Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41385.t1 | XP_003592323.2 | 96.8 | 980 | 31 | 0 | 146 | 1125 | 74 | 1053 | 0.00E+00 | 1932.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41385.t1 | P93736 | 71.5 | 971 | 270 | 3 | 148 | 1111 | 114 | 1084 | 0.0e+00 | 1489.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41385.t1 | G7IC05 | 96.8 | 980 | 31 | 0 | 146 | 1125 | 74 | 1053 | 0.0e+00 | 1932.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene87906 | MS.gene41385 | PPI |
| MS.gene41385 | MS.gene47287 | PPI |
| MS.gene49834 | MS.gene41385 | PPI |
| MS.gene55636 | MS.gene41385 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41385.t1 | MTR_1g101620 | 96.480 | 1051 | 36 | 1 | 76 | 1125 | 3 | 1053 | 0.0 | 2101 |
| MS.gene41385.t1 | MTR_6g027620 | 37.893 | 987 | 505 | 25 | 167 | 1123 | 69 | 977 | 0.0 | 639 |
| MS.gene41385.t1 | MTR_2g436760 | 23.310 | 562 | 354 | 18 | 430 | 968 | 415 | 922 | 4.56e-28 | 123 |
| MS.gene41385.t1 | MTR_2g436760 | 28.365 | 208 | 133 | 4 | 156 | 361 | 96 | 289 | 2.49e-15 | 81.6 |
| MS.gene41385.t1 | MTR_4g076850 | 23.580 | 581 | 366 | 20 | 440 | 997 | 340 | 865 | 7.86e-24 | 109 |
| MS.gene41385.t1 | MTR_4g132500 | 22.882 | 909 | 476 | 33 | 162 | 944 | 68 | 877 | 5.00e-21 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41385.t1 | AT1G14610 | 71.032 | 1008 | 280 | 4 | 111 | 1111 | 82 | 1084 | 0.0 | 1536 |
| MS.gene41385.t1 | AT5G16715 | 39.286 | 980 | 490 | 23 | 161 | 1117 | 60 | 957 | 0.0 | 645 |
| MS.gene41385.t1 | AT1G27160 | 56.875 | 160 | 57 | 3 | 880 | 1032 | 11 | 165 | 7.65e-54 | 187 |
| MS.gene41385.t1 | AT4G10320 | 22.412 | 879 | 544 | 28 | 202 | 997 | 40 | 863 | 6.41e-35 | 145 |
| MS.gene41385.t1 | AT5G49030 | 24.188 | 554 | 359 | 15 | 430 | 968 | 613 | 1120 | 6.57e-32 | 135 |
| MS.gene41385.t1 | AT5G49030 | 26.522 | 230 | 147 | 6 | 140 | 361 | 273 | 488 | 7.17e-13 | 73.9 |
| MS.gene41385.t1 | AT5G49030 | 24.188 | 554 | 359 | 15 | 430 | 968 | 427 | 934 | 8.24e-32 | 135 |
| MS.gene41385.t1 | AT5G49030 | 26.522 | 230 | 147 | 6 | 140 | 361 | 87 | 302 | 6.50e-13 | 73.9 |
| MS.gene41385.t1 | AT5G49030 | 24.188 | 554 | 359 | 15 | 430 | 968 | 427 | 934 | 1.02e-31 | 134 |
| MS.gene41385.t1 | AT5G49030 | 27.684 | 177 | 122 | 3 | 187 | 361 | 130 | 302 | 6.24e-13 | 73.9 |
| MS.gene41385.t1 | AT4G04350 | 25.478 | 471 | 232 | 13 | 167 | 540 | 78 | 526 | 1.17e-19 | 95.9 |
Find 294 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATTGAAGCTGATCTTTC+TGG | 0.115651 | 1.4:-78887463 | MS.gene41385:CDS |
| TTTGGACATGCCTCGATTTA+AGG | 0.131070 | 1.4:-78891346 | MS.gene41385:CDS |
| GGAATCTTTCTGCAATTAAA+TGG | 0.135450 | 1.4:+78891631 | None:intergenic |
| ATGGCAACAGCTAGTTCTTT+AGG | 0.206093 | 1.4:+78888946 | None:intergenic |
| TACGACAAGCCTGTTGAATT+TGG | 0.226570 | 1.4:-78891808 | MS.gene41385:CDS |
| AGTATCCACTGGCAGCTAAA+TGG | 0.249493 | 1.4:+78888604 | None:intergenic |
| TCAGAAGAAGATAAAATTTC+CGG | 0.249644 | 1.4:-78895811 | MS.gene41385:intron |
| CGCAAGATGTCCAAGTCTTT+GGG | 0.270359 | 1.4:-78889051 | MS.gene41385:CDS |
| CTGTCAGAGCATGGCCTATA+TGG | 0.272526 | 1.4:+78894786 | None:intergenic |
| CAAGCAACAAACGCTTCTTT+AGG | 0.276874 | 1.4:+78886985 | None:intergenic |
| CTTCTTCTTCTCGAGATCTT+CGG | 0.281621 | 1.4:+78895509 | None:intergenic |
| CAATCAGCCACATATTGTTT+TGG | 0.283513 | 1.4:+78890465 | None:intergenic |
| TTCTGCTCTCTTACATTCCC+TGG | 0.286214 | 1.4:+78888303 | None:intergenic |
| TCTGTTCCCTTTGACTGTAC+TGG | 0.303531 | 1.4:-78889582 | MS.gene41385:CDS |
| ACGCAAGATGTCCAAGTCTT+TGG | 0.303673 | 1.4:-78889052 | MS.gene41385:CDS |
| TGGCAACAGCTAGTTCTTTA+GGG | 0.315037 | 1.4:+78888947 | None:intergenic |
