Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049179.t1 | XP_003602731.1 | 98.7 | 541 | 7 | 0 | 1 | 541 | 1 | 541 | 6.20E-218 | 766.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049179.t1 | O82709 | 82.9 | 508 | 73 | 4 | 1 | 496 | 1 | 506 | 2.3e-168 | 593.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049179.t1 | G7J2R7 | 98.7 | 541 | 7 | 0 | 1 | 541 | 1 | 541 | 4.4e-218 | 766.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049179 | MS.gene06296 | 0.94366 | 8.05E-103 | -1.69E-46 |
| MS.gene049179 | MS.gene41629 | 0.936341 | 2.03E-97 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene82400 | MS.gene049179 | PPI |
| MS.gene56457 | MS.gene049179 | PPI |
| MS.gene001347 | MS.gene049179 | PPI |
| MS.gene006869 | MS.gene049179 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049179.t1 | MTR_3g098430 | 98.336 | 541 | 9 | 0 | 1 | 541 | 1 | 541 | 0.0 | 1076 |
| MS.gene049179.t1 | MTR_3g098430 | 97.436 | 546 | 9 | 1 | 1 | 541 | 1 | 546 | 0.0 | 1070 |
| MS.gene049179.t1 | MTR_8g095680 | 77.273 | 550 | 106 | 6 | 1 | 541 | 1 | 540 | 0.0 | 794 |
| MS.gene049179.t1 | MTR_4g068080 | 33.995 | 403 | 198 | 13 | 8 | 402 | 8 | 350 | 1.46e-58 | 201 |
| MS.gene049179.t1 | MTR_1g083960 | 38.421 | 380 | 175 | 11 | 33 | 405 | 26 | 353 | 3.88e-58 | 199 |
| MS.gene049179.t1 | MTR_7g080370 | 34.474 | 409 | 195 | 14 | 1 | 398 | 1 | 347 | 2.53e-57 | 197 |
| MS.gene049179.t1 | MTR_7g080370 | 34.474 | 409 | 195 | 14 | 1 | 398 | 1 | 347 | 4.99e-57 | 196 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049179.t1 | AT5G61790 | 75.141 | 531 | 125 | 3 | 11 | 541 | 7 | 530 | 0.0 | 801 |
| MS.gene049179.t1 | AT5G07340 | 75.147 | 511 | 117 | 3 | 31 | 539 | 27 | 529 | 0.0 | 771 |
| MS.gene049179.t1 | AT5G07340 | 75.394 | 508 | 115 | 3 | 34 | 539 | 38 | 537 | 0.0 | 769 |
| MS.gene049179.t1 | AT1G56340 | 38.942 | 416 | 188 | 14 | 5 | 413 | 3 | 359 | 6.06e-62 | 209 |
| MS.gene049179.t1 | AT1G56340 | 38.942 | 416 | 188 | 14 | 5 | 413 | 3 | 359 | 1.20e-61 | 209 |
| MS.gene049179.t1 | AT1G09210 | 38.235 | 408 | 186 | 13 | 5 | 405 | 3 | 351 | 4.12e-59 | 202 |
| MS.gene049179.t1 | AT1G08450 | 33.333 | 429 | 217 | 13 | 11 | 423 | 8 | 383 | 8.42e-57 | 196 |
| MS.gene049179.t1 | AT1G08450 | 30.023 | 433 | 201 | 13 | 11 | 423 | 8 | 358 | 3.85e-43 | 159 |
| MS.gene049179.t1 | AT1G08450 | 34.454 | 238 | 106 | 6 | 194 | 423 | 134 | 329 | 1.67e-25 | 108 |
Find 184 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCTGGCTTTACAGCTTC+TGG | 0.065396 | 3.3:+80965197 | None:intergenic |
| TTACAATAATCTTATCTTTC+TGG | 0.129339 | 3.3:+80964486 | None:intergenic |
| CTGCCATTGGTATTGAAATT+TGG | 0.163969 | 3.3:-80964827 | MS.gene049179:CDS |
| CATTGATAACCCAGCTTATA+AGG | 0.184554 | 3.3:-80964922 | MS.gene049179:CDS |
| AGTGAGGGGCACGATGATTT+TGG | 0.222943 | 3.3:-80965746 | MS.gene049179:CDS |
| GAAAAGGAACCCAGCTTATA+AGG | 0.242385 | 3.3:-80964964 | MS.gene049179:CDS |
| TCAACATACTTTCCAGTCTT+TGG | 0.247163 | 3.3:+80965452 | None:intergenic |
| TGGGTTTCCAACCACTCTCC+TGG | 0.263681 | 3.3:+80965570 | None:intergenic |
| CTCTTTCTCAATGTTAAACT+TGG | 0.276239 | 3.3:+80964716 | None:intergenic |
| GCTCTCTCGTCCCAGTCTTC+TGG | 0.293148 | 3.3:+80965233 | None:intergenic |
| TTCGTCAAGTTCTTTAACTA+TGG | 0.306137 | 3.3:+80965691 | None:intergenic |
| AGAATTCTCACCTCATTATC+AGG | 0.319935 | 3.3:+80965359 | None:intergenic |
| TTTGTTGCCCCGCACCTGTC+TGG | 0.320390 | 3.3:+80965506 | None:intergenic |
| CTCCACTTTCCCTTATAAGC+TGG | 0.323256 | 3.3:+80964954 | None:intergenic |
| ACCCAGCTTATAAGGGTATA+TGG | 0.329615 | 3.3:-80964914 | MS.gene049179:CDS |
| AGCTTCTGGGTCAGGAATCT+TGG | 0.330240 | 3.3:+80965211 | None:intergenic |
| AGAATTCCAATAGTCAGATT+TGG | 0.331821 | 3.3:+80964331 | None:intergenic |
| CAGGGGCTGATTCACACTTT+GGG | 0.332470 | 3.3:+80965012 | None:intergenic |
| GGCTTTACAGCTTCTGGGTC+AGG | 0.336142 | 3.3:+80965203 | None:intergenic |
| TTCATTCTCTCCACCAGCTT+GGG | 0.340196 | 3.3:+80964093 | None:intergenic |
| TCCTTTCAATTGTCTCGCTT+TGG | 0.350249 | 3.3:+80964025 | None:intergenic |
| CCTCTGGCTTTACAGCTTCT+GGG | 0.362016 | 3.3:+80965198 | None:intergenic |
| ACTATGGCGTACTTCCTTGC+TGG | 0.364602 | 3.3:+80965707 | None:intergenic |
| AGTTCAAAGTACTCTGGGTT+TGG | 0.371725 | 3.3:+80964876 | None:intergenic |
| GGACCAAACATGACAGAATA+TGG | 0.377257 | 3.3:+80965527 | None:intergenic |
| CTCTTCCACTCACCACAGCC+AGG | 0.377474 | 3.3:+80964993 | None:intergenic |
| TCTTCTGGTTTGTTATCATC+AGG | 0.380136 | 3.3:+80965248 | None:intergenic |
| CCAGGGGCTGATTCACACTT+TGG | 0.380770 | 3.3:+80965011 | None:intergenic |
| AAGCAACCAAATCTGACTAT+TGG | 0.383408 | 3.3:-80964337 | MS.gene049179:CDS |
| GGGTTTCCAACCACTCTCCT+GGG | 0.383983 | 3.3:+80965571 | None:intergenic |
| CTTCATTCTCTCCACCAGCT+TGG | 0.390458 | 3.3:+80964092 | None:intergenic |
| TCTCCATATTCTGTCATGTT+TGG | 0.391928 | 3.3:-80965530 | MS.gene049179:CDS |
| TGACGAACCTGTCATTCTTA+AGG | 0.393509 | 3.3:-80965675 | MS.gene049179:CDS |
| TCGTCATCCAACCATCCTTC+AGG | 0.394777 | 3.3:+80965125 | None:intergenic |
| GGTTTGTTATCATCAGGATC+AGG | 0.396865 | 3.3:+80965254 | None:intergenic |
| GCTGAGTCCGAGGGTATTGC+TGG | 0.398364 | 3.3:-80964666 | MS.gene049179:CDS |
