Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41629.t1 | XP_003602731.1 | 98.9 | 541 | 6 | 0 | 1 | 541 | 1 | 541 | 4.70E-218 | 767.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41629.t1 | O82709 | 82.9 | 508 | 73 | 4 | 1 | 496 | 1 | 506 | 1.7e-168 | 594.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41629.t1 | G7J2R7 | 98.9 | 541 | 6 | 0 | 1 | 541 | 1 | 541 | 3.4e-218 | 767.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049179 | MS.gene41629 | 0.936341 | 2.03E-97 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene82400 | MS.gene41629 | PPI |
| MS.gene56457 | MS.gene41629 | PPI |
| MS.gene001347 | MS.gene41629 | PPI |
| MS.gene006869 | MS.gene41629 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41629.t1 | MTR_3g098430 | 98.336 | 541 | 9 | 0 | 1 | 541 | 1 | 541 | 0.0 | 1074 |
| MS.gene41629.t1 | MTR_3g098430 | 97.436 | 546 | 9 | 1 | 1 | 541 | 1 | 546 | 0.0 | 1069 |
| MS.gene41629.t1 | MTR_8g095680 | 77.091 | 550 | 107 | 6 | 1 | 541 | 1 | 540 | 0.0 | 792 |
| MS.gene41629.t1 | MTR_4g068080 | 33.995 | 403 | 198 | 13 | 8 | 402 | 8 | 350 | 1.17e-58 | 201 |
| MS.gene41629.t1 | MTR_1g083960 | 38.421 | 380 | 175 | 11 | 33 | 405 | 26 | 353 | 3.96e-58 | 199 |
| MS.gene41629.t1 | MTR_7g080370 | 34.230 | 409 | 196 | 14 | 1 | 398 | 1 | 347 | 5.93e-57 | 196 |
| MS.gene41629.t1 | MTR_7g080370 | 34.230 | 409 | 196 | 14 | 1 | 398 | 1 | 347 | 1.38e-56 | 195 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41629.t1 | AT5G61790 | 74.765 | 531 | 127 | 3 | 11 | 541 | 7 | 530 | 0.0 | 798 |
| MS.gene41629.t1 | AT5G07340 | 74.951 | 511 | 118 | 3 | 31 | 539 | 27 | 529 | 0.0 | 768 |
| MS.gene41629.t1 | AT5G07340 | 75.197 | 508 | 116 | 3 | 34 | 539 | 38 | 537 | 0.0 | 766 |
| MS.gene41629.t1 | AT1G56340 | 38.702 | 416 | 189 | 14 | 5 | 413 | 3 | 359 | 1.07e-61 | 209 |
| MS.gene41629.t1 | AT1G56340 | 38.702 | 416 | 189 | 14 | 5 | 413 | 3 | 359 | 2.78e-61 | 208 |
| MS.gene41629.t1 | AT1G09210 | 38.861 | 404 | 183 | 13 | 9 | 405 | 5 | 351 | 8.63e-59 | 201 |
| MS.gene41629.t1 | AT1G08450 | 33.333 | 429 | 217 | 13 | 11 | 423 | 8 | 383 | 1.12e-56 | 196 |
| MS.gene41629.t1 | AT1G08450 | 30.023 | 433 | 201 | 13 | 11 | 423 | 8 | 358 | 5.48e-43 | 158 |
| MS.gene41629.t1 | AT1G08450 | 34.454 | 238 | 106 | 6 | 194 | 423 | 134 | 329 | 1.66e-25 | 108 |
Find 182 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCTGGCTTTACAGCTTC+TGG | 0.065396 | 3.4:+88324747 | None:intergenic |
| TTACAATAATCTTATCTTTC+TGG | 0.129339 | 3.4:+88324036 | None:intergenic |
| CTGCCATTGGTATTGAAATT+TGG | 0.163969 | 3.4:-88324377 | MS.gene41629:CDS |
| CATTGATAACCCAGCTTATA+AGG | 0.184554 | 3.4:-88324472 | MS.gene41629:CDS |
| AGTGAGGGGCACGATGATTT+TGG | 0.222943 | 3.4:-88325296 | MS.gene41629:CDS |
| GAAAAGGAACCCAGCTTATA+AGG | 0.242385 | 3.4:-88324514 | MS.gene41629:CDS |
| TCAACATACTTTCCAGTCTT+TGG | 0.247163 | 3.4:+88325002 | None:intergenic |
| TGGGTTTCCAACCACTCTCC+TGG | 0.263681 | 3.4:+88325120 | None:intergenic |
| CTCTTTCTCAATGTTAAACT+TGG | 0.276239 | 3.4:+88324266 | None:intergenic |
| GCTCTCTCGTCCCAGTCTTC+TGG | 0.293148 | 3.4:+88324783 | None:intergenic |
| TTCGTCAAGTTCTTTAACTA+TGG | 0.306137 | 3.4:+88325241 | None:intergenic |
| AGAATTCTCACCTCATTATC+AGG | 0.319935 | 3.4:+88324909 | None:intergenic |
| TTTGTTGCCCCGCACCTGTC+TGG | 0.320390 | 3.4:+88325056 | None:intergenic |
| CTCCACTTTCCCTTATAAGC+TGG | 0.323256 | 3.4:+88324504 | None:intergenic |
| ACCCAGCTTATAAGGGTATA+TGG | 0.329615 | 3.4:-88324464 | MS.gene41629:CDS |
| AGCTTCTGGGTCAGGAATCT+TGG | 0.330240 | 3.4:+88324761 | None:intergenic |
| AGAATTCCAATAGTCAGATT+TGG | 0.331821 | 3.4:+88323881 | None:intergenic |
| CAGGGGCTGATTCACACTTT+GGG | 0.332470 | 3.4:+88324562 | None:intergenic |
| GGCTTTACAGCTTCTGGGTC+AGG | 0.336142 | 3.4:+88324753 | None:intergenic |
| TCGTCATCCAACCATTCTTC+AGG | 0.338310 | 3.4:+88324675 | None:intergenic |
| TTCATTCTCTCCACCAGCTT+GGG | 0.340196 | 3.4:+88323643 | None:intergenic |
| ACCTTTCAATTGTCTCGCTT+TGG | 0.350249 | 3.4:+88323575 | None:intergenic |
| CCTCTGGCTTTACAGCTTCT+GGG | 0.362016 | 3.4:+88324748 | None:intergenic |
| ACTATGGCGTACTTCCTTGC+TGG | 0.364602 | 3.4:+88325257 | None:intergenic |
| AGTTCAAAGTACTCTGGGTT+TGG | 0.371725 | 3.4:+88324426 | None:intergenic |
| GGACCAAACATGACAGAATA+TGG | 0.377257 | 3.4:+88325077 | None:intergenic |
| CTCTTCCACTCACCACAGCC+AGG | 0.377474 | 3.4:+88324543 | None:intergenic |
| TCTTCTGGTTTGTTATCATC+AGG | 0.380136 | 3.4:+88324798 | None:intergenic |
| CCAGGGGCTGATTCACACTT+TGG | 0.380770 | 3.4:+88324561 | None:intergenic |
| AAGCAACCAAATCTGACTAT+TGG | 0.383408 | 3.4:-88323887 | MS.gene41629:CDS |
| GGGTTTCCAACCACTCTCCT+GGG | 0.383983 | 3.4:+88325121 | None:intergenic |
| CTTCATTCTCTCCACCAGCT+TGG | 0.390458 | 3.4:+88323642 | None:intergenic |
| TCTCCATATTCTGTCATGTT+TGG | 0.391928 | 3.4:-88325080 | MS.gene41629:CDS |
| TGACGAACCTGTCATTCTTA+AGG | 0.393509 | 3.4:-88325225 | MS.gene41629:CDS |
| GGTTTGTTATCATCAGGATC+AGG | 0.396865 | 3.4:+88324804 | None:intergenic |
| GCTGAGTCCGAGGGTATTGC+TGG | 0.398364 | 3.4:-88324216 | MS.gene41629:CDS |
| TTCTCAAGTTCAAAGTACTC+TGG | 0.413427 | 3.4:+88324420 | None:intergenic |
