AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41637

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41637.t1 MTR_3g098530 95.956 272 10 1 1 271 1 272 0.0 530
MS.gene41637.t1 MTR_8g096180 75.431 232 57 0 40 271 21 252 1.17e-134 380
MS.gene41637.t1 MTR_8g096170 74.026 231 60 0 40 270 24 254 2.13e-131 372
MS.gene41637.t1 MTR_8g096180 72.314 242 57 1 40 271 21 262 3.71e-131 372
MS.gene41637.t1 MTR_1g032580 37.975 237 138 4 39 270 5 237 1.20e-54 177
MS.gene41637.t1 MTR_1g032580 38.421 190 111 3 86 270 1 189 9.10e-46 152
MS.gene41637.t1 MTR_1g022185 31.224 237 152 6 34 262 7 240 2.08e-29 112
MS.gene41637.t1 MTR_4g105450 34.591 159 102 2 65 222 68 225 1.15e-25 102
MS.gene41637.t1 MTR_4g105460 32.515 163 108 2 65 226 70 231 2.14e-24 99.0
MS.gene41637.t1 MTR_7g087500 28.986 207 131 5 64 262 42 240 3.06e-23 97.1
MS.gene41637.t1 MTR_3g097350 30.476 210 132 4 66 261 247 456 5.53e-22 95.5
MS.gene41637.t1 MTR_3g117090 32.794 247 145 9 35 261 62 307 7.39e-22 95.1
MS.gene41637.t1 MTR_3g117090 32.389 247 146 8 35 261 62 307 7.66e-22 95.1
MS.gene41637.t1 MTR_3g112150 31.797 217 129 6 68 266 93 308 1.00e-21 94.7
MS.gene41637.t1 MTR_4g070720 33.333 219 127 7 61 261 89 306 1.81e-21 94.0
MS.gene41637.t1 MTR_1g022480 29.856 278 173 11 10 266 51 327 9.26e-21 92.0
MS.gene41637.t1 MTR_1g022480 29.856 278 173 11 10 266 51 327 9.49e-21 92.0
MS.gene41637.t1 MTR_1g022480 29.856 278 173 11 10 266 51 327 9.65e-21 92.0
MS.gene41637.t1 MTR_1g022480 32.558 215 126 8 70 266 30 243 4.16e-20 89.7
MS.gene41637.t1 MTR_1g104540 27.778 198 137 3 43 235 12 208 5.25e-20 89.0
MS.gene41637.t1 MTR_5g021050 31.535 241 143 8 43 263 50 288 5.52e-20 89.4
MS.gene41637.t1 MTR_5g021050 31.535 241 143 8 43 263 50 288 6.41e-20 89.4
MS.gene41637.t1 MTR_3g074050 28.139 231 148 8 40 261 22 243 6.59e-20 87.8
MS.gene41637.t1 MTR_5g062310 28.000 175 122 3 64 237 44 215 7.66e-20 87.8
MS.gene41637.t1 MTR_8g095360 29.153 295 168 11 3 261 97 386 9.15e-20 89.0
MS.gene41637.t1 MTR_7g056587 29.804 255 150 10 28 261 86 332 9.40e-20 89.0
MS.gene41637.t1 MTR_7g056587 29.804 255 150 10 28 261 72 318 1.04e-19 89.0
MS.gene41637.t1 MTR_7g056587 29.804 255 150 10 28 261 64 310 1.08e-19 89.0
MS.gene41637.t1 MTR_7g056587 29.804 255 150 10 28 261 72 318 1.14e-19 88.6
MS.gene41637.t1 MTR_3g074050 27.706 231 150 8 40 261 22 244 1.92e-19 86.7
MS.gene41637.t1 MTR_2g031610 29.524 210 132 6 66 261 142 349 3.10e-19 87.0
MS.gene41637.t1 MTR_8g077700 28.846 208 141 6 62 265 39 243 7.15e-19 84.3
MS.gene41637.t1 MTR_3g117100 32.093 215 127 7 65 261 107 320 7.16e-19 86.3
MS.gene41637.t1 MTR_8g076880 31.507 219 129 7 62 261 73 289 7.89e-19 86.3
MS.gene41637.t1 MTR_4g033435 29.911 224 120 7 63 261 266 477 9.37e-19 85.9
MS.gene41637.t1 MTR_4g070810 31.513 238 143 8 43 261 81 317 2.06e-18 85.1
MS.gene41637.t1 MTR_8g077700 28.846 208 141 6 62 265 67 271 2.42e-18 83.6
MS.gene41637.t1 MTR_7g070480 27.830 212 138 5 63 261 95 304 1.07e-17 82.4
MS.gene41637.t1 MTR_4g013300 28.372 215 128 7 66 261 123 330 1.89e-17 82.0
MS.gene41637.t1 MTR_5g012460 29.778 225 125 5 62 261 109 325 1.89e-17 82.0
MS.gene41637.t1 MTR_3g010190 29.555 247 153 8 36 263 71 315 7.93e-17 80.1
MS.gene41637.t1 MTR_4g105460 34.307 137 87 3 65 200 70 204 1.77e-16 76.3
MS.gene41637.t1 MTR_8g071000 29.779 272 166 12 10 261 35 301 2.78e-16 79.0
MS.gene41637.t1 MTR_4g033435 28.079 203 123 6 63 247 266 463 1.23e-15 76.6
MS.gene41637.t1 MTR_4g070790 28.311 219 136 6 62 261 78 294 4.23e-14 72.0
MS.gene41637.t1 MTR_7g056587 29.744 195 116 6 86 261 1 193 6.99e-14 71.6
