Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41646.t1 | XP_003602755.2 | 98.8 | 811 | 10 | 0 | 1 | 811 | 1 | 811 | 0.00E+00 | 1473.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41646.t1 | Q9FIT8 | 57.6 | 773 | 291 | 7 | 1 | 742 | 1 | 767 | 4.5e-237 | 822.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41646.t1 | G7J3A5 | 98.8 | 811 | 10 | 0 | 1 | 811 | 1 | 811 | 0.0e+00 | 1473.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05415 | MS.gene41646 | 0.807844 | 4.14E-50 | -1.69E-46 |
| MS.gene055542 | MS.gene41646 | 0.848425 | 6.18E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41646.t1 | MTR_3g098680 | 98.644 | 811 | 11 | 0 | 1 | 811 | 1 | 811 | 0.0 | 1662 |
| MS.gene41646.t1 | MTR_8g100100 | 66.832 | 805 | 250 | 8 | 1 | 800 | 1 | 793 | 0.0 | 1079 |
| MS.gene41646.t1 | MTR_8g100100 | 66.338 | 811 | 250 | 9 | 1 | 800 | 1 | 799 | 0.0 | 1071 |
| MS.gene41646.t1 | MTR_7g020860 | 59.291 | 818 | 298 | 8 | 1 | 786 | 1 | 815 | 0.0 | 920 |
| MS.gene41646.t1 | MTR_7g020860 | 63.307 | 635 | 224 | 5 | 1 | 628 | 1 | 633 | 0.0 | 778 |
| MS.gene41646.t1 | MTR_4g074170 | 45.194 | 801 | 384 | 11 | 2 | 790 | 4 | 761 | 0.0 | 655 |
| MS.gene41646.t1 | MTR_2g080950 | 40.580 | 138 | 51 | 3 | 500 | 637 | 19 | 125 | 2.24e-22 | 101 |
| MS.gene41646.t1 | MTR_8g464390 | 39.310 | 145 | 55 | 4 | 503 | 645 | 22 | 135 | 2.85e-20 | 95.1 |
| MS.gene41646.t1 | MTR_6g080710 | 38.462 | 130 | 51 | 3 | 503 | 632 | 22 | 122 | 1.44e-18 | 87.0 |
| MS.gene41646.t1 | MTR_8g038400 | 36.923 | 130 | 57 | 3 | 507 | 635 | 27 | 132 | 8.56e-18 | 86.7 |
| MS.gene41646.t1 | MTR_3g017500 | 32.317 | 164 | 84 | 4 | 473 | 635 | 29 | 166 | 3.11e-16 | 82.0 |
| MS.gene41646.t1 | MTR_3g017500 | 34.286 | 140 | 67 | 3 | 497 | 635 | 21 | 136 | 4.09e-16 | 81.3 |
| MS.gene41646.t1 | MTR_8g088320 | 35.659 | 129 | 58 | 4 | 509 | 636 | 21 | 125 | 5.49e-16 | 80.5 |
| MS.gene41646.t1 | MTR_2g030230 | 36.434 | 129 | 57 | 4 | 509 | 636 | 30 | 134 | 7.45e-16 | 80.1 |
| MS.gene41646.t1 | MTR_8g067080 | 48.571 | 70 | 34 | 1 | 503 | 572 | 16 | 83 | 1.06e-12 | 71.2 |
| MS.gene41646.t1 | MTR_8g471110 | 48.571 | 70 | 34 | 1 | 503 | 572 | 16 | 83 | 1.06e-12 | 71.2 |
| MS.gene41646.t1 | MTR_8g067080 | 48.571 | 70 | 34 | 1 | 503 | 572 | 16 | 83 | 1.09e-12 | 71.2 |
| MS.gene41646.t1 | MTR_1g069000 | 44.286 | 70 | 37 | 1 | 503 | 572 | 10 | 77 | 4.65e-12 | 69.7 |
| MS.gene41646.t1 | MTR_8g067090 | 45.946 | 74 | 35 | 2 | 502 | 572 | 12 | 83 | 5.06e-12 | 68.9 |
| MS.gene41646.t1 | MTR_8g471120 | 45.946 | 74 | 35 | 2 | 502 | 572 | 12 | 83 | 5.06e-12 | 68.9 |
| MS.gene41646.t1 | MTR_5g022050 | 31.293 | 147 | 94 | 3 | 667 | 809 | 278 | 421 | 7.43e-12 | 68.9 |
| MS.gene41646.t1 | MTR_7g099830 | 40.000 | 75 | 43 | 1 | 503 | 577 | 10 | 82 | 5.41e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41646.t1 | AT5G61980 | 57.678 | 827 | 293 | 11 | 1 | 786 | 1 | 811 | 0.0 | 925 |
| MS.gene41646.t1 | AT5G13300 | 58.918 | 813 | 298 | 10 | 1 | 786 | 1 | 804 | 0.0 | 908 |
| MS.gene41646.t1 | AT1G60860 | 42.750 | 800 | 406 | 11 | 3 | 790 | 4 | 763 | 0.0 | 619 |