| TTCTCAAGTTCAAAGTACTC+TGG | 0.413427 | 3.3:+80964870 | None:intergenic |
| TTCCATATACCCTTATAAGC+TGG | 0.413553 | 3.3:+80964912 | None:intergenic |
| GGCAACAAAACCTGAGGATT+GGG | 0.417078 | 3.3:-80965078 | MS.gene049179:CDS |
| TCCACTTTCCCTTATAAGCT+GGG | 0.417460 | 3.3:+80964955 | None:intergenic |
| AGCTGTAAAGCCAGAGGACT+GGG | 0.421453 | 3.3:-80965192 | MS.gene049179:CDS |
| CTGGCTGTGGTGAGTGGAAG+AGG | 0.424277 | 3.3:-80964992 | MS.gene049179:CDS |
| TCAATACCAATGGCAGCAAT+AGG | 0.424596 | 3.3:+80964834 | None:intergenic |
| TGACGGCGAGGAGAAGAAAA+AGG | 0.425936 | 3.3:-80965333 | MS.gene049179:CDS |
| TGATGAGGAGGATGGTGAAT+GGG | 0.428154 | 3.3:-80965054 | MS.gene049179:CDS |
| ACAAGGTGCACTTCATCTTC+AGG | 0.433871 | 3.3:-80965484 | MS.gene049179:CDS |
| TGTTTGGTCCAGACAGGTGC+GGG | 0.435806 | 3.3:-80965514 | MS.gene049179:CDS |
| TCTTATCTTTCTGGCCACTT+AGG | 0.437920 | 3.3:+80964495 | None:intergenic |
| CTCATTATCAGGCTTTAGAA+TGG | 0.437946 | 3.3:+80965370 | None:intergenic |
| TACCGCATCGTCAGCTTCAT+CGG | 0.439150 | 3.3:+80966821 | None:intergenic |
| TCTGCAGGAAATCATTGAAA+AGG | 0.446463 | 3.3:-80964365 | MS.gene049179:intron |
| ATGATGAGGAGGATGGTGAA+TGG | 0.451613 | 3.3:-80965055 | MS.gene049179:CDS |
| CTGTCATGTTTGGTCCAGAC+AGG | 0.452777 | 3.3:-80965520 | MS.gene049179:CDS |
| CTGCAGGAAATCATTGAAAA+GGG | 0.453156 | 3.3:-80964364 | MS.gene049179:intron |
| AAGAGGAAGCAAGGAAGAAA+AGG | 0.453312 | 3.3:+80966859 | None:intergenic |
| TTTGAGCCTATTGCTGCCAT+TGG | 0.460151 | 3.3:-80964840 | MS.gene049179:CDS |
| ATCTTTCTGGCCACTTAGGA+AGG | 0.460977 | 3.3:+80964499 | None:intergenic |
| TCCATATACCCTTATAAGCT+GGG | 0.462245 | 3.3:+80964913 | None:intergenic |
| GAATGAAGACAACAAAGAAA+AGG | 0.463345 | 3.3:-80964077 | MS.gene049179:CDS |
| CTGGGATGAGGATGCACCTA+TGG | 0.465153 | 3.3:-80965174 | MS.gene049179:CDS |
| AGTTTCTGTGCGTTCTGTGT+TGG | 0.466104 | 3.3:+80964117 | None:intergenic |
| TCTCAAGTTCAAAGTACTCT+GGG | 0.467035 | 3.3:+80964871 | None:intergenic |
| AAAAGGAACCCAGCTTATAA+GGG | 0.467436 | 3.3:-80964963 | MS.gene049179:CDS |
| ATAAGCTGGGTTATCAATGT+AGG | 0.471071 | 3.3:+80964926 | None:intergenic |
| TCTGGGTCATCTATTTCCTC+TGG | 0.474079 | 3.3:+80965101 | None:intergenic |
| TCTTCCACTCACCACAGCCA+GGG | 0.476497 | 3.3:+80964994 | None:intergenic |
| GCATCCTCATCCCAGTCCTC+TGG | 0.476556 | 3.3:+80965182 | None:intergenic |
| TCCTCATCATCCCAATCCTC+AGG | 0.477110 | 3.3:+80965068 | None:intergenic |
| GATTCGTTGTCAAATCCCTT+GGG | 0.478126 | 3.3:+80965551 | None:intergenic |
| AGATTCGTTGTCAAATCCCT+TGG | 0.479561 | 3.3:+80965550 | None:intergenic |
| AGGCAACAAAACCTGAGGAT+TGG | 0.480179 | 3.3:-80965079 | MS.gene049179:CDS |
| TCTTTCTCAATGTTAAACTT+GGG | 0.480481 | 3.3:+80964717 | None:intergenic |
| TGGCCTCCTACGTGGAGCAT+TGG | 0.487308 | 3.3:+80964045 | None:intergenic |
| TATATGCACCACCACATTCA+AGG | 0.490647 | 3.3:+80965609 | None:intergenic |
| TGATAATATTCTTATAGCTA+AGG | 0.491075 | 3.3:-80964781 | MS.gene049179:CDS |
| AAGCTGTAAAGCCAGAGGAC+TGG | 0.491241 | 3.3:-80965193 | MS.gene049179:CDS |
| ATTGATAACCCAGCTTATAA+GGG | 0.496616 | 3.3:-80964921 | MS.gene049179:CDS |
| ATGATAACAAACCAGAAGAC+TGG | 0.496997 | 3.3:-80965244 | MS.gene049179:CDS |
| CCGTTGGATTGTATCTGAAA+AGG | 0.499726 | 3.3:-80966686 | MS.gene049179:CDS |
| CGAGGGTATTGCTGGCTACC+AGG | 0.502715 | 3.3:-80964658 | MS.gene049179:intron |
| TATTGAAATTTGGACAATGC+AGG | 0.503304 | 3.3:-80964817 | MS.gene049179:CDS |
| TAAGCTGGGTTATCAATGTA+GGG | 0.504397 | 3.3:+80964927 | None:intergenic |
| TCTTCTGCAGGCTAAGGTGG+AGG | 0.505920 | 3.3:-80964158 | MS.gene049179:intron |
| AATCCTATCGTGAAACTACA+TGG | 0.508933 | 3.3:-80964743 | MS.gene049179:CDS |
| GCTCAAAATCCTCCTCGGAC+AGG | 0.517116 | 3.3:+80965303 | None:intergenic |
| ATAAGGGTATATGGAAGCCT+CGG | 0.523060 | 3.3:-80964905 | MS.gene049179:CDS |
| AGGAGCACCGCGATAGCGAT+AGG | 0.523693 | 3.3:+80966879 | None:intergenic |
| CAGCCCCTGGCTGTGGTGAG+TGG | 0.526056 | 3.3:-80964998 | MS.gene049179:CDS |
| TTTCCATGTAGTTTCACGAT+AGG | 0.527990 | 3.3:+80964740 | None:intergenic |
| TTCAACCCCAGGAGAGTGGT+TGG | 0.532251 | 3.3:-80965577 | MS.gene049179:CDS |
| GGAGGCAGCAGCTGAGTCCG+AGG | 0.532327 | 3.3:-80964676 | MS.gene049179:CDS |
| GTTTGTTATCATCAGGATCA+GGG | 0.534077 | 3.3:+80965255 | None:intergenic |
| AGAGAAACAGAAGGCTGAAG+AGG | 0.535396 | 3.3:-80964697 | MS.gene049179:CDS |
| GATCCATCCTTAAGAATGAC+AGG | 0.536585 | 3.3:+80965668 | None:intergenic |
| ATCAGGATCAGGGATTGTCT+TGG | 0.536695 | 3.3:+80965265 | None:intergenic |
| TGTCCAAATTTCAATACCAA+TGG | 0.537978 | 3.3:+80964824 | None:intergenic |
| TAAGGGTATATGGAAGCCTC+GGG | 0.538372 | 3.3:-80964904 | MS.gene049179:CDS |
| ACCCAGCTTATAAGGGAAAG+TGG | 0.538755 | 3.3:-80964956 | MS.gene049179:CDS |
| CATTCTAAAGCCTGATAATG+AGG | 0.539931 | 3.3:-80965369 | MS.gene049179:CDS |
| TCTTCATCAATAATTTCCAT+AGG | 0.540356 | 3.3:+80965158 | None:intergenic |
| ACCTGAGGATTGGGATGATG+AGG | 0.540446 | 3.3:-80965069 | MS.gene049179:CDS |
| CTTCCACTCACCACAGCCAG+GGG | 0.542397 | 3.3:+80964995 | None:intergenic |
| TTTGAGACTCGCCTTCAGAA+TGG | 0.542633 | 3.3:-80965632 | MS.gene049179:CDS |
| GCAGCAATAGGCTCAAAGTC+AGG | 0.545429 | 3.3:+80964846 | None:intergenic |
| CGCACAGAAACTTCCCAAGC+TGG | 0.545555 | 3.3:-80964106 | MS.gene049179:CDS |