MS.gene41637.t1 MTR_5g062310 25.490 153 110 3 86 237 1 150 1.36e-13 69.3
MS.gene41637.t1 MTR_1g069915 28.507 221 129 9 61 261 142 353 2.46e-13 69.7
MS.gene41637.t1 MTR_3g074050 27.174 184 118 7 86 261 1 176 4.32e-13 67.8
MS.gene41637.t1 MTR_6g015645 32.484 157 90 6 120 261 27 182 5.14e-12 65.9
MS.gene41637.t1 MTR_3g060670 25.822 213 124 7 68 257 33 234 1.48e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41637.t1 AT1G01630 65.368 231 80 0 41 271 25 255 2.92e-117 337
MS.gene41637.t1 AT1G14820 38.333 240 139 4 36 270 1 236 3.44e-49 163
MS.gene41637.t1 AT1G14820 39.815 216 124 3 60 270 9 223 6.16e-47 157
MS.gene41637.t1 AT1G14820 39.815 216 124 3 60 270 9 223 6.16e-47 157
MS.gene41637.t1 AT4G08690 30.531 226 150 5 40 261 16 238 6.90e-29 111
MS.gene41637.t1 AT4G08690 30.531 226 150 5 40 261 16 238 6.90e-29 111
MS.gene41637.t1 AT4G08690 30.531 226 150 5 40 261 16 238 6.90e-29 111
MS.gene41637.t1 AT1G75170 30.864 243 148 8 31 265 14 244 1.07e-26 105
MS.gene41637.t1 AT1G75170 30.864 243 148 8 31 265 14 244 1.07e-26 105
MS.gene41637.t1 AT1G22180 30.531 226 150 6 41 262 20 242 4.62e-24 99.0
MS.gene41637.t1 AT1G22180 30.531 226 150 6 41 262 20 242 4.62e-24 99.0
MS.gene41637.t1 AT4G36640 29.612 206 138 5 64 265 39 241 1.36e-23 97.4
MS.gene41637.t1 AT4G36640 29.612 206 138 5 64 265 39 241 1.36e-23 97.4
MS.gene41637.t1 AT5G63060 33.742 163 106 2 65 226 36 197 5.13e-23 94.4
MS.gene41637.t1 AT5G63060 33.742 163 106 2 65 226 71 232 7.54e-23 94.7
MS.gene41637.t1 AT4G34580 33.180 217 125 8 64 261 83 298 8.85e-22 94.7
MS.gene41637.t1 AT4G34580 33.180 217 125 8 64 261 83 298 8.85e-22 94.7
MS.gene41637.t1 AT4G39180 31.696 224 134 7 61 266 89 311 7.52e-21 92.0
MS.gene41637.t1 AT4G39180 31.696 224 134 7 61 266 89 311 7.52e-21 92.0
MS.gene41637.t1 AT4G39180 31.696 224 134 7 61 266 89 311 7.97e-21 92.0
MS.gene41637.t1 AT4G36490 31.050 219 130 7 62 261 72 288 1.63e-20 91.3
MS.gene41637.t1 AT1G30690 30.769 208 133 6 63 261 217 422 2.37e-20 90.9
MS.gene41637.t1 AT1G30690 30.769 208 133 6 63 261 217 422 2.37e-20 90.9
MS.gene41637.t1 AT2G16380 34.259 216 122 8 65 261 84 298 4.19e-20 90.1
MS.gene41637.t1 AT2G16380 34.259 216 122 8 65 261 84 298 4.19e-20 90.1
MS.gene41637.t1 AT2G18180 31.222 221 131 7 62 263 75 293 6.22e-20 89.4
MS.gene41637.t1 AT4G09160 28.090 267 154 9 21 261 267 521 6.31e-20 89.7
MS.gene41637.t1 AT4G09160 28.090 267 154 9 21 261 267 521 6.43e-20 89.7
MS.gene41637.t1 AT2G18180 31.222 221 131 7 62 263 75 293 6.97e-20 89.4
MS.gene41637.t1 AT4G09160 28.090 267 154 9 21 261 292 546 7.90e-20 89.4
MS.gene41637.t1 AT2G21540 31.674 221 132 7 61 263 88 307 1.32e-19 88.6
MS.gene41637.t1 AT2G21540 31.674 221 132 7 61 263 88 307 1.32e-19 88.6
MS.gene41637.t1 AT2G21540 31.674 221 132 7 61 263 88 307 1.32e-19 88.6
MS.gene41637.t1 AT2G21540 31.674 221 132 7 61 263 88 307 1.32e-19 88.6
MS.gene41637.t1 AT2G21540 31.674 221 132 7 61 263 88 307 1.32e-19 88.6
MS.gene41637.t1 AT2G21540 31.674 221 132 7 61 263 88 307 1.32e-19 88.6
MS.gene41637.t1 AT2G21520 29.455 275 168 9 10 261 49 320 1.47e-19 88.6
MS.gene41637.t1 AT2G21520 29.455 275 168 9 10 261 53 324 1.56e-19 88.6
MS.gene41637.t1 AT2G21520 29.455 275 168 9 10 261 53 324 1.56e-19 88.6
MS.gene41637.t1 AT4G39170 30.882 272 166 9 10 261 49 318 2.38e-19 87.8
MS.gene41637.t1 AT4G39170 30.882 272 166 9 10 261 49 318 2.57e-19 87.8
MS.gene41637.t1 AT2G18180 31.132 212 125 7 71 263 13 222 3.57e-19 87.0
MS.gene41637.t1 AT2G18180 31.132 212 125 7 71 263 13 222 4.07e-19 87.0
MS.gene41637.t1 AT1G19650 31.933 238 142 7 43 261 78 314 6.41e-19 86.3