| TTCCATATACCCTTATAAGC+TGG | 0.413553 | 3.4:+88324462 | None:intergenic |
| GGCAACAAAACCTGAGGATT+GGG | 0.417078 | 3.4:-88324628 | MS.gene41629:CDS |
| TCCACTTTCCCTTATAAGCT+GGG | 0.417460 | 3.4:+88324505 | None:intergenic |
| AGCTGTAAAGCCAGAGGACT+GGG | 0.421453 | 3.4:-88324742 | MS.gene41629:CDS |
| CTGGCTGTGGTGAGTGGAAG+AGG | 0.424277 | 3.4:-88324542 | MS.gene41629:CDS |
| TCAATACCAATGGCAGCAAT+AGG | 0.424596 | 3.4:+88324384 | None:intergenic |
| TGACGGCGAGGAGAAGAAAA+AGG | 0.425936 | 3.4:-88324883 | MS.gene41629:CDS |
| TGATGAGGAGGATGGTGAAT+GGG | 0.428154 | 3.4:-88324604 | MS.gene41629:CDS |
| ACAAGGTGCACTTCATCTTC+AGG | 0.433871 | 3.4:-88325034 | MS.gene41629:CDS |
| TGTTTGGTCCAGACAGGTGC+GGG | 0.435806 | 3.4:-88325064 | MS.gene41629:CDS |
| TCTTATCTTTCTGGCCACTT+AGG | 0.437920 | 3.4:+88324045 | None:intergenic |
| CTCATTATCAGGCTTTAGAA+TGG | 0.437946 | 3.4:+88324920 | None:intergenic |
| TACCGCATCGTCAGCTTCAT+CGG | 0.439150 | 3.4:+88326424 | None:intergenic |
| TCTGCAGGAAATCATTGAAA+AGG | 0.446463 | 3.4:-88323915 | MS.gene41629:intron |
| ATGATGAGGAGGATGGTGAA+TGG | 0.451613 | 3.4:-88324605 | MS.gene41629:CDS |
| CTGTCATGTTTGGTCCAGAC+AGG | 0.452777 | 3.4:-88325070 | MS.gene41629:CDS |
| CTGCAGGAAATCATTGAAAA+GGG | 0.453156 | 3.4:-88323914 | MS.gene41629:intron |
| TTTGAGCCTATTGCTGCCAT+TGG | 0.460151 | 3.4:-88324390 | MS.gene41629:CDS |
| ATCTTTCTGGCCACTTAGGA+AGG | 0.460977 | 3.4:+88324049 | None:intergenic |
| TCCATATACCCTTATAAGCT+GGG | 0.462245 | 3.4:+88324463 | None:intergenic |
| GAATGAAGACAACAAAGAAA+AGG | 0.463345 | 3.4:-88323627 | MS.gene41629:CDS |
| CTGGGATGAGGATGCACCTA+TGG | 0.465153 | 3.4:-88324724 | MS.gene41629:CDS |
| AGTTTCTGTGCGTTCTGTGT+TGG | 0.466104 | 3.4:+88323667 | None:intergenic |
| TCTCAAGTTCAAAGTACTCT+GGG | 0.467035 | 3.4:+88324421 | None:intergenic |
| AAAAGGAACCCAGCTTATAA+GGG | 0.467436 | 3.4:-88324513 | MS.gene41629:CDS |
| ATAAGCTGGGTTATCAATGT+AGG | 0.471071 | 3.4:+88324476 | None:intergenic |
| TCTGGGTCATCTATTTCCTC+TGG | 0.474079 | 3.4:+88324651 | None:intergenic |
| AAGAGGAAGCAATGAAGAAA+AGG | 0.475362 | 3.4:+88326462 | None:intergenic |
| TCTTCCACTCACCACAGCCA+GGG | 0.476497 | 3.4:+88324544 | None:intergenic |
| GCATCCTCATCCCAGTCCTC+TGG | 0.476556 | 3.4:+88324732 | None:intergenic |
| TCCTCATCATCCCAATCCTC+AGG | 0.477110 | 3.4:+88324618 | None:intergenic |
| GATTCGTTGTCAAATCCCTT+GGG | 0.478126 | 3.4:+88325101 | None:intergenic |
| AGATTCGTTGTCAAATCCCT+TGG | 0.479561 | 3.4:+88325100 | None:intergenic |
| AGGCAACAAAACCTGAGGAT+TGG | 0.480179 | 3.4:-88324629 | MS.gene41629:CDS |
| TCTTTCTCAATGTTAAACTT+GGG | 0.480481 | 3.4:+88324267 | None:intergenic |
| TGGCCTCCTACGTGGAGCAT+TGG | 0.487308 | 3.4:+88323595 | None:intergenic |
| TATATGCACCACCACATTCA+AGG | 0.490647 | 3.4:+88325159 | None:intergenic |
| TGATAATATTCTTATAGCTA+AGG | 0.491075 | 3.4:-88324331 | MS.gene41629:CDS |
| AAGCTGTAAAGCCAGAGGAC+TGG | 0.491241 | 3.4:-88324743 | MS.gene41629:CDS |
| ATTGATAACCCAGCTTATAA+GGG | 0.496616 | 3.4:-88324471 | MS.gene41629:CDS |
| ATGATAACAAACCAGAAGAC+TGG | 0.496997 | 3.4:-88324794 | MS.gene41629:CDS |
| CCGTTGGATTGTATCTGAAA+AGG | 0.499726 | 3.4:-88326290 | MS.gene41629:CDS |
| CGAGGGTATTGCTGGCTACC+AGG | 0.502715 | 3.4:-88324208 | MS.gene41629:intron |
| TATTGAAATTTGGACAATGC+AGG | 0.503304 | 3.4:-88324367 | MS.gene41629:CDS |
| TAAGCTGGGTTATCAATGTA+GGG | 0.504397 | 3.4:+88324477 | None:intergenic |
| TCTTCTGCAGGCTAAGGTGG+AGG | 0.505920 | 3.4:-88323708 | MS.gene41629:intron |
| AATCCTATCGTGAAACTACA+TGG | 0.508933 | 3.4:-88324293 | MS.gene41629:CDS |
| GCTCAAAATCCTCCTCGGAC+AGG | 0.517116 | 3.4:+88324853 | None:intergenic |
| ATAAGGGTATATGGAAGCCT+CGG | 0.523060 | 3.4:-88324455 | MS.gene41629:CDS |
| AGGAGCACCGCGATAGCGAT+AGG | 0.523693 | 3.4:+88326482 | None:intergenic |
| CAGCCCCTGGCTGTGGTGAG+TGG | 0.526056 | 3.4:-88324548 | MS.gene41629:CDS |
| TTTCCATGTAGTTTCACGAT+AGG | 0.527990 | 3.4:+88324290 | None:intergenic |
| AAGCTGAGAAACCTGAAGAA+TGG | 0.528750 | 3.4:-88324686 | MS.gene41629:CDS |
| TTCAACCCCAGGAGAGTGGT+TGG | 0.532251 | 3.4:-88325127 | MS.gene41629:CDS |
| GGAGGCAGCAGCTGAGTCCG+AGG | 0.532327 | 3.4:-88324226 | MS.gene41629:CDS |
| GTTTGTTATCATCAGGATCA+GGG | 0.534077 | 3.4:+88324805 | None:intergenic |
| AGAGAAACAGAAGGCTGAAG+AGG | 0.535396 | 3.4:-88324247 | MS.gene41629:CDS |
| GATCCATCCTTAAGAATGAC+AGG | 0.536585 | 3.4:+88325218 | None:intergenic |
| ATCAGGATCAGGGATTGTCT+TGG | 0.536695 | 3.4:+88324815 | None:intergenic |
| TGTCCAAATTTCAATACCAA+TGG | 0.537978 | 3.4:+88324374 | None:intergenic |
| TAAGGGTATATGGAAGCCTC+GGG | 0.538372 | 3.4:-88324454 | MS.gene41629:CDS |
| ACCCAGCTTATAAGGGAAAG+TGG | 0.538755 | 3.4:-88324506 | MS.gene41629:CDS |
| CATTCTAAAGCCTGATAATG+AGG | 0.539931 | 3.4:-88324919 | MS.gene41629:CDS |
| TCTTCATCAATAATTTCCAT+AGG | 0.540356 | 3.4:+88324708 | None:intergenic |
| ACCTGAGGATTGGGATGATG+AGG | 0.540446 | 3.4:-88324619 | MS.gene41629:CDS |
| CTTCCACTCACCACAGCCAG+GGG | 0.542397 | 3.4:+88324545 | None:intergenic |
| TTTGAGACTCGCCTTCAGAA+TGG | 0.542633 | 3.4:-88325182 | MS.gene41629:CDS |
| GCAGCAATAGGCTCAAAGTC+AGG | 0.545429 | 3.4:+88324396 | None:intergenic |
