Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41607.t1 | XP_003602698.2 | 95.5 | 907 | 40 | 1 | 1 | 907 | 1 | 906 | 0.00E+00 | 1711.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41607.t1 | O36033 | 22.1 | 743 | 473 | 13 | 200 | 897 | 136 | 817 | 1.2e-41 | 173.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41607.t1 | G7J2N4 | 95.5 | 907 | 40 | 1 | 1 | 907 | 1 | 906 | 0.0e+00 | 1711.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049207 | MS.gene41607 | 0.878644 | 2.38E-69 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41607.t1 | MTR_3g098060 | 96.692 | 907 | 29 | 1 | 1 | 907 | 1 | 906 | 0.0 | 1820 |
| MS.gene41607.t1 | MTR_3g098060 | 97.059 | 748 | 21 | 1 | 160 | 907 | 1 | 747 | 0.0 | 1513 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41607.t1 | AT5G17270 | 56.579 | 912 | 346 | 11 | 12 | 903 | 9 | 890 | 0.0 | 1000 |
| MS.gene41607.t1 | AT5G37130 | 52.941 | 901 | 363 | 11 | 12 | 897 | 9 | 863 | 0.0 | 926 |
| MS.gene41607.t1 | AT5G17270 | 59.971 | 682 | 242 | 7 | 223 | 903 | 1 | 652 | 0.0 | 824 |
Find 219 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAACAAGTTCAAAGTTAT+TGG | 0.146384 | 3.4:-88095351 | MS.gene41607:CDS |
| GGGCTTCAGCTTTCAGTTAC+TGG | 0.155224 | 3.4:-88093971 | MS.gene41607:CDS |
| CAGTTCTGCATTGTTGATTC+TGG | 0.167967 | 3.4:-88086398 | MS.gene41607:CDS |
| TTCATAGCATGCATCATTAT+TGG | 0.170074 | 3.4:+88089405 | None:intergenic |
| CAGATGGTTGGTTTGCATTT+GGG | 0.192343 | 3.4:-88088611 | MS.gene41607:CDS |
| CGTTTCCTTGCTTCATTTAG+AGG | 0.204091 | 3.4:-88095293 | MS.gene41607:CDS |
| CCAGATGGTTGGTTTGCATT+TGG | 0.208047 | 3.4:-88088612 | MS.gene41607:CDS |
| GCATATAAACCCCAGATTTC+AGG | 0.220429 | 3.4:+88086048 | None:intergenic |
| TATGAGGATGAAAGATTTAT+TGG | 0.234641 | 3.4:-88095515 | MS.gene41607:CDS |
| AGTTTGAAGATTTAGAATTA+TGG | 0.242230 | 3.4:-88091099 | MS.gene41607:CDS |
| TCATTTAGAGGCTGGAATTA+TGG | 0.261858 | 3.4:-88095281 | MS.gene41607:CDS |
| TGCTAAATGGCACAGAATTA+AGG | 0.263590 | 3.4:-88086028 | MS.gene41607:CDS |
| TTGGATGCCAGTTCCCATTA+AGG | 0.268543 | 3.4:+88093777 | None:intergenic |
| GAACATCAAGAGCAAGTATC+TGG | 0.278279 | 3.4:-88086371 | MS.gene41607:CDS |
| TGGGGACAACCACCCCTTAA+TGG | 0.281452 | 3.4:-88093791 | MS.gene41607:CDS |
| GGCGAAGCCTTACAACAATT+TGG | 0.284961 | 3.4:-88095379 | MS.gene41607:CDS |
| CTTGGTTTCAGGTTGGGATA+TGG | 0.291003 | 3.4:-88092168 | MS.gene41607:intron |
| GCTTCTTGAGCAGAGAGTTT+TGG | 0.297520 | 3.4:-88095446 | MS.gene41607:CDS |
| GTGGATATGGACCTGAAATC+TGG | 0.301364 | 3.4:-88086059 | MS.gene41607:CDS |
| CAGAGAGTACGGGGAACTTT+TGG | 0.301899 | 3.4:-88091155 | MS.gene41607:CDS |
| GCGATATCTTGCGTATTAGA+TGG | 0.305842 | 3.4:-88091928 | MS.gene41607:CDS |
| GGAATTCTTTCTTCAATTGC+TGG | 0.311084 | 3.4:+88091315 | None:intergenic |