| MS.gene41646.t1 | AT1G10870 | 42.609 | 805 | 404 | 14 | 3 | 790 | 4 | 767 | 0.0 | 611 |
| MS.gene41646.t1 | AT1G10870 | 42.857 | 805 | 397 | 15 | 3 | 790 | 4 | 762 | 0.0 | 610 |
| MS.gene41646.t1 | AT1G60860 | 41.185 | 692 | 355 | 11 | 111 | 790 | 1 | 652 | 2.59e-168 | 502 |
| MS.gene41646.t1 | AT1G60860 | 39.841 | 630 | 327 | 11 | 173 | 790 | 3 | 592 | 2.29e-140 | 428 |
| MS.gene41646.t1 | AT5G54310 | 38.411 | 151 | 62 | 3 | 500 | 650 | 19 | 138 | 1.99e-21 | 99.0 |
| MS.gene41646.t1 | AT3G17660 | 37.500 | 136 | 54 | 3 | 500 | 635 | 19 | 123 | 1.13e-19 | 87.8 |
| MS.gene41646.t1 | AT4G21160 | 40.146 | 137 | 56 | 6 | 501 | 636 | 20 | 131 | 1.27e-19 | 91.7 |
| MS.gene41646.t1 | AT4G21160 | 40.146 | 137 | 56 | 6 | 501 | 636 | 20 | 131 | 1.27e-19 | 91.7 |
| MS.gene41646.t1 | AT4G21160 | 40.146 | 137 | 56 | 6 | 501 | 636 | 20 | 131 | 1.27e-19 | 91.7 |
| MS.gene41646.t1 | AT4G21160 | 40.146 | 137 | 56 | 6 | 501 | 636 | 20 | 131 | 1.27e-19 | 91.7 |
| MS.gene41646.t1 | AT3G17660 | 37.500 | 136 | 54 | 3 | 500 | 635 | 19 | 123 | 2.40e-19 | 88.6 |
| MS.gene41646.t1 | AT3G17660 | 37.500 | 136 | 54 | 3 | 500 | 635 | 19 | 123 | 4.45e-19 | 88.2 |
| MS.gene41646.t1 | AT3G07940 | 35.758 | 165 | 79 | 5 | 485 | 649 | 37 | 174 | 4.94e-19 | 88.6 |
| MS.gene41646.t1 | AT3G07940 | 36.667 | 150 | 70 | 4 | 500 | 649 | 50 | 174 | 1.88e-18 | 89.0 |
| MS.gene41646.t1 | AT4G05330 | 38.760 | 129 | 54 | 4 | 509 | 636 | 27 | 131 | 6.05e-18 | 86.7 |
| MS.gene41646.t1 | AT4G05330 | 38.760 | 129 | 54 | 4 | 509 | 636 | 27 | 131 | 6.05e-18 | 86.7 |
| MS.gene41646.t1 | AT3G17660 | 33.824 | 136 | 49 | 3 | 500 | 635 | 19 | 113 | 1.00e-13 | 71.6 |
| MS.gene41646.t1 | AT2G35210 | 50.000 | 70 | 33 | 1 | 503 | 572 | 16 | 83 | 5.83e-13 | 72.0 |
| MS.gene41646.t1 | AT2G35210 | 50.000 | 70 | 33 | 1 | 503 | 572 | 16 | 83 | 1.10e-12 | 71.2 |
| MS.gene41646.t1 | AT4G17890 | 47.143 | 70 | 35 | 1 | 503 | 572 | 19 | 86 | 6.09e-12 | 68.9 |
| MS.gene41646.t1 | AT4G17890 | 47.143 | 70 | 35 | 1 | 503 | 572 | 19 | 86 | 7.73e-12 | 68.6 |
| MS.gene41646.t1 | AT5G46750 | 47.143 | 70 | 35 | 1 | 503 | 572 | 16 | 83 | 1.29e-11 | 67.8 |
| MS.gene41646.t1 | AT3G53710 | 45.312 | 64 | 33 | 1 | 509 | 572 | 16 | 77 | 1.31e-11 | 68.2 |
| MS.gene41646.t1 | AT3G53710 | 45.312 | 64 | 33 | 1 | 509 | 572 | 16 | 77 | 1.31e-11 | 68.2 |
| MS.gene41646.t1 | AT3G53710 | 45.312 | 64 | 33 | 1 | 509 | 572 | 16 | 77 | 1.31e-11 | 68.2 |
| MS.gene41646.t1 | AT2G37550 | 55.319 | 47 | 21 | 0 | 509 | 555 | 16 | 62 | 3.01e-11 | 67.0 |
| MS.gene41646.t1 | AT2G37550 | 55.319 | 47 | 21 | 0 | 509 | 555 | 16 | 62 | 3.01e-11 | 67.0 |
| MS.gene41646.t1 | AT5G66055 | 34.426 | 122 | 73 | 2 | 667 | 783 | 279 | 398 | 3.88e-11 | 66.6 |
Find 177 sgRNAs with CRISPR-Local
Find 403 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAACTGCCCTTGAAAATTT+TGG | 0.129587 | 3.4:+88493901 | MS.gene41646:CDS |
| TCTCAAAGCAATAGAGAATT+TGG | 0.160154 | 3.4:-88494110 | None:intergenic |