| CGCACAGAAACTTCCCAAGC+TGG | 0.545555 | 3.4:-88323656 | MS.gene41629:CDS |
| GAAACAGAAGGCTGAAGAGG+AGG | 0.547348 | 3.4:-88324244 | MS.gene41629:CDS |
| AGTTTGTCAGATGGGACAGA+AGG | 0.547484 | 3.4:+88324960 | None:intergenic |
| CATGAGATAGTTTGTCAGAT+GGG | 0.548220 | 3.4:+88324952 | None:intergenic |
| GTTTGTCAGATGGGACAGAA+GGG | 0.550204 | 3.4:+88324961 | None:intergenic |
| CCAAAGTGTGAATCAGCCCC+TGG | 0.551044 | 3.4:-88324561 | MS.gene41629:CDS |
| TTGTCAGATGGGACAGAAGG+GGG | 0.552914 | 3.4:+88324963 | None:intergenic |
| GCAGGCTAAGGTGGAGGCGA+AGG | 0.553851 | 3.4:-88323702 | MS.gene41629:intron |
| AGTGGAAGAGGCCAACGAAA+AGG | 0.554259 | 3.4:-88324530 | MS.gene41629:CDS |
| GGTTTCCAACCACTCTCCTG+GGG | 0.554990 | 3.4:+88325122 | None:intergenic |
| ATTAGCAATGGTGGAACGAA+AGG | 0.558203 | 3.4:-88326510 | None:intergenic |
| CACATTCAAGGCCATTCTGA+AGG | 0.558745 | 3.4:+88325171 | None:intergenic |
| CAGGTGCGGGGCAACAAACA+AGG | 0.564763 | 3.4:-88325051 | MS.gene41629:CDS |
| AAAGCCAGAGGACTGGGATG+AGG | 0.564770 | 3.4:-88324736 | MS.gene41629:CDS |
| GGAGCACCGCGATAGCGATA+GGG | 0.567430 | 3.4:+88326483 | None:intergenic |
| ATGTTTGGTCCAGACAGGTG+CGG | 0.569118 | 3.4:-88325065 | MS.gene41629:CDS |
| GGATCAGGGATTGTCTTGGA+AGG | 0.571851 | 3.4:+88324819 | None:intergenic |
| TCTTTCTGGCCACTTAGGAA+GGG | 0.574034 | 3.4:+88324050 | None:intergenic |
| GATTGGGATGATGAGGAGGA+TGG | 0.574150 | 3.4:-88324612 | MS.gene41629:CDS |
| TGTGAATCAGCCCCTGGCTG+TGG | 0.575974 | 3.4:-88324555 | MS.gene41629:CDS |
| GAGGTGAGAATTCTAGTTGA+CGG | 0.579771 | 3.4:-88324900 | MS.gene41629:CDS |
| CAGCCAATGCTCCACGTAGG+AGG | 0.580449 | 3.4:-88323598 | MS.gene41629:CDS |
| TCTTTAGGCTCATATTCGGC+GGG | 0.582978 | 3.4:-88323826 | MS.gene41629:CDS |
| TTCTTTAGGCTCATATTCGG+CGG | 0.583806 | 3.4:-88323827 | MS.gene41629:CDS |
| TGGAAGCATTCTAAGAGTGA+GGG | 0.585471 | 3.4:-88325311 | MS.gene41629:CDS |
| GGAAGCGTGAACGAAGGAAG+AGG | 0.587228 | 3.4:+88326445 | None:intergenic |
| CTGGAAGCATTCTAAGAGTG+AGG | 0.587589 | 3.4:-88325312 | MS.gene41629:CDS |
| GGAGAGTGGTTGGAAACCCA+AGG | 0.591216 | 3.4:-88325117 | MS.gene41629:CDS |
| TGAGAAACCTGAAGAATGGT+TGG | 0.592154 | 3.4:-88324682 | MS.gene41629:CDS |
| GCAGACATTCCCTTCCTAAG+TGG | 0.593740 | 3.4:-88324059 | MS.gene41629:CDS |
| GAACCTGTCATTCTTAAGGA+TGG | 0.594415 | 3.4:-88325221 | MS.gene41629:CDS |
| AGAAGGCTCAAAATCCTCCT+CGG | 0.597536 | 3.4:+88324848 | None:intergenic |
| TATTAAATATCTTCAACCCC+AGG | 0.601083 | 3.4:-88325138 | MS.gene41629:CDS |
| TCTGGGTTTGGAATCTCCCG+AGG | 0.605370 | 3.4:+88324438 | None:intergenic |
| ACATGAGATAGTTTGTCAGA+TGG | 0.606072 | 3.4:+88324951 | None:intergenic |
| TCTCGCTTTGGCCTCCTACG+TGG | 0.607453 | 3.4:+88323587 | None:intergenic |
| GTCTTGGAAGGGATAAGAGA+AGG | 0.612453 | 3.4:+88324831 | None:intergenic |
| GAGGCAGCAGCTGAGTCCGA+GGG | 0.612757 | 3.4:-88324225 | MS.gene41629:CDS |
| CTTCAGAATGGCCTTGAATG+TGG | 0.614341 | 3.4:-88325170 | MS.gene41629:CDS |
| TATCTTCAACCCCAGGAGAG+TGG | 0.614389 | 3.4:-88325131 | MS.gene41629:CDS |
| TTTGTCAGATGGGACAGAAG+GGG | 0.617670 | 3.4:+88324962 | None:intergenic |
| TGGAATTCTTGCATCCGTTG+TGG | 0.618008 | 3.4:-88323867 | MS.gene41629:CDS |
| TGTCTGCGATCTTGTACAAG+AGG | 0.619339 | 3.4:+88324075 | None:intergenic |
| TTCTTGTTAGTGAACCAGCA+AGG | 0.619414 | 3.4:-88325271 | MS.gene41629:CDS |
| GAGCACCGCGATAGCGATAG+GGG | 0.620301 | 3.4:+88326484 | None:intergenic |
| TGCAGGAAATCATTGAAAAG+GGG | 0.624295 | 3.4:-88323913 | MS.gene41629:intron |
| CAGAATGGCCTTGAATGTGG+TGG | 0.626980 | 3.4:-88325167 | MS.gene41629:CDS |
| GCAGGAAATCATTGAAAAGG+GGG | 0.627203 | 3.4:-88323912 | MS.gene41629:intron |
| GAAGGCGAGTCTCAAACTGA+AGG | 0.630110 | 3.4:+88325189 | None:intergenic |
| TGTCAGATGGGACAGAAGGG+GGG | 0.631248 | 3.4:+88324964 | None:intergenic |
| TTCATCGGAAGCGTGAACGA+AGG | 0.632521 | 3.4:+88326439 | None:intergenic |
| GATCAGGGATTGTCTTGGAA+GGG | 0.635602 | 3.4:+88324820 | None:intergenic |
| TGATAACAAACCAGAAGACT+GGG | 0.636071 | 3.4:-88324793 | MS.gene41629:CDS |
| TTGGATTGTATCTGAAAAGG+AGG | 0.638329 | 3.4:-88326287 | MS.gene41629:CDS |
| CTGGTAGCCAGCAATACCCT+CGG | 0.639757 | 3.4:+88324209 | None:intergenic |
| ATGGTTGGATGACGAGCCAG+AGG | 0.645028 | 3.4:-88324667 | MS.gene41629:CDS |
| GGCTAACTTCCTGTCCGAGG+AGG | 0.645087 | 3.4:-88324862 | MS.gene41629:CDS |
| GAGAATTCTAGTTGACGGCG+AGG | 0.652459 | 3.4:-88324895 | MS.gene41629:CDS |
| CTTCTACGAATCGTTCGATG+AGG | 0.652723 | 3.4:-88326323 | MS.gene41629:CDS |
| AAAGGCTAACTTCCTGTCCG+AGG | 0.652948 | 3.4:-88324865 | MS.gene41629:CDS |
| AGCTGGGTTATCAATGTAGG+GGG | 0.658344 | 3.4:+88324479 | None:intergenic |
| GGAAGCATTCTAAGAGTGAG+GGG | 0.661084 | 3.4:-88325310 | MS.gene41629:CDS |
| AAGCTGGGTTATCAATGTAG+GGG | 0.662575 | 3.4:+88324478 | None:intergenic |
| TGAGGATTGGGATGATGAGG+AGG | 0.663099 | 3.4:-88324616 | MS.gene41629:CDS |
| CATTGAGAAAGAGAAACAGA+AGG | 0.664396 | 3.4:-88324256 | MS.gene41629:CDS |
| GAAATTTGGACAATGCAGGA+CGG | 0.665071 | 3.4:-88324363 | MS.gene41629:CDS |
| ACAGAAACTTCCCAAGCTGG+TGG | 0.666572 | 3.4:-88323653 | MS.gene41629:CDS |
| GAGAGTGGTTGGAAACCCAA+GGG | 0.671705 | 3.4:-88325116 | MS.gene41629:CDS |