| AGAACAAGTTCAAAGTTATT+GGG | 0.313258 | 3.4:-88095350 | MS.gene41607:CDS |
| AAGCATCTTTAGAACTTTGC+AGG | 0.313431 | 3.4:-88085477 | MS.gene41607:CDS |
| CTTTCAGTTACTGGGGTACT+TGG | 0.317872 | 3.4:-88093962 | MS.gene41607:CDS |
| CTCATGTTCACAGCGCTCTC+TGG | 0.318685 | 3.4:-88088860 | MS.gene41607:intron |
| GGCTTCAGCTTTCAGTTACT+GGG | 0.324563 | 3.4:-88093970 | MS.gene41607:CDS |
| TCTGGGGTTTATATGCTAAA+TGG | 0.325384 | 3.4:-88086041 | MS.gene41607:CDS |
| GACGAAACAGCTGGCAACTC+TGG | 0.331696 | 3.4:-88087250 | MS.gene41607:CDS |
| GTTTGAAGATTTAGAATTAT+GGG | 0.342825 | 3.4:-88091098 | MS.gene41607:CDS |
| CTTCAGTTGTGGTGTTTACA+TGG | 0.345126 | 3.4:-88091292 | MS.gene41607:CDS |
| GGCTTCTTTAAATGCAATAA+AGG | 0.345159 | 3.4:+88087449 | None:intergenic |
| TTGGTGCGTTGTGGCTTGAT+AGG | 0.351636 | 3.4:-88091136 | MS.gene41607:CDS |
| ATGCAGAACTGATCTGTATT+AGG | 0.353405 | 3.4:+88086410 | None:intergenic |
| AGAAGAATTCAAGGATATTC+AGG | 0.355270 | 3.4:-88085257 | MS.gene41607:CDS |
| AGCTAGGCATTGAATTTGAT+TGG | 0.355854 | 3.4:+88085206 | None:intergenic |
| ACAAGTACCATTTGTGCCTT+TGG | 0.357171 | 3.4:+88093838 | None:intergenic |
| TGGAAAGTTCTCGAATCTTC+AGG | 0.358584 | 3.4:-88095720 | MS.gene41607:intron |
| GAGTCAGCTGAGATGGCAGC+TGG | 0.364585 | 3.4:-88093992 | MS.gene41607:CDS |
| CAACAGCTGTTGAGCTCATC+AGG | 0.366111 | 3.4:-88090948 | MS.gene41607:CDS |
| GAGCTCGTAGCGACGGATTC+CGG | 0.372523 | 3.4:+88096802 | None:intergenic |
| AGGTCACAAGACATGGAAAA+TGG | 0.375037 | 3.4:-88093643 | MS.gene41607:CDS |
| AAGCTGGAAGATGAGTTTAC+TGG | 0.383074 | 3.4:+88096649 | None:intergenic |
| AATGTGCAGAATGGGACATT+TGG | 0.388764 | 3.4:-88095781 | MS.gene41607:CDS |
| GGGGACAACCACCCCTTAAT+GGG | 0.389596 | 3.4:-88093790 | MS.gene41607:CDS |
| TTTCTAAGATGTTGCTTATG+AGG | 0.395579 | 3.4:-88095531 | MS.gene41607:CDS |
| CTTGATAGGGGAGGCAATAA+AGG | 0.395625 | 3.4:-88091122 | MS.gene41607:CDS |
| CTCTGACACAGAAGAATTCA+AGG | 0.395784 | 3.4:-88085266 | MS.gene41607:CDS |
| TACCATAACCTAGGGTCATT+TGG | 0.397459 | 3.4:+88090907 | None:intergenic |
| GGTAAGGTCAGATTCTTCTA+AGG | 0.397773 | 3.4:+88096823 | None:intergenic |
| CCCTTCCAAGCCACCAAGTA+AGG | 0.397979 | 3.4:+88095473 | None:intergenic |
| GGGATCGAACTTGCTTCAAA+AGG | 0.399335 | 3.4:+88085980 | None:intergenic |
| TGGATGCCAGTTCCCATTAA+GGG | 0.402396 | 3.4:+88093778 | None:intergenic |
| CTCTGAAACATCTGACATAC+TGG | 0.403196 | 3.4:-88093707 | MS.gene41607:CDS |
| AATACTAAACTTGAACTTCA+AGG | 0.404380 | 3.4:+88087428 | None:intergenic |
| TCTTTCAGGGTTCTGATACA+TGG | 0.404459 | 3.4:-88085531 | MS.gene41607:intron |
| TTAGAAGAATCTGACCTTAC+CGG | 0.407554 | 3.4:-88096821 | MS.gene41607:CDS |
| ACCGAGATTCCCTTTGTCTC+TGG | 0.411195 | 3.4:-88095813 | MS.gene41607:CDS |
