| AAGGGAGGATGCATTCACAC+TGG | + | chr1.2:31270718-31270737 | MS.gene41320:CDS | 50.0% | |
| AAGGTCATATGAGGAGCAGC+TGG | + | chr1.2:31272429-31272448 | MS.gene41320:CDS | 50.0% | |
| AATTACCGCGGACAGATGGT+TGG | - | chr1.2:31271946-31271965 | None:intergenic | 50.0% | |
| AGAAAGCGGCCACATTGGAT+TGG | + | chr1.2:31270604-31270623 | MS.gene41320:CDS | 50.0% | |
| AGACAAGAAAGCGGCCACAT+TGG | + | chr1.2:31270599-31270618 | MS.gene41320:CDS | 50.0% | |
| AGGACCCTTCACCATGATTG+AGG | - | chr1.2:31272291-31272310 | None:intergenic | 50.0% | |
| ATAGGCTAGGAGGTTACGTC+GGG | + | chr1.2:31270865-31270884 | MS.gene41320:intron | 50.0% | |
| ATCTGCTGCATCTTCTAGCC+AGG | + | chr1.2:31269736-31269755 | MS.gene41320:CDS | 50.0% | |
| ATGATAGGTCGGAGGAAGGA+AGG | - | chr1.2:31269882-31269901 | None:intergenic | 50.0% | |
| CACAGCTTCCCAAGAACACT+TGG | - | chr1.2:31270491-31270510 | None:intergenic | 50.0% | |
| CAGGAGTAGCTACACTAGCT+TGG | - | chr1.2:31269778-31269797 | None:intergenic | 50.0% | |
| CCCGCCTATCTTTGGTGAAT+TGG | + | chr1.2:31270627-31270646 | MS.gene41320:CDS | 50.0% | |
| CCTCCTCATCTACCGGATAA+GGG | - | chr1.2:31272525-31272544 | None:intergenic | 50.0% | |
| CTCTTTCCATCAGGTTTCGG+AGG | - | chr1.2:31269608-31269627 | None:intergenic | 50.0% | |
| GAAAATGTGGTCGAAGAGGG+TGG | + | chr1.2:31270085-31270104 | MS.gene41320:CDS | 50.0% | |
| GAAGGTCCCATAAGGAGGTA+TGG | - | chr1.2:31269864-31269883 | None:intergenic | 50.0% | |
| GATCTGATTGCTTCAGCAGC+CGG | - | chr1.2:31270289-31270308 | None:intergenic | 50.0% | |
| GGACCCTTCACCATGATTGA+GGG | - | chr1.2:31272290-31272309 | None:intergenic | 50.0% | |
| GGTAGATGAGGAGGATGATG+AGG | + | chr1.2:31272531-31272550 | MS.gene41320:CDS | 50.0% | |
| GGTGGTAAATGATAGGTCGG+AGG | - | chr1.2:31269890-31269909 | None:intergenic | 50.0% | |
| TAAAAGCGGCGCACTAGTGT+GGG | - | chr1.2:31272488-31272507 | None:intergenic | 50.0% | |
| TAGTGTAGCTACTCCTGCGA+CGG | + | chr1.2:31269781-31269800 | MS.gene41320:CDS | 50.0% | |
| TCCTCCTCATCTACCGGATA+AGG | - | chr1.2:31272526-31272545 | None:intergenic | 50.0% | |
| TCTGCTGCATCTTCTAGCCA+GGG | + | chr1.2:31269737-31269756 | MS.gene41320:CDS | 50.0% | |
| TCTGGTGAGGGAAGGAGTTA+CGG | - | chr1.2:31271596-31271615 | None:intergenic | 50.0% | |
| TGAATAAGCTCCCGCATCTC+TGG | - | chr1.2:31272334-31272353 | None:intergenic | 50.0% | |
| TGACCCTTATCCGGTAGATG+AGG | + | chr1.2:31272519-31272538 | MS.gene41320:CDS | 50.0% | |
| TGTCTCCTCAAACCGCATAC+GGG | - | chr1.2:31270584-31270603 | None:intergenic | 50.0% | |
| TTAAAAGCGGCGCACTAGTG+TGG | - | chr1.2:31272489-31272508 | None:intergenic | 50.0% | |