| TCTGAAAAGGAGGAATACAA+TGG | 0.671724 | 3.4:-88326277 | MS.gene41629:intron |
| CCCAGAAGCTGTAAAGCCAG+AGG | 0.676697 | 3.4:-88324748 | MS.gene41629:CDS |
| TTCCGATGAAGCTGACGATG+CGG | 0.679909 | 3.4:-88326426 | MS.gene41629:intron |
| CCCAGAGGCAACAAAACCTG+AGG | 0.683397 | 3.4:-88324634 | MS.gene41629:CDS |
| GGTTACCCCTATCGCTATCG+CGG | 0.684117 | 3.4:-88326489 | MS.gene41629:CDS |
| GTTTGGTCCAGACAGGTGCG+GGG | 0.694516 | 3.4:-88325063 | MS.gene41629:CDS |
| AGAGGAAATAGATGACCCAG+AGG | 0.718864 | 3.4:-88324649 | MS.gene41629:CDS |
| AAACAGCCAATGCTCCACGT+AGG | 0.734567 | 3.4:-88323601 | MS.gene41629:CDS |
| TGTCACGAAAACAACCACAA+CGG | 0.747223 | 3.4:+88323853 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATAATGAATAATG+AGG | + | chr3.4:88323696-88323715 | None:intergenic | 10.0% |
| !!! | ATTATTAATTAATTGTGTTT+TGG | - | chr3.4:88323896-88323915 | MS.gene41629:CDS | 10.0% |
| !! | ATGAAATTAAATAGAAACTA+AGG | - | chr3.4:88324484-88324503 | MS.gene41629:CDS | 15.0% |
| !! | ATTTCAAAAAATATTCCTAT+TGG | + | chr3.4:88324350-88324369 | None:intergenic | 15.0% |
| !!! | AAATATAAGAATGATTTTTG+TGG | - | chr3.4:88324366-88324385 | MS.gene41629:CDS | 15.0% |
| !!! | GATAACTTTTTAAAAGAAAT+CGG | - | chr3.4:88323942-88323961 | MS.gene41629:intron | 15.0% |
| !!! | TACATTTTGATTTTTGTTTT+GGG | - | chr3.4:88324738-88324757 | MS.gene41629:CDS | 15.0% |
| !!! | TTATTTTTTTTTGTTTGTGA+TGG | - | chr3.4:88323705-88323724 | MS.gene41629:intron | 15.0% |
| !! | AAATGTACATCAAAATTTGT+TGG | + | chr3.4:88324725-88324744 | None:intergenic | 20.0% |
| !! | AATAAAATTTCACAACTTAC+AGG | + | chr3.4:88326289-88326308 | None:intergenic | 20.0% |
| !! | TAACAGAAATAAAATGAAAG+TGG | + | chr3.4:88324530-88324549 | None:intergenic | 20.0% |
| !! | TGATAATATTCTTATAGCTA+AGG | - | chr3.4:88325752-88325771 | MS.gene41629:intron | 20.0% |
| !! | TTACAATAATCTTATCTTTC+TGG | + | chr3.4:88326050-88326069 | None:intergenic | 20.0% |
| !!! | AATTTTAAAAGGAAATCAAG+TGG | + | chr3.4:88324306-88324325 | None:intergenic | 20.0% |
| !!! | GATTTCCTTTTAAAATTACA+GGG | - | chr3.4:88324309-88324328 | MS.gene41629:CDS | 20.0% |
| !!! | GTACATTTTGATTTTTGTTT+TGG | - | chr3.4:88324737-88324756 | MS.gene41629:CDS | 20.0% |
| !!! | TGATTTCCTTTTAAAATTAC+AGG | - | chr3.4:88324308-88324327 | MS.gene41629:CDS | 20.0% |
| !!! | TTATTTCTGTTATTCATTCT+GGG | - | chr3.4:88324538-88324557 | MS.gene41629:CDS | 20.0% |
| !!! | TTTATTTCTGTTATTCATTC+TGG | - | chr3.4:88324537-88324556 | MS.gene41629:CDS | 20.0% |
| ! | AATGGTAAGTAAATTCGAAT+CGG | - | chr3.4:88323824-88323843 | MS.gene41629:CDS | 25.0% |
| ! | ACGGAATAATAATGAAAGTA+AGG | - | chr3.4:88324423-88324442 | MS.gene41629:CDS | 25.0% |
| ! | AGAAATAAAATGAAAGTGGT+TGG | + | chr3.4:88324526-88324545 | None:intergenic | 25.0% |
| ! | ATACATGTGTATAATATTGC+AGG | - | chr3.4:88324267-88324286 | MS.gene41629:CDS | 25.0% |
| ! | CTCGTTCATATTAATTTCAT+GGG | - | chr3.4:88326312-88326331 | MS.gene41629:CDS | 25.0% |
| ! | GATTTAAGTAAAACCTAATC+TGG | - | chr3.4:88324037-88324056 | MS.gene41629:intron | 25.0% |
| ! | TCGTTCATATTAATTTCATG+GGG | - | chr3.4:88326313-88326332 | MS.gene41629:CDS | 25.0% |
| ! | TCTTCATCAATAATTTCCAT+AGG | + | chr3.4:88325378-88325397 | None:intergenic | 25.0% |
| ! | TCTTTCTCAATGTTAAACTT+GGG | + | chr3.4:88325819-88325838 | None:intergenic | 25.0% |
| !! | ATTTTCTTTAGGCTCATATT+CGG | - | chr3.4:88326253-88326272 | MS.gene41629:intron | 25.0% |
| !! | GCAAGTTCAATAAATTTTGA+AGG | - | chr3.4:88324623-88324642 | MS.gene41629:CDS | 25.0% |
| !! | GTATTTTTCATTCACATTCA+TGG | - | chr3.4:88326336-88326355 | MS.gene41629:intron | 25.0% |
| !! | TATTTCTGTTATTCATTCTG+GGG | - | chr3.4:88324539-88324558 | MS.gene41629:CDS | 25.0% |
| !! | TTTAAATTTTCCTCCTCTTT+TGG | - | chr3.4:88326093-88326112 | MS.gene41629:intron | 25.0% |
| !! | TTTTCGTGACAATTTTCTTT+AGG | - | chr3.4:88326242-88326261 | MS.gene41629:intron | 25.0% |
| !!! | TCCTATTGGTTTTTATAGTT+GGG | + | chr3.4:88324336-88324355 | None:intergenic | 25.0% |
| !!! | TTCCTATTGGTTTTTATAGT+TGG | + | chr3.4:88324337-88324356 | None:intergenic | 25.0% |
| !!! | TTTTTTTACCTTACAGAAGA+AGG | - | chr3.4:88325978-88325997 | MS.gene41629:intron | 25.0% |
| AAACAAACTAACTGCTATTC+TGG | - | chr3.4:88324135-88324154 | MS.gene41629:intron | 30.0% | |
| AAGAGAGAAGATAGAGTAAA+TGG | + | chr3.4:88325915-88325934 | None:intergenic | 30.0% | |
| ACCCAACTATAAAAACCAAT+AGG | - | chr3.4:88324332-88324351 | MS.gene41629:CDS | 30.0% | |
| AGAATTCCAATAGTCAGATT+TGG | + | chr3.4:88326205-88326224 | None:intergenic | 30.0% | |
| ATAATATTGCAGGCTAGATT+TGG | - | chr3.4:88324277-88324296 | MS.gene41629:CDS | 30.0% | |
| ATCCAGTAAGTGAATCATAA+TGG | + | chr3.4:88326122-88326141 | None:intergenic | 30.0% | |
| ATCCATTATGATTCACTTAC+TGG | - | chr3.4:88326117-88326136 | MS.gene41629:intron | 30.0% | |
| ATGCATAAGAAAGAAAAGGA+AGG | + | chr3.4:88325949-88325968 | None:intergenic | 30.0% | |
| ATTATGATTCACTTACTGGA+TGG | - | chr3.4:88326121-88326140 | MS.gene41629:intron | 30.0% | |
| CATCATGCATAAGAAAGAAA+AGG | + | chr3.4:88325953-88325972 | None:intergenic | 30.0% | |
| CGTTCATATTAATTTCATGG+GGG | - | chr3.4:88326314-88326333 | MS.gene41629:CDS | 30.0% | |