| TTGCTGCCACCGAATTCTTC+CGG | 0.411865 | 3.4:-88096617 | MS.gene41607:CDS |
| GGAAGATGAGTTTACTGGAT+TGG | 0.416067 | 3.4:+88096654 | None:intergenic |
| GATGAGGTCATCGGAGGATT+CGG | 0.421714 | 3.4:+88096730 | None:intergenic |
| CAATGAAGTAAGAGAAATGC+TGG | 0.422566 | 3.4:+88092120 | None:intergenic |
| TTTACTCAATGTAATTTCAC+TGG | 0.423982 | 3.4:-88096467 | MS.gene41607:CDS |
| GCTAAATGGCACAGAATTAA+GGG | 0.424112 | 3.4:-88086027 | MS.gene41607:CDS |
| GAAGATGAGTTTACTGGATT+GGG | 0.424162 | 3.4:+88096655 | None:intergenic |
| ATATTATTCTAGGTGCTCCT+TGG | 0.424175 | 3.4:-88089437 | MS.gene41607:intron |
| TTGTAATTGCAGGCCTTTGA+AGG | 0.426206 | 3.4:-88095846 | MS.gene41607:intron |
| TTCCAAGCTTCCCCATTGTC+GGG | 0.427778 | 3.4:+88088033 | None:intergenic |
| TTCAGCTCGATCCCGACAAT+GGG | 0.429116 | 3.4:-88088044 | MS.gene41607:CDS |
| AACCGTTCGCCGGAAGAATT+CGG | 0.429241 | 3.4:+88096608 | None:intergenic |
| GCCTTACTTGGTGGCTTGGA+AGG | 0.434417 | 3.4:-88095474 | MS.gene41607:CDS |
| TATTATTCTAGGTGCTCCTT+GGG | 0.437049 | 3.4:-88089436 | MS.gene41607:intron |
| ATTCCAAGCTTCCCCATTGT+CGG | 0.437892 | 3.4:+88088032 | None:intergenic |
| TGTTGTGTTGCTGTCATGTT+GGG | 0.438494 | 3.4:+88093607 | None:intergenic |
| TGAAGTGCCAAATTGTTGTA+AGG | 0.441577 | 3.4:+88095372 | None:intergenic |
| AGAAGCCTTACTTGGTGGCT+TGG | 0.445385 | 3.4:-88095478 | MS.gene41607:CDS |
| TCCTCTATTGTATGCACTGC+GGG | 0.445541 | 3.4:+88088837 | None:intergenic |
| GACCAAATGACCCTAGGTTA+TGG | 0.446312 | 3.4:-88090909 | MS.gene41607:intron |
| CATGGCTGTCATCACATGTT+TGG | 0.447646 | 3.4:+88093758 | None:intergenic |
| GGGAACTCTTCTCGATTAGA+AGG | 0.448051 | 3.4:+88093563 | None:intergenic |
| TTGGGCGCGTAATTATCTAA+TGG | 0.448063 | 3.4:-88095762 | MS.gene41607:CDS |
| GGCTGAACCAAAGGCACAAA+TGG | 0.448917 | 3.4:-88093845 | MS.gene41607:CDS |
| GTTCAAAGTTATTGGGATGT+TGG | 0.448918 | 3.4:-88095343 | MS.gene41607:CDS |
| TCTTTCAATTTCAGAGAGTA+CGG | 0.449502 | 3.4:-88091166 | MS.gene41607:intron |
| TGGTGCGTTGTGGCTTGATA+GGG | 0.449734 | 3.4:-88091135 | MS.gene41607:CDS |
| TCCTTGCTTCATTTAGAGGC+TGG | 0.450831 | 3.4:-88095289 | MS.gene41607:CDS |
| ATTTGGGGCTGCTGCATTGA+AGG | 0.451184 | 3.4:-88088595 | MS.gene41607:intron |
| TGGCTAGTATTCCCGCTTTG+AGG | 0.451624 | 3.4:-88091272 | MS.gene41607:CDS |
| ACGTTGCAATTCATCGTGTC+GGG | 0.451972 | 3.4:+88093543 | None:intergenic |
| TGGGATGTTGGTTTGCATGA+TGG | 0.452544 | 3.4:-88095331 | MS.gene41607:CDS |
| AACCACCCCTTAATGGGAAC+TGG | 0.458196 | 3.4:-88093784 | MS.gene41607:CDS |
| ATCCCGACAATGGGGAAGCT+TGG | 0.469879 | 3.4:-88088035 | MS.gene41607:CDS |
| GGAGCGTGCGTTACTGATGA+TGG | 0.470166 | 3.4:-88091882 | MS.gene41607:CDS |
| CCAAATGCAAACCAACCATC+TGG | 0.472326 | 3.4:+88088612 | None:intergenic |