| ATAGCACCTGATCATATAAT+TGG | 0.169057 | 3.4:-88494591 | None:intergenic |
| ATGCTGAGCAATCAGATTTA+AGG | 0.174387 | 3.4:+88496879 | MS.gene41646:CDS |
| TACGAGGATGCCAAGGTTTA+AGG | 0.210514 | 3.4:-88497464 | None:intergenic |
| AGTCTTCAGATGATTTATTA+AGG | 0.228790 | 3.4:-88497330 | None:intergenic |
| CAGATTTAAGGTTCTGCTTC+AGG | 0.255810 | 3.4:+88496891 | MS.gene41646:CDS |
| CTGAGTAGGTTGCTTTCTTC+AGG | 0.256487 | 3.4:+88496779 | MS.gene41646:CDS |
| CAAACTGATGACACTCCTTT+TGG | 0.256648 | 3.4:+88498136 | MS.gene41646:CDS |
| CATCAAGGATTTCGACATTA+AGG | 0.277481 | 3.4:-88494333 | None:intergenic |
| TTTATTAAGGGTGGAGTTCT+TGG | 0.279504 | 3.4:-88497317 | None:intergenic |
| ATAGAGAATTTGGCCATTAC+AGG | 0.293566 | 3.4:-88494100 | None:intergenic |
| ATCTCTTTGCGAACTCGGTT+TGG | 0.299879 | 3.4:+88498083 | MS.gene41646:CDS |
| CTCTCCCATGTTTCGTCAAC+AGG | 0.308427 | 3.4:+88492709 | MS.gene41646:CDS |
| TTGTCCTTGAATGGACCTTA+TGG | 0.309281 | 3.4:+88496195 | MS.gene41646:CDS |
| TACAAGATTATGATCGATTA+GGG | 0.316434 | 3.4:+88497278 | MS.gene41646:CDS |
| TTACAAGATTATGATCGATT+AGG | 0.319398 | 3.4:+88497277 | MS.gene41646:CDS |
| CTCAAAGATGTATACTTTGC+AGG | 0.340532 | 3.4:+88496925 | MS.gene41646:CDS |
| TCTCTTTGCGAACTCGGTTT+GGG | 0.344476 | 3.4:+88498084 | MS.gene41646:CDS |
| CGATCATAATCTTGTAAACT+TGG | 0.347293 | 3.4:-88497271 | None:intergenic |
| TGGCCGATATCGCCAGGTTC+TGG | 0.349162 | 3.4:-88499425 | None:intergenic |
| GTAAATGTAGCTTCAGGGTT+TGG | 0.350696 | 3.4:+88493084 | MS.gene41646:intron |
| CTAGAAATGAAGAATGGATT+TGG | 0.352572 | 3.4:-88499445 | None:intergenic |
| GATCCTCTATTTGTAACTTT+GGG | 0.353331 | 3.4:+88493937 | MS.gene41646:CDS |
| GCACCAGAACCTGGCGATAT+CGG | 0.353384 | 3.4:+88499422 | MS.gene41646:CDS |
| CTATTCGATATCCTAGAAAA+AGG | 0.363859 | 3.4:-88496246 | None:intergenic |
| TGATCCTCTATTTGTAACTT+TGG | 0.364030 | 3.4:+88493936 | MS.gene41646:CDS |
| AGGTTTAAGGATGCCCAGTC+TGG | 0.371773 | 3.4:-88497451 | None:intergenic |
| GATTGGATGGAAAAGATAAA+TGG | 0.371968 | 3.4:+88497059 | MS.gene41646:CDS |
| CTTAACTATGTTTCAGTCAC+TGG | 0.372256 | 3.4:+88498057 | MS.gene41646:CDS |
| CAAAACGTTCATCAAATTTG+AGG | 0.376722 | 3.4:+88496451 | MS.gene41646:CDS |
| TCATTCCAACATCACTTGTT+AGG | 0.382586 | 3.4:-88498906 | None:intergenic |
| CATTAAGGATGTTCATTAAC+CGG | 0.382719 | 3.4:-88494318 | None:intergenic |
| TGTACTTTCTACATCCTTTG+TGG | 0.388820 | 3.4:-88493147 | None:intergenic |
| TCCGGCGTTCACCGTAATCT+TGG | 0.391420 | 3.4:+88497499 | MS.gene41646:CDS |
| TTCAAGTAAAGTTCAGCTAA+TGG | 0.395269 | 3.4:+88498843 | MS.gene41646:CDS |
| CGAGGAAGCTCGTTTCAATC+TGG | 0.399336 | 3.4:+88495469 | MS.gene41646:CDS |
| ATTTATGTACACCAAGATTA+CGG | 0.402412 | 3.4:-88497510 | None:intergenic |
| TAGTGTCTGTACCGACAATA+AGG | 0.404460 | 3.4:-88497093 | None:intergenic |
| AAGGATGCCCAGTCTGGGTC+AGG | 0.406877 | 3.4:-88497445 | None:intergenic |
| GTCTTCAGATGATTTATTAA+GGG | 0.412252 | 3.4:-88497329 | None:intergenic |
| ATCGAGCTTCTCCTACAGTA+TGG | 0.413716 | 3.4:+88498928 | MS.gene41646:CDS |
| GTTAGTGGAGAAGCACTATC+TGG | 0.415526 | 3.4:+88498683 | MS.gene41646:CDS |