| GAAACAGAAGGCTGAAGAGG+AGG | 0.547348 | 3.3:-80964694 | MS.gene049179:CDS |
| AGTTTGTCAGATGGGACAGA+AGG | 0.547484 | 3.3:+80965410 | None:intergenic |
| CATGAGATAGTTTGTCAGAT+GGG | 0.548220 | 3.3:+80965402 | None:intergenic |
| GTTTGTCAGATGGGACAGAA+GGG | 0.550204 | 3.3:+80965411 | None:intergenic |
| CCAAAGTGTGAATCAGCCCC+TGG | 0.551044 | 3.3:-80965011 | MS.gene049179:CDS |
| TTGTCAGATGGGACAGAAGG+GGG | 0.552914 | 3.3:+80965413 | None:intergenic |
| GCAGGCTAAGGTGGAGGCGA+AGG | 0.553851 | 3.3:-80964152 | MS.gene049179:intron |
| AGTGGAAGAGGCCAACGAAA+AGG | 0.554259 | 3.3:-80964980 | MS.gene049179:CDS |
| GGTTTCCAACCACTCTCCTG+GGG | 0.554990 | 3.3:+80965572 | None:intergenic |
| ATTAGCAATGGTGGAACGAA+AGG | 0.558203 | 3.3:-80966907 | None:intergenic |
| GAACGAAGGAAGAGGAAGCA+AGG | 0.558270 | 3.3:+80966850 | None:intergenic |
| CACATTCAAGGCCATTCTGA+AGG | 0.558745 | 3.3:+80965621 | None:intergenic |
| CAGGTGCGGGGCAACAAACA+AGG | 0.564763 | 3.3:-80965501 | MS.gene049179:CDS |
| AAAGCCAGAGGACTGGGATG+AGG | 0.564770 | 3.3:-80965186 | MS.gene049179:CDS |
| GGAGCACCGCGATAGCGATA+GGG | 0.567430 | 3.3:+80966880 | None:intergenic |
| ATGTTTGGTCCAGACAGGTG+CGG | 0.569118 | 3.3:-80965515 | MS.gene049179:CDS |
| GGATCAGGGATTGTCTTGGA+AGG | 0.571851 | 3.3:+80965269 | None:intergenic |
| TCTTTCTGGCCACTTAGGAA+GGG | 0.574034 | 3.3:+80964500 | None:intergenic |
| GATTGGGATGATGAGGAGGA+TGG | 0.574150 | 3.3:-80965062 | MS.gene049179:CDS |
| TGTGAATCAGCCCCTGGCTG+TGG | 0.575974 | 3.3:-80965005 | MS.gene049179:CDS |
| GAGGTGAGAATTCTAGTTGA+CGG | 0.579771 | 3.3:-80965350 | MS.gene049179:CDS |
| CAGCCAATGCTCCACGTAGG+AGG | 0.580449 | 3.3:-80964048 | MS.gene049179:CDS |
| TCTTTAGGCTCATATTCGGC+GGG | 0.582978 | 3.3:-80964276 | MS.gene049179:CDS |
| TTCTTTAGGCTCATATTCGG+CGG | 0.583806 | 3.3:-80964277 | MS.gene049179:CDS |
| TGGAAGCATTCTAAGAGTGA+GGG | 0.585471 | 3.3:-80965761 | MS.gene049179:CDS |
| GGAAGCGTGAACGAAGGAAG+AGG | 0.587228 | 3.3:+80966842 | None:intergenic |
| CTGGAAGCATTCTAAGAGTG+AGG | 0.587589 | 3.3:-80965762 | MS.gene049179:CDS |
| GGAGAGTGGTTGGAAACCCA+AGG | 0.591216 | 3.3:-80965567 | MS.gene049179:CDS |
| GCAGACATTCCCTTCCTAAG+TGG | 0.593740 | 3.3:-80964509 | MS.gene049179:CDS |
| GAACCTGTCATTCTTAAGGA+TGG | 0.594415 | 3.3:-80965671 | MS.gene049179:CDS |
| AGAAGGCTCAAAATCCTCCT+CGG | 0.597536 | 3.3:+80965298 | None:intergenic |
| TATTAAATATCTTCAACCCC+AGG | 0.601083 | 3.3:-80965588 | MS.gene049179:CDS |
| TGAGAAACCTGAAGGATGGT+TGG | 0.601270 | 3.3:-80965132 | MS.gene049179:CDS |
| TCTGGGTTTGGAATCTCCCG+AGG | 0.605370 | 3.3:+80964888 | None:intergenic |
| ACATGAGATAGTTTGTCAGA+TGG | 0.606072 | 3.3:+80965401 | None:intergenic |
| TCTCGCTTTGGCCTCCTACG+TGG | 0.607453 | 3.3:+80964037 | None:intergenic |
| GTCTTGGAAGGGATAAGAGA+AGG | 0.612453 | 3.3:+80965281 | None:intergenic |
| GAGGCAGCAGCTGAGTCCGA+GGG | 0.612757 | 3.3:-80964675 | MS.gene049179:CDS |
| CTTCAGAATGGCCTTGAATG+TGG | 0.614341 | 3.3:-80965620 | MS.gene049179:CDS |
| TATCTTCAACCCCAGGAGAG+TGG | 0.614389 | 3.3:-80965581 | MS.gene049179:CDS |
| TTTGTCAGATGGGACAGAAG+GGG | 0.617670 | 3.3:+80965412 | None:intergenic |
| TGGAATTCTTGCATCCGTTG+TGG | 0.618008 | 3.3:-80964317 | MS.gene049179:CDS |
| TGTCTGCGATCTTGTACAAG+AGG | 0.619339 | 3.3:+80964525 | None:intergenic |
| TTCTTGTTAGTGAACCAGCA+AGG | 0.619414 | 3.3:-80965721 | MS.gene049179:CDS |
| GAGCACCGCGATAGCGATAG+GGG | 0.620301 | 3.3:+80966881 | None:intergenic |
| AAGCTGAGAAACCTGAAGGA+TGG | 0.623492 | 3.3:-80965136 | MS.gene049179:CDS |
| TGCAGGAAATCATTGAAAAG+GGG | 0.624295 | 3.3:-80964363 | MS.gene049179:intron |
| CAGAATGGCCTTGAATGTGG+TGG | 0.626980 | 3.3:-80965617 | MS.gene049179:CDS |
| GCAGGAAATCATTGAAAAGG+GGG | 0.627203 | 3.3:-80964362 | MS.gene049179:intron |
| GAAGGCGAGTCTCAAACTGA+AGG | 0.630110 | 3.3:+80965639 | None:intergenic |
| TGTCAGATGGGACAGAAGGG+GGG | 0.631248 | 3.3:+80965414 | None:intergenic |
| TTCATCGGAAGCGTGAACGA+AGG | 0.632521 | 3.3:+80966836 | None:intergenic |
| GATCAGGGATTGTCTTGGAA+GGG | 0.635602 | 3.3:+80965270 | None:intergenic |
| TGATAACAAACCAGAAGACT+GGG | 0.636071 | 3.3:-80965243 | MS.gene049179:CDS |
| TTGGATTGTATCTGAAAAGG+AGG | 0.638329 | 3.3:-80966683 | MS.gene049179:CDS |
| CTGGTAGCCAGCAATACCCT+CGG | 0.639757 | 3.3:+80964659 | None:intergenic |
| ATGGTTGGATGACGAGCCAG+AGG | 0.645028 | 3.3:-80965117 | MS.gene049179:CDS |
| GGCTAACTTCCTGTCCGAGG+AGG | 0.645087 | 3.3:-80965312 | MS.gene049179:CDS |
| GAGAATTCTAGTTGACGGCG+AGG | 0.652459 | 3.3:-80965345 | MS.gene049179:CDS |
| CTTCTACGAATCGTTCGATG+AGG | 0.652723 | 3.3:-80966719 | MS.gene049179:CDS |
| AAAGGCTAACTTCCTGTCCG+AGG | 0.652948 | 3.3:-80965315 | MS.gene049179:CDS |
| AGCTGGGTTATCAATGTAGG+GGG | 0.658344 | 3.3:+80964929 | None:intergenic |
| GGAAGCATTCTAAGAGTGAG+GGG | 0.661084 | 3.3:-80965760 | MS.gene049179:CDS |
| AAGCTGGGTTATCAATGTAG+GGG | 0.662575 | 3.3:+80964928 | None:intergenic |
| TGAGGATTGGGATGATGAGG+AGG | 0.663099 | 3.3:-80965066 | MS.gene049179:CDS |
| CATTGAGAAAGAGAAACAGA+AGG | 0.664396 | 3.3:-80964706 | MS.gene049179:CDS |
| GAAATTTGGACAATGCAGGA+CGG | 0.665071 | 3.3:-80964813 | MS.gene049179:CDS |
| ACAGAAACTTCCCAAGCTGG+TGG | 0.666572 | 3.3:-80964103 | MS.gene049179:CDS |