| TGACATGGAAATCAGTCTCT+TGG | 0.475397 | 3.4:-88090980 | MS.gene41607:intron |
| GAACAATTAATGTTGTCGCT+TGG | 0.476777 | 3.4:-88086332 | MS.gene41607:CDS |
| GAATTAGAAGCCTTACTTGG+TGG | 0.477244 | 3.4:-88095483 | MS.gene41607:CDS |
| CTTTCAATTTCAGAGAGTAC+GGG | 0.479591 | 3.4:-88091165 | MS.gene41607:intron |
| AGAACTTTGCAGGGTGTACA+TGG | 0.480735 | 3.4:-88085467 | MS.gene41607:CDS |
| ATGTGCAGAATGGGACATTT+GGG | 0.483038 | 3.4:-88095780 | MS.gene41607:CDS |
| AGATGGTTGGTTTGCATTTG+GGG | 0.484144 | 3.4:-88088610 | MS.gene41607:CDS |
| GGAATTATGGAATATGCATA+TGG | 0.485459 | 3.4:-88095268 | MS.gene41607:CDS |
| CAACATGACAGCAACACAAC+AGG | 0.486247 | 3.4:-88093605 | MS.gene41607:CDS |
| TTAGAATTAGAAGCCTTACT+TGG | 0.486988 | 3.4:-88095486 | MS.gene41607:CDS |
| GCTGATGGTTCTGACTTACT+TGG | 0.488565 | 3.4:-88095740 | MS.gene41607:CDS |
| GAATCAATTGCCTCAATGTA+AGG | 0.492103 | 3.4:+88092143 | None:intergenic |
| TGGATATGGACCTGAAATCT+GGG | 0.493187 | 3.4:-88086058 | MS.gene41607:CDS |
| CACATCAAGTGGCAGTATCA+AGG | 0.493896 | 3.4:-88085437 | MS.gene41607:CDS |
| TGGTTTCCGTACCGTACATC+AGG | 0.494727 | 3.4:-88093942 | MS.gene41607:intron |
| TGAATTTGAATGTGCAGAAT+GGG | 0.497060 | 3.4:-88095789 | MS.gene41607:CDS |
| TACGTTGCAATTCATCGTGT+CGG | 0.498329 | 3.4:+88093542 | None:intergenic |
| CGATATCTTGCGTATTAGAT+GGG | 0.499932 | 3.4:-88091927 | MS.gene41607:CDS |
| GGATCGAACTTGCTTCAAAA+GGG | 0.500443 | 3.4:+88085981 | None:intergenic |
| TACTGTGTTTACCTGATGTA+CGG | 0.500562 | 3.4:+88093931 | None:intergenic |
| ACGGTTCTACTCCGAGTTGG+TGG | 0.503869 | 3.4:-88096591 | MS.gene41607:CDS |
| AGTTTATACTTCCTCAAAGC+GGG | 0.504195 | 3.4:+88091261 | None:intergenic |
| GAAGCAAGTTCGATCCCTCC+AGG | 0.506162 | 3.4:-88085974 | MS.gene41607:intron |
| CCTTACTTGGTGGCTTGGAA+GGG | 0.506508 | 3.4:-88095473 | MS.gene41607:CDS |
| ACAGGCACGGGATGTTGAAA+AGG | 0.508458 | 3.4:-88088091 | MS.gene41607:intron |
| TTGAATTTGAATGTGCAGAA+TGG | 0.510121 | 3.4:-88095790 | MS.gene41607:CDS |
| CTGTTGTGTTGCTGTCATGT+TGG | 0.511164 | 3.4:+88093606 | None:intergenic |
| TGAGGGTGCAACGGAGGAGA+CGG | 0.516357 | 3.4:+88096780 | None:intergenic |
| CTTGATACTGCCACTTGATG+TGG | 0.517898 | 3.4:+88085438 | None:intergenic |
| GAGGATGAAAGATTTATTGG+TGG | 0.520632 | 3.4:-88095512 | MS.gene41607:CDS |
| CACCGAATTCTTCCGGCGAA+CGG | 0.521195 | 3.4:-88096610 | MS.gene41607:CDS |
| GGCTTATTATCAGTTGTCAC+GGG | 0.521352 | 3.4:+88086431 | None:intergenic |
| ACGAAACAGCTGGCAACTCT+GGG | 0.522632 | 3.4:-88087249 | MS.gene41607:CDS |
| GGTAGCTCCTTCCCCTTCAA+AGG | 0.523827 | 3.4:+88095833 | None:intergenic |
| ATTGGAAAGAATCACAAATG+AGG | 0.524767 | 3.4:-88086489 | MS.gene41607:CDS |
| CGACGTTGGCAATATCAGTC+AGG | 0.527670 | 3.4:-88087204 | MS.gene41607:intron |