MS.gene41637.t1 AT1G19650 32.719 217 126 7 64 261 99 314 6.75e-19 86.7
MS.gene41637.t1 AT1G19650 30.932 236 142 7 44 261 10 242 9.11e-19 85.9
MS.gene41637.t1 AT1G05370 30.899 178 122 1 62 239 38 214 9.25e-19 85.5
MS.gene41637.t1 AT1G75370 32.218 239 140 8 43 261 87 323 2.97e-18 84.7
MS.gene41637.t1 AT1G75370 32.218 239 140 8 43 261 87 323 3.86e-18 84.3
MS.gene41637.t1 AT5G47510 30.455 220 134 6 62 263 44 262 4.28e-17 80.5
MS.gene41637.t1 AT5G47510 30.455 220 134 6 62 263 45 263 4.61e-17 80.5
MS.gene41637.t1 AT5G47510 30.455 220 134 6 62 263 45 263 4.88e-17 80.1
MS.gene41637.t1 AT1G55690 31.905 210 123 9 71 261 104 312 6.95e-17 80.5
MS.gene41637.t1 AT1G55690 31.905 210 123 9 71 261 104 312 8.18e-17 80.5
MS.gene41637.t1 AT1G55690 31.905 210 123 9 71 261 104 312 8.18e-17 80.5
MS.gene41637.t1 AT1G55690 31.905 210 123 9 71 261 104 312 8.18e-17 80.5
MS.gene41637.t1 AT1G55690 31.905 210 123 9 71 261 104 312 8.18e-17 80.5
MS.gene41637.t1 AT1G72160 29.048 210 133 7 66 261 164 371 1.67e-16 79.3
MS.gene41637.t1 AT1G22180 28.333 180 123 5 86 262 1 177 1.74e-16 77.4
MS.gene41637.t1 AT1G22180 28.333 180 123 5 86 262 1 177 1.74e-16 77.4
MS.gene41637.t1 AT1G75170 33.117 154 91 5 116 262 10 158 3.33e-16 75.9
MS.gene41637.t1 AT3G24840 28.916 249 143 10 41 263 75 315 4.87e-16 78.2
MS.gene41637.t1 AT3G24840 28.916 249 143 10 41 263 75 315 4.87e-16 78.2
MS.gene41637.t1 AT3G24840 28.916 249 143 10 41 263 75 315 4.87e-16 78.2
MS.gene41637.t1 AT3G24840 28.916 249 143 10 41 263 75 315 5.10e-16 78.2
MS.gene41637.t1 AT3G24840 28.916 249 143 10 41 263 75 315 5.10e-16 78.2
MS.gene41637.t1 AT3G24840 28.916 249 143 10 41 263 75 315 5.10e-16 78.2
MS.gene41637.t1 AT3G24840 28.916 249 143 10 41 263 75 315 5.10e-16 78.2
MS.gene41637.t1 AT4G36640 27.174 184 127 5 86 265 1 181 6.41e-16 75.5
MS.gene41637.t1 AT3G22410 28.061 196 133 5 46 235 7 200 1.13e-15 76.6
MS.gene41637.t1 AT3G51670 27.273 209 137 5 66 261 82 288 1.51e-15 76.3
MS.gene41637.t1 AT2G18180 29.949 197 117 7 86 263 1 195 7.21e-14 71.2
MS.gene41637.t1 AT2G16380 31.443 194 114 7 86 261 1 193 2.79e-13 69.7
MS.gene41637.t1 AT1G55840 26.556 241 132 9 50 257 12 240 2.87e-12 66.2
MS.gene41637.t1 AT5G47730 27.586 203 128 7 71 257 41 240 5.39e-12 65.5
MS.gene41637.t1 AT5G47730 27.586 203 128 7 71 257 41 240 5.39e-12 65.5
MS.gene41637.t1 AT1G55840 27.143 210 120 7 71 257 14 213 6.04e-12 65.1
MS.gene41637.t1 AT1G72150 26.484 219 132 10 63 261 253 462 3.28e-11 63.5

Find 60 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTATCTATTGCAGACATTA+AGG 0.206776 3.4:+88379074 MS.gene41637:CDS
AGTTCTCATGAGGCTGATTT+TGG 0.214151 3.4:-88377261 None:intergenic
GCAGCAAAAGCAACAGTTAT+AGG 0.238428 3.4:-88377899 None:intergenic
TAAAAGTGTTACCTTCTTCT+TGG 0.260617 3.4:-88379256 None:intergenic
CTTACATGTTTATGAAAGTA+TGG 0.278705 3.4:+88379202 MS.gene41637:CDS
TTCTCCATTTCATGTACTTT+AGG 0.284773 3.4:-88377778 None:intergenic
GAATCTTGTATTGGAACTAA+TGG 0.319714 3.4:-88379461 None:intergenic
ATTGGATTCAAAACATGAAT+TGG 0.341875 3.4:+88377163 MS.gene41637:CDS
AAGCCGCGACCCTTCTTCTA+AGG 0.343766 3.4:+88377292 MS.gene41637:CDS
AGTCAGCTCCCAGAGATATA+TGG 0.360943 3.4:+88379428 MS.gene41637:CDS
AAAATTCTTGTTCAAGATGA+TGG 0.385796 3.4:+88377206 MS.gene41637:CDS
AGATTACTATCCAGAGAGAT+TGG 0.387553 3.4:+88379155 MS.gene41637:CDS
ATTAATCAAGAATCTTGTAT+TGG 0.399694 3.4:-88379470 None:intergenic
CATACTTTCATAAACATGTA+AGG 0.403022 3.4:-88379201 None:intergenic
TGTTCCTAAAGTACATGAAA+TGG 0.412855 3.4:+88377774 MS.gene41637:CDS
GTATCTATTGCAGACATTAA+GGG 0.415933 3.4:+88379075 MS.gene41637:CDS