| CTCTTTCTCAATGTTAAACT+TGG | + | chr3.4:88325820-88325839 | None:intergenic | 30.0% | |
| GAATGAAGACAACAAAGAAA+AGG | - | chr3.4:88326456-88326475 | MS.gene41629:CDS | 30.0% | |
| GCTCGTTCATATTAATTTCA+TGG | - | chr3.4:88326311-88326330 | MS.gene41629:CDS | 30.0% | |
| GTGAATCAATAATCCAGATT+AGG | + | chr3.4:88324053-88324072 | None:intergenic | 30.0% | |
| TATTAAATATCTTCAACCCC+AGG | - | chr3.4:88324945-88324964 | MS.gene41629:CDS | 30.0% | |
| TATTGAAATTTGGACAATGC+AGG | - | chr3.4:88325716-88325735 | MS.gene41629:intron | 30.0% | |
| TGTCCAAATTTCAATACCAA+TGG | + | chr3.4:88325712-88325731 | None:intergenic | 30.0% | |
| TTCGTCAAGTTCTTTAACTA+TGG | + | chr3.4:88324845-88324864 | None:intergenic | 30.0% | |
| ! | AAAGTAAGGATGAAAGCATA+GGG | - | chr3.4:88324437-88324456 | MS.gene41629:CDS | 30.0% |
| ! | ATTGATAACCCAGCTTATAA+GGG | - | chr3.4:88325612-88325631 | MS.gene41629:intron | 30.0% |
| ! | ATTTTTGTGGCAATGTTGAA+GGG | - | chr3.4:88324379-88324398 | MS.gene41629:CDS | 30.0% |
| !! | ACACTTTGGGTTTTCAATTT+TGG | + | chr3.4:88325511-88325530 | None:intergenic | 30.0% |
| !! | ATCATAATGGATACCAAAAG+AGG | + | chr3.4:88326109-88326128 | None:intergenic | 30.0% |
| !! | CACTTTGGGTTTTCAATTTT+GGG | + | chr3.4:88325510-88325529 | None:intergenic | 30.0% |
| !!! | TGATTTTTGTTTTGGGTATC+AGG | - | chr3.4:88324745-88324764 | MS.gene41629:CDS | 30.0% |
| AAAAGGAACCCAGCTTATAA+GGG | - | chr3.4:88325570-88325589 | MS.gene41629:intron | 35.0% | |
| AAGAGGAAGCAATGAAGAAA+AGG | + | chr3.4:88323624-88323643 | None:intergenic | 35.0% | |
| AAGCAACCAAATCTGACTAT+TGG | - | chr3.4:88326196-88326215 | MS.gene41629:intron | 35.0% | |
| AATCCTATCGTGAAACTACA+TGG | - | chr3.4:88325790-88325809 | MS.gene41629:intron | 35.0% | |
| AATTAATGCGAAACAGATCC+GGG | + | chr3.4:88324680-88324699 | None:intergenic | 35.0% | |
| AGAATTCTCACCTCATTATC+AGG | + | chr3.4:88325177-88325196 | None:intergenic | 35.0% | |
| AGGCATAAAAATCCAAAGAC+TGG | - | chr3.4:88325069-88325088 | MS.gene41629:CDS | 35.0% | |
| ATAAGCTGGGTTATCAATGT+AGG | + | chr3.4:88325610-88325629 | None:intergenic | 35.0% | |
| ATGATAACAAACCAGAAGAC+TGG | - | chr3.4:88325289-88325308 | MS.gene41629:CDS | 35.0% | |
| CAATTAATGCGAAACAGATC+CGG | + | chr3.4:88324681-88324700 | None:intergenic | 35.0% | |
| CATTGAGAAAGAGAAACAGA+AGG | - | chr3.4:88325827-88325846 | MS.gene41629:intron | 35.0% | |
| CTGCAGGAAATCATTGAAAA+GGG | - | chr3.4:88326169-88326188 | MS.gene41629:intron | 35.0% | |
| GAGAAGATAGAGTAAATGGA+AGG | + | chr3.4:88325911-88325930 | None:intergenic | 35.0% | |
| TAAGCTGGGTTATCAATGTA+GGG | + | chr3.4:88325609-88325628 | None:intergenic | 35.0% | |
| TATACTTTATGCTTCTCTGC+AGG | - | chr3.4:88326153-88326172 | MS.gene41629:intron | 35.0% | |
| TCAACATACTTTCCAGTCTT+TGG | + | chr3.4:88325084-88325103 | None:intergenic | 35.0% | |
| TCCATATACCCTTATAAGCT+GGG | + | chr3.4:88325623-88325642 | None:intergenic | 35.0% | |
| TCTCCATATTCTGTCATGTT+TGG | - | chr3.4:88325003-88325022 | MS.gene41629:CDS | 35.0% | |
| TCTGAAAAGGAGGAATACAA+TGG | - | chr3.4:88323806-88323825 | MS.gene41629:intron | 35.0% | |
| TCTGCAGGAAATCATTGAAA+AGG | - | chr3.4:88326168-88326187 | MS.gene41629:intron | 35.0% | |
| TGATAACAAACCAGAAGACT+GGG | - | chr3.4:88325290-88325309 | MS.gene41629:CDS | 35.0% | |
| TGCAGGAAATCATTGAAAAG+GGG | - | chr3.4:88326170-88326189 | MS.gene41629:intron | 35.0% | |
| TTCCATATACCCTTATAAGC+TGG | + | chr3.4:88325624-88325643 | None:intergenic | 35.0% | |
| TTGGATTGTATCTGAAAAGG+AGG | - | chr3.4:88323796-88323815 | MS.gene41629:intron | 35.0% | |
| TTTCCATGTAGTTTCACGAT+AGG | + | chr3.4:88325796-88325815 | None:intergenic | 35.0% | |
| ! | ACATGAGATAGTTTGTCAGA+TGG | + | chr3.4:88325135-88325154 | None:intergenic | 35.0% |
| ! | CATGAGATAGTTTGTCAGAT+GGG | + | chr3.4:88325134-88325153 | None:intergenic | 35.0% |
| ! | CATTGATAACCCAGCTTATA+AGG | - | chr3.4:88325611-88325630 | MS.gene41629:intron | 35.0% |
| ! | CCTTTTCAGATACAATCCAA+CGG | + | chr3.4:88323796-88323815 | None:intergenic | 35.0% |
| ! | CTGCCATTGGTATTGAAATT+TGG | - | chr3.4:88325706-88325725 | MS.gene41629:intron | 35.0% |
| ! | GAAAGTAAGGATGAAAGCAT+AGG | - | chr3.4:88324436-88324455 | MS.gene41629:CDS | 35.0% |
| ! | GATTTTTGTGGCAATGTTGA+AGG | - | chr3.4:88324378-88324397 | MS.gene41629:CDS | 35.0% |
| ! | TCTCAAGTTCAAAGTACTCT+GGG | + | chr3.4:88325665-88325684 | None:intergenic | 35.0% |
| ! | TGGGTCCCTGTAATTTTAAA+AGG | + | chr3.4:88324317-88324336 | None:intergenic | 35.0% |
| ! | TTCTCAAGTTCAAAGTACTC+TGG | + | chr3.4:88325666-88325685 | None:intergenic | 35.0% |
| !! | ATAATGGATACCAAAAGAGG+AGG | + | chr3.4:88326106-88326125 | None:intergenic | 35.0% |
| !! | CATTCTAAAGCCTGATAATG+AGG | - | chr3.4:88325164-88325183 | MS.gene41629:CDS | 35.0% |
| !! | CTCATTATCAGGCTTTAGAA+TGG | + | chr3.4:88325166-88325185 | None:intergenic | 35.0% |
| !! | GTTTGTTATCATCAGGATCA+GGG | + | chr3.4:88325281-88325300 | None:intergenic | 35.0% |
| !! | TCTTCTGGTTTGTTATCATC+AGG | + | chr3.4:88325288-88325307 | None:intergenic | 35.0% |
| AAGCTGAGAAACCTGAAGAA+TGG | - | chr3.4:88325397-88325416 | MS.gene41629:intron | 40.0% | |