| GGCACTGGAAGCTGCTCAGA+TGG | 0.529041 | 3.4:-88086552 | MS.gene41607:CDS |
| GGATGCCAGTTCCCATTAAG+GGG | 0.532070 | 3.4:+88093779 | None:intergenic |
| ATGGACGAGTTGATCCTTGT+AGG | 0.532730 | 3.4:-88095249 | MS.gene41607:intron |
| CGTAATTATCTAATGGCTGA+TGG | 0.532739 | 3.4:-88095755 | MS.gene41607:CDS |
| AGGCTTATTATCAGTTGTCA+CGG | 0.533006 | 3.4:+88086430 | None:intergenic |
| CTTGAAGAACATTTGCAGAC+AGG | 0.533759 | 3.4:-88085392 | MS.gene41607:intron |
| ACAATCTTATACACTGCTAC+AGG | 0.533787 | 3.4:-88091075 | MS.gene41607:intron |
| TAAAACTAGGTCACAAGACA+TGG | 0.535077 | 3.4:-88093650 | MS.gene41607:CDS |
| TTTGCATGATGGAGAGAGCT+TGG | 0.537529 | 3.4:-88095320 | MS.gene41607:CDS |
| AGCTCAAGAGCTTGTTGATG+AGG | 0.539357 | 3.4:+88096714 | None:intergenic |
| GTTCAGCTCGATCCCGACAA+TGG | 0.539525 | 3.4:-88088045 | MS.gene41607:CDS |
| CATGTAAACACCACAACTGA+AGG | 0.541759 | 3.4:+88091293 | None:intergenic |
| AGTCAGCTGAGATGGCAGCT+GGG | 0.541850 | 3.4:-88093991 | MS.gene41607:CDS |
| TCAAATTCAACCAGAGACAA+AGG | 0.543600 | 3.4:+88095803 | None:intergenic |
| GGAAGCTGCTCAGATGGTGT+TGG | 0.546041 | 3.4:-88086546 | MS.gene41607:CDS |
| CAAATTCAACCAGAGACAAA+GGG | 0.546452 | 3.4:+88095804 | None:intergenic |
| ACAGAGACGGTGAAGGAGTG+AGG | 0.547934 | 3.4:+88096762 | None:intergenic |
| ACCAGAGACAAAGGGAATCT+CGG | 0.550699 | 3.4:+88095812 | None:intergenic |
| CAGAAAGACCAAATGACCCT+AGG | 0.550919 | 3.4:-88090915 | MS.gene41607:CDS |
| CAAGTAACATACCATAACCT+AGG | 0.552661 | 3.4:+88090898 | None:intergenic |
| CAATAGATCTGCTAGAGCTA+AGG | 0.553350 | 3.4:-88089362 | MS.gene41607:intron |
| CAGTATGTCAGATGTTTCAG+AGG | 0.556453 | 3.4:+88093708 | None:intergenic |
| TGTAATTGCAGGCCTTTGAA+GGG | 0.557883 | 3.4:-88095845 | MS.gene41607:intron |
| ACTCGATGTTTCCAGATGGT+TGG | 0.558482 | 3.4:-88088623 | MS.gene41607:CDS |
| GCAGCAATTCAAGATTAAGC+TGG | 0.561054 | 3.4:+88096633 | None:intergenic |
| AGCATCTTTAGAACTTTGCA+GGG | 0.561958 | 3.4:-88085476 | MS.gene41607:CDS |
| ACACAAGTTCGTCAAACAGT+GGG | 0.563604 | 3.4:-88093810 | MS.gene41607:CDS |
| AACATCAAGAGCAAGTATCT+GGG | 0.564435 | 3.4:-88086370 | MS.gene41607:CDS |
| ATGCTGATGATTCTAAAACT+AGG | 0.564723 | 3.4:-88093663 | MS.gene41607:CDS |
| GCACAGTTGAACAGACTCGC+AGG | 0.565460 | 3.4:-88096532 | MS.gene41607:CDS |
| GCCCGCAGTGCATACAATAG+AGG | 0.566492 | 3.4:-88088838 | MS.gene41607:CDS |
| TTGCAGGCCTTTGAAGGGGA+AGG | 0.568013 | 3.4:-88095840 | MS.gene41607:intron |
| GATGAGTTTACTGGATTGGG+AGG | 0.569371 | 3.4:+88096658 | None:intergenic |
| TGCCAGTTCCCATTAAGGGG+TGG | 0.574271 | 3.4:+88093782 | None:intergenic |
| GGAGACGGAGCTCGTAGCGA+CGG | 0.575182 | 3.4:+88096795 | None:intergenic |
| GAAAGAATTCCCTTCAGTTG+TGG | 0.580344 | 3.4:-88091303 | MS.gene41607:CDS |