| TTGCCCTTGCTCTTTCCATC+AGG | - | chr1.2:31269617-31269636 | None:intergenic | 50.0% | |
| TTGGCTGCTAACTACCGGAA+GGG | + | chr1.2:31272238-31272257 | MS.gene41320:CDS | 50.0% | |
| TTTCTTGTTGGGGCTGTGGT+GGG | - | chr1.2:31270069-31270088 | None:intergenic | 50.0% | |
| ! | ACTGGAGGGCACATGTAAGT+GGG | - | chr1.2:31269821-31269840 | None:intergenic | 50.0% |
| ! | AGTAGCTACACTAGCTTGGG+AGG | - | chr1.2:31269774-31269793 | None:intergenic | 50.0% |
| ! | CAGAGCTGCTGCACGTTTTT+CGG | + | chr1.2:31270543-31270562 | MS.gene41320:CDS | 50.0% |
| ! | GTTGTTGTTGGGGAACAGGT+GGG | - | chr1.2:31270015-31270034 | None:intergenic | 50.0% |
| ! | GTTGTTGTTGGGGTTGTGGT+GGG | - | chr1.2:31270042-31270061 | None:intergenic | 50.0% |
| ! | TACTGGAGGGCACATGTAAG+TGG | - | chr1.2:31269822-31269841 | None:intergenic | 50.0% |
| ! | TGTGGTGGGACTGAATATGG+TGG | - | chr1.2:31269908-31269927 | None:intergenic | 50.0% |
| ! | TGTTGTTGTTGGGGAACAGG+TGG | - | chr1.2:31270016-31270035 | None:intergenic | 50.0% |
| ! | TGTTGTTGTTGGGGTTGTGG+TGG | - | chr1.2:31270043-31270062 | None:intergenic | 50.0% |
| ! | TTTTCTTGTTGGGGCTGTGG+TGG | - | chr1.2:31270070-31270089 | None:intergenic | 50.0% |
| !! | GGTTAAGTATTGGGCGTCTG+AGG | + | chr1.2:31270648-31270667 | MS.gene41320:CDS | 50.0% |
| !!! | ACAGGTGGGTTTTGTTGTGG+AGG | - | chr1.2:31270001-31270020 | None:intergenic | 50.0% |
| !!! | CAGGTGGGTTTTGTTGTGGA+GGG | - | chr1.2:31270000-31270019 | None:intergenic | 50.0% |
| !!! | GGAACAGGTGGGTTTTGTTG+TGG | - | chr1.2:31270004-31270023 | None:intergenic | 50.0% |
| AAGAGCCCGTATGCGGTTTG+AGG | + | chr1.2:31270576-31270595 | MS.gene41320:CDS | 55.0% | |
| AATACTGCGACGAGCGTGCT+AGG | + | chr1.2:31270939-31270958 | MS.gene41320:CDS | 55.0% | |
| AATGTGGTCGAAGAGGGTGG+TGG | + | chr1.2:31270088-31270107 | MS.gene41320:CDS | 55.0% | |
| AGCAAAGAAGAACCGGGCGT+CGG | + | chr1.2:31270693-31270712 | MS.gene41320:CDS | 55.0% | |
| ATAGGCGGGCCAATCCAATG+TGG | - | chr1.2:31270616-31270635 | None:intergenic | 55.0% | |
| ATGTGCCCTCCAGTACATCC+TGG | + | chr1.2:31269827-31269846 | MS.gene41320:CDS | 55.0% | |
| CCCTTATCCGGTAGATGAGG+AGG | + | chr1.2:31272522-31272541 | MS.gene41320:CDS | 55.0% | |
| CTTCTAGCCAGGGATCACCT+GGG | + | chr1.2:31269747-31269766 | MS.gene41320:CDS | 55.0% | |
| CTTGGCTGCTAACTACCGGA+AGG | + | chr1.2:31272237-31272256 | MS.gene41320:CDS | 55.0% | |
| GAAAGAGCAAGGGCAACAGC+AGG | + | chr1.2:31269621-31269640 | MS.gene41320:CDS | 55.0% | |
| GAAGGGGAAGGTTCTGTGGT+GGG | - | chr1.2:31269922-31269941 | None:intergenic | 55.0% | |