AGTTTGCCTCCATATATCTC+TGG 0.418208 3.4:-88379437 None:intergenic
TCAAGATGATGGAGCTTTGA+AGG 0.435484 3.4:+88377217 MS.gene41637:CDS
AATGCTGAATTCCCAGGCTC+AGG 0.439463 3.4:-88377143 None:intergenic
CAAGAAAAGATGTATGTTCA+AGG 0.455113 3.4:+88377857 MS.gene41637:CDS
TATTGCAGACATTAAGGGCT+GGG 0.457362 3.4:+88379080 MS.gene41637:CDS
TTGTTTGTTACCTTAGAAGA+AGG 0.464246 3.4:-88377302 None:intergenic
AACAACTTTCCCAATCTCTC+TGG 0.465287 3.4:-88379165 None:intergenic
GAATCCAATGCTGAATTCCC+AGG 0.487330 3.4:-88377149 None:intergenic
TGGTATTGTCATCAATGAAA+GGG 0.492868 3.4:-88379236 None:intergenic
TTGGTATTGTCATCAATGAA+AGG 0.500676 3.4:-88379237 None:intergenic
GAAACCGTGAGCCCTGAGCC+TGG 0.507130 3.4:+88377131 MS.gene41637:CDS
CTATTGCAGACATTAAGGGC+TGG 0.521375 3.4:+88379079 MS.gene41637:CDS
GATTACTATCCAGAGAGATT+GGG 0.526098 3.4:+88379156 MS.gene41637:CDS
TCGTGATTTAGATGTAGATA+AGG 0.528241 3.4:+88377742 MS.gene41637:CDS
TGTTCAAGGAGTGGATAAGA+AGG 0.530265 3.4:+88377871 MS.gene41637:CDS
TTCAAAACATGAATTGGCTA+AGG 0.531998 3.4:+88377169 MS.gene41637:CDS
TGGATAGTAATCTTGTAGAA+TGG 0.535897 3.4:-88379145 None:intergenic
TGGCTAAGGAAGAAACCAAT+GGG 0.545298 3.4:+88377183 MS.gene41637:CDS
ATGCTGAATTCCCAGGCTCA+GGG 0.548569 3.4:-88377142 None:intergenic
TAATGTGACAGGATGCCACC+AGG 0.550381 3.4:+88379039 MS.gene41637:intron
TGTTTGTTACCTTAGAAGAA+GGG 0.551270 3.4:-88377301 None:intergenic
TGATGACAATACCAAGAAGA+AGG 0.551378 3.4:+88379245 MS.gene41637:CDS
TATGCAAACAGCGACATTCG+CGG 0.552322 3.4:+88379105 MS.gene41637:CDS
TGAGCCTGGGAATTCAGCAT+TGG 0.553795 3.4:+88377145 MS.gene41637:CDS
AGATCGTCAGGTATCTCTGA+AGG 0.558116 3.4:-88377830 None:intergenic
ATTCCCAGGCTCAGGGCTCA+CGG 0.559765 3.4:-88377135 None:intergenic
AGCGACATTCGCGGTTACCT+CGG 0.560343 3.4:+88379114 MS.gene41637:CDS
GTTTGCCTCCATATATCTCT+GGG 0.573143 3.4:-88379436 None:intergenic
AAACCGTGAGCCCTGAGCCT+GGG 0.577698 3.4:+88377132 MS.gene41637:CDS
AGAAAATCATTTGTTCCAAG+TGG 0.582982 3.4:+88377797 MS.gene41637:CDS
AAAGATGTATGTTCAAGGAG+TGG 0.599654 3.4:+88377862 MS.gene41637:CDS
TTACCTTAGAAGAAGGGTCG+CGG 0.603865 3.4:-88377295 None:intergenic
TTGGCTAAGGAAGAAACCAA+TGG 0.604471 3.4:+88377182 MS.gene41637:CDS
ATTGCAGACATTAAGGGCTG+GGG 0.606164 3.4:+88379081 MS.gene41637:CDS
GATCGTCAGGTATCTCTGAA+GGG 0.611116 3.4:-88377829 None:intergenic
TCATAAACATGTAAGGTGCA+TGG 0.614836 3.4:-88379194 None:intergenic
ATCGTCAGGTATCTCTGAAG+GGG 0.622595 3.4:-88377828 None:intergenic
GAAGGGGATACAGAACCACT+TGG 0.629494 3.4:-88377812 None:intergenic
TTTCAACAAGAGTTCTCATG+AGG 0.631501 3.4:-88377271 None:intergenic
AATGTGACAGGATGCCACCA+GGG 0.634560 3.4:+88379040 MS.gene41637:intron
GTTCAAGGAGTGGATAAGAA+GGG 0.656937 3.4:+88377872 MS.gene41637:CDS
CAGCTCCCAGAGATATATGG+AGG 0.670836 3.4:+88379431 MS.gene41637:CDS
ATGTGACAGGATGCCACCAG+GGG 0.685775 3.4:+88379041 MS.gene41637:intron
GTAGAATGGTTAGAGCACCG+AGG 0.822792 3.4:-88379131 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATACAAAATTTATGA+TGG + chr3.4:88377593-88377612 MS.gene41637:intron 10.0%
!!! GTTATTTTTTTAATTCTAAA+AGG + chr3.4:88378423-88378442 MS.gene41637:intron 10.0%
!!! AAACATTTTCAAAACAAAAA+TGG + chr3.4:88377923-88377942 MS.gene41637:CDS 15.0%
!!! AAATTTATCTTTTTTTACAC+AGG - chr3.4:88378651-88378670 None:intergenic 15.0%
!!! TTCTTTATAAAATTTGCTTT+AGG + chr3.4:88378447-88378466 MS.gene41637:intron 15.0%
!!! TTTTTTCGAACTAAATTTTT+TGG + chr3.4:88377563-88377582 MS.gene41637:intron 15.0%
!! ATAAAACAAAACAAACATCA+TGG - chr3.4:88377619-88377638 None:intergenic 20.0%
!! ATGCTTATACAGTTTATATT+TGG + chr3.4:88378969-88378988 MS.gene41637:intron 20.0%