| CGTAGCGACGGATTCCGGTA+AGG | 0.585651 | 3.4:+88096807 | None:intergenic |
| TTACTCAATGTAATTTCACT+GGG | 0.589203 | 3.4:-88096466 | MS.gene41607:intron |
| CTCAGCGCGATCCACCAACT+CGG | 0.592593 | 3.4:+88096580 | None:intergenic |
| TCCAGCCTCTAAATGAAGCA+AGG | 0.594886 | 3.4:+88095288 | None:intergenic |
| CTCTTGAGCTCAATTGAGTG+TGG | 0.595086 | 3.4:-88096701 | MS.gene41607:CDS |
| CAGAGACGGTGAAGGAGTGA+GGG | 0.598470 | 3.4:+88096763 | None:intergenic |
| TGCCAACGTCGACTGCGACA+TGG | 0.600345 | 3.4:+88087216 | None:intergenic |
| CTCGGAGTAGAACCGTTCGC+CGG | 0.600520 | 3.4:+88096598 | None:intergenic |
| GTGAAGGAGTGAGGGTGCAA+CGG | 0.601666 | 3.4:+88096771 | None:intergenic |
| GGTGCGTTGTGGCTTGATAG+GGG | 0.602001 | 3.4:-88091134 | MS.gene41607:CDS |
| AGTCTGTTCAACTGTGCTAA+CGG | 0.603392 | 3.4:+88096538 | None:intergenic |
| GAGCTTGTTGATGAGGTCAT+CGG | 0.605219 | 3.4:+88096721 | None:intergenic |
| GGATATGGCTCCTTACATTG+AGG | 0.608735 | 3.4:-88092153 | MS.gene41607:CDS |
| TTTGAAGACAGAGACGGTGA+AGG | 0.612384 | 3.4:+88096755 | None:intergenic |
| AAGGAGTGAGGGTGCAACGG+AGG | 0.616925 | 3.4:+88096774 | None:intergenic |
| TGTTTACCTGATGTACGGTA+CGG | 0.617826 | 3.4:+88093936 | None:intergenic |
| TTTGACATAGGCTGAACCAA+AGG | 0.617857 | 3.4:-88093854 | MS.gene41607:intron |
| GGAAAGAATCACAAATGAGG+TGG | 0.620263 | 3.4:-88086486 | MS.gene41607:CDS |
| CGAACGGTTCTACTCCGAGT+TGG | 0.620664 | 3.4:-88096594 | MS.gene41607:CDS |
| CTTGTTGATGAGGTCATCGG+AGG | 0.624211 | 3.4:+88096724 | None:intergenic |
| ATTATTGGTAATGTCACCCA+AGG | 0.625719 | 3.4:+88089420 | None:intergenic |
| ATGGAAATATCCACATCAAG+TGG | 0.626161 | 3.4:-88085448 | MS.gene41607:CDS |
| GTCGTTGCGTAGTCGAACAA+AGG | 0.630907 | 3.4:-88091903 | MS.gene41607:CDS |
| GCTTCAGCTTTCAGTTACTG+GGG | 0.631881 | 3.4:-88093969 | MS.gene41607:CDS |
| AAGTAACATACCATAACCTA+GGG | 0.632429 | 3.4:+88090899 | None:intergenic |
| TTTGTAACAGACGAAACAGC+TGG | 0.632458 | 3.4:-88087259 | MS.gene41607:intron |
| GTAATTGCAGGCCTTTGAAG+GGG | 0.637937 | 3.4:-88095844 | MS.gene41607:intron |
| ATGTAAACACCACAACTGAA+GGG | 0.638438 | 3.4:+88091294 | None:intergenic |
| TCCATGAGAACTGACCTACA+AGG | 0.638492 | 3.4:+88095235 | None:intergenic |
| TCACAAATGAGGTGGAAAAG+CGG | 0.643464 | 3.4:-88086478 | MS.gene41607:CDS |
| TCGGAATTTGAAGACAGAGA+CGG | 0.646781 | 3.4:+88096749 | None:intergenic |
| AACACAAGTTCGTCAAACAG+TGG | 0.646857 | 3.4:-88093811 | MS.gene41607:CDS |
| ATGAACTCGATGTTTCCAGA+TGG | 0.649368 | 3.4:-88088627 | MS.gene41607:CDS |
| AATGAAGTAAGAGAAATGCT+GGG | 0.649603 | 3.4:+88092121 | None:intergenic |
| TTATTATCAGTTGTCACGGG+AGG | 0.651094 | 3.4:+88086434 | None:intergenic |
| TTTCAATTTCAGAGAGTACG+GGG | 0.651650 | 3.4:-88091164 | MS.gene41607:intron |
| TAAATGAAGCAAGGAAACGA+TGG | 0.652563 | 3.4:+88095297 | None:intergenic |