| GAGAGTGGTTGGAAACCCAA+GGG | 0.671705 | 3.3:-80965566 | MS.gene049179:CDS |
| TCTGAAAAGGAGGAATACAA+TGG | 0.671724 | 3.3:-80966673 | MS.gene049179:intron |
| CCCAGAAGCTGTAAAGCCAG+AGG | 0.676697 | 3.3:-80965198 | MS.gene049179:CDS |
| TTCCGATGAAGCTGACGATG+CGG | 0.679909 | 3.3:-80966823 | MS.gene049179:intron |
| CCCAGAGGCAACAAAACCTG+AGG | 0.683397 | 3.3:-80965084 | MS.gene049179:CDS |
| GGTTACCCCTATCGCTATCG+CGG | 0.684117 | 3.3:-80966886 | MS.gene049179:CDS |
| GTTTGGTCCAGACAGGTGCG+GGG | 0.694516 | 3.3:-80965513 | MS.gene049179:CDS |
| GAAGAAGCTGAGAAACCTGA+AGG | 0.695392 | 3.3:-80965140 | MS.gene049179:CDS |
| AGAGGAAATAGATGACCCAG+AGG | 0.718864 | 3.3:-80965099 | MS.gene049179:CDS |
| AAACAGCCAATGCTCCACGT+AGG | 0.734567 | 3.3:-80964051 | MS.gene049179:CDS |
| TGTCACGAAAACAACCACAA+CGG | 0.747223 | 3.3:+80964303 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATAATGAATAATG+AGG | + | chr3.3:80964146-80964165 | None:intergenic | 10.0% |
| !!! | ATTATTAATTAATTGTGTTT+TGG | - | chr3.3:80964345-80964364 | MS.gene049179:CDS | 10.0% |
| !! | ATGAAATTAAATAGAAACTA+AGG | - | chr3.3:80964922-80964941 | MS.gene049179:CDS | 15.0% |
| !! | ATTTCAAAAAATATTCCTAT+TGG | + | chr3.3:80964788-80964807 | None:intergenic | 15.0% |
| !!! | AAATATAAGAATGATTTTTG+TGG | - | chr3.3:80964804-80964823 | MS.gene049179:CDS | 15.0% |
| !!! | GATAACTTTTTAAAAGAAAT+CGG | - | chr3.3:80964391-80964410 | MS.gene049179:intron | 15.0% |
| !!! | TACATTTTGATTTTTGTTTT+GGG | - | chr3.3:80965135-80965154 | MS.gene049179:CDS | 15.0% |
| !!! | TATTTTTTTTTTGTTTGTGA+TGG | - | chr3.3:80964156-80964175 | MS.gene049179:intron | 15.0% |
| !! | AAATGTACATCAAAATTTGT+TGG | + | chr3.3:80965122-80965141 | None:intergenic | 20.0% |
| !! | TGATAATATTCTTATAGCTA+AGG | - | chr3.3:80966149-80966168 | MS.gene049179:intron | 20.0% |
| !! | TTACAATAATCTTATCTTTC+TGG | + | chr3.3:80966447-80966466 | None:intergenic | 20.0% |
| !!! | AATTTTAAAAGGAAATCAAG+TGG | + | chr3.3:80964744-80964763 | None:intergenic | 20.0% |
| !!! | GATTTCCTTTTAAAATTACA+GGG | - | chr3.3:80964747-80964766 | MS.gene049179:CDS | 20.0% |
| !!! | GTACATTTTGATTTTTGTTT+TGG | - | chr3.3:80965134-80965153 | MS.gene049179:CDS | 20.0% |
| !!! | TGATTTCCTTTTAAAATTAC+AGG | - | chr3.3:80964746-80964765 | MS.gene049179:CDS | 20.0% |
| ! | AATGGTAAGTAAATTCGAAT+CGG | - | chr3.3:80964275-80964294 | MS.gene049179:CDS | 25.0% |
| ! | ACGGAATAATAATGAAAGTA+AGG | - | chr3.3:80964861-80964880 | MS.gene049179:CDS | 25.0% |
| ! | ATACATGTGTATAATATTGC+AGG | - | chr3.3:80964705-80964724 | MS.gene049179:CDS | 25.0% |
| ! | CTCGTTCATATTAATTTCAT+GGG | - | chr3.3:80966709-80966728 | MS.gene049179:CDS | 25.0% |
| ! | GATAAAATTTCACAACTTAC+AGG | + | chr3.3:80966686-80966705 | None:intergenic | 25.0% |
| ! | GATTTAAGTAAAACCTAATC+TGG | - | chr3.3:80964475-80964494 | MS.gene049179:intron | 25.0% |
| ! | TCGTTCATATTAATTTCATG+GGG | - | chr3.3:80966710-80966729 | MS.gene049179:CDS | 25.0% |
| ! | TCTTAAGAATCATATGAAAG+TGG | + | chr3.3:80964968-80964987 | None:intergenic | 25.0% |
| ! | TCTTCATCAATAATTTCCAT+AGG | + | chr3.3:80965775-80965794 | None:intergenic | 25.0% |
| ! | TCTTTCTCAATGTTAAACTT+GGG | + | chr3.3:80966216-80966235 | None:intergenic | 25.0% |
| !! | ATTTTCTTTAGGCTCATATT+CGG | - | chr3.3:80966650-80966669 | MS.gene049179:intron | 25.0% |
| !! | GCAAGTTCAATAAATTTTGA+AGG | - | chr3.3:80965020-80965039 | MS.gene049179:CDS | 25.0% |
| !! | GTATTTTTCATTCACATTCA+TGG | - | chr3.3:80966733-80966752 | MS.gene049179:intron | 25.0% |
| !! | TTTAAATTTTCCTCCTCTTT+TGG | - | chr3.3:80966490-80966509 | MS.gene049179:intron | 25.0% |
| !! | TTTTCGTGACAATTTTCTTT+AGG | - | chr3.3:80966639-80966658 | MS.gene049179:intron | 25.0% |
| !!! | TCCTATTGGTTTTTATAGTT+GGG | + | chr3.3:80964774-80964793 | None:intergenic | 25.0% |
| !!! | TTCCTATTGGTTTTTATAGT+TGG | + | chr3.3:80964775-80964794 | None:intergenic | 25.0% |
| !!! | TTTTTTTACCTTACAGAAGA+AGG | - | chr3.3:80966375-80966394 | MS.gene049179:intron | 25.0% |
| AAACAAACTAACTGCTATTC+TGG | - | chr3.3:80964573-80964592 | MS.gene049179:intron | 30.0% | |
| AAGAATCATATGAAAGTGGT+TGG | + | chr3.3:80964964-80964983 | None:intergenic | 30.0% | |
| AAGAGAGAAGATAGAGTAAA+TGG | + | chr3.3:80966312-80966331 | None:intergenic | 30.0% | |
| ACCCAACTATAAAAACCAAT+AGG | - | chr3.3:80964770-80964789 | MS.gene049179:CDS | 30.0% | |
| AGAATTCCAATAGTCAGATT+TGG | + | chr3.3:80966602-80966621 | None:intergenic | 30.0% | |
| ATAATATTGCAGGCTAGATT+TGG | - | chr3.3:80964715-80964734 | MS.gene049179:CDS | 30.0% | |
| ATCCAGTAAGTGAATCATAA+TGG | + | chr3.3:80966519-80966538 | None:intergenic | 30.0% | |
| ATCCATTATGATTCACTTAC+TGG | - | chr3.3:80966514-80966533 | MS.gene049179:intron | 30.0% | |
| ATGCATAAGAAAGAAAAGGA+AGG | + | chr3.3:80966346-80966365 | None:intergenic | 30.0% | |
| ATTATGATTCACTTACTGGA+TGG | - | chr3.3:80966518-80966537 | MS.gene049179:intron | 30.0% | |
| CATCATGCATAAGAAAGAAA+AGG | + | chr3.3:80966350-80966369 | None:intergenic | 30.0% | |
| CGTTCATATTAATTTCATGG+GGG | - | chr3.3:80966711-80966730 | MS.gene049179:CDS | 30.0% | |
| CTCTTTCTCAATGTTAAACT+TGG | + | chr3.3:80966217-80966236 | None:intergenic | 30.0% | |