!! CTTATGTCTAAATTAACAAA+AGG - chr3.4:88378800-88378819 None:intergenic 20.0%
!!! AAATATTTTTTGTGTATGCA+GGG + chr3.4:88378858-88378877 MS.gene41637:intron 20.0%
!!! AACTAAATTGACTTATTTTG+AGG - chr3.4:88378259-88378278 None:intergenic 20.0%
!!! TAAATATTTTTTGTGTATGC+AGG + chr3.4:88378857-88378876 MS.gene41637:intron 20.0%
!!! TGTTCAAGATTAGTTTATTT+TGG + chr3.4:88377442-88377461 MS.gene41637:intron 20.0%
!!! TTTCTAAAAAGTCAAACTTT+GGG - chr3.4:88377528-88377547 None:intergenic 20.0%
!!! TTTTCAAAACAAAAATGGTT+TGG + chr3.4:88377928-88377947 MS.gene41637:CDS 20.0%
!!! TTTTCTAAAAAGTCAAACTT+TGG - chr3.4:88377529-88377548 None:intergenic 20.0%
!!! TTTTGATAAAACAGTGATAA+CGG + chr3.4:88377366-88377385 MS.gene41637:intron 20.0%
! AAAATTCTTGTTCAAGATGA+TGG + chr3.4:88377206-88377225 MS.gene41637:CDS 25.0%
! AACTTTACAATTCTTCTTAC+TGG - chr3.4:88379005-88379024 None:intergenic 25.0%
! AATAAGCTGAAAACAACTTA+TGG - chr3.4:88378588-88378607 None:intergenic 25.0%
! ATTGGATTCAAAACATGAAT+TGG + chr3.4:88377163-88377182 MS.gene41637:CDS 25.0%
! CATACTTTCATAAACATGTA+AGG - chr3.4:88379204-88379223 None:intergenic 25.0%
! CTAATATGTGAAGTTATGTT+TGG + chr3.4:88378031-88378050 MS.gene41637:intron 25.0%
! CTTACATGTTTATGAAAGTA+TGG + chr3.4:88379202-88379221 MS.gene41637:CDS 25.0%
! TCCATAAATTCTCCAAAATA+GGG + chr3.4:88378154-88378173 MS.gene41637:intron 25.0%
! TGCATGAATTAATTAATGAG+AGG - chr3.4:88378931-88378950 None:intergenic 25.0%
! TTCCATAAATTCTCCAAAAT+AGG + chr3.4:88378153-88378172 MS.gene41637:intron 25.0%
! TTTGAAAATTGAGATGTTCT+AGG + chr3.4:88379318-88379337 MS.gene41637:intron 25.0%
!! AGACATCATATATATCCTTT+TGG + chr3.4:88378339-88378358 MS.gene41637:intron 25.0%
!! CAATATTTATCTAGCTTAGT+TGG + chr3.4:88378308-88378327 MS.gene41637:intron 25.0%
!! TATGTTGTTTATCCAAACAA+TGG + chr3.4:88378826-88378845 MS.gene41637:intron 25.0%
!!! ATTAATTTGTTTATCCCAAC+AGG + chr3.4:88378743-88378762 MS.gene41637:intron 25.0%
!!! ATTAGTTTGTTAACCATAAG+AGG - chr3.4:88378016-88378035 None:intergenic 25.0%
!!! GTTTTATTACAGTACTGATT+AGG + chr3.4:88377632-88377651 MS.gene41637:intron 25.0%
AAACTCATGTGAGACTATTT+GGG + chr3.4:88378533-88378552 MS.gene41637:intron 30.0%
AAATAAGTCAATCCAAACAC+AGG - chr3.4:88378495-88378514 None:intergenic 30.0%
AATAAGTCAATCCAAACACA+GGG - chr3.4:88378494-88378513 None:intergenic 30.0%
AGAAAATCATTTGTTCCAAG+TGG + chr3.4:88377797-88377816 MS.gene41637:CDS 30.0%
AGTGAAAAACAGATCCAAAT+CGG - chr3.4:88377487-88377506 None:intergenic 30.0%
AGTTGTAGTTGCAAAAAAAG+TGG - chr3.4:88377402-88377421 None:intergenic 30.0%
CAAGAAAAGATGTATGTTCA+AGG + chr3.4:88377857-88377876 MS.gene41637:CDS 30.0%
GAATCTTGTATTGGAACTAA+TGG - chr3.4:88379464-88379483 None:intergenic 30.0%
GATTTGAACTTAAGACCAAA+AGG - chr3.4:88378357-88378376 None:intergenic 30.0%
GGAATTGAATTGAACTTGAT+GGG + chr3.4:88377678-88377697 MS.gene41637:intron 30.0%
GTATCTATTGCAGACATTAA+GGG + chr3.4:88379075-88379094 MS.gene41637:CDS 30.0%
TAAACTCATGTGAGACTATT+TGG + chr3.4:88378532-88378551 MS.gene41637:intron 30.0%
TAGGTAGCAAATAGTTAGAT+TGG + chr3.4:88377657-88377676 MS.gene41637:intron 30.0%
TCGTGATTTAGATGTAGATA+AGG + chr3.4:88377742-88377761 MS.gene41637:CDS 30.0%
TGGAATTGAATTGAACTTGA+TGG + chr3.4:88377677-88377696 MS.gene41637:intron 30.0%
TGGATAGTAATCTTGTAGAA+TGG - chr3.4:88379148-88379167 None:intergenic 30.0%
TGGTATTGTCATCAATGAAA+GGG - chr3.4:88379239-88379258 None:intergenic 30.0%
TGTATCTATTGCAGACATTA+AGG + chr3.4:88379074-88379093 MS.gene41637:CDS 30.0%
TGTTCCTAAAGTACATGAAA+TGG + chr3.4:88377774-88377793 MS.gene41637:CDS 30.0%
TTCAAAACATGAATTGGCTA+AGG + chr3.4:88377169-88377188 MS.gene41637:CDS 30.0%