| AGCCATGTCGCAGTCGACGT+TGG | 0.652653 | 3.4:-88087218 | MS.gene41607:CDS |
| GGGCTTCAGAACACATCATG+AGG | 0.653743 | 3.4:+88086001 | None:intergenic |
| CTCCTCTATTGTATGCACTG+CGG | 0.656732 | 3.4:+88088836 | None:intergenic |
| CACAGTTGAACAGACTCGCA+GGG | 0.662195 | 3.4:-88096531 | MS.gene41607:CDS |
| GATGCAAATTATTTCCACCA+TGG | 0.670996 | 3.4:+88093740 | None:intergenic |
| AAGTTTATACTTCCTCAAAG+CGG | 0.675338 | 3.4:+88091260 | None:intergenic |
| CTGTTCAACTGTGCTAACGG+TGG | 0.675453 | 3.4:+88096541 | None:intergenic |
| CCTTAAGGGACATACCTGGA+GGG | 0.679981 | 3.4:+88085960 | None:intergenic |
| GCGTTGTGGCTTGATAGGGG+AGG | 0.687638 | 3.4:-88091131 | MS.gene41607:CDS |
| GGATATGGACCTGAAATCTG+GGG | 0.697079 | 3.4:-88086057 | MS.gene41607:CDS |
| ACATGTGATGACAGCCATGG+TGG | 0.702452 | 3.4:-88093754 | MS.gene41607:CDS |
| CGTTCGCCGGAAGAATTCGG+TGG | 0.705957 | 3.4:+88096611 | None:intergenic |
| CACAAGTTCGTCAAACAGTG+GGG | 0.711939 | 3.4:-88093809 | MS.gene41607:CDS |
| TCAGCTCGATCCCGACAATG+GGG | 0.723688 | 3.4:-88088043 | MS.gene41607:CDS |
| GTTCTTCAAGTGCATCTCAG+CGG | 0.733559 | 3.4:+88085405 | None:intergenic |
| CAAACATGTGATGACAGCCA+TGG | 0.752317 | 3.4:-88093757 | MS.gene41607:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 88085204 | 88096852 | 88085204 | ID=MS.gene41607 |
| chr3.4 | mRNA | 88085204 | 88096852 | 88085204 | ID=MS.gene41607.t1;Parent=MS.gene41607 |
| chr3.4 | exon | 88096467 | 88096852 | 88096467 | ID=MS.gene41607.t1.exon1;Parent=MS.gene41607.t1 |
| chr3.4 | CDS | 88096467 | 88096852 | 88096467 | ID=cds.MS.gene41607.t1;Parent=MS.gene41607.t1 |
| chr3.4 | exon | 88095721 | 88095856 | 88095721 | ID=MS.gene41607.t1.exon2;Parent=MS.gene41607.t1 |
| chr3.4 | CDS | 88095721 | 88095856 | 88095721 | ID=cds.MS.gene41607.t1;Parent=MS.gene41607.t1 |
| chr3.4 | exon | 88095250 | 88095563 | 88095250 | ID=MS.gene41607.t1.exon3;Parent=MS.gene41607.t1 |
| chr3.4 | CDS | 88095250 | 88095563 | 88095250 | ID=cds.MS.gene41607.t1;Parent=MS.gene41607.t1 |
| chr3.4 | exon | 88093943 | 88094024 | 88093943 | ID=MS.gene41607.t1.exon4;Parent=MS.gene41607.t1 |
| chr3.4 | CDS | 88093943 | 88094024 | 88093943 | ID=cds.MS.gene41607.t1;Parent=MS.gene41607.t1 |
| chr3.4 | exon | 88093545 | 88093866 | 88093545 | ID=MS.gene41607.t1.exon5;Parent=MS.gene41607.t1 |
| chr3.4 | CDS | 88093545 | 88093866 | 88093545 | ID=cds.MS.gene41607.t1;Parent=MS.gene41607.t1 |
| chr3.4 | exon | 88092121 | 88092179 | 88092121 | ID=MS.gene41607.t1.exon6;Parent=MS.gene41607.t1 |
| chr3.4 | CDS | 88092121 | 88092179 | 88092121 | ID=cds.MS.gene41607.t1;Parent=MS.gene41607.t1 |
| chr3.4 | exon | 88091874 | 88091963 | 88091874 | ID=MS.gene41607.t1.exon7;Parent=MS.gene41607.t1 |