| CAGCTAAATGGGAGATTATC+TGG | 0.323237 | 1.4:+78888616 | None:intergenic |
| TTCTTCTTCTCGAGATCTTC+GGG | 0.329085 | 1.4:+78895510 | None:intergenic |
| AATCCGGGACCCTGACGTTC+TGG | 0.330214 | 1.4:-78889624 | MS.gene41385:CDS |
| AAGCAACAAACGCTTCTTTA+GGG | 0.330590 | 1.4:+78886986 | None:intergenic |
| GAAAGAAGTTTCATTTAATC+CGG | 0.335331 | 1.4:-78889640 | MS.gene41385:CDS |
| AGTAACCTCACCTTGCTAAA+AGG | 0.337229 | 1.4:+78889431 | None:intergenic |
| TGACATACCATGCAGGAATT+TGG | 0.347409 | 1.4:+78889768 | None:intergenic |
| CTACCACTGCTGTGTATTCT+TGG | 0.350432 | 1.4:-78888516 | MS.gene41385:CDS |
| AGACTTGGTTACTTTCGATA+TGG | 0.352174 | 1.4:+78888564 | None:intergenic |
| ATTCGTTGGCGACGAATGTC+TGG | 0.352475 | 1.4:-78894665 | MS.gene41385:CDS |
| TTGCAACAATTACGTCGATT+AGG | 0.353940 | 1.4:-78893335 | MS.gene41385:CDS |
| GCCAATGGTGCAATAAACTA+TGG | 0.355090 | 1.4:-78888702 | MS.gene41385:CDS |
| AGAATAGCATCACATATTAT+AGG | 0.358451 | 1.4:+78891610 | None:intergenic |
| TGTTCGTAACGTTTATCTTC+AGG | 0.360246 | 1.4:+78891679 | None:intergenic |
| TCCATGTGCATCACGAATCA+TGG | 0.362620 | 1.4:+78889074 | None:intergenic |
| GTCCTTCTTCTGACCCTCTA+TGG | 0.364359 | 1.4:+78888927 | None:intergenic |
| AAACGTTACGAACAATTTCA+TGG | 0.369062 | 1.4:-78891670 | MS.gene41385:CDS |
| GAAACTCACAAGACATGATC+TGG | 0.369962 | 1.4:-78893526 | MS.gene41385:CDS |
| GAGACGTACGGTTAGTGAAT+TGG | 0.374358 | 1.4:-78891994 | MS.gene41385:CDS |
| ATTCTTGTTGATCCAAAGTT+CGG | 0.375321 | 1.4:-78891592 | MS.gene41385:CDS |
| CTCAACCACTGCACCGCGTT+TGG | 0.380726 | 1.4:+78895269 | None:intergenic |
| TCCGTGACAAAAGGCATAAA+AGG | 0.380847 | 1.4:+78888352 | None:intergenic |
| TTCTTTCTTCTTGTTAAACT+TGG | 0.382169 | 1.4:+78895434 | None:intergenic |
| TGCATGGTATGTCACTTTAG+AGG | 0.385125 | 1.4:-78889759 | MS.gene41385:CDS |
| GATTATTAACGGCCATCAAC+TGG | 0.385617 | 1.4:-78887663 | MS.gene41385:CDS |
| CGGATAGAACCGGTCAAGAT+TGG | 0.387055 | 1.4:+78895717 | None:intergenic |
| CAAAACAATATGTGGCTGAT+TGG | 0.388450 | 1.4:-78890464 | MS.gene41385:CDS |
| TTATCTGGAGTCAAATTTGC+AGG | 0.390228 | 1.4:+78888631 | None:intergenic |
| GGATGATGTACTGCAGGAAT+TGG | 0.393404 | 1.4:-78889738 | MS.gene41385:CDS |
| CCTCAAAATCATTGGGATCA+TGG | 0.394187 | 1.4:+78891448 | None:intergenic |
| TACAATACTTTGTGGGTGCC+TGG | 0.394218 | 1.4:-78894641 | MS.gene41385:CDS |
| TTCTTGTTGATCCAAAGTTC+GGG | 0.397342 | 1.4:-78891591 | MS.gene41385:CDS |
| GAGAGGAGTATGAATGTTCC+AGG | 0.397987 | 1.4:-78887065 | MS.gene41385:CDS |
| AGACGTACGGTTAGTGAATT+GGG | 0.398274 | 1.4:-78891993 | MS.gene41385:CDS |
| GTCTTGAGCAAACCGTCTTT+CGG | 0.400393 | 1.4:+78888417 | None:intergenic |
| TTTAAAACTCCAAATTCAAC+AGG | 0.401540 | 1.4:+78891799 | None:intergenic |
| CTGTTCCCTTTGACTGTACT+GGG | 0.401639 | 1.4:-78889581 | MS.gene41385:CDS |
| CCACATTCCTCGATACCATT+TGG | 0.404000 | 1.4:+78888901 | None:intergenic |
| ACTTCTTTCCATGATACCTT+TGG | 0.404894 | 1.4:+78889654 | None:intergenic |
| AGTCTACTGTTAAGTCTATC+AGG | 0.404956 | 1.4:-78887887 | MS.gene41385:CDS |
| ACAGCACCTGTCCCGAACTT+TGG | 0.407369 | 1.4:+78891580 | None:intergenic |
| GAAACAAATGTCTAGGCAAT+TGG | 0.413011 | 1.4:-78895202 | MS.gene41385:CDS |
| AACCATGTATCCAGAACGTC+AGG | 0.414020 | 1.4:+78889614 | None:intergenic |
| TTCGCTCTTCTTAGAAGCAT+TGG | 0.414607 | 1.4:+78895302 | None:intergenic |
| GCGTTTGTTGCTTGAGGAAA+CGG | 0.416697 | 1.4:-78886976 | MS.gene41385:CDS |
| GGTTATGTTAGGAATGAAGT+TGG | 0.418816 | 1.4:-78889465 | MS.gene41385:CDS |
| CTCAAGTCGTCTGTGTCATC+AGG | 0.421978 | 1.4:+78889554 | None:intergenic |
| TCCATAGTTTATTGCACCAT+TGG | 0.424169 | 1.4:+78888701 | None:intergenic |