| AAGCTGGGTTATCAATGTAG+GGG | + | chr3.4:88325608-88325627 | None:intergenic | 40.0% | |
| AGATTCGTTGTCAAATCCCT+TGG | + | chr3.4:88324986-88325005 | None:intergenic | 40.0% | |
| ATGTTGAAGGGTTGTTGTGT+TGG | - | chr3.4:88324391-88324410 | MS.gene41629:CDS | 40.0% | |
| CATATCACACTATGCAAACC+CGG | - | chr3.4:88324659-88324678 | MS.gene41629:CDS | 40.0% | |
| CCGTTGGATTGTATCTGAAA+AGG | - | chr3.4:88323793-88323812 | MS.gene41629:intron | 40.0% | |
| GAAAAGGAACCCAGCTTATA+AGG | - | chr3.4:88325569-88325588 | MS.gene41629:intron | 40.0% | |
| GAAATTTGGACAATGCAGGA+CGG | - | chr3.4:88325720-88325739 | MS.gene41629:intron | 40.0% | |
| GAACCTGTCATTCTTAAGGA+TGG | - | chr3.4:88324862-88324881 | MS.gene41629:CDS | 40.0% | |
| GATCCATCCTTAAGAATGAC+AGG | + | chr3.4:88324868-88324887 | None:intergenic | 40.0% | |
| GATTCGTTGTCAAATCCCTT+GGG | + | chr3.4:88324985-88325004 | None:intergenic | 40.0% | |
| GCAGGAAATCATTGAAAAGG+GGG | - | chr3.4:88326171-88326190 | MS.gene41629:intron | 40.0% | |
| GGACCAAACATGACAGAATA+TGG | + | chr3.4:88325009-88325028 | None:intergenic | 40.0% | |
| GTCAAATGCCTTCTTCTGTA+AGG | + | chr3.4:88325989-88326008 | None:intergenic | 40.0% | |
| TATATGCACCACCACATTCA+AGG | + | chr3.4:88324927-88324946 | None:intergenic | 40.0% | |
| TCAATACCAATGGCAGCAAT+AGG | + | chr3.4:88325702-88325721 | None:intergenic | 40.0% | |
| TCCACTTTCCCTTATAAGCT+GGG | + | chr3.4:88325581-88325600 | None:intergenic | 40.0% | |
| TGACGAACCTGTCATTCTTA+AGG | - | chr3.4:88324858-88324877 | MS.gene41629:CDS | 40.0% | |
| TGAGAAACCTGAAGAATGGT+TGG | - | chr3.4:88325401-88325420 | MS.gene41629:intron | 40.0% | |
| TGTCACGAAAACAACCACAA+CGG | + | chr3.4:88326233-88326252 | None:intergenic | 40.0% | |
| TTCTTGTTAGTGAACCAGCA+AGG | - | chr3.4:88324812-88324831 | MS.gene41629:CDS | 40.0% | |
| TTCTTTAGGCTCATATTCGG+CGG | - | chr3.4:88326256-88326275 | MS.gene41629:intron | 40.0% | |
| TTGCATAGTGTGATATGCGT+TGG | + | chr3.4:88324656-88324675 | None:intergenic | 40.0% | |
| ! | AACCAAGTCTTTTCTTCTGC+AGG | - | chr3.4:88326363-88326382 | MS.gene41629:intron | 40.0% |
| ! | AATCGGTTTCTGCTACTACA+TGG | - | chr3.4:88323959-88323978 | MS.gene41629:intron | 40.0% |
| ! | ACCCAGCTTATAAGGGTATA+TGG | - | chr3.4:88325619-88325638 | MS.gene41629:intron | 40.0% |
| ! | AGTTCAAAGTACTCTGGGTT+TGG | + | chr3.4:88325660-88325679 | None:intergenic | 40.0% |
| ! | ATAAGGGTATATGGAAGCCT+CGG | - | chr3.4:88325628-88325647 | MS.gene41629:intron | 40.0% |
| ! | ATGGAAGGATTTTCGTTACC+TGG | + | chr3.4:88325896-88325915 | None:intergenic | 40.0% |
| ! | GAGGTGAGAATTCTAGTTGA+CGG | - | chr3.4:88325183-88325202 | MS.gene41629:CDS | 40.0% |
| ! | GTTGTGTTGGCAATATGCTA+CGG | - | chr3.4:88324404-88324423 | MS.gene41629:CDS | 40.0% |
| ! | TCTTATCTTTCTGGCCACTT+AGG | + | chr3.4:88326041-88326060 | None:intergenic | 40.0% |
| !! | ATGAGGATTTTGATAGCCGT+TGG | - | chr3.4:88323777-88323796 | MS.gene41629:intron | 40.0% |
| !! | GGTTTGTTATCATCAGGATC+AGG | + | chr3.4:88325282-88325301 | None:intergenic | 40.0% |
| !! | TGGAAGCATTCTAAGAGTGA+GGG | - | chr3.4:88324772-88324791 | MS.gene41629:CDS | 40.0% |
| ACAAGGTGCACTTCATCTTC+AGG | - | chr3.4:88325049-88325068 | MS.gene41629:CDS | 45.0% | |
| ACCCAGCTTATAAGGGAAAG+TGG | - | chr3.4:88325577-88325596 | MS.gene41629:intron | 45.0% | |
| AGAAGGCTCAAAATCCTCCT+CGG | + | chr3.4:88325238-88325257 | None:intergenic | 45.0% | |
| AGAGAAACAGAAGGCTGAAG+AGG | - | chr3.4:88325836-88325855 | MS.gene41629:intron | 45.0% | |
| AGAGGAAATAGATGACCCAG+AGG | - | chr3.4:88325434-88325453 | MS.gene41629:intron | 45.0% | |
| AGCCTGCAGAAGAAAAGACT+TGG | + | chr3.4:88326368-88326387 | None:intergenic | 45.0% | |
| AGCTGGGTTATCAATGTAGG+GGG | + | chr3.4:88325607-88325626 | None:intergenic | 45.0% | |
| AGGCAACAAAACCTGAGGAT+TGG | - | chr3.4:88325454-88325473 | MS.gene41629:intron | 45.0% | |
| AGTTTCTGTGCGTTCTGTGT+TGG | + | chr3.4:88326419-88326438 | None:intergenic | 45.0% | |
| AGTTTGTCAGATGGGACAGA+AGG | + | chr3.4:88325126-88325145 | None:intergenic | 45.0% | |
| ATCAGGATCAGGGATTGTCT+TGG | + | chr3.4:88325271-88325290 | None:intergenic | 45.0% | |
| ATGATGAGGAGGATGGTGAA+TGG | - | chr3.4:88325478-88325497 | MS.gene41629:intron | 45.0% | |
| CACATTCAAGGCCATTCTGA+AGG | + | chr3.4:88324915-88324934 | None:intergenic | 45.0% | |
| CTCCACTTTCCCTTATAAGC+TGG | + | chr3.4:88325582-88325601 | None:intergenic | 45.0% | |
| CTTCTACGAATCGTTCGATG+AGG | - | chr3.4:88323760-88323779 | MS.gene41629:intron | 45.0% | |
| GATCAGGGATTGTCTTGGAA+GGG | + | chr3.4:88325266-88325285 | None:intergenic | 45.0% | |
| GGCAACAAAACCTGAGGATT+GGG | - | chr3.4:88325455-88325474 | MS.gene41629:intron | 45.0% | |
| GTCTTGGAAGGGATAAGAGA+AGG | + | chr3.4:88325255-88325274 | None:intergenic | 45.0% | |
| GTTTGTCAGATGGGACAGAA+GGG | + | chr3.4:88325125-88325144 | None:intergenic | 45.0% | |
| TCGTCATCCAACCATTCTTC+AGG | + | chr3.4:88325411-88325430 | None:intergenic | 45.0% | |
| TCTGGGTCATCTATTTCCTC+TGG | + | chr3.4:88325435-88325454 | None:intergenic | 45.0% | |
| TCTTTAGGCTCATATTCGGC+GGG | - | chr3.4:88326257-88326276 | MS.gene41629:intron | 45.0% | |
| TGATGAGGAGGATGGTGAAT+GGG | - | chr3.4:88325479-88325498 | MS.gene41629:intron | 45.0% | |