| GAATGAAGACAACAAAGAAA+AGG | - | chr3.3:80966853-80966872 | MS.gene049179:CDS | 30.0% | |
| GCTCGTTCATATTAATTTCA+TGG | - | chr3.3:80966708-80966727 | MS.gene049179:CDS | 30.0% | |
| GTGAATCAATAATCCAGATT+AGG | + | chr3.3:80964491-80964510 | None:intergenic | 30.0% | |
| TATTAAATATCTTCAACCCC+AGG | - | chr3.3:80965342-80965361 | MS.gene049179:CDS | 30.0% | |
| TATTGAAATTTGGACAATGC+AGG | - | chr3.3:80966113-80966132 | MS.gene049179:intron | 30.0% | |
| TGTCCAAATTTCAATACCAA+TGG | + | chr3.3:80966109-80966128 | None:intergenic | 30.0% | |
| TTCGTCAAGTTCTTTAACTA+TGG | + | chr3.3:80965242-80965261 | None:intergenic | 30.0% | |
| ! | AAAGTAAGGATGAAAGCATA+GGG | - | chr3.3:80964875-80964894 | MS.gene049179:CDS | 30.0% |
| ! | ATTGATAACCCAGCTTATAA+GGG | - | chr3.3:80966009-80966028 | MS.gene049179:intron | 30.0% |
| ! | ATTTTTGTGGCAATGTTGAA+GGG | - | chr3.3:80964817-80964836 | MS.gene049179:CDS | 30.0% |
| !! | ACACTTTGGGTTTTCAATTT+TGG | + | chr3.3:80965908-80965927 | None:intergenic | 30.0% |
| !! | ATCATAATGGATACCAAAAG+AGG | + | chr3.3:80966506-80966525 | None:intergenic | 30.0% |
| !! | CACTTTGGGTTTTCAATTTT+GGG | + | chr3.3:80965907-80965926 | None:intergenic | 30.0% |
| !!! | TGATTTTTGTTTTGGGTATC+AGG | - | chr3.3:80965142-80965161 | MS.gene049179:CDS | 30.0% |
| AAAAGGAACCCAGCTTATAA+GGG | - | chr3.3:80965967-80965986 | MS.gene049179:intron | 35.0% | |
| AAGCAACCAAATCTGACTAT+TGG | - | chr3.3:80966593-80966612 | MS.gene049179:intron | 35.0% | |
| AATCCTATCGTGAAACTACA+TGG | - | chr3.3:80966187-80966206 | MS.gene049179:intron | 35.0% | |
| AATTAATGCGAAACAGATCC+GGG | + | chr3.3:80965077-80965096 | None:intergenic | 35.0% | |
| AGAATTCTCACCTCATTATC+AGG | + | chr3.3:80965574-80965593 | None:intergenic | 35.0% | |
| AGGCATAAAAATCCAAAGAC+TGG | - | chr3.3:80965466-80965485 | MS.gene049179:CDS | 35.0% | |
| ATAAGCTGGGTTATCAATGT+AGG | + | chr3.3:80966007-80966026 | None:intergenic | 35.0% | |
| ATGATAACAAACCAGAAGAC+TGG | - | chr3.3:80965686-80965705 | MS.gene049179:CDS | 35.0% | |
| CAATTAATGCGAAACAGATC+CGG | + | chr3.3:80965078-80965097 | None:intergenic | 35.0% | |
| CATTGAGAAAGAGAAACAGA+AGG | - | chr3.3:80966224-80966243 | MS.gene049179:intron | 35.0% | |
| CTGCAGGAAATCATTGAAAA+GGG | - | chr3.3:80966566-80966585 | MS.gene049179:intron | 35.0% | |
| GAGAAGATAGAGTAAATGGA+AGG | + | chr3.3:80966308-80966327 | None:intergenic | 35.0% | |
| TAAGCTGGGTTATCAATGTA+GGG | + | chr3.3:80966006-80966025 | None:intergenic | 35.0% | |
| TATACTTTATGCTTCTCTGC+AGG | - | chr3.3:80966550-80966569 | MS.gene049179:intron | 35.0% | |
| TCAACATACTTTCCAGTCTT+TGG | + | chr3.3:80965481-80965500 | None:intergenic | 35.0% | |
| TCCATATACCCTTATAAGCT+GGG | + | chr3.3:80966020-80966039 | None:intergenic | 35.0% | |
| TCTCCATATTCTGTCATGTT+TGG | - | chr3.3:80965400-80965419 | MS.gene049179:CDS | 35.0% | |
| TCTGAAAAGGAGGAATACAA+TGG | - | chr3.3:80964257-80964276 | MS.gene049179:intron | 35.0% | |
| TCTGCAGGAAATCATTGAAA+AGG | - | chr3.3:80966565-80966584 | MS.gene049179:intron | 35.0% | |
| TGATAACAAACCAGAAGACT+GGG | - | chr3.3:80965687-80965706 | MS.gene049179:CDS | 35.0% | |
| TGCAGGAAATCATTGAAAAG+GGG | - | chr3.3:80966567-80966586 | MS.gene049179:intron | 35.0% | |
| TTCCATATACCCTTATAAGC+TGG | + | chr3.3:80966021-80966040 | None:intergenic | 35.0% | |
| TTGGATTGTATCTGAAAAGG+AGG | - | chr3.3:80964247-80964266 | MS.gene049179:intron | 35.0% | |
| TTTCCATGTAGTTTCACGAT+AGG | + | chr3.3:80966193-80966212 | None:intergenic | 35.0% | |
| ! | ACATGAGATAGTTTGTCAGA+TGG | + | chr3.3:80965532-80965551 | None:intergenic | 35.0% |
| ! | CATGAGATAGTTTGTCAGAT+GGG | + | chr3.3:80965531-80965550 | None:intergenic | 35.0% |
| ! | CATTGATAACCCAGCTTATA+AGG | - | chr3.3:80966008-80966027 | MS.gene049179:intron | 35.0% |
| ! | CCTTTTCAGATACAATCCAA+CGG | + | chr3.3:80964247-80964266 | None:intergenic | 35.0% |
| ! | CTGCCATTGGTATTGAAATT+TGG | - | chr3.3:80966103-80966122 | MS.gene049179:intron | 35.0% |
| ! | GAAAGTAAGGATGAAAGCAT+AGG | - | chr3.3:80964874-80964893 | MS.gene049179:CDS | 35.0% |
| ! | GATTTTTGTGGCAATGTTGA+AGG | - | chr3.3:80964816-80964835 | MS.gene049179:CDS | 35.0% |
| ! | TCTCAAGTTCAAAGTACTCT+GGG | + | chr3.3:80966062-80966081 | None:intergenic | 35.0% |
| ! | TGGGTCCCTGTAATTTTAAA+AGG | + | chr3.3:80964755-80964774 | None:intergenic | 35.0% |
| ! | TTCTCAAGTTCAAAGTACTC+TGG | + | chr3.3:80966063-80966082 | None:intergenic | 35.0% |
| !! | ATAATGGATACCAAAAGAGG+AGG | + | chr3.3:80966503-80966522 | None:intergenic | 35.0% |
| !! | CATTCTAAAGCCTGATAATG+AGG | - | chr3.3:80965561-80965580 | MS.gene049179:CDS | 35.0% |
| !! | CTCATTATCAGGCTTTAGAA+TGG | + | chr3.3:80965563-80965582 | None:intergenic | 35.0% |
| !! | GTTTGTTATCATCAGGATCA+GGG | + | chr3.3:80965678-80965697 | None:intergenic | 35.0% |
| !! | TCTTCTGGTTTGTTATCATC+AGG | + | chr3.3:80965685-80965704 | None:intergenic | 35.0% |
| AAGAGGAAGCAAGGAAGAAA+AGG | + | chr3.3:80964074-80964093 | None:intergenic | 40.0% | |
| AAGCTGGGTTATCAATGTAG+GGG | + | chr3.3:80966005-80966024 | None:intergenic | 40.0% | |
| AGATTCGTTGTCAAATCCCT+TGG | + | chr3.3:80965383-80965402 | None:intergenic | 40.0% | |
| ATGTTGAAGGGTTGTTGTGT+TGG | - | chr3.3:80964829-80964848 | MS.gene049179:CDS | 40.0% | |