TTCTCCATTTCATGTACTTT+AGG - chr3.4:88377781-88377800 None:intergenic 30.0%
TTGGTATTGTCATCAATGAA+AGG - chr3.4:88379240-88379259 None:intergenic 30.0%
TTTATCATTGAGCCATTGTT+TGG - chr3.4:88378841-88378860 None:intergenic 30.0%
! GTTTTCATAAACTACCTGTT+GGG - chr3.4:88378760-88378779 None:intergenic 30.0%
! TGTTTGTTACCTTAGAAGAA+GGG - chr3.4:88377304-88377323 None:intergenic 30.0%
! TGTTTTCATAAACTACCTGT+TGG - chr3.4:88378761-88378780 None:intergenic 30.0%
! TTGAACAAGAATTTTCCCAT+TGG - chr3.4:88377201-88377220 None:intergenic 30.0%
! TTGTTTGTTACCTTAGAAGA+AGG - chr3.4:88377305-88377324 None:intergenic 30.0%
!! ACCCTATTTTGGAGAATTTA+TGG - chr3.4:88378158-88378177 None:intergenic 30.0%
!! ATTACTATGTTGTACCGATT+TGG + chr3.4:88377470-88377489 MS.gene41637:intron 30.0%
!! TAAAAGTGTTACCTTCTTCT+TGG - chr3.4:88379259-88379278 None:intergenic 30.0%
!! TTGGTCTTAAGTTCAAATCT+TGG + chr3.4:88378358-88378377 MS.gene41637:intron 30.0%
AAAGATGTATGTTCAAGGAG+TGG + chr3.4:88377862-88377881 MS.gene41637:CDS 35.0%
ACAACTAATAGCATCTCAAG+TGG - chr3.4:88377979-88377998 None:intergenic 35.0%
AGACTATTTGGGAGAGTTTA+AGG + chr3.4:88378544-88378563 MS.gene41637:intron 35.0%
AGATTACTATCCAGAGAGAT+TGG + chr3.4:88379155-88379174 MS.gene41637:CDS 35.0%
AGGTTTAAACTTCGGGATTT+AGG + chr3.4:88378220-88378239 MS.gene41637:intron 35.0%
CAACTAATAGCATCTCAAGT+GGG - chr3.4:88377978-88377997 None:intergenic 35.0%
CAATGCTTGAAATCCTCTTA+TGG + chr3.4:88378000-88378019 MS.gene41637:intron 35.0%
GATTACTATCCAGAGAGATT+GGG + chr3.4:88379156-88379175 MS.gene41637:CDS 35.0%
GGTTTAAACTTCGGGATTTA+GGG + chr3.4:88378221-88378240 MS.gene41637:intron 35.0%
TCATAAACATGTAAGGTGCA+TGG - chr3.4:88379197-88379216 None:intergenic 35.0%
TGATGACAATACCAAGAAGA+AGG + chr3.4:88379245-88379264 MS.gene41637:CDS 35.0%
TTTCAACAAGAGTTCTCATG+AGG - chr3.4:88377274-88377293 None:intergenic 35.0%
! CTAATCTTGAACAAAGTGCT+AGG - chr3.4:88377435-88377454 None:intergenic 35.0%
!! TTACAGTACTGATTAGGCTT+AGG + chr3.4:88377638-88377657 MS.gene41637:intron 35.0%
AAAATAGGGTCTGTTTGGAC+AGG + chr3.4:88378168-88378187 MS.gene41637:intron 40.0%
AAATAGGGTCTGTTTGGACA+GGG + chr3.4:88378169-88378188 MS.gene41637:intron 40.0%
AACAACTTTCCCAATCTCTC+TGG - chr3.4:88379168-88379187 None:intergenic 40.0%
AAGTTTAAACCTTGCTTGGG+TGG - chr3.4:88378212-88378231 None:intergenic 40.0%
AGCTTACCCAATAATGTGAC+AGG + chr3.4:88379028-88379047 MS.gene41637:intron 40.0%
AGTTTGCCTCCATATATCTC+TGG - chr3.4:88379440-88379459 None:intergenic 40.0%
CCAAGCAAGGTTTAAACTTC+GGG + chr3.4:88378213-88378232 MS.gene41637:intron 40.0%
CCCAAGCAAGGTTTAAACTT+CGG + chr3.4:88378212-88378231 MS.gene41637:intron 40.0%
CCGAAGTTTAAACCTTGCTT+GGG - chr3.4:88378215-88378234 None:intergenic 40.0%
GCAGCAAAAGCAACAGTTAT+AGG - chr3.4:88377902-88377921 None:intergenic 40.0%
GTAGTTGTGTGAGATCGTTT+AGG + chr3.4:88378078-88378097 MS.gene41637:intron 40.0%
GTTCAAGGAGTGGATAAGAA+GGG + chr3.4:88377872-88377891 MS.gene41637:CDS 40.0%
GTTTGCCTCCATATATCTCT+GGG - chr3.4:88379439-88379458 None:intergenic 40.0%
TATTGCAGACATTAAGGGCT+GGG + chr3.4:88379080-88379099 MS.gene41637:CDS 40.0%
TCTCCAAAATAGGGTCTGTT+TGG + chr3.4:88378163-88378182 MS.gene41637:intron 40.0%
TGGCATCCTGTCACATTATT+GGG - chr3.4:88379037-88379056 None:intergenic 40.0%
TGGCTAAGGAAGAAACCAAT+GGG + chr3.4:88377183-88377202 MS.gene41637:CDS 40.0%
TGTTCAAGGAGTGGATAAGA+AGG + chr3.4:88377871-88377890 MS.gene41637:CDS 40.0%
TTGGCTAAGGAAGAAACCAA+TGG + chr3.4:88377182-88377201 MS.gene41637:CDS 40.0%
TTTAGGCATCTTGACGTGTT+GGG + chr3.4:88378464-88378483 MS.gene41637:intron 40.0%