| CGTATCCTGGAACCTTTAGT+AGG | 0.424339 | 1.4:+78891827 | None:intergenic |
| GTATCCACTGGCAGCTAAAT+GGG | 0.428587 | 1.4:+78888605 | None:intergenic |
| ATACCATTGTGGCTTTATCA+TGG | 0.429716 | 1.4:+78890563 | None:intergenic |
| CAACCACCCTTTGAATATCT+AGG | 0.430230 | 1.4:+78888731 | None:intergenic |
| CCGTCTTTCGGAAGCAAAGT+TGG | 0.431003 | 1.4:+78888429 | None:intergenic |
| TTCATGTAGGGTCTTTATAG+AGG | 0.433079 | 1.4:-78890645 | MS.gene41385:intron |
| ACAAGCTAGACCGTATCTAT+AGG | 0.433169 | 1.4:-78892906 | MS.gene41385:intron |
| ATGACCCGTTGAACCGGATC+CGG | 0.433384 | 1.4:+78895740 | None:intergenic |
| TTTCCAACCTCAAAATCATT+GGG | 0.434718 | 1.4:+78891441 | None:intergenic |
| GATCCCATTGAGGTGATAAA+CGG | 0.435011 | 1.4:-78889018 | MS.gene41385:CDS |
| TCAACAGGCTTGTCGTATCC+TGG | 0.435308 | 1.4:+78891814 | None:intergenic |
| TGAAAACGTTAATAAATTCA+AGG | 0.435956 | 1.4:+78891409 | None:intergenic |
| TTCTCGAGATCTTCGGGAAG+GGG | 0.437694 | 1.4:+78895516 | None:intergenic |
| GAATCTTTCTGCAATTAAAT+GGG | 0.438311 | 1.4:+78891632 | None:intergenic |
| ACCCTGACGTTCTGGATACA+TGG | 0.439141 | 1.4:-78889616 | MS.gene41385:CDS |
| ATCCCGTTTATCACCTCAAT+GGG | 0.439700 | 1.4:+78889015 | None:intergenic |
| CGTCTTTCGGAAGCAAAGTT+GGG | 0.440177 | 1.4:+78888430 | None:intergenic |
| CACAATTCTTCCGTGACAAA+AGG | 0.441108 | 1.4:+78888343 | None:intergenic |
| CAATCTTGACCGGTTCTATC+CGG | 0.441340 | 1.4:-78895716 | MS.gene41385:CDS |
| GATTGGATGACCCGTTGAAC+CGG | 0.442503 | 1.4:+78895734 | None:intergenic |
| CACGATTTCTCCACGGCGGT+TGG | 0.442654 | 1.4:+78895165 | None:intergenic |
| GTTGCTCGGATGGTTATGTT+AGG | 0.443065 | 1.4:-78889476 | MS.gene41385:CDS |
| AATGGATGACAAGAGATCTA+AGG | 0.444070 | 1.4:-78892956 | MS.gene41385:CDS |
| AGGACCCTACTAAAGGTTCC+AGG | 0.446579 | 1.4:-78891832 | MS.gene41385:CDS |
| GTGTTGCAATCTCCAGTTGA+TGG | 0.448173 | 1.4:+78887651 | None:intergenic |
| TGGAGTGTGCGAAGTAGTGA+AGG | 0.448433 | 1.4:+78895591 | None:intergenic |
| ACGTCGATTAGGAGCATCTC+TGG | 0.449050 | 1.4:-78893324 | MS.gene41385:CDS |
| TCTCTTTAACCACCTGTGTT+CGG | 0.454059 | 1.4:+78887684 | None:intergenic |
| CCGGTTTCCAAAACAGAAGT+TGG | 0.454528 | 1.4:+78889521 | None:intergenic |
| CCTTTGGTTAGCCTCATCTC+TGG | 0.454640 | 1.4:+78889670 | None:intergenic |
| GTTATGTTAGGAATGAAGTT+GGG | 0.455590 | 1.4:-78889464 | MS.gene41385:CDS |
| ATTGATCCCGAGACTCCGTT+TGG | 0.457470 | 1.4:-78895231 | MS.gene41385:CDS |
| CTCGTACAATTCTAGAGACT+TGG | 0.457664 | 1.4:+78888549 | None:intergenic |
| GGTCTACATACAAGGTTAGA+AGG | 0.458394 | 1.4:-78888982 | MS.gene41385:CDS |
| TTATCACCAAACGGAGTCTC+GGG | 0.461253 | 1.4:+78895225 | None:intergenic |
| GTGGTTAAAGAGATTATTAA+CGG | 0.464410 | 1.4:-78887674 | MS.gene41385:CDS |
| TGGGTACCTGAGTTATAAAC+CGG | 0.466375 | 1.4:+78895697 | None:intergenic |
| CTCAAAATCATTGGGATCAT+GGG | 0.466731 | 1.4:+78891449 | None:intergenic |
| CAGAAACGCCATCCCGGATC+CGG | 0.467375 | 1.4:-78895753 | MS.gene41385:CDS |
| TTCTATCCGGTTTATAACTC+AGG | 0.468719 | 1.4:-78895703 | MS.gene41385:intron |
| CATCCCGGATCCGGTTCAAC+GGG | 0.471427 | 1.4:-78895744 | MS.gene41385:CDS |
| CGTTTGTTGCTTGAGGAAAC+GGG | 0.473518 | 1.4:-78886975 | MS.gene41385:CDS |
| TAACAAGAAGAAAGAAGCTC+AGG | 0.475307 | 1.4:-78895427 | MS.gene41385:intron |
| AACAGAAGCATTACAAAAGA+AGG | 0.477754 | 1.4:-78891310 | MS.gene41385:intron |
| GGATCATTGCCAGAAAAGTA+AGG | 0.477896 | 1.4:+78888451 | None:intergenic |
| AATTCTGAAGATGCTAGGCT+TGG | 0.478510 | 1.4:-78887382 | MS.gene41385:CDS |
| GTGACAGGTGCACTCCATAT+AGG | 0.479206 | 1.4:-78894800 | MS.gene41385:CDS |
| ATCCCATTGAGGTGATAAAC+GGG | 0.482225 | 1.4:-78889017 | MS.gene41385:CDS |