| CTCGTATGCATTGAATGTTC+CGG | 0.420456 | 3.4:+88497481 | MS.gene41646:CDS |
| ATTCAGAGAAAGTATTTGTT+CGG | 0.424073 | 3.4:+88498540 | MS.gene41646:CDS |
| ATACTTACATTTGTATGTAA+TGG | 0.426003 | 3.4:-88496537 | None:intergenic |
| GACTGGGCATCCTTAAACCT+TGG | 0.430558 | 3.4:+88497454 | MS.gene41646:CDS |
| ACCAATTGATATTCTAAGAA+AGG | 0.432493 | 3.4:+88497387 | MS.gene41646:CDS |
| AAAACGTTCATCAAATTTGA+GGG | 0.433013 | 3.4:+88496452 | MS.gene41646:CDS |
| GCGGTAAACCTGACCCAGAC+TGG | 0.433965 | 3.4:+88497437 | MS.gene41646:CDS |
| TATACATCCGAATGACTTGT+TGG | 0.434689 | 3.4:-88499485 | None:intergenic |
| ACCTTTCTTAGAATATCAAT+TGG | 0.437802 | 3.4:-88497388 | None:intergenic |
| CTTAAGCTTGCACCAGAACC+TGG | 0.441469 | 3.4:+88499413 | MS.gene41646:CDS |
| CGATGATCTTATTTCACTAA+AGG | 0.446274 | 3.4:+88498279 | MS.gene41646:CDS |
| GGTTCTGGTGCAAGCTTAAG+AGG | 0.454545 | 3.4:-88499410 | None:intergenic |
| GCTGGAACCTTTCATTATTG+AGG | 0.457973 | 3.4:+88495837 | MS.gene41646:CDS |
| AGCTTCCCAATTATATGATC+AGG | 0.458829 | 3.4:+88494585 | MS.gene41646:CDS |
| CTGCAAAGTATACATCTTTG+AGG | 0.463088 | 3.4:-88496924 | None:intergenic |
| GAAAGTAGGTTGTCCTTGAA+TGG | 0.463161 | 3.4:+88496186 | MS.gene41646:CDS |
| TCCAACATCACTTGTTAGGC+AGG | 0.465003 | 3.4:-88498902 | None:intergenic |
| ATGAATATTCACTTCTCCAC+TGG | 0.465462 | 3.4:-88496223 | None:intergenic |
| ATACACTGCTTTCTTGTCGT+TGG | 0.467572 | 3.4:-88498624 | None:intergenic |
| GATTTCTCTTTGTGAAAGAA+TGG | 0.469180 | 3.4:+88496137 | MS.gene41646:CDS |
| GTAGGGATATCAGCAGTTAC+AGG | 0.469264 | 3.4:+88495813 | MS.gene41646:intron |
| CTGCAAAATTGCTTATTACA+AGG | 0.471398 | 3.4:+88499025 | MS.gene41646:CDS |
| GAGAACCTGTTGACGAAACA+TGG | 0.472093 | 3.4:-88492714 | None:intergenic |
| CACTATATACCTTGACATCA+AGG | 0.472372 | 3.4:-88494348 | None:intergenic |
| GGGAAATCTCTTTGCGAACT+CGG | 0.473702 | 3.4:+88498078 | MS.gene41646:CDS |
| CATCAAATTTGAGGGCTGAC+TGG | 0.475429 | 3.4:+88496460 | MS.gene41646:CDS |
| TTCAGTGGGGCAACAAGTGA+TGG | 0.476100 | 3.4:+88498589 | MS.gene41646:CDS |
| TCATCTTCGATACTTTCAAC+AGG | 0.477596 | 3.4:+88495668 | MS.gene41646:CDS |
| TGGGTCAGGTTTACCGCAAT+CGG | 0.479222 | 3.4:-88497431 | None:intergenic |
| TGGATTTGGCCGATATCGCC+AGG | 0.486194 | 3.4:-88499431 | None:intergenic |
| TTCAGATGATTTATTAAGGG+TGG | 0.491115 | 3.4:-88497326 | None:intergenic |
| CCTCCCAAAGTTACAAATAG+AGG | 0.493096 | 3.4:-88493940 | None:intergenic |
| TTGCTTTCTTCAGGTTACCC+TGG | 0.494258 | 3.4:+88496788 | MS.gene41646:CDS |
| GTGGACATCAATTCTGTTAG+TGG | 0.496499 | 3.4:+88498668 | MS.gene41646:CDS |
| CCTTCTTTATCTACAGCAAG+TGG | 0.499693 | 3.4:-88499380 | None:intergenic |
| TAGCACCTGATCATATAATT+GGG | 0.502026 | 3.4:-88494590 | None:intergenic |
| ATATCAGCAGTTACAGGAGC+TGG | 0.502898 | 3.4:+88495819 | MS.gene41646:CDS |
| CTATGCAATACTTACCCAAA+AGG | 0.503793 | 3.4:-88498151 | None:intergenic |
| AGTCATTGCCTCCTTATTGT+CGG | 0.504899 | 3.4:+88497082 | MS.gene41646:CDS |
| GACAGCGGCGACATCAAACT+TGG | 0.507431 | 3.4:-88495305 | None:intergenic |