| GATTGCTTCAGCAGCCGGTT+TGG | - | chr1.2:31270284-31270303 | None:intergenic | 55.0% | |
| GGAAGGAAGGTCCCATAAGG+AGG | - | chr1.2:31269869-31269888 | None:intergenic | 55.0% | |
| GGAGGAAGGAAGGTCCCATA+AGG | - | chr1.2:31269872-31269891 | None:intergenic | 55.0% | |
| GGAGGATGCATTCACACTGG+TGG | + | chr1.2:31270721-31270740 | MS.gene41320:CDS | 55.0% | |
| GGGCACATGTAAGTGGGATG+AGG | - | chr1.2:31269815-31269834 | None:intergenic | 55.0% | |
| GTTGGGGCCAGACCACAATT+CGG | - | chr1.2:31271080-31271099 | None:intergenic | 55.0% | |
| TAGCACGCTCGTCGCAGTAT+TGG | - | chr1.2:31270940-31270959 | None:intergenic | 55.0% | |
| TCTTCTAGCCAGGGATCACC+TGG | + | chr1.2:31269746-31269765 | MS.gene41320:CDS | 55.0% | |
| TGCATCCAACCATCTGTCCG+CGG | + | chr1.2:31271938-31271957 | MS.gene41320:intron | 55.0% | |
| TTTAGGCAAGCCCAGGCTCA+AGG | + | chr1.2:31272457-31272476 | MS.gene41320:CDS | 55.0% | |
| ! | AGGAGCAGCTGGCTCAGTTT+AGG | + | chr1.2:31272440-31272459 | MS.gene41320:CDS | 55.0% |
| ! | GTTGTTGTTGGGGAAGGGGA+AGG | - | chr1.2:31269934-31269953 | None:intergenic | 55.0% |
| !! | AAGAACCGGGCGTCGGAAAA+GGG | + | chr1.2:31270700-31270719 | MS.gene41320:CDS | 55.0% |
| !! | GCGCTGGTTTAGGCTCTTTC+AGG | + | chr1.2:31270375-31270394 | MS.gene41320:CDS | 55.0% |
| !! | TGGATTGGCCCGCCTATCTT+TGG | + | chr1.2:31270619-31270638 | MS.gene41320:CDS | 55.0% |
| CTCAGCTGACGCCAGAGATG+CGG | + | chr1.2:31272320-31272339 | MS.gene41320:CDS | 60.0% | |
| GCAAGGGCAACAGCAGGAAG+CGG | + | chr1.2:31269627-31269646 | MS.gene41320:CDS | 60.0% | |
| GGAAGGGGAAGGTTCTGTGG+TGG | - | chr1.2:31269923-31269942 | None:intergenic | 60.0% | |
| GGCTCAGTTTAGGCAAGCCC+AGG | + | chr1.2:31272450-31272469 | MS.gene41320:CDS | 60.0% | |
| GTATGATCGGCAGCTTGCCG+AGG | + | chr1.2:31272114-31272133 | MS.gene41320:CDS | 60.0% | |
| TCAGCTGACGCCAGAGATGC+GGG | + | chr1.2:31272321-31272340 | MS.gene41320:CDS | 60.0% | |
| TGGGGAAGGGGAAGGTTCTG+TGG | - | chr1.2:31269926-31269945 | None:intergenic | 60.0% | |
| ! | ACACTAGCTTGGGAGGACCC+AGG | - | chr1.2:31269767-31269786 | None:intergenic | 60.0% |
| ! | ATCCTCCCTTTTCCGACGCC+CGG | - | chr1.2:31270708-31270727 | None:intergenic | 60.0% |
| ! | CTTAGTGGACGCAGCGACAG+AGG | + | chr1.2:31269661-31269680 | MS.gene41320:CDS | 60.0% |
| ! | TTGGGCGTCTGAGGCGTTCA+AGG | + | chr1.2:31270657-31270676 | MS.gene41320:CDS | 60.0% |
| !! | ACGCTCGTCGCAGTATTGGC+CGG | - | chr1.2:31270936-31270955 | None:intergenic | 60.0% |
| !! | GAAGAACCGGGCGTCGGAAA+AGG | + | chr1.2:31270699-31270718 | MS.gene41320:CDS | 60.0% |