| GAGGCTAACCAAAGGTATCA+TGG | 0.484629 | 1.4:-78889662 | MS.gene41385:CDS |
| CTCGGGATCAATATAATCCT+CGG | 0.485517 | 1.4:+78895242 | None:intergenic |
| ACGATTTGCCATGAGCAAGC+TGG | 0.486673 | 1.4:-78888671 | MS.gene41385:CDS |
| TGGAGTGCACCTGTCACATT+TGG | 0.488660 | 1.4:+78894806 | None:intergenic |
| CTTCTCGAGATCTTCGGGAA+GGG | 0.488660 | 1.4:+78895515 | None:intergenic |
| TATCCCGTTTATCACCTCAA+TGG | 0.488966 | 1.4:+78889014 | None:intergenic |
| AGTTATAAACCGGATAGAAC+CGG | 0.488978 | 1.4:+78895707 | None:intergenic |
| TGGGTGCGTACAACGACCAT+TGG | 0.489906 | 1.4:-78889718 | MS.gene41385:CDS |
| ATAAACGGGATAACACTAGA+AGG | 0.490277 | 1.4:-78889003 | MS.gene41385:CDS |
| GGTTTGCTCAAGACACTTTG+TGG | 0.490582 | 1.4:-78888408 | MS.gene41385:CDS |
| TGCTCTGACAGCTGCGATTG+AGG | 0.494180 | 1.4:-78894774 | MS.gene41385:intron |
| CTTATCACCAAACGGAGTCT+CGG | 0.494621 | 1.4:+78895224 | None:intergenic |
| ACATGCCTCGATTTAAGGCT+CGG | 0.497314 | 1.4:-78891341 | MS.gene41385:CDS |
| CAGCTAGTTCTTTAGGGTCA+AGG | 0.499517 | 1.4:+78888953 | None:intergenic |
| TGACCCGTTGAACCGGATCC+GGG | 0.500130 | 1.4:+78895741 | None:intergenic |
| GAAGCTCTAAATACACAGAA+AGG | 0.500453 | 1.4:+78887413 | None:intergenic |
| CACTAGAAGGTCTACATACA+AGG | 0.501510 | 1.4:-78888990 | MS.gene41385:CDS |
| CGATTTGCCATGAGCAAGCT+GGG | 0.503602 | 1.4:-78888670 | MS.gene41385:CDS |
| GAGATCTTCGGGAAGGGGCG+AGG | 0.507144 | 1.4:+78895521 | None:intergenic |
| GGGTGCGTACAACGACCATT+GGG | 0.507545 | 1.4:-78889717 | MS.gene41385:CDS |
| CACCTAGGTTCCCTTCCAAA+GGG | 0.510524 | 1.4:+78891764 | None:intergenic |
| TGTAAAAGCAGGTTTGGGAA+TGG | 0.510887 | 1.4:-78893382 | MS.gene41385:intron |
| AAGATACTCACAATCACAAA+AGG | 0.511388 | 1.4:+78895005 | None:intergenic |
| CCATGTGCATCACGAATCAT+GGG | 0.513007 | 1.4:+78889075 | None:intergenic |
| CAAGGTGTATTACAGATGGC+TGG | 0.513148 | 1.4:-78889837 | MS.gene41385:intron |
| CACACTCCACTCTTCACCAA+TGG | 0.513784 | 1.4:-78895577 | MS.gene41385:CDS |
| GGCCATCCCAGTACAGTCAA+AGG | 0.513909 | 1.4:+78889575 | None:intergenic |
| TACCATTGTGGCTTTATCAT+GGG | 0.514181 | 1.4:+78890564 | None:intergenic |
| AAAGAAGCGTTTGTTGCTTG+AGG | 0.515163 | 1.4:-78886982 | MS.gene41385:CDS |
| TCACGGATGAGGAAAACATA+AGG | 0.515410 | 1.4:-78890500 | MS.gene41385:CDS |
| AAAGAAGTTTCATTTAATCC+GGG | 0.515836 | 1.4:-78889639 | MS.gene41385:CDS |
| GTTGATCCAAAGTTCGGGAC+AGG | 0.516831 | 1.4:-78891586 | MS.gene41385:CDS |
| CTCATTGTTGCAGAGACGTA+CGG | 0.517701 | 1.4:-78892006 | MS.gene41385:intron |
| GAAAATAACGAGATGCGCCT+TGG | 0.518115 | 1.4:-78890618 | MS.gene41385:CDS |
| TCCCTTTGACTGTACTGGGA+TGG | 0.518559 | 1.4:-78889577 | MS.gene41385:CDS |
| GTGATAAGAAACAAATGTCT+AGG | 0.518708 | 1.4:-78895209 | MS.gene41385:CDS |
| AATAACATTCCCCAAAGACT+TGG | 0.519876 | 1.4:+78889041 | None:intergenic |
| TCACCTAGGTTCCCTTCCAA+AGG | 0.520353 | 1.4:+78891763 | None:intergenic |
| TTGCCTCCACCAAATGTGAC+AGG | 0.522537 | 1.4:-78894815 | MS.gene41385:CDS |
| GGCAACGCCTTCCTTCGCCC+AGG | 0.522639 | 1.4:-78888321 | MS.gene41385:CDS |
| CCACTGCTGTGTATTCTTGG+TGG | 0.523958 | 1.4:-78888513 | MS.gene41385:CDS |
| TGTTCGACTTACAGTAAAAG+AGG | 0.524760 | 1.4:+78887616 | None:intergenic |
| GATTAGGAGCATCTCTGGAT+TGG | 0.525106 | 1.4:-78893319 | MS.gene41385:CDS |
| CTGCCGCAGAAACGCCATCC+CGG | 0.525161 | 1.4:-78895759 | MS.gene41385:CDS |
| TACTTTGTGGGTGCCTGGGA+TGG | 0.526371 | 1.4:-78894636 | MS.gene41385:CDS |
| TCTGCTCTCTTACATTCCCT+GGG | 0.526407 | 1.4:+78888304 | None:intergenic |
| ATTTGTTTCTTATCACCAAA+CGG | 0.527517 | 1.4:+78895216 | None:intergenic |
| TGGCGTTTCTGCGGCAGAGG+AGG | 0.528078 | 1.4:+78895765 | None:intergenic |
| GAACTAGCTGTTGCCATAGA+GGG | 0.528109 | 1.4:-78888940 | MS.gene41385:CDS |