| CATATCACACTATGCAAACC+CGG | - | chr3.3:80965056-80965075 | MS.gene049179:CDS | 40.0% | |
| CCGTTGGATTGTATCTGAAA+AGG | - | chr3.3:80964244-80964263 | MS.gene049179:intron | 40.0% | |
| GAAAAGGAACCCAGCTTATA+AGG | - | chr3.3:80965966-80965985 | MS.gene049179:intron | 40.0% | |
| GAAATTTGGACAATGCAGGA+CGG | - | chr3.3:80966117-80966136 | MS.gene049179:intron | 40.0% | |
| GAACCTGTCATTCTTAAGGA+TGG | - | chr3.3:80965259-80965278 | MS.gene049179:CDS | 40.0% | |
| GATCCATCCTTAAGAATGAC+AGG | + | chr3.3:80965265-80965284 | None:intergenic | 40.0% | |
| GATTCGTTGTCAAATCCCTT+GGG | + | chr3.3:80965382-80965401 | None:intergenic | 40.0% | |
| GCAGGAAATCATTGAAAAGG+GGG | - | chr3.3:80966568-80966587 | MS.gene049179:intron | 40.0% | |
| GGACCAAACATGACAGAATA+TGG | + | chr3.3:80965406-80965425 | None:intergenic | 40.0% | |
| GTCAAATGCCTTCTTCTGTA+AGG | + | chr3.3:80966386-80966405 | None:intergenic | 40.0% | |
| TATATGCACCACCACATTCA+AGG | + | chr3.3:80965324-80965343 | None:intergenic | 40.0% | |
| TCAATACCAATGGCAGCAAT+AGG | + | chr3.3:80966099-80966118 | None:intergenic | 40.0% | |
| TCCACTTTCCCTTATAAGCT+GGG | + | chr3.3:80965978-80965997 | None:intergenic | 40.0% | |
| TGACGAACCTGTCATTCTTA+AGG | - | chr3.3:80965255-80965274 | MS.gene049179:CDS | 40.0% | |
| TGTCACGAAAACAACCACAA+CGG | + | chr3.3:80966630-80966649 | None:intergenic | 40.0% | |
| TTCTTGTTAGTGAACCAGCA+AGG | - | chr3.3:80965209-80965228 | MS.gene049179:CDS | 40.0% | |
| TTCTTTAGGCTCATATTCGG+CGG | - | chr3.3:80966653-80966672 | MS.gene049179:intron | 40.0% | |
| TTGCATAGTGTGATATGCGT+TGG | + | chr3.3:80965053-80965072 | None:intergenic | 40.0% | |
| ! | AACCAAGTCTTTTCTTCTGC+AGG | - | chr3.3:80966760-80966779 | MS.gene049179:intron | 40.0% |
| ! | AATCGGTTTCTGCTACTACA+TGG | - | chr3.3:80964408-80964427 | MS.gene049179:intron | 40.0% |
| ! | ACCCAGCTTATAAGGGTATA+TGG | - | chr3.3:80966016-80966035 | MS.gene049179:intron | 40.0% |
| ! | AGTTCAAAGTACTCTGGGTT+TGG | + | chr3.3:80966057-80966076 | None:intergenic | 40.0% |
| ! | ATAAGGGTATATGGAAGCCT+CGG | - | chr3.3:80966025-80966044 | MS.gene049179:intron | 40.0% |
| ! | ATGGAAGGATTTTCGTTACC+TGG | + | chr3.3:80966293-80966312 | None:intergenic | 40.0% |
| ! | GAGGTGAGAATTCTAGTTGA+CGG | - | chr3.3:80965580-80965599 | MS.gene049179:CDS | 40.0% |
| ! | GTTGTGTTGGCAATATGCTA+CGG | - | chr3.3:80964842-80964861 | MS.gene049179:CDS | 40.0% |
| ! | TCTTATCTTTCTGGCCACTT+AGG | + | chr3.3:80966438-80966457 | None:intergenic | 40.0% |
| !! | ATGAGGATTTTGATAGCCGT+TGG | - | chr3.3:80964228-80964247 | MS.gene049179:intron | 40.0% |
| !! | GGTTTGTTATCATCAGGATC+AGG | + | chr3.3:80965679-80965698 | None:intergenic | 40.0% |
| !! | TGGAAGCATTCTAAGAGTGA+GGG | - | chr3.3:80965169-80965188 | MS.gene049179:CDS | 40.0% |
| AAGCTGAGAAACCTGAAGGA+TGG | - | chr3.3:80965794-80965813 | MS.gene049179:intron | 45.0% | |
| ACAAGGTGCACTTCATCTTC+AGG | - | chr3.3:80965446-80965465 | MS.gene049179:CDS | 45.0% | |
| ACCCAGCTTATAAGGGAAAG+TGG | - | chr3.3:80965974-80965993 | MS.gene049179:intron | 45.0% | |
| AGAAGGCTCAAAATCCTCCT+CGG | + | chr3.3:80965635-80965654 | None:intergenic | 45.0% | |
| AGAGAAACAGAAGGCTGAAG+AGG | - | chr3.3:80966233-80966252 | MS.gene049179:intron | 45.0% | |
| AGAGGAAATAGATGACCCAG+AGG | - | chr3.3:80965831-80965850 | MS.gene049179:intron | 45.0% | |
| AGCCTGCAGAAGAAAAGACT+TGG | + | chr3.3:80966765-80966784 | None:intergenic | 45.0% | |
| AGCTGGGTTATCAATGTAGG+GGG | + | chr3.3:80966004-80966023 | None:intergenic | 45.0% | |
| AGGCAACAAAACCTGAGGAT+TGG | - | chr3.3:80965851-80965870 | MS.gene049179:intron | 45.0% | |
| AGTTTCTGTGCGTTCTGTGT+TGG | + | chr3.3:80966816-80966835 | None:intergenic | 45.0% | |
| AGTTTGTCAGATGGGACAGA+AGG | + | chr3.3:80965523-80965542 | None:intergenic | 45.0% | |
| ATCAGGATCAGGGATTGTCT+TGG | + | chr3.3:80965668-80965687 | None:intergenic | 45.0% | |
| ATGATGAGGAGGATGGTGAA+TGG | - | chr3.3:80965875-80965894 | MS.gene049179:intron | 45.0% | |
| CACATTCAAGGCCATTCTGA+AGG | + | chr3.3:80965312-80965331 | None:intergenic | 45.0% | |
| CTCCACTTTCCCTTATAAGC+TGG | + | chr3.3:80965979-80965998 | None:intergenic | 45.0% | |
| CTTCTACGAATCGTTCGATG+AGG | - | chr3.3:80964211-80964230 | MS.gene049179:intron | 45.0% | |
| GAAGAAGCTGAGAAACCTGA+AGG | - | chr3.3:80965790-80965809 | MS.gene049179:intron | 45.0% | |
| GATCAGGGATTGTCTTGGAA+GGG | + | chr3.3:80965663-80965682 | None:intergenic | 45.0% | |
| GGCAACAAAACCTGAGGATT+GGG | - | chr3.3:80965852-80965871 | MS.gene049179:intron | 45.0% | |
| GTCTTGGAAGGGATAAGAGA+AGG | + | chr3.3:80965652-80965671 | None:intergenic | 45.0% | |
| GTTTGTCAGATGGGACAGAA+GGG | + | chr3.3:80965522-80965541 | None:intergenic | 45.0% | |
| TCTGGGTCATCTATTTCCTC+TGG | + | chr3.3:80965832-80965851 | None:intergenic | 45.0% | |
| TCTTTAGGCTCATATTCGGC+GGG | - | chr3.3:80966654-80966673 | MS.gene049179:intron | 45.0% | |
| TGAGAAACCTGAAGGATGGT+TGG | - | chr3.3:80965798-80965817 | MS.gene049179:intron | 45.0% | |
| TGATGAGGAGGATGGTGAAT+GGG | - | chr3.3:80965876-80965895 | MS.gene049179:intron | 45.0% | |
| TGGAATTCTTGCATCCGTTG+TGG | - | chr3.3:80966613-80966632 | MS.gene049179:intron | 45.0% | |