| !! | GCTTCAGCAGCCGGTTTGGA+AGG | - | chr1.2:31270280-31270299 | None:intergenic | 60.0% |
| AAGCGGCGCACTAGTGTGGG+AGG | - | chr1.2:31272485-31272504 | None:intergenic | 65.0% | |
| AGCGGCGCACTAGTGTGGGA+GGG | - | chr1.2:31272484-31272503 | None:intergenic | 65.0% | |
| CGCATCTCTGGCGTCAGCTG+AGG | - | chr1.2:31272322-31272341 | None:intergenic | 65.0% | |
| GTGGGAGGGACCTTGAGCCT+GGG | - | chr1.2:31272470-31272489 | None:intergenic | 65.0% | |
| TGAGGAGCAGAAGCCGTCGC+AGG | - | chr1.2:31269797-31269816 | None:intergenic | 65.0% | |
| TGGCGTCAGCTGAGGCTGCT+GGG | - | chr1.2:31272314-31272333 | None:intergenic | 65.0% | |
| TGTGGGAGGGACCTTGAGCC+TGG | - | chr1.2:31272471-31272490 | None:intergenic | 65.0% | |
| ! | CGAGCGTGCTAGGAGTGTGC+AGG | + | chr1.2:31270949-31270968 | MS.gene41320:CDS | 65.0% |
| ! | CGGAGAGCACGCTGAGCGTA+TGG | + | chr1.2:31270756-31270775 | MS.gene41320:CDS | 65.0% |
| !! | AACCGGGCGTCGGAAAAGGG+AGG | + | chr1.2:31270703-31270722 | MS.gene41320:CDS | 65.0% |
| !! | CGAAGAGGGTGGTGGAGAGC+TGG | + | chr1.2:31270096-31270115 | MS.gene41320:CDS | 65.0% |
| CGTCAGCTGAGGCTGCTGGG+AGG | - | chr1.2:31272311-31272330 | None:intergenic | 70.0% | |
| CTGGCGTCAGCTGAGGCTGC+TGG | - | chr1.2:31272315-31272334 | None:intergenic | 70.0% | |
| GGGAGGACCCAGGTGATCCC+TGG | - | chr1.2:31269757-31269776 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 31269602 | 31272570 | 31269602 | ID=MS.gene41320 |
| chr1.2 | mRNA | 31269602 | 31272570 | 31269602 | ID=MS.gene41320.t1;Parent=MS.gene41320 |
| chr1.2 | exon | 31269602 | 31270194 | 31269602 | ID=MS.gene41320.t1.exon1;Parent=MS.gene41320.t1 |
| chr1.2 | CDS | 31269602 | 31270194 | 31269602 | ID=cds.MS.gene41320.t1;Parent=MS.gene41320.t1 |
| chr1.2 | exon | 31270270 | 31270396 | 31270270 | ID=MS.gene41320.t1.exon2;Parent=MS.gene41320.t1 |
| chr1.2 | CDS | 31270270 | 31270396 | 31270270 | ID=cds.MS.gene41320.t1;Parent=MS.gene41320.t1 |
| chr1.2 | exon | 31270487 | 31270777 | 31270487 | ID=MS.gene41320.t1.exon3;Parent=MS.gene41320.t1 |
| chr1.2 | CDS | 31270487 | 31270777 | 31270487 | ID=cds.MS.gene41320.t1;Parent=MS.gene41320.t1 |
| chr1.2 | exon | 31270869 | 31270970 | 31270869 | ID=MS.gene41320.t1.exon4;Parent=MS.gene41320.t1 |
| chr1.2 | CDS | 31270869 | 31270970 | 31270869 | ID=cds.MS.gene41320.t1;Parent=MS.gene41320.t1 |
| chr1.2 | exon | 31272109 | 31272570 | 31272109 | ID=MS.gene41320.t1.exon5;Parent=MS.gene41320.t1 |
| chr1.2 | CDS | 31272109 | 31272570 | 31272109 | ID=cds.MS.gene41320.t1;Parent=MS.gene41320.t1 |
| Gene Sequence |
| Protein sequence |