| TCTTCATGCTGTCACGGATG+AGG | 0.529386 | 1.4:-78890511 | MS.gene41385:CDS |
| TTTAGAGGATGATGTACTGC+AGG | 0.530352 | 1.4:-78889744 | MS.gene41385:CDS |
| GGATGGCGTTTCTGCGGCAG+AGG | 0.530589 | 1.4:+78895762 | None:intergenic |
| TATCCAGAACGTCAGGGTCC+CGG | 0.531929 | 1.4:+78889621 | None:intergenic |
| AAATTTGCATACCCTTTGGA+AGG | 0.532012 | 1.4:-78891775 | MS.gene41385:CDS |
| AAAAGAAAGGACCCTACTAA+AGG | 0.533218 | 1.4:-78891839 | MS.gene41385:CDS |
| CAATTAATTCTGAAGATGCT+AGG | 0.534014 | 1.4:-78887387 | MS.gene41385:CDS |
| TCTTCTCGAGATCTTCGGGA+AGG | 0.534076 | 1.4:+78895514 | None:intergenic |
| ACAATACTTTGTGGGTGCCT+GGG | 0.535438 | 1.4:-78894640 | MS.gene41385:CDS |
| CAGAAGAAGGACTTTCCAAA+TGG | 0.535680 | 1.4:-78888916 | MS.gene41385:CDS |
| GCATTTCACGACAGCTATGG+TGG | 0.536878 | 1.4:-78889796 | MS.gene41385:CDS |
| CTCTTACATTCCCTGGGCGA+AGG | 0.538751 | 1.4:+78888310 | None:intergenic |
| AAAAGAAAGGGAAAGAGAGA+AGG | 0.540109 | 1.4:-78895469 | MS.gene41385:CDS |
| CACGGATGAGGAAAACATAA+GGG | 0.540144 | 1.4:-78890499 | MS.gene41385:CDS |
| CCATCCCGGATCCGGTTCAA+CGG | 0.540261 | 1.4:-78895745 | MS.gene41385:CDS |
| GGCTGGAAAACATTCGTGAT+TGG | 0.542932 | 1.4:-78889820 | MS.gene41385:CDS |
| TGATGACACAGACGACTTGA+GGG | 0.543174 | 1.4:-78889552 | MS.gene41385:CDS |
| GGTGCCTGGGATGGATCATG+CGG | 0.543316 | 1.4:-78894627 | MS.gene41385:CDS |
| TCGGGATCAATATAATCCTC+GGG | 0.543850 | 1.4:+78895243 | None:intergenic |
| AGAACTAGCTGTTGCCATAG+AGG | 0.544850 | 1.4:-78888941 | MS.gene41385:CDS |
| CCAACTTTGCTTCCGAAAGA+CGG | 0.545207 | 1.4:-78888429 | MS.gene41385:CDS |
| ACGGGTCATCCAATCTTGAC+CGG | 0.545311 | 1.4:-78895726 | MS.gene41385:CDS |
| TGCTCTCTGCCGAACACAGG+TGG | 0.545823 | 1.4:-78887693 | MS.gene41385:CDS |
| TACATTCCCTGGGCGAAGGA+AGG | 0.546193 | 1.4:+78888314 | None:intergenic |
| GGTGCATTTCACGACAGCTA+TGG | 0.548304 | 1.4:-78889799 | MS.gene41385:CDS |
| TGCAGGATACAATGATTCGT+TGG | 0.548488 | 1.4:-78894679 | MS.gene41385:intron |
| CTAGATATTCAAAGGGTGGT+TGG | 0.548765 | 1.4:-78888730 | MS.gene41385:CDS |
| TACGGCTGTATCTGATATTG+AGG | 0.549538 | 1.4:-78891957 | MS.gene41385:intron |
| CATGCCTCGATTTAAGGCTC+GGG | 0.551078 | 1.4:-78891340 | MS.gene41385:CDS |
| CTGATGACACAGACGACTTG+AGG | 0.551100 | 1.4:-78889553 | MS.gene41385:CDS |
| GAGATCTAAGGCTGTAACAG+AGG | 0.551509 | 1.4:-78892944 | MS.gene41385:CDS |
| TGCCATAGAGGGTCAGAAGA+AGG | 0.552277 | 1.4:-78888929 | MS.gene41385:CDS |
| TGTATGAGACCAGCGCAAAA+CGG | 0.552687 | 1.4:+78888866 | None:intergenic |
| GGAGGCTCTTCATGCTGTCA+CGG | 0.553142 | 1.4:-78890517 | MS.gene41385:CDS |
| GATTATTCCAAAACAATATG+TGG | 0.553287 | 1.4:-78890472 | MS.gene41385:CDS |
| CATTTCACGACAGCTATGGT+GGG | 0.554344 | 1.4:-78889795 | MS.gene41385:CDS |
| GCCATCCCAGTACAGTCAAA+GGG | 0.554762 | 1.4:+78889576 | None:intergenic |
| ATCTGCCAAACGCGGTGCAG+TGG | 0.555210 | 1.4:-78895274 | MS.gene41385:CDS |
| TGTTAAGTCTATCAGGTCAC+TGG | 0.555911 | 1.4:-78887880 | MS.gene41385:CDS |
| AAATTAACCTAGATATTCAA+AGG | 0.556368 | 1.4:-78888738 | MS.gene41385:CDS |
| ATCCACCTCACCTATAGATA+CGG | 0.556874 | 1.4:+78892896 | None:intergenic |
| AAATTGTTGTTGCCACAACT+AGG | 0.557967 | 1.4:-78891741 | MS.gene41385:CDS |
| ATCATCTCCCAGCTTGCTCA+TGG | 0.558192 | 1.4:+78888663 | None:intergenic |
| ACAAATTCAATCGAAGAATG+AGG | 0.559500 | 1.4:-78887021 | MS.gene41385:CDS |
| CATAGTTTCAATCCTAGTTG+TGG | 0.560304 | 1.4:+78891729 | None:intergenic |
| GCAACGCCTTCCTTCGCCCA+GGG | 0.564843 | 1.4:-78888320 | MS.gene41385:CDS |
| AATTTAGGTGGTACGAGTGG+TGG | 0.566209 | 1.4:-78895073 | MS.gene41385:intron |
| GTGCCTGGGATGGATCATGC+GGG | 0.568491 | 1.4:-78894626 | MS.gene41385:CDS |