| TGGAATTCTTGCATCCGTTG+TGG | - | chr3.4:88326216-88326235 | MS.gene41629:intron | 45.0% | |
| TGTCTGCGATCTTGTACAAG+AGG | + | chr3.4:88326011-88326030 | None:intergenic | 45.0% | |
| TTCATTCTCTCCACCAGCTT+GGG | + | chr3.4:88326443-88326462 | None:intergenic | 45.0% | |
| TTTGAGCCTATTGCTGCCAT+TGG | - | chr3.4:88325693-88325712 | MS.gene41629:intron | 45.0% | |
| TTTGTCAGATGGGACAGAAG+GGG | + | chr3.4:88325124-88325143 | None:intergenic | 45.0% | |
| ! | ATCTTTCTGGCCACTTAGGA+AGG | + | chr3.4:88326037-88326056 | None:intergenic | 45.0% |
| ! | CTTCAGAATGGCCTTGAATG+TGG | - | chr3.4:88324913-88324932 | MS.gene41629:CDS | 45.0% |
| ! | GTCTTTTCTTCTGCAGGCTA+AGG | - | chr3.4:88326369-88326388 | MS.gene41629:intron | 45.0% |
| ! | TAAGCTGGGTTCCTTTTCGT+TGG | + | chr3.4:88325567-88325586 | None:intergenic | 45.0% |
| ! | TAAGGGTATATGGAAGCCTC+GGG | - | chr3.4:88325629-88325648 | MS.gene41629:intron | 45.0% |
| ! | TCTTTCTGGCCACTTAGGAA+GGG | + | chr3.4:88326036-88326055 | None:intergenic | 45.0% |
| ! | TTTGAGACTCGCCTTCAGAA+TGG | - | chr3.4:88324901-88324920 | MS.gene41629:CDS | 45.0% |
| ! | TTTTCTTCTGCAGGCTAAGG+TGG | - | chr3.4:88326372-88326391 | MS.gene41629:intron | 45.0% |
| !! | CTGGAAGCATTCTAAGAGTG+AGG | - | chr3.4:88324771-88324790 | MS.gene41629:CDS | 45.0% |
| !! | GGAAGCATTCTAAGAGTGAG+GGG | - | chr3.4:88324773-88324792 | MS.gene41629:CDS | 45.0% |
| !! | TGTTTTGGGTATCAGGTGTC+TGG | - | chr3.4:88324752-88324771 | MS.gene41629:CDS | 45.0% |
| AAACAGCCAATGCTCCACGT+AGG | - | chr3.4:88326482-88326501 | MS.gene41629:CDS | 50.0% | |
| AAAGGCTAACTTCCTGTCCG+AGG | - | chr3.4:88325218-88325237 | MS.gene41629:CDS | 50.0% | |
| AAGCTGTAAAGCCAGAGGAC+TGG | - | chr3.4:88325340-88325359 | MS.gene41629:intron | 50.0% | |
| ACAGAAACTTCCCAAGCTGG+TGG | - | chr3.4:88326430-88326449 | MS.gene41629:CDS | 50.0% | |
| ACCTGAGGATTGGGATGATG+AGG | - | chr3.4:88325464-88325483 | MS.gene41629:intron | 50.0% | |
| ACTATGGCGTACTTCCTTGC+TGG | + | chr3.4:88324829-88324848 | None:intergenic | 50.0% | |
| AGCTGTAAAGCCAGAGGACT+GGG | - | chr3.4:88325341-88325360 | MS.gene41629:intron | 50.0% | |
| AGCTTCTGGGTCAGGAATCT+TGG | + | chr3.4:88325325-88325344 | None:intergenic | 50.0% | |
| AGTGGAAGAGGCCAACGAAA+AGG | - | chr3.4:88325553-88325572 | MS.gene41629:intron | 50.0% | |
| ATGTTTGGTCCAGACAGGTG+CGG | - | chr3.4:88325018-88325037 | MS.gene41629:CDS | 50.0% | |
| CTGTCATGTTTGGTCCAGAC+AGG | - | chr3.4:88325013-88325032 | MS.gene41629:CDS | 50.0% | |
| CTTCATTCTCTCCACCAGCT+TGG | + | chr3.4:88326444-88326463 | None:intergenic | 50.0% | |
| GAAACAGAAGGCTGAAGAGG+AGG | - | chr3.4:88325839-88325858 | MS.gene41629:intron | 50.0% | |
| GAAGGCGAGTCTCAAACTGA+AGG | + | chr3.4:88324897-88324916 | None:intergenic | 50.0% | |
| GAGAGTGGTTGGAAACCCAA+GGG | - | chr3.4:88324967-88324986 | MS.gene41629:CDS | 50.0% | |
| GATTGGGATGATGAGGAGGA+TGG | - | chr3.4:88325471-88325490 | MS.gene41629:intron | 50.0% | |
| GCAGACATTCCCTTCCTAAG+TGG | - | chr3.4:88326024-88326043 | MS.gene41629:intron | 50.0% | |
| GCAGCAATAGGCTCAAAGTC+AGG | + | chr3.4:88325690-88325709 | None:intergenic | 50.0% | |
| GGATCAGGGATTGTCTTGGA+AGG | + | chr3.4:88325267-88325286 | None:intergenic | 50.0% | |
| TACCGCATCGTCAGCTTCAT+CGG | + | chr3.4:88323662-88323681 | None:intergenic | 50.0% | |
| TATCTTCAACCCCAGGAGAG+TGG | - | chr3.4:88324952-88324971 | MS.gene41629:CDS | 50.0% | |
| TCCTCATCATCCCAATCCTC+AGG | + | chr3.4:88325468-88325487 | None:intergenic | 50.0% | |
| TGACGGCGAGGAGAAGAAAA+AGG | - | chr3.4:88325200-88325219 | MS.gene41629:CDS | 50.0% | |
| TGAGGATTGGGATGATGAGG+AGG | - | chr3.4:88325467-88325486 | MS.gene41629:intron | 50.0% | |
| TTCCGATGAAGCTGACGATG+CGG | - | chr3.4:88323657-88323676 | MS.gene41629:CDS | 50.0% | |
| TTGTCAGATGGGACAGAAGG+GGG | + | chr3.4:88325123-88325142 | None:intergenic | 50.0% | |
| ! | CAGAATGGCCTTGAATGTGG+TGG | - | chr3.4:88324916-88324935 | MS.gene41629:CDS | 50.0% |
| ! | CAGGGGCTGATTCACACTTT+GGG | + | chr3.4:88325524-88325543 | None:intergenic | 50.0% |
| ! | GAGAATTCTAGTTGACGGCG+AGG | - | chr3.4:88325188-88325207 | MS.gene41629:CDS | 50.0% |
| ! | TTCATCGGAAGCGTGAACGA+AGG | + | chr3.4:88323647-88323666 | None:intergenic | 50.0% |
| !! | AGTGAGGGGCACGATGATTT+TGG | - | chr3.4:88324787-88324806 | MS.gene41629:CDS | 50.0% |
| !! | CCTCTGGCTTTACAGCTTCT+GGG | + | chr3.4:88325338-88325357 | None:intergenic | 50.0% |
| !! | TCCTCTGGCTTTACAGCTTC+TGG | + | chr3.4:88325339-88325358 | None:intergenic | 50.0% |
| !!! | CCTCAGGTTTTGTTGCCTCT+GGG | + | chr3.4:88325452-88325471 | None:intergenic | 50.0% |
| !!! | TCCTCAGGTTTTGTTGCCTC+TGG | + | chr3.4:88325453-88325472 | None:intergenic | 50.0% |
| AAAGCCAGAGGACTGGGATG+AGG | - | chr3.4:88325347-88325366 | MS.gene41629:intron | 55.0% | |
| ATGGTTGGATGACGAGCCAG+AGG | - | chr3.4:88325416-88325435 | MS.gene41629:intron | 55.0% | |
| CAGAAGGGGGGAACTTGAGA+TGG | + | chr3.4:88325110-88325129 | None:intergenic | 55.0% | |
| CCAAAGTGTGAATCAGCCCC+TGG | - | chr3.4:88325522-88325541 | MS.gene41629:intron | 55.0% | |
| CCCAGAAGCTGTAAAGCCAG+AGG | - | chr3.4:88325335-88325354 | MS.gene41629:intron | 55.0% | |