| TGTCTGCGATCTTGTACAAG+AGG | + | chr3.3:80966408-80966427 | None:intergenic | 45.0% | |
| TTCATTCTCTCCACCAGCTT+GGG | + | chr3.3:80966840-80966859 | None:intergenic | 45.0% | |
| TTTGAGCCTATTGCTGCCAT+TGG | - | chr3.3:80966090-80966109 | MS.gene049179:intron | 45.0% | |
| TTTGTCAGATGGGACAGAAG+GGG | + | chr3.3:80965521-80965540 | None:intergenic | 45.0% | |
| ! | ATCTTTCTGGCCACTTAGGA+AGG | + | chr3.3:80966434-80966453 | None:intergenic | 45.0% |
| ! | CTTCAGAATGGCCTTGAATG+TGG | - | chr3.3:80965310-80965329 | MS.gene049179:CDS | 45.0% |
| ! | GTCTTTTCTTCTGCAGGCTA+AGG | - | chr3.3:80966766-80966785 | MS.gene049179:intron | 45.0% |
| ! | TAAGCTGGGTTCCTTTTCGT+TGG | + | chr3.3:80965964-80965983 | None:intergenic | 45.0% |
| ! | TAAGGGTATATGGAAGCCTC+GGG | - | chr3.3:80966026-80966045 | MS.gene049179:intron | 45.0% |
| ! | TCTTTCTGGCCACTTAGGAA+GGG | + | chr3.3:80966433-80966452 | None:intergenic | 45.0% |
| ! | TTTGAGACTCGCCTTCAGAA+TGG | - | chr3.3:80965298-80965317 | MS.gene049179:CDS | 45.0% |
| ! | TTTTCTTCTGCAGGCTAAGG+TGG | - | chr3.3:80966769-80966788 | MS.gene049179:intron | 45.0% |
| !! | CTGGAAGCATTCTAAGAGTG+AGG | - | chr3.3:80965168-80965187 | MS.gene049179:CDS | 45.0% |
| !! | GGAAGCATTCTAAGAGTGAG+GGG | - | chr3.3:80965170-80965189 | MS.gene049179:CDS | 45.0% |
| !! | TGTTTTGGGTATCAGGTGTC+TGG | - | chr3.3:80965149-80965168 | MS.gene049179:CDS | 45.0% |
| AAACAGCCAATGCTCCACGT+AGG | - | chr3.3:80966879-80966898 | MS.gene049179:CDS | 50.0% | |
| AAAGGCTAACTTCCTGTCCG+AGG | - | chr3.3:80965615-80965634 | MS.gene049179:CDS | 50.0% | |
| AAGCTGTAAAGCCAGAGGAC+TGG | - | chr3.3:80965737-80965756 | MS.gene049179:CDS | 50.0% | |
| ACAGAAACTTCCCAAGCTGG+TGG | - | chr3.3:80966827-80966846 | MS.gene049179:CDS | 50.0% | |
| ACCTGAGGATTGGGATGATG+AGG | - | chr3.3:80965861-80965880 | MS.gene049179:intron | 50.0% | |
| ACTATGGCGTACTTCCTTGC+TGG | + | chr3.3:80965226-80965245 | None:intergenic | 50.0% | |
| AGCTGTAAAGCCAGAGGACT+GGG | - | chr3.3:80965738-80965757 | MS.gene049179:CDS | 50.0% | |
| AGCTTCTGGGTCAGGAATCT+TGG | + | chr3.3:80965722-80965741 | None:intergenic | 50.0% | |
| AGTGGAAGAGGCCAACGAAA+AGG | - | chr3.3:80965950-80965969 | MS.gene049179:intron | 50.0% | |
| ATGTTTGGTCCAGACAGGTG+CGG | - | chr3.3:80965415-80965434 | MS.gene049179:CDS | 50.0% | |
| CTGTCATGTTTGGTCCAGAC+AGG | - | chr3.3:80965410-80965429 | MS.gene049179:CDS | 50.0% | |
| CTTCATTCTCTCCACCAGCT+TGG | + | chr3.3:80966841-80966860 | None:intergenic | 50.0% | |
| GAAACAGAAGGCTGAAGAGG+AGG | - | chr3.3:80966236-80966255 | MS.gene049179:intron | 50.0% | |
| GAACGAAGGAAGAGGAAGCA+AGG | + | chr3.3:80964083-80964102 | None:intergenic | 50.0% | |
| GAAGGCGAGTCTCAAACTGA+AGG | + | chr3.3:80965294-80965313 | None:intergenic | 50.0% | |
| GAGAGTGGTTGGAAACCCAA+GGG | - | chr3.3:80965364-80965383 | MS.gene049179:CDS | 50.0% | |
| GATTGGGATGATGAGGAGGA+TGG | - | chr3.3:80965868-80965887 | MS.gene049179:intron | 50.0% | |
| GCAGACATTCCCTTCCTAAG+TGG | - | chr3.3:80966421-80966440 | MS.gene049179:intron | 50.0% | |
| GCAGCAATAGGCTCAAAGTC+AGG | + | chr3.3:80966087-80966106 | None:intergenic | 50.0% | |
| GGATCAGGGATTGTCTTGGA+AGG | + | chr3.3:80965664-80965683 | None:intergenic | 50.0% | |
| TACCGCATCGTCAGCTTCAT+CGG | + | chr3.3:80964112-80964131 | None:intergenic | 50.0% | |
| TATCTTCAACCCCAGGAGAG+TGG | - | chr3.3:80965349-80965368 | MS.gene049179:CDS | 50.0% | |
| TCCTCATCATCCCAATCCTC+AGG | + | chr3.3:80965865-80965884 | None:intergenic | 50.0% | |
| TCGTCATCCAACCATCCTTC+AGG | + | chr3.3:80965808-80965827 | None:intergenic | 50.0% | |
| TGACGGCGAGGAGAAGAAAA+AGG | - | chr3.3:80965597-80965616 | MS.gene049179:CDS | 50.0% | |
| TGAGGATTGGGATGATGAGG+AGG | - | chr3.3:80965864-80965883 | MS.gene049179:intron | 50.0% | |
| TTCCGATGAAGCTGACGATG+CGG | - | chr3.3:80964107-80964126 | MS.gene049179:CDS | 50.0% | |
| TTGTCAGATGGGACAGAAGG+GGG | + | chr3.3:80965520-80965539 | None:intergenic | 50.0% | |
| ! | CAGAATGGCCTTGAATGTGG+TGG | - | chr3.3:80965313-80965332 | MS.gene049179:CDS | 50.0% |
| ! | CAGGGGCTGATTCACACTTT+GGG | + | chr3.3:80965921-80965940 | None:intergenic | 50.0% |
| ! | GAGAATTCTAGTTGACGGCG+AGG | - | chr3.3:80965585-80965604 | MS.gene049179:CDS | 50.0% |
| ! | TTCATCGGAAGCGTGAACGA+AGG | + | chr3.3:80964097-80964116 | None:intergenic | 50.0% |
| !! | AGTGAGGGGCACGATGATTT+TGG | - | chr3.3:80965184-80965203 | MS.gene049179:CDS | 50.0% |
| !! | CCTCTGGCTTTACAGCTTCT+GGG | + | chr3.3:80965735-80965754 | None:intergenic | 50.0% |
| !! | TCCTCTGGCTTTACAGCTTC+TGG | + | chr3.3:80965736-80965755 | None:intergenic | 50.0% |
| !!! | CCTCAGGTTTTGTTGCCTCT+GGG | + | chr3.3:80965849-80965868 | None:intergenic | 50.0% |
| !!! | TCCTCAGGTTTTGTTGCCTC+TGG | + | chr3.3:80965850-80965869 | None:intergenic | 50.0% |
| AAAGCCAGAGGACTGGGATG+AGG | - | chr3.3:80965744-80965763 | MS.gene049179:CDS | 55.0% | |
| ATGGTTGGATGACGAGCCAG+AGG | - | chr3.3:80965813-80965832 | MS.gene049179:intron | 55.0% | |
| CAGAAGGGGGGAACTTGAGA+TGG | + | chr3.3:80965507-80965526 | None:intergenic | 55.0% | |
| CCAAAGTGTGAATCAGCCCC+TGG | - | chr3.3:80965919-80965938 | MS.gene049179:intron | 55.0% | |
| CCCAGAAGCTGTAAAGCCAG+AGG | - | chr3.3:80965732-80965751 | MS.gene049179:CDS | 55.0% | |