| chr3.4 | CDS | 88091874 | 88091963 | 88091874 | ID=cds.MS.gene41607.t1;Parent=MS.gene41607.t1 |
| chr3.4 | exon | 88091270 | 88091361 | 88091270 | ID=MS.gene41607.t1.exon8;Parent=MS.gene41607.t1 |
| chr3.4 | CDS | 88091270 | 88091361 | 88091270 | ID=cds.MS.gene41607.t1;Parent=MS.gene41607.t1 |
| chr3.4 | exon | 88091076 | 88091174 | 88091076 | ID=MS.gene41607.t1.exon9;Parent=MS.gene41607.t1 |
| chr3.4 | CDS | 88091076 | 88091174 | 88091076 | ID=cds.MS.gene41607.t1;Parent=MS.gene41607.t1 |
| chr3.4 | exon | 88090910 | 88090987 | 88090910 | ID=MS.gene41607.t1.exon10;Parent=MS.gene41607.t1 |
| chr3.4 | CDS | 88090910 | 88090987 | 88090910 | ID=cds.MS.gene41607.t1;Parent=MS.gene41607.t1 |
| chr3.4 | exon | 88089363 | 88089447 | 88089363 | ID=MS.gene41607.t1.exon11;Parent=MS.gene41607.t1 |
| chr3.4 | CDS | 88089363 | 88089447 | 88089363 | ID=cds.MS.gene41607.t1;Parent=MS.gene41607.t1 |
| chr3.4 | exon | 88088811 | 88088869 | 88088811 | ID=MS.gene41607.t1.exon12;Parent=MS.gene41607.t1 |
| chr3.4 | CDS | 88088811 | 88088869 | 88088811 | ID=cds.MS.gene41607.t1;Parent=MS.gene41607.t1 |
| chr3.4 | exon | 88088596 | 88088665 | 88088596 | ID=MS.gene41607.t1.exon13;Parent=MS.gene41607.t1 |
| chr3.4 | CDS | 88088596 | 88088665 | 88088596 | ID=cds.MS.gene41607.t1;Parent=MS.gene41607.t1 |
| chr3.4 | exon | 88088018 | 88088109 | 88088018 | ID=MS.gene41607.t1.exon14;Parent=MS.gene41607.t1 |
| chr3.4 | CDS | 88088018 | 88088109 | 88088018 | ID=cds.MS.gene41607.t1;Parent=MS.gene41607.t1 |
| chr3.4 | exon | 88087438 | 88087500 | 88087438 | ID=MS.gene41607.t1.exon15;Parent=MS.gene41607.t1 |
| chr3.4 | CDS | 88087438 | 88087500 | 88087438 | ID=cds.MS.gene41607.t1;Parent=MS.gene41607.t1 |
| chr3.4 | exon | 88087205 | 88087271 | 88087205 | ID=MS.gene41607.t1.exon16;Parent=MS.gene41607.t1 |
| chr3.4 | CDS | 88087205 | 88087271 | 88087205 | ID=cds.MS.gene41607.t1;Parent=MS.gene41607.t1 |
| chr3.4 | exon | 88086316 | 88086573 | 88086316 | ID=MS.gene41607.t1.exon17;Parent=MS.gene41607.t1 |
| chr3.4 | CDS | 88086316 | 88086573 | 88086316 | ID=cds.MS.gene41607.t1;Parent=MS.gene41607.t1 |
| chr3.4 | exon | 88085975 | 88086097 | 88085975 | ID=MS.gene41607.t1.exon18;Parent=MS.gene41607.t1 |
| chr3.4 | CDS | 88085975 | 88086097 | 88085975 | ID=cds.MS.gene41607.t1;Parent=MS.gene41607.t1 |
| chr3.4 | exon | 88085393 | 88085545 | 88085393 | ID=MS.gene41607.t1.exon19;Parent=MS.gene41607.t1 |
| chr3.4 | CDS | 88085393 | 88085545 | 88085393 | ID=cds.MS.gene41607.t1;Parent=MS.gene41607.t1 |
| chr3.4 | exon | 88085204 | 88085299 | 88085204 | ID=MS.gene41607.t1.exon20;Parent=MS.gene41607.t1 |
| chr3.4 | CDS | 88085204 | 88085299 | 88085204 | ID=cds.MS.gene41607.t1;Parent=MS.gene41607.t1 |
| Gene Sequence |
| Protein sequence |