| GGGTTCTAGTCTGCTTCACT+TGG | 0.509816 | 3.4:+88498879 | MS.gene41646:CDS |
| AAGCAAGTTATCAAGAAAGT+AGG | 0.510880 | 3.4:+88496172 | MS.gene41646:CDS |
| TTCATTTCTAGAGAAAATTG+AGG | 0.512263 | 3.4:+88499457 | MS.gene41646:CDS |
| TGCAAAGTATACATCTTTGA+GGG | 0.513469 | 3.4:-88496923 | None:intergenic |
| ATAATGTAAATGTAGCTTCA+GGG | 0.515640 | 3.4:+88493079 | MS.gene41646:intron |
| CCTCTATTTGTAACTTTGGG+AGG | 0.517020 | 3.4:+88493940 | MS.gene41646:CDS |
| GGGCTTGGAGAGGCATATGA+TGG | 0.521668 | 3.4:+88493865 | MS.gene41646:CDS |
| CCACTTGCTGTAGATAAAGA+AGG | 0.523554 | 3.4:+88499380 | MS.gene41646:CDS |
| TGGTAATGAGTCGATAATGC+TGG | 0.524929 | 3.4:-88497251 | None:intergenic |
| AGTCACCATCTTCTTTCAGT+GGG | 0.526183 | 3.4:+88498575 | MS.gene41646:CDS |
| CTTTGCGAACTCGGTTTGGG+AGG | 0.526694 | 3.4:+88498087 | MS.gene41646:CDS |
| TCTCCACTGGGAGAACCATA+AGG | 0.526885 | 3.4:-88496210 | None:intergenic |
| TTACAAATAGAGGATCACTA+TGG | 0.527310 | 3.4:-88493930 | None:intergenic |
| AGACTTACAGAAGAATAAGC+AGG | 0.527857 | 3.4:+88497348 | MS.gene41646:CDS |
| ATGCGCTTGACCAGATGGAT+TGG | 0.529420 | 3.4:+88497042 | MS.gene41646:CDS |
| CAAGGAACTTCTTCGGTCAC+AGG | 0.530219 | 3.4:+88494147 | MS.gene41646:CDS |
| GGTATGAGCAGGACCTGTAA+TGG | 0.530587 | 3.4:+88494087 | MS.gene41646:intron |
| CCTTCTCACATCAACAATCA+AGG | 0.531142 | 3.4:+88496853 | MS.gene41646:CDS |
| GAAATAAGATCATCGTGCTC+TGG | 0.531296 | 3.4:-88498271 | None:intergenic |
| ATTATGATCGATTAGGGAGT+GGG | 0.533207 | 3.4:+88497284 | MS.gene41646:CDS |
| GTACACACAAGGAACTTCTT+CGG | 0.535976 | 3.4:+88494140 | MS.gene41646:CDS |
| GTATCGGCACATTGTCAAAT+CGG | 0.536294 | 3.4:+88498643 | MS.gene41646:CDS |
| TTCTCAGCTGACTCAGAAAG+TGG | 0.536433 | 3.4:+88497214 | MS.gene41646:CDS |
| GCCTGCCTAACAAGTGATGT+TGG | 0.537349 | 3.4:+88498901 | MS.gene41646:CDS |
| GGACCAACCAACAAGTCATT+CGG | 0.539337 | 3.4:+88499478 | MS.gene41646:CDS |
| GGAGGCTGTCACTGGAGTCA+TGG | 0.541060 | 3.4:+88495641 | MS.gene41646:CDS |
| CCTTGATTGTTGATGTGAGA+AGG | 0.542858 | 3.4:-88496853 | None:intergenic |
| CATCCGAATGACTTGTTGGT+TGG | 0.543140 | 3.4:-88499481 | None:intergenic |
| AATCACTACGCTCAAGATGT+TGG | 0.548317 | 3.4:+88493119 | MS.gene41646:CDS |
| AGTGATGCTTGCAGGAAGCT+CGG | 0.549421 | 3.4:+88494548 | MS.gene41646:intron |
| TTCGTAACCTCAATAATGAA+AGG | 0.551600 | 3.4:-88495844 | None:intergenic |
| TCAGGGTTTGGAAGAAAATG+TGG | 0.553678 | 3.4:+88493096 | MS.gene41646:CDS |
| TGTCGAAATCCTTGATGTCA+AGG | 0.554806 | 3.4:+88494339 | MS.gene41646:CDS |
| TGGTGCTCTTCATAATATTG+AGG | 0.554919 | 3.4:+88495596 | MS.gene41646:CDS |
| TGCATTACTGCATTATGAGA+GGG | 0.555369 | 3.4:+88498992 | MS.gene41646:CDS |
| TTAACTATGTTTCAGTCACT+GGG | 0.558129 | 3.4:+88498058 | MS.gene41646:CDS |
| TGAGGGCTGACTGGAAGAGA+AGG | 0.560438 | 3.4:+88496469 | MS.gene41646:CDS |
| ATGCTATTGATTCAAGAGGT+AGG | 0.560612 | 3.4:+88498962 | MS.gene41646:CDS |
| AATGACAAATGTGCCGATTG+CGG | 0.562715 | 3.4:+88497418 | MS.gene41646:CDS |
| GGAAAGATTCATTCATGCAA+AGG | 0.563440 | 3.4:+88498300 | MS.gene41646:CDS |