| CCCAGAGGCAACAAAACCTG+AGG | - | chr3.4:88325449-88325468 | MS.gene41629:intron | 55.0% | |
| CGCACAGAAACTTCCCAAGC+TGG | - | chr3.4:88326427-88326446 | MS.gene41629:CDS | 55.0% | |
| CTGGGATGAGGATGCACCTA+TGG | - | chr3.4:88325359-88325378 | MS.gene41629:intron | 55.0% | |
| CTGGTAGCCAGCAATACCCT+CGG | + | chr3.4:88325877-88325896 | None:intergenic | 55.0% | |
| GCTCAAAATCCTCCTCGGAC+AGG | + | chr3.4:88325233-88325252 | None:intergenic | 55.0% | |
| GGAGAGTGGTTGGAAACCCA+AGG | - | chr3.4:88324966-88324985 | MS.gene41629:CDS | 55.0% | |
| GGCTTTACAGCTTCTGGGTC+AGG | + | chr3.4:88325333-88325352 | None:intergenic | 55.0% | |
| GGGTTTCCAACCACTCTCCT+GGG | + | chr3.4:88324965-88324984 | None:intergenic | 55.0% | |
| GGTTACCCCTATCGCTATCG+CGG | - | chr3.4:88323594-88323613 | MS.gene41629:CDS | 55.0% | |
| GGTTTCCAACCACTCTCCTG+GGG | + | chr3.4:88324964-88324983 | None:intergenic | 55.0% | |
| TCTTCCACTCACCACAGCCA+GGG | + | chr3.4:88325542-88325561 | None:intergenic | 55.0% | |
| TCTTCTGCAGGCTAAGGTGG+AGG | - | chr3.4:88326375-88326394 | MS.gene41629:intron | 55.0% | |
| TGGGTTTCCAACCACTCTCC+TGG | + | chr3.4:88324966-88324985 | None:intergenic | 55.0% | |
| TGTCAGATGGGACAGAAGGG+GGG | + | chr3.4:88325122-88325141 | None:intergenic | 55.0% | |
| TGTTTGGTCCAGACAGGTGC+GGG | - | chr3.4:88325019-88325038 | MS.gene41629:CDS | 55.0% | |
| TTCAACCCCAGGAGAGTGGT+TGG | - | chr3.4:88324956-88324975 | MS.gene41629:CDS | 55.0% | |
| ! | CCAGGGGCTGATTCACACTT+TGG | + | chr3.4:88325525-88325544 | None:intergenic | 55.0% |
| ! | GGAAGCGTGAACGAAGGAAG+AGG | + | chr3.4:88323641-88323660 | None:intergenic | 55.0% |
| ! | TCTGGGTTTGGAATCTCCCG+AGG | + | chr3.4:88325648-88325667 | None:intergenic | 55.0% |
| CAGCCAATGCTCCACGTAGG+AGG | - | chr3.4:88326485-88326504 | MS.gene41629:CDS | 60.0% | |
| CAGGTGCGGGGCAACAAACA+AGG | - | chr3.4:88325032-88325051 | MS.gene41629:CDS | 60.0% | |
| CTCTTCCACTCACCACAGCC+AGG | + | chr3.4:88325543-88325562 | None:intergenic | 60.0% | |
| CTGGCTGTGGTGAGTGGAAG+AGG | - | chr3.4:88325541-88325560 | MS.gene41629:intron | 60.0% | |
| CTTCCACTCACCACAGCCAG+GGG | + | chr3.4:88325541-88325560 | None:intergenic | 60.0% | |
| GCATCCTCATCCCAGTCCTC+TGG | + | chr3.4:88325354-88325373 | None:intergenic | 60.0% | |
| GCTCTCTCGTCCCAGTCTTC+TGG | + | chr3.4:88325303-88325322 | None:intergenic | 60.0% | |
| GGCTAACTTCCTGTCCGAGG+AGG | - | chr3.4:88325221-88325240 | MS.gene41629:CDS | 60.0% | |
| GTTTGGTCCAGACAGGTGCG+GGG | - | chr3.4:88325020-88325039 | MS.gene41629:CDS | 60.0% | |
| TCTCGCTTTGGCCTCCTACG+TGG | + | chr3.4:88326499-88326518 | None:intergenic | 60.0% | |
| TGGCCTCCTACGTGGAGCAT+TGG | + | chr3.4:88326491-88326510 | None:intergenic | 60.0% | |
| TGTGAATCAGCCCCTGGCTG+TGG | - | chr3.4:88325528-88325547 | MS.gene41629:intron | 60.0% | |
| TTTGTTGCCCCGCACCTGTC+TGG | + | chr3.4:88325030-88325049 | None:intergenic | 60.0% | |
| ! | GAGCACCGCGATAGCGATAG+GGG | + | chr3.4:88323602-88323621 | None:intergenic | 60.0% |
| !! | AGGAGCACCGCGATAGCGAT+AGG | + | chr3.4:88323604-88323623 | None:intergenic | 60.0% |
| !! | CGAGGGTATTGCTGGCTACC+AGG | - | chr3.4:88325875-88325894 | MS.gene41629:intron | 60.0% |
| !! | GCTGAGTCCGAGGGTATTGC+TGG | - | chr3.4:88325867-88325886 | MS.gene41629:intron | 60.0% |
| !! | GGAGCACCGCGATAGCGATA+GGG | + | chr3.4:88323603-88323622 | None:intergenic | 60.0% |
| GAGGCAGCAGCTGAGTCCGA+GGG | - | chr3.4:88325858-88325877 | MS.gene41629:intron | 65.0% | |
| GCAGGCTAAGGTGGAGGCGA+AGG | - | chr3.4:88326381-88326400 | MS.gene41629:intron | 65.0% | |
| CAGCCCCTGGCTGTGGTGAG+TGG | - | chr3.4:88325535-88325554 | MS.gene41629:intron | 70.0% | |
| GGAGGCAGCAGCTGAGTCCG+AGG | - | chr3.4:88325857-88325876 | MS.gene41629:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 88323580 | 88326525 | 88323580 | ID=MS.gene41629 |
| chr3.4 | mRNA | 88323580 | 88326525 | 88323580 | ID=MS.gene41629.t1;Parent=MS.gene41629 |
| chr3.4 | exon | 88326427 | 88326525 | 88326427 | ID=MS.gene41629.t1.exon1;Parent=MS.gene41629.t1 |
| chr3.4 | CDS | 88326427 | 88326525 | 88326427 | ID=cds.MS.gene41629.t1;Parent=MS.gene41629.t1 |
| chr3.4 | exon | 88326278 | 88326347 | 88326278 | ID=MS.gene41629.t1.exon2;Parent=MS.gene41629.t1 |
| chr3.4 | CDS | 88326278 | 88326347 | 88326278 | ID=cds.MS.gene41629.t1;Parent=MS.gene41629.t1 |
| chr3.4 | exon | 88324209 | 88325338 | 88324209 | ID=MS.gene41629.t1.exon3;Parent=MS.gene41629.t1 |
| chr3.4 | CDS | 88324209 | 88325338 | 88324209 | ID=cds.MS.gene41629.t1;Parent=MS.gene41629.t1 |
| chr3.4 | exon | 88324040 | 88324111 | 88324040 | ID=MS.gene41629.t1.exon4;Parent=MS.gene41629.t1 |
| chr3.4 | CDS | 88324040 | 88324111 | 88324040 | ID=cds.MS.gene41629.t1;Parent=MS.gene41629.t1 |
| chr3.4 | exon | 88323817 | 88323930 | 88323817 | ID=MS.gene41629.t1.exon5;Parent=MS.gene41629.t1 |
| chr3.4 | CDS | 88323817 | 88323930 | 88323817 | ID=cds.MS.gene41629.t1;Parent=MS.gene41629.t1 |
| chr3.4 | exon | 88323580 | 88323720 | 88323580 | ID=MS.gene41629.t1.exon6;Parent=MS.gene41629.t1 |
| chr3.4 | CDS | 88323580 | 88323720 | 88323580 | ID=cds.MS.gene41629.t1;Parent=MS.gene41629.t1 |
| Gene Sequence |
| Protein sequence |