| GATGATGTACTGCAGGAATT+GGG | 0.569423 | 1.4:-78889737 | MS.gene41385:CDS |
| GAAACGTTCTCTTTATAACC+TGG | 0.571595 | 1.4:+78887047 | None:intergenic |
| GGGTGGTTGGTTATCGCCAA+TGG | 0.571728 | 1.4:-78888717 | MS.gene41385:CDS |
| GCTGGTCTCATACACAGCTC+AGG | 0.573991 | 1.4:-78888857 | MS.gene41385:intron |
| ACTAGGATTGAAACTATGCT+TGG | 0.574325 | 1.4:-78891724 | MS.gene41385:CDS |
| AAATCATTGGGATCATGGGC+CGG | 0.574958 | 1.4:+78891453 | None:intergenic |
| TGTCTGGATACAATACTTTG+TGG | 0.576439 | 1.4:-78894649 | MS.gene41385:CDS |
| GTTCGGGACAGGTGCTGTGA+AGG | 0.577317 | 1.4:-78891575 | MS.gene41385:intron |
| GTATCCTGGAACCTTTAGTA+GGG | 0.577632 | 1.4:+78891828 | None:intergenic |
| CCGTTGAACCGGATCCGGGA+TGG | 0.577853 | 1.4:+78895745 | None:intergenic |
| AGGAATCCATTGGTGAAGAG+TGG | 0.580092 | 1.4:+78895571 | None:intergenic |
| AAACTAACCTCTGTAGCGGA+TGG | 0.580456 | 1.4:+78888259 | None:intergenic |
| AGTGCACCTGTCACATTTGG+TGG | 0.582874 | 1.4:+78894809 | None:intergenic |
| AATTTGCATACCCTTTGGAA+GGG | 0.584345 | 1.4:-78891774 | MS.gene41385:CDS |
| TCGGAGGAGGAGGAATCCAT+TGG | 0.588504 | 1.4:+78895561 | None:intergenic |
| GGAGTGTGCGAAGTAGTGAA+GGG | 0.589267 | 1.4:+78895592 | None:intergenic |
| CAATCGCAGCTGTCAGAGCA+TGG | 0.589443 | 1.4:+78894777 | None:intergenic |
| TTGGGATTGTGTGTTACGTA+CGG | 0.590782 | 1.4:-78891975 | MS.gene41385:CDS |
| ATGTTAGGAATGAAGTTGGG+AGG | 0.591498 | 1.4:-78889461 | MS.gene41385:CDS |
| ATCTCCCATTTAGCTGCCAG+TGG | 0.594947 | 1.4:-78888609 | MS.gene41385:CDS |
| TGAGACCAGCGCAAAACGGA+GGG | 0.595041 | 1.4:+78888870 | None:intergenic |
| CCCATGATTCGTGATGCACA+TGG | 0.595536 | 1.4:-78889075 | MS.gene41385:CDS |
| GAGCTGGAATAATGAAAGAG+TGG | 0.596774 | 1.4:-78887931 | MS.gene41385:CDS |
| AATTAACCTAGATATTCAAA+GGG | 0.596791 | 1.4:-78888737 | MS.gene41385:CDS |
| ACGTTTATCTTCAGGATGAA+CGG | 0.597355 | 1.4:+78891687 | None:intergenic |
| TGAAAGAGTGGAGAATGAGA+TGG | 0.598757 | 1.4:-78887919 | MS.gene41385:CDS |
| ATTTAGGTGGTACGAGTGGT+GGG | 0.599692 | 1.4:-78895072 | MS.gene41385:intron |
| GTTCGGCAGAGAGCAAAAGC+TGG | 0.600785 | 1.4:+78887701 | None:intergenic |
| GTACAACGACCATTGGGTAG+TGG | 0.601060 | 1.4:-78889711 | MS.gene41385:CDS |
| ATTATATTGAGATAAAAGAA+AGG | 0.601884 | 1.4:-78891852 | MS.gene41385:CDS |
| TAACCTAGATATTCAAAGGG+TGG | 0.602041 | 1.4:-78888734 | MS.gene41385:CDS |
| TTGCAGTGATATTGCAAAGG+AGG | 0.604725 | 1.4:-78890535 | MS.gene41385:CDS |
| AAAGCACTTACTTATAGTGA+AGG | 0.607044 | 1.4:+78896067 | None:intergenic |
| TCTAAAGTGACATACCATGC+AGG | 0.608725 | 1.4:+78889761 | None:intergenic |
| TGAAGAAGAGGCCAGAGATG+AGG | 0.610534 | 1.4:-78889681 | MS.gene41385:CDS |
| ATCTCTGGATTGGTCTCGTG+AGG | 0.611026 | 1.4:-78893309 | MS.gene41385:intron |
| CTGGAGTCAAATTTGCAGGA+GGG | 0.612291 | 1.4:+78888635 | None:intergenic |
| GTCTGGATACAATACTTTGT+GGG | 0.612817 | 1.4:-78894648 | MS.gene41385:CDS |
| GATCCGGGATGGCGTTTCTG+CGG | 0.613761 | 1.4:+78895756 | None:intergenic |
| GCACCTGTCACATTTGGTGG+AGG | 0.614161 | 1.4:+78894812 | None:intergenic |
| TAAAAGGATGAAGCAATCGC+AGG | 0.618602 | 1.4:+78888368 | None:intergenic |
| TCTGGAGTCAAATTTGCAGG+AGG | 0.620009 | 1.4:+78888634 | None:intergenic |
| TGGCAAAAGAGAGACGTGAC+AGG | 0.624683 | 1.4:-78887860 | MS.gene41385:intron |
| TTACTGCTTGCAGATTACAC+CGG | 0.626097 | 1.4:-78891472 | MS.gene41385:intron |
| GGCAAATAGAAAGATTAGAG+AGG | 0.626763 | 1.4:-78887082 | MS.gene41385:CDS |
| AATATGTGGCTGATTGGAAG+AGG | 0.627242 | 1.4:-78890458 | MS.gene41385:intron |
| GAAGTAGTGAAGGGAAGTAA+CGG | 0.629251 | 1.4:+78895601 | None:intergenic |
| GGGGTCACCAAATTCCTGCA+TGG | 0.630104 | 1.4:-78889775 | MS.gene41385:CDS |