! GATACAAACTTTTCTTCCCC+TGG - chr3.4:88379060-88379079 None:intergenic 40.0%
! TGTCCAAACAGACCCTATTT+TGG - chr3.4:88378169-88378188 None:intergenic 40.0%
! TTGAATTGAACTTGATGGGC+AGG + chr3.4:88377682-88377701 MS.gene41637:intron 40.0%
! TTTTCTTGTGCAAGATCGTC+AGG - chr3.4:88377845-88377864 None:intergenic 40.0%
!! AGTTCTCATGAGGCTGATTT+TGG - chr3.4:88377264-88377283 None:intergenic 40.0%
!! TCAAGATGATGGAGCTTTGA+AGG + chr3.4:88377217-88377236 MS.gene41637:CDS 40.0%
AGATCGTCAGGTATCTCTGA+AGG - chr3.4:88377833-88377852 None:intergenic 45.0%
AGTCAATCCAAACACAGGGT+CGG - chr3.4:88378490-88378509 None:intergenic 45.0%
AGTCAGCTCCCAGAGATATA+TGG + chr3.4:88379428-88379447 MS.gene41637:CDS 45.0%
ATTGCAGACATTAAGGGCTG+GGG + chr3.4:88379081-88379100 MS.gene41637:CDS 45.0%
CCCGAAGTTTAAACCTTGCT+TGG - chr3.4:88378216-88378235 None:intergenic 45.0%
CTATTGCAGACATTAAGGGC+TGG + chr3.4:88379079-88379098 MS.gene41637:CDS 45.0%
CTTTAGGCATCTTGACGTGT+TGG + chr3.4:88378463-88378482 MS.gene41637:intron 45.0%
GAATCCAATGCTGAATTCCC+AGG - chr3.4:88377152-88377171 None:intergenic 45.0%
GATCGTCAGGTATCTCTGAA+GGG - chr3.4:88377832-88377851 None:intergenic 45.0%
GTGGCATCCTGTCACATTAT+TGG - chr3.4:88379038-88379057 None:intergenic 45.0%
TATGCAAACAGCGACATTCG+CGG + chr3.4:88379105-88379124 MS.gene41637:CDS 45.0%
TTACCTTAGAAGAAGGGTCG+CGG - chr3.4:88377298-88377317 None:intergenic 45.0%
! AATTGAACTTGATGGGCAGG+AGG + chr3.4:88377685-88377704 MS.gene41637:intron 45.0%
! ACAAACTTTTCTTCCCCTGG+TGG - chr3.4:88379057-88379076 None:intergenic 45.0%
! ATCGTCAGGTATCTCTGAAG+GGG - chr3.4:88377831-88377850 None:intergenic 45.0%
AATGCTGAATTCCCAGGCTC+AGG - chr3.4:88377146-88377165 None:intergenic 50.0%
AATGTGACAGGATGCCACCA+GGG + chr3.4:88379040-88379059 MS.gene41637:intron 50.0%
ATGCTGAATTCCCAGGCTCA+GGG - chr3.4:88377145-88377164 None:intergenic 50.0%
CAGCTCCCAGAGATATATGG+AGG + chr3.4:88379431-88379450 MS.gene41637:CDS 50.0%
GAAGGGGATACAGAACCACT+TGG - chr3.4:88377815-88377834 None:intergenic 50.0%
TAAACCTTGCTTGGGTGGCT+TGG - chr3.4:88378207-88378226 None:intergenic 50.0%
TAATGTGACAGGATGCCACC+AGG + chr3.4:88379039-88379058 MS.gene41637:intron 50.0%
TGAGCCTGGGAATTCAGCAT+TGG + chr3.4:88377145-88377164 MS.gene41637:CDS 50.0%
!! GTAGAATGGTTAGAGCACCG+AGG - chr3.4:88379134-88379153 None:intergenic 50.0%
AAGCCGCGACCCTTCTTCTA+AGG + chr3.4:88377292-88377311 MS.gene41637:CDS 55.0%
AGCGACATTCGCGGTTACCT+CGG + chr3.4:88379114-88379133 MS.gene41637:CDS 55.0%
ATGTGACAGGATGCCACCAG+GGG + chr3.4:88379041-88379060 MS.gene41637:intron 55.0%
AAACCGTGAGCCCTGAGCCT+GGG + chr3.4:88377132-88377151 MS.gene41637:CDS 60.0%
AGGGTCTGTTTGGACAGGGC+CGG + chr3.4:88378173-88378192 MS.gene41637:intron 60.0%
ATTCCCAGGCTCAGGGCTCA+CGG - chr3.4:88377138-88377157 None:intergenic 60.0%
TGTTGGGCCGACCCTGTGTT+TGG + chr3.4:88378480-88378499 MS.gene41637:intron 60.0%
AGGGCCAAGCCACCCAAGCA+AGG + chr3.4:88378200-88378219 MS.gene41637:intron 65.0%
GAAACCGTGAGCCCTGAGCC+TGG + chr3.4:88377131-88377150 MS.gene41637:CDS 65.0%
TTTGGACAGGGCCGGCCCAA+GGG + chr3.4:88378181-88378200 MS.gene41637:intron 65.0%
! GCTTGGGTGGCTTGGCCCTT+GGG - chr3.4:88378199-88378218 None:intergenic 65.0%
! TGCTTGGGTGGCTTGGCCCT+TGG - chr3.4:88378200-88378219 None:intergenic 65.0%
GTTTGGACAGGGCCGGCCCA+AGG + chr3.4:88378180-88378199 MS.gene41637:intron 70.0%
! GGGTGGCTTGGCCCTTGGGC+CGG - chr3.4:88378195-88378214 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 88377128 88379487 88377128 ID=MS.gene41637
chr3.4 mRNA 88377128 88379487 88377128 ID=MS.gene41637.t1;Parent=MS.gene41637