| GATTATGATCGATTAGGGAG+TGG | 0.565182 | 3.4:+88497283 | MS.gene41646:CDS |
| AGAAAATGCGCTTGACCAGA+TGG | 0.565952 | 3.4:+88497037 | MS.gene41646:CDS |
| GCTAATGGAGGACATACAAG+AGG | 0.566617 | 3.4:+88498858 | MS.gene41646:CDS |
| TGAATATTCACTTCTCCACT+GGG | 0.569283 | 3.4:-88496222 | None:intergenic |
| AGAACCATAAGGTCCATTCA+AGG | 0.570921 | 3.4:-88496199 | None:intergenic |
| TTATGATCGATTAGGGAGTG+GGG | 0.573933 | 3.4:+88497285 | MS.gene41646:CDS |
| AAGTCACCATCTTCTTTCAG+TGG | 0.573987 | 3.4:+88498574 | MS.gene41646:CDS |
| CTCATAATGCAGTAATGCAA+TGG | 0.576999 | 3.4:-88498988 | None:intergenic |
| CGGTAAACCTGACCCAGACT+GGG | 0.577469 | 3.4:+88497438 | MS.gene41646:CDS |
| CTAAATGCTATTGATTCAAG+AGG | 0.577663 | 3.4:+88498958 | MS.gene41646:CDS |
| TTGCATTACTGCATTATGAG+AGG | 0.583572 | 3.4:+88498991 | MS.gene41646:CDS |
| TGTGCCAATGAAAACAGTGC+AGG | 0.585960 | 3.4:+88496752 | MS.gene41646:CDS |
| GTAGGTTCGAGTCATCCGAC+AGG | 0.588581 | 3.4:+88496419 | MS.gene41646:intron |
| CAATGCAAGAACAATATTCG+AGG | 0.588985 | 3.4:+88495451 | MS.gene41646:CDS |
| TTAGATCTGCTCCATACTGT+AGG | 0.591385 | 3.4:-88498939 | None:intergenic |
| GTAGCTGAATCAGCTGCAAG+TGG | 0.591590 | 3.4:+88496282 | MS.gene41646:CDS |
| GGTTTAAGGATGCCCAGTCT+GGG | 0.593046 | 3.4:-88497450 | None:intergenic |
| CAATGCATACGAGGATGCCA+AGG | 0.597403 | 3.4:-88497471 | None:intergenic |
| TGAATCAGCTGCAAGTGGAA+AGG | 0.599355 | 3.4:+88496287 | MS.gene41646:CDS |
| GATATTCTAAGAAAGGTTAG+CGG | 0.601944 | 3.4:+88497394 | MS.gene41646:CDS |
| CAGAGAAAGTATTTGTTCGG+CGG | 0.604077 | 3.4:+88498543 | MS.gene41646:CDS |
| ACGACAAGAAAGCAGTGTAT+CGG | 0.605379 | 3.4:+88498627 | MS.gene41646:CDS |
| TTATTGTCGGTACAGACACT+AGG | 0.608383 | 3.4:+88497095 | MS.gene41646:CDS |
| TGGAGCATATGCTAAATGAC+CGG | 0.614503 | 3.4:+88494299 | MS.gene41646:CDS |
| ACAGTGCAGGCATTCTGAGT+AGG | 0.614734 | 3.4:+88496765 | MS.gene41646:CDS |
| TTCTAGGATATCGAATAGTG+TGG | 0.615385 | 3.4:+88496251 | MS.gene41646:CDS |
| GCACATTGTCAAATCGGACG+TGG | 0.616091 | 3.4:+88498649 | MS.gene41646:CDS |
| TGTCGCCGCTGTCATAGAAG+AGG | 0.627321 | 3.4:+88495315 | MS.gene41646:CDS |
| TGACTGAAACATAGTTAAGA+CGG | 0.630730 | 3.4:-88498053 | None:intergenic |
| AGCAAGAGAAAGTTACAATG+AGG | 0.632689 | 3.4:+88496110 | MS.gene41646:CDS |
| GACTTACAGAAGAATAAGCA+GGG | 0.633668 | 3.4:+88497349 | MS.gene41646:CDS |
| TTTCATCAGGAACAACTCCA+GGG | 0.634652 | 3.4:-88496805 | None:intergenic |
| ACCAAGATTACGGTGAACGC+CGG | 0.643800 | 3.4:-88497500 | None:intergenic |
| AGAACCTGTTGACGAAACAT+GGG | 0.644015 | 3.4:-88492713 | None:intergenic |
| GTTGCCCCACTGAAAGAAGA+TGG | 0.647235 | 3.4:-88498580 | None:intergenic |
| GGTACAGACACTAGGTGGAA+AGG | 0.648826 | 3.4:+88497103 | MS.gene41646:CDS |
| GGACCTTATGGTTCTCCCAG+TGG | 0.649871 | 3.4:+88496207 | MS.gene41646:CDS |
| ACGTACCTCTTCTATGACAG+CGG | 0.656311 | 3.4:-88495320 | None:intergenic |
| GCTTGACCAGATGGATTGGA+TGG | 0.656746 | 3.4:+88497046 | MS.gene41646:CDS |
| AAGTAAAGTTCAGCTAATGG+AGG | 0.657735 | 3.4:+88498846 | MS.gene41646:CDS |