| CCCAGAGGCAACAAAACCTG+AGG | - | chr3.3:80965846-80965865 | MS.gene049179:intron | 55.0% | |
| CGCACAGAAACTTCCCAAGC+TGG | - | chr3.3:80966824-80966843 | MS.gene049179:CDS | 55.0% | |
| CTGGGATGAGGATGCACCTA+TGG | - | chr3.3:80965756-80965775 | MS.gene049179:CDS | 55.0% | |
| CTGGTAGCCAGCAATACCCT+CGG | + | chr3.3:80966274-80966293 | None:intergenic | 55.0% | |
| GCTCAAAATCCTCCTCGGAC+AGG | + | chr3.3:80965630-80965649 | None:intergenic | 55.0% | |
| GGAGAGTGGTTGGAAACCCA+AGG | - | chr3.3:80965363-80965382 | MS.gene049179:CDS | 55.0% | |
| GGCTTTACAGCTTCTGGGTC+AGG | + | chr3.3:80965730-80965749 | None:intergenic | 55.0% | |
| GGGTTTCCAACCACTCTCCT+GGG | + | chr3.3:80965362-80965381 | None:intergenic | 55.0% | |
| GGTTACCCCTATCGCTATCG+CGG | - | chr3.3:80964044-80964063 | MS.gene049179:CDS | 55.0% | |
| GGTTTCCAACCACTCTCCTG+GGG | + | chr3.3:80965361-80965380 | None:intergenic | 55.0% | |
| TCTTCCACTCACCACAGCCA+GGG | + | chr3.3:80965939-80965958 | None:intergenic | 55.0% | |
| TCTTCTGCAGGCTAAGGTGG+AGG | - | chr3.3:80966772-80966791 | MS.gene049179:intron | 55.0% | |
| TGGGTTTCCAACCACTCTCC+TGG | + | chr3.3:80965363-80965382 | None:intergenic | 55.0% | |
| TGTCAGATGGGACAGAAGGG+GGG | + | chr3.3:80965519-80965538 | None:intergenic | 55.0% | |
| TGTTTGGTCCAGACAGGTGC+GGG | - | chr3.3:80965416-80965435 | MS.gene049179:CDS | 55.0% | |
| TTCAACCCCAGGAGAGTGGT+TGG | - | chr3.3:80965353-80965372 | MS.gene049179:CDS | 55.0% | |
| ! | CCAGGGGCTGATTCACACTT+TGG | + | chr3.3:80965922-80965941 | None:intergenic | 55.0% |
| ! | GGAAGCGTGAACGAAGGAAG+AGG | + | chr3.3:80964091-80964110 | None:intergenic | 55.0% |
| ! | TCTGGGTTTGGAATCTCCCG+AGG | + | chr3.3:80966045-80966064 | None:intergenic | 55.0% |
| CAGCCAATGCTCCACGTAGG+AGG | - | chr3.3:80966882-80966901 | MS.gene049179:CDS | 60.0% | |
| CAGGTGCGGGGCAACAAACA+AGG | - | chr3.3:80965429-80965448 | MS.gene049179:CDS | 60.0% | |
| CTCTTCCACTCACCACAGCC+AGG | + | chr3.3:80965940-80965959 | None:intergenic | 60.0% | |
| CTGGCTGTGGTGAGTGGAAG+AGG | - | chr3.3:80965938-80965957 | MS.gene049179:intron | 60.0% | |
| CTTCCACTCACCACAGCCAG+GGG | + | chr3.3:80965938-80965957 | None:intergenic | 60.0% | |
| GCATCCTCATCCCAGTCCTC+TGG | + | chr3.3:80965751-80965770 | None:intergenic | 60.0% | |
| GCTCTCTCGTCCCAGTCTTC+TGG | + | chr3.3:80965700-80965719 | None:intergenic | 60.0% | |
| GGCTAACTTCCTGTCCGAGG+AGG | - | chr3.3:80965618-80965637 | MS.gene049179:CDS | 60.0% | |
| GTTTGGTCCAGACAGGTGCG+GGG | - | chr3.3:80965417-80965436 | MS.gene049179:CDS | 60.0% | |
| TCTCGCTTTGGCCTCCTACG+TGG | + | chr3.3:80966896-80966915 | None:intergenic | 60.0% | |
| TGGCCTCCTACGTGGAGCAT+TGG | + | chr3.3:80966888-80966907 | None:intergenic | 60.0% | |
| TGTGAATCAGCCCCTGGCTG+TGG | - | chr3.3:80965925-80965944 | MS.gene049179:intron | 60.0% | |
| TTTGTTGCCCCGCACCTGTC+TGG | + | chr3.3:80965427-80965446 | None:intergenic | 60.0% | |
| ! | GAGCACCGCGATAGCGATAG+GGG | + | chr3.3:80964052-80964071 | None:intergenic | 60.0% |
| !! | AGGAGCACCGCGATAGCGAT+AGG | + | chr3.3:80964054-80964073 | None:intergenic | 60.0% |
| !! | CGAGGGTATTGCTGGCTACC+AGG | - | chr3.3:80966272-80966291 | MS.gene049179:intron | 60.0% |
| !! | GCTGAGTCCGAGGGTATTGC+TGG | - | chr3.3:80966264-80966283 | MS.gene049179:intron | 60.0% |
| !! | GGAGCACCGCGATAGCGATA+GGG | + | chr3.3:80964053-80964072 | None:intergenic | 60.0% |
| GAGGCAGCAGCTGAGTCCGA+GGG | - | chr3.3:80966255-80966274 | MS.gene049179:intron | 65.0% | |
| GCAGGCTAAGGTGGAGGCGA+AGG | - | chr3.3:80966778-80966797 | MS.gene049179:intron | 65.0% | |
| CAGCCCCTGGCTGTGGTGAG+TGG | - | chr3.3:80965932-80965951 | MS.gene049179:intron | 70.0% | |
| GGAGGCAGCAGCTGAGTCCG+AGG | - | chr3.3:80966254-80966273 | MS.gene049179:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 80964030 | 80966922 | 80964030 | ID=MS.gene049179 |
| chr3.3 | mRNA | 80964030 | 80966922 | 80964030 | ID=MS.gene049179.t1;Parent=MS.gene049179 |
| chr3.3 | exon | 80966824 | 80966922 | 80966824 | ID=MS.gene049179.t1.exon1;Parent=MS.gene049179.t1 |
| chr3.3 | CDS | 80966824 | 80966922 | 80966824 | ID=cds.MS.gene049179.t1;Parent=MS.gene049179.t1 |
| chr3.3 | exon | 80966674 | 80966743 | 80966674 | ID=MS.gene049179.t1.exon2;Parent=MS.gene049179.t1 |
| chr3.3 | CDS | 80966674 | 80966743 | 80966674 | ID=cds.MS.gene049179.t1;Parent=MS.gene049179.t1 |
| chr3.3 | exon | 80964659 | 80965788 | 80964659 | ID=MS.gene049179.t1.exon3;Parent=MS.gene049179.t1 |
| chr3.3 | CDS | 80964659 | 80965788 | 80964659 | ID=cds.MS.gene049179.t1;Parent=MS.gene049179.t1 |
| chr3.3 | exon | 80964490 | 80964561 | 80964490 | ID=MS.gene049179.t1.exon4;Parent=MS.gene049179.t1 |
| chr3.3 | CDS | 80964490 | 80964561 | 80964490 | ID=cds.MS.gene049179.t1;Parent=MS.gene049179.t1 |
| chr3.3 | exon | 80964267 | 80964380 | 80964267 | ID=MS.gene049179.t1.exon5;Parent=MS.gene049179.t1 |
| chr3.3 | CDS | 80964267 | 80964380 | 80964267 | ID=cds.MS.gene049179.t1;Parent=MS.gene049179.t1 |
| chr3.3 | exon | 80964030 | 80964170 | 80964030 | ID=MS.gene049179.t1.exon6;Parent=MS.gene049179.t1 |
| chr3.3 | CDS | 80964030 | 80964170 | 80964030 | ID=cds.MS.gene049179.t1;Parent=MS.gene049179.t1 |
| Gene Sequence |
| Protein sequence |