| AAACTCACAAGACATGATCT+GGG | 0.632724 | 1.4:-78893525 | MS.gene41385:CDS |
| CCAAATGGTATCGAGGAATG+TGG | 0.633977 | 1.4:-78888901 | MS.gene41385:CDS |
| GATGGGAAAGTAAATTCCAA+TGG | 0.634773 | 1.4:-78891381 | MS.gene41385:CDS |
| GAGAGAGTATGACTGAGCAC+CGG | 0.635457 | 1.4:+78895792 | None:intergenic |
| GAATGTTATTGATCCCATTG+AGG | 0.636549 | 1.4:-78889028 | MS.gene41385:CDS |
| TACCCTTTGGAAGGGAACCT+AGG | 0.637827 | 1.4:-78891766 | MS.gene41385:CDS |
| TTATTATGTGCAGGTAGTGG+TGG | 0.638329 | 1.4:-78893571 | MS.gene41385:intron |
| TGATTATCCATCCGCTACAG+AGG | 0.638518 | 1.4:-78888266 | MS.gene41385:intron |
| GGGAAAGTAAATTCCAATGG+TGG | 0.638613 | 1.4:-78891378 | MS.gene41385:CDS |
| ATTCCCGCATGATCCATCCC+AGG | 0.639954 | 1.4:+78894623 | None:intergenic |
| TCATGCGGGAATTGCTACAC+AGG | 0.641822 | 1.4:-78894612 | MS.gene41385:intron |
| TGGCAACAACAATTTCACCT+AGG | 0.642103 | 1.4:+78891749 | None:intergenic |
| TCAACACAGATAGTATCCAC+TGG | 0.644976 | 1.4:+78888593 | None:intergenic |
| GGACTTTCCAAATGGTATCG+AGG | 0.646270 | 1.4:-78888908 | MS.gene41385:CDS |
| ATGAGACCAGCGCAAAACGG+AGG | 0.649022 | 1.4:+78888869 | None:intergenic |
| GCTTCCCGAGCCTTAAATCG+AGG | 0.649064 | 1.4:+78891336 | None:intergenic |
| GAAAAGAAATCTGCCAAACG+CGG | 0.654105 | 1.4:-78895282 | MS.gene41385:CDS |
| CAATTGCAGTGATATTGCAA+AGG | 0.655646 | 1.4:-78890538 | MS.gene41385:CDS |
| AGCCCATGATAAAGCCACAA+TGG | 0.656672 | 1.4:-78890566 | MS.gene41385:CDS |
| ACTTAACAGTAGACTCAATG+AGG | 0.657410 | 1.4:+78887895 | None:intergenic |
| TACAATTTAGGTGGTACGAG+TGG | 0.660228 | 1.4:-78895076 | MS.gene41385:intron |
| GAAGTATAATCCAACCGCCG+TGG | 0.661509 | 1.4:-78895175 | MS.gene41385:CDS |
| GCAAGATGTCCAAGTCTTTG+GGG | 0.663281 | 1.4:-78889050 | MS.gene41385:CDS |
| ATTTCACGACAGCTATGGTG+GGG | 0.663855 | 1.4:-78889794 | MS.gene41385:CDS |
| AAACAAACTAACCTCTGTAG+CGG | 0.665007 | 1.4:+78888255 | None:intergenic |
| CTGCAATTGACATACCATTG+TGG | 0.665557 | 1.4:+78890552 | None:intergenic |
| ATACTCACAATCACAAAAGG+CGG | 0.675300 | 1.4:+78895008 | None:intergenic |
| GTGCAATAAACTATGGAATG+CGG | 0.676125 | 1.4:-78888695 | MS.gene41385:CDS |
| CCACCAAGAATACACAGCAG+TGG | 0.692418 | 1.4:+78888513 | None:intergenic |
| CCAGAGATGAGGCTAACCAA+AGG | 0.697459 | 1.4:-78889670 | MS.gene41385:CDS |
| TGCAGTGGTTGAGAATCCCG+AGG | 0.697853 | 1.4:-78895259 | MS.gene41385:CDS |
| CTACATACAAGGTTAGAAGG+TGG | 0.713369 | 1.4:-78888979 | MS.gene41385:CDS |
| TGCTTCTTGAACATACACCA+AGG | 0.717307 | 1.4:+78890601 | None:intergenic |
| CACTCACGATTTCTCCACGG+CGG | 0.720194 | 1.4:+78895161 | None:intergenic |
| CATGTGCATCACGAATCATG+GGG | 0.721117 | 1.4:+78889076 | None:intergenic |
| ACCATGTATCCAGAACGTCA+GGG | 0.747479 | 1.4:+78889615 | None:intergenic |
| TGACACTCACGATTTCTCCA+CGG | 0.759309 | 1.4:+78895158 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 78886959 | 78896096 | 78886959 | ID=MS.gene41385 |
| chr1.4 | mRNA | 78886959 | 78896096 | 78886959 | ID=MS.gene41385.t1;Parent=MS.gene41385 |
| chr1.4 | exon | 78896052 | 78896096 | 78896052 | ID=MS.gene41385.t1.exon1;Parent=MS.gene41385.t1 |
| chr1.4 | CDS | 78896052 | 78896096 | 78896052 | ID=cds.MS.gene41385.t1;Parent=MS.gene41385.t1 |
| chr1.4 | exon | 78895704 | 78895829 | 78895704 | ID=MS.gene41385.t1.exon2;Parent=MS.gene41385.t1 |
| chr1.4 | CDS | 78895704 | 78895829 | 78895704 | ID=cds.MS.gene41385.t1;Parent=MS.gene41385.t1 |
| chr1.4 | exon | 78895428 | 78895625 | 78895428 | ID=MS.gene41385.t1.exon3;Parent=MS.gene41385.t1 |
| chr1.4 | CDS | 78895428 | 78895625 | 78895428 | ID=cds.MS.gene41385.t1;Parent=MS.gene41385.t1 |