| GAAACTTGATGTCAAAGTGT+GGG | 0.658753 | 3.4:+88498024 | MS.gene41646:CDS |
| TGAAACTTGATGTCAAAGTG+TGG | 0.667816 | 3.4:+88498023 | MS.gene41646:CDS |
| TTGTCGGTACAGACACTAGG+TGG | 0.672851 | 3.4:+88497098 | MS.gene41646:CDS |
| TAGGTTCGAGTCATCCGACA+GGG | 0.679807 | 3.4:+88496420 | MS.gene41646:intron |
| GAGAGAAATCAGTACACACA+AGG | 0.679960 | 3.4:+88494129 | MS.gene41646:CDS |
| ATGTGAGAAGGTTCACTGTG+TGG | 0.680486 | 3.4:-88496841 | None:intergenic |
| GTCACCATCTTCTTTCAGTG+GGG | 0.689158 | 3.4:+88498576 | MS.gene41646:CDS |
| AGATGTTGGAAGTTCCACAA+AGG | 0.694781 | 3.4:+88493133 | MS.gene41646:CDS |
| CGGAACATTCAATGCATACG+AGG | 0.700636 | 3.4:-88497480 | None:intergenic |
| TGTCTGTACCGACAATAAGG+AGG | 0.701925 | 3.4:-88497090 | None:intergenic |
| CTAATGGAGGACATACAAGA+GGG | 0.703354 | 3.4:+88498859 | MS.gene41646:CDS |
| GATGCTTGCAGGAAGCTCGG+AGG | 0.714831 | 3.4:+88494551 | MS.gene41646:intron |
| CTGAAACATAGTTAAGACGG+AGG | 0.715350 | 3.4:-88498050 | None:intergenic |
| TCAATCAGCTATATTCACAG+CGG | 0.758559 | 3.4:+88496726 | MS.gene41646:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAAAAAAAAAAAAAAA+TGG | + | chr3.4:88494066-88494085 | MS.gene41646:intron | 0.0% |
| !! | ATAAAAACTTATCATAATAA+GGG | + | chr3.4:88493243-88493262 | MS.gene41646:intron | 10.0% |
| !!! | TGAATTATTTTATTTTACAA+GGG | + | chr3.4:88494722-88494741 | MS.gene41646:intron | 10.0% |
| !!! | TTGAATTATTTTATTTTACA+AGG | + | chr3.4:88494721-88494740 | MS.gene41646:intron | 10.0% |
| !!! | TTTTGTTTAGTTTTTTTTAT+TGG | + | chr3.4:88497927-88497946 | MS.gene41646:intron | 10.0% |
| !! | AATTAGATTAAAAAAGATCA+TGG | - | chr3.4:88495404-88495423 | None:intergenic | 15.0% |
| !! | CATAAAAACTTATCATAATA+AGG | + | chr3.4:88493242-88493261 | MS.gene41646:intron | 15.0% |
| !! | TATGTATCAATTAAAATTGT+TGG | + | chr3.4:88496024-88496043 | MS.gene41646:intron | 15.0% |
| !! | TCAAAAGTTATAGTTAAAAA+AGG | - | chr3.4:88494047-88494066 | None:intergenic | 15.0% |
| !!! | AAAAAGGACAATTTTATTAA+TGG | - | chr3.4:88494031-88494050 | None:intergenic | 15.0% |
| !!! | AAAAGTTTGATATATGTTTT+TGG | + | chr3.4:88494806-88494825 | MS.gene41646:intron | 15.0% |
| !!! | AGTTTTTTTTATTGGTTTTA+AGG | + | chr3.4:88497935-88497954 | MS.gene41646:intron | 15.0% |
| !!! | GAATATGGATATTTTTATAT+AGG | - | chr3.4:88499250-88499269 | None:intergenic | 15.0% |
| !!! | GAATTATTTTATTTTACAAG+GGG | + | chr3.4:88494723-88494742 | MS.gene41646:intron | 15.0% |
| !!! | TTTCTTTTATTTTTTTCCAT+AGG | - | chr3.4:88493625-88493644 | None:intergenic | 15.0% |
| !! | AATAATTCAAGAAAGAGTAA+AGG | - | chr3.4:88494711-88494730 | None:intergenic | 20.0% |
| !! | AGAATATTCAATACGTAAAT+AGG | - | chr3.4:88497653-88497672 | None:intergenic | 20.0% |
| !! | ATACTTACATTTGTATGTAA+TGG | - | chr3.4:88496540-88496559 | None:intergenic | 20.0% |
| !! | ATTATAGTAGAAAAATGTGT+TGG | - | chr3.4:88493649-88493668 | None:intergenic | 20.0% |
| !! | TAAAAATTCTTTCTCTTGTA+GGG | + | chr3.4:88495796-88495815 | MS.gene41646:intron | 20.0% |