chr3.4 exon 88377128 88377313 88377128 ID=MS.gene41637.t1.exon1;Parent=MS.gene41637.t1
chr3.4 CDS 88377128 88377313 88377128 ID=cds.MS.gene41637.t1;Parent=MS.gene41637.t1
chr3.4 exon 88377704 88377962 88377704 ID=MS.gene41637.t1.exon2;Parent=MS.gene41637.t1
chr3.4 CDS 88377704 88377962 88377704 ID=cds.MS.gene41637.t1;Parent=MS.gene41637.t1
chr3.4 exon 88378879 88378915 88378879 ID=MS.gene41637.t1.exon3;Parent=MS.gene41637.t1
chr3.4 CDS 88378879 88378915 88378879 ID=cds.MS.gene41637.t1;Parent=MS.gene41637.t1
chr3.4 exon 88379050 88379266 88379050 ID=MS.gene41637.t1.exon4;Parent=MS.gene41637.t1
chr3.4 CDS 88379050 88379266 88379050 ID=cds.MS.gene41637.t1;Parent=MS.gene41637.t1
chr3.4 exon 88379371 88379487 88379371 ID=MS.gene41637.t1.exon5;Parent=MS.gene41637.t1
chr3.4 CDS 88379371 88379487 88379371 ID=cds.MS.gene41637.t1;Parent=MS.gene41637.t1
Gene Sequence

>MS.gene41637

ATGGAAACCGTGAGCCCTGAGCCTGGGAATTCAGCATTGGATTCAAAACATGAATTGGCTAAGGAAGAAACCAATGGGAAAATTCTTGTTCAAGATGATGGAGCTTTGAAGGATAGCACAGAAGCAGAACTCACCAAAATCAGCCTCATGAGAACTCTTGTTGAAAGCCGCGACCCTTCTTCTAAGGTAACAAACAAAGTTAACAAACATCATCATGACATGACATCATCGTATGTAGTTTTGATAAAACAGTGATAACGGTTAAACTTTGCCACTTTTTTTGCAACTACAACTTGTGTCATATCCTAGCACTTTGTTCAAGATTAGTTTATTTTGGTGTCAATTACTATGTTGTACCGATTTGGATCTGTTTTTCACTCTGAAACAAGTTCAATGTCCCAAAGTTTGACTTTTTAGAAAAATTATTTTGTTTTTTTTTTTCGAACTAAATTTTTTGGATTATGATAAAAATACAAAATTTATGATGGCCATGATGTTTGTTTTGTTTTATTACAGTACTGATTAGGCTTAGGTAGCAAATAGTTAGATTGGAATTGAATTGAACTTGATGGGCAGGAGGTAGATGATTTAATGATTAGAAGATTCTTGAGAGCTCGTGATTTAGATGTAGATAAGGCTTCAGCTATGTTCCTAAAGTACATGAAATGGAGAAAATCATTTGTTCCAAGTGGTTCTGTATCCCCTTCAGAGATACCTGACGATCTTGCACAAGAAAAGATGTATGTTCAAGGAGTGGATAAGAAGGGTCGACCTATAACTGTTGCTTTTGCTGCTAAACATTTTCAAAACAAAAATGGTTTGGATGCATTCAAACGTATGTTTTTTTCCCACTTGAGATGCTATTAGTTGTACAATGCTTGAAATCCTCTTATGGTTAACAAACTAATATGTGAAGTTATGTTTGGATTGACTTATTTAACTTTATCTATGTAGTTGTGTGAGATCGTTTAGGAGAGTTTATAAAAAACAACTTATGACATGTTTATAAGTTATTTTGAGTTTATTTCCATAAATTCTCCAAAATAGGGTCTGTTTGGACAGGGCCGGCCCAAGGGCCAAGCCACCCAAGCAAGGTTTAAACTTCGGGATTTAGGGTTAAAAAAAAAGCCTCAAAATAAGTCAATTTAGTTATAAATATATCATCTGACATACTAATAATCAATATTTATCTAGCTTAGTTGGTCATTTTAAGACATCATATATATCCTTTTGGTCTTAAGTTCAAATCTTGGATTCAACAAAACTTGATTTACTCTGCTTTTAATAAACATTGTGTTATTTTTTTAATTCTAAAAGGCTTCTTTATAAAATTTGCTTTAGGCATCTTGACGTGTTGGGCCGACCCTGTGTTTGGATTGACTTATTTGAACTTATCTACTAACATAAACTCATGTGAGACTATTTGGGAGAGTTTAAGGAAACTGATTATGACATATCCATAAGTTGTTTTCAGCTTATTTTCATAAGTTGCTCAAGATAGTTTATATAAAAGTTTATAACCTGTGTAAAAAAAGATAAATTTGATTTTATCTTGTTATAAAAATGACTTATACATAAGCATAATATGATAATTGCTTATAGCTATAAGTGTTTAATTAATTTGTTTATCCCAACAGGTAGTTTATGAAAACAGTTTGACTCAGCGTTACCTTTTGTTAATTTAGACATAAGCACTTATATGTTGTTTATCCAAACAATGGCTCAATGATAAATATTTTTTGTGTATGCAGGGTATGTAGTTTTTGCTCTTGAGAAACTATGCTCAAAGTAAGTGTCTTTCCTCTCATTAATTAATTCATGCATACAAAAAAGAAAATGTGATGCTTATACAGTTTATATTTGGAACTGTGAATCCAGTAAGAAGAATTGTAAAGTTTGTAGCTTACCCAATAATGTGACAGGATGCCACCAGGGGAAGAAAAGTTTGTATCTATTGCAGACATTAAGGGCTGGGGATATGCAAACAGCGACATTCGCGGTTACCTCGGTGCTCTAACCATTCTACAAGATTACTATCCAGAGAGATTGGGAAAGTTGTTCATAGTCCATGCACCTTACATGTTTATGAAAGTATGGAAAATTATTTACCCTTTCATTGATGACAATACCAAGAAGAAGGTAACACTTTTAAAATTGTTACTTGATGTATAAAAATTACTACTACATGTCTTTGAAAATTGAGATGTTCTAGGAGCATAATGCATGTGTTGAATATGTTGCAGATAGTATTTGTTGAGAACAAGAAGCTGAAAGCAACATTGCTTGAAGAGATTGATGAGAGTCAGCTCCCAGAGATATATGGAGGCAAACTTCCATTAGTTCCAATACAAGATTCTTGA
Protein sequence

>MS.gene41637.t1

METVSPEPGNSALDSKHELAKEETNGKILVQDDGALKDSTEAELTKISLMRTLVESRDPSSKEVDDLMIRRFLRARDLDVDKASAMFLKYMKWRKSFVPSGSVSPSEIPDDLAQEKMYVQGVDKKGRPITVAFAAKHFQNKNGLDAFKRYVVFALEKLCSKMPPGEEKFVSIADIKGWGYANSDIRGYLGALTILQDYYPERLGKLFIVHAPYMFMKVWKIIYPFIDDNTKKKIVFVENKKLKATLLEEIDESQLPEIYGGKLPLVPIQDS