| chr1.4 | exon | 78895168 | 78895343 | 78895168 | ID=MS.gene41385.t1.exon4;Parent=MS.gene41385.t1 |
| chr1.4 | CDS | 78895168 | 78895343 | 78895168 | ID=cds.MS.gene41385.t1;Parent=MS.gene41385.t1 |
| chr1.4 | exon | 78895016 | 78895088 | 78895016 | ID=MS.gene41385.t1.exon5;Parent=MS.gene41385.t1 |
| chr1.4 | CDS | 78895016 | 78895088 | 78895016 | ID=cds.MS.gene41385.t1;Parent=MS.gene41385.t1 |
| chr1.4 | exon | 78894775 | 78894840 | 78894775 | ID=MS.gene41385.t1.exon6;Parent=MS.gene41385.t1 |
| chr1.4 | CDS | 78894775 | 78894840 | 78894775 | ID=cds.MS.gene41385.t1;Parent=MS.gene41385.t1 |
| chr1.4 | exon | 78894613 | 78894696 | 78894613 | ID=MS.gene41385.t1.exon7;Parent=MS.gene41385.t1 |
| chr1.4 | CDS | 78894613 | 78894696 | 78894613 | ID=cds.MS.gene41385.t1;Parent=MS.gene41385.t1 |
| chr1.4 | exon | 78893503 | 78893580 | 78893503 | ID=MS.gene41385.t1.exon8;Parent=MS.gene41385.t1 |
| chr1.4 | CDS | 78893503 | 78893580 | 78893503 | ID=cds.MS.gene41385.t1;Parent=MS.gene41385.t1 |
| chr1.4 | exon | 78893310 | 78893393 | 78893310 | ID=MS.gene41385.t1.exon9;Parent=MS.gene41385.t1 |
| chr1.4 | CDS | 78893310 | 78893393 | 78893310 | ID=cds.MS.gene41385.t1;Parent=MS.gene41385.t1 |
| chr1.4 | exon | 78892907 | 78892986 | 78892907 | ID=MS.gene41385.t1.exon10;Parent=MS.gene41385.t1 |
| chr1.4 | CDS | 78892907 | 78892986 | 78892907 | ID=cds.MS.gene41385.t1;Parent=MS.gene41385.t1 |
| chr1.4 | exon | 78891958 | 78892015 | 78891958 | ID=MS.gene41385.t1.exon11;Parent=MS.gene41385.t1 |
| chr1.4 | CDS | 78891958 | 78892015 | 78891958 | ID=cds.MS.gene41385.t1;Parent=MS.gene41385.t1 |
| chr1.4 | exon | 78891576 | 78891878 | 78891576 | ID=MS.gene41385.t1.exon12;Parent=MS.gene41385.t1 |
| chr1.4 | CDS | 78891576 | 78891878 | 78891576 | ID=cds.MS.gene41385.t1;Parent=MS.gene41385.t1 |
| chr1.4 | exon | 78891311 | 78891481 | 78891311 | ID=MS.gene41385.t1.exon13;Parent=MS.gene41385.t1 |
| chr1.4 | CDS | 78891311 | 78891481 | 78891311 | ID=cds.MS.gene41385.t1;Parent=MS.gene41385.t1 |
| chr1.4 | exon | 78890459 | 78890658 | 78890459 | ID=MS.gene41385.t1.exon14;Parent=MS.gene41385.t1 |
| chr1.4 | CDS | 78890459 | 78890658 | 78890459 | ID=cds.MS.gene41385.t1;Parent=MS.gene41385.t1 |
| chr1.4 | exon | 78889442 | 78889844 | 78889442 | ID=MS.gene41385.t1.exon15;Parent=MS.gene41385.t1 |
| chr1.4 | CDS | 78889442 | 78889844 | 78889442 | ID=cds.MS.gene41385.t1;Parent=MS.gene41385.t1 |
| chr1.4 | exon | 78888858 | 78889109 | 78888858 | ID=MS.gene41385.t1.exon16;Parent=MS.gene41385.t1 |
| chr1.4 | CDS | 78888858 | 78889109 | 78888858 | ID=cds.MS.gene41385.t1;Parent=MS.gene41385.t1 |
| chr1.4 | exon | 78888267 | 78888767 | 78888267 | ID=MS.gene41385.t1.exon17;Parent=MS.gene41385.t1 |
| chr1.4 | CDS | 78888267 | 78888767 | 78888267 | ID=cds.MS.gene41385.t1;Parent=MS.gene41385.t1 |
| chr1.4 | exon | 78887861 | 78887952 | 78887861 | ID=MS.gene41385.t1.exon18;Parent=MS.gene41385.t1 |
| chr1.4 | CDS | 78887861 | 78887952 | 78887861 | ID=cds.MS.gene41385.t1;Parent=MS.gene41385.t1 |
| chr1.4 | exon | 78887628 | 78887727 | 78887628 | ID=MS.gene41385.t1.exon19;Parent=MS.gene41385.t1 |
| chr1.4 | CDS | 78887628 | 78887727 | 78887628 | ID=cds.MS.gene41385.t1;Parent=MS.gene41385.t1 |
| chr1.4 | exon | 78887352 | 78887494 | 78887352 | ID=MS.gene41385.t1.exon20;Parent=MS.gene41385.t1 |
| chr1.4 | CDS | 78887352 | 78887494 | 78887352 | ID=cds.MS.gene41385.t1;Parent=MS.gene41385.t1 |
| chr1.4 | exon | 78886959 | 78887103 | 78886959 | ID=MS.gene41385.t1.exon21;Parent=MS.gene41385.t1 |
| chr1.4 | CDS | 78886959 | 78887103 | 78886959 | ID=cds.MS.gene41385.t1;Parent=MS.gene41385.t1 |
| Gene Sequence |
| Protein sequence |