| !! | TATATGACATTATCCAAATT+TGG | + | chr3.4:88495703-88495722 | MS.gene41646:intron | 20.0% |
| !! | TTAAAAATTCTTTCTCTTGT+AGG | + | chr3.4:88495795-88495814 | MS.gene41646:intron | 20.0% |
| !!! | AACATTTTATTATCTTGTCA+TGG | + | chr3.4:88495374-88495393 | MS.gene41646:intron | 20.0% |
| !!! | AATTGATTTATGAGTTATGA+TGG | + | chr3.4:88494936-88494955 | MS.gene41646:intron | 20.0% |
| !!! | AGAGAAAGAATTTTTAAAAC+TGG | - | chr3.4:88495792-88495811 | None:intergenic | 20.0% |
| !!! | ATCAAGTACAATTATTTTCA+GGG | + | chr3.4:88499349-88499368 | MS.gene41646:intron | 20.0% |
| !!! | CACTGTCTTATTTTTTTAAA+AGG | + | chr3.4:88494199-88494218 | MS.gene41646:intron | 20.0% |
| !!! | CATCACAAAATTCAATATTT+TGG | + | chr3.4:88495069-88495088 | MS.gene41646:intron | 20.0% |
| !!! | CATTATTTGAGTTAATATCT+TGG | + | chr3.4:88498484-88498503 | MS.gene41646:intron | 20.0% |
| !!! | GTTATGTCATATGTTTTATA+TGG | + | chr3.4:88493014-88493033 | MS.gene41646:intron | 20.0% |
| !!! | TAGTCTTTAAGTTTTTTACT+TGG | - | chr3.4:88496563-88496582 | None:intergenic | 20.0% |
| !!! | TTCTTTTCTCTTTATTTAAG+TGG | + | chr3.4:88492973-88492992 | MS.gene41646:intron | 20.0% |
| !!! | TTGTAGACTATTTTGTTTTT+TGG | + | chr3.4:88493192-88493211 | MS.gene41646:intron | 20.0% |
| ! | AAAAAAAAAATGGTATGAGC+AGG | + | chr3.4:88494076-88494095 | MS.gene41646:intron | 25.0% |
| ! | AAAACGTTCATCAAATTTGA+GGG | + | chr3.4:88496452-88496471 | MS.gene41646:CDS | 25.0% |
| ! | AAAATATCCATATTCACCTA+AGG | + | chr3.4:88499255-88499274 | MS.gene41646:intron | 25.0% |
| ! | AAACATAAATCAAATCAAGC+AGG | - | chr3.4:88494839-88494858 | None:intergenic | 25.0% |
| ! | AAAGCTGAAAAAAACAAGTT+AGG | + | chr3.4:88498235-88498254 | MS.gene41646:CDS | 25.0% |
| ! | AAATATCCATATTCACCTAA+GGG | + | chr3.4:88499256-88499275 | MS.gene41646:intron | 25.0% |
| ! | AAATATGAAATGCATGTGAT+CGG | + | chr3.4:88495534-88495553 | MS.gene41646:intron | 25.0% |
| ! | AAGACAGTGATTATAAAAGT+TGG | - | chr3.4:88494188-88494207 | None:intergenic | 25.0% |
| ! | AATAATGTAAATGTAGCTTC+AGG | + | chr3.4:88493078-88493097 | MS.gene41646:intron | 25.0% |
| ! | AATGATTGAAGGAACTATTA+AGG | - | chr3.4:88493835-88493854 | None:intergenic | 25.0% |
| ! | ACCATAACACAAATAAAACA+TGG | + | chr3.4:88495234-88495253 | MS.gene41646:intron | 25.0% |
| ! | ACCTTTCTTAGAATATCAAT+TGG | - | chr3.4:88497391-88497410 | None:intergenic | 25.0% |
| ! | AGTCTTCAGATGATTTATTA+AGG | - | chr3.4:88497333-88497352 | None:intergenic | 25.0% |
| ! | ATAATGTAAATGTAGCTTCA+GGG | + | chr3.4:88493079-88493098 | MS.gene41646:intron | 25.0% |
| ! | ATTCAAGAGACATTAAATGT+AGG | - | chr3.4:88493579-88493598 | None:intergenic | 25.0% |
| ! | ATTTATGTACACCAAGATTA+CGG | - | chr3.4:88497513-88497532 | None:intergenic | 25.0% |
| ! | GTAATGAAAACTAAGTAGAA+TGG | - | chr3.4:88496347-88496366 | None:intergenic | 25.0% |
| ! | GTCTTCAGATGATTTATTAA+GGG | - | chr3.4:88497332-88497351 | None:intergenic | 25.0% |
| ! | TAAGCAAAACAACTAAATTC+TGG | + | chr3.4:88499290-88499309 | MS.gene41646:intron | 25.0% |
| ! | TACAAGATTATGATCGATTA+GGG | + | chr3.4:88497278-88497297 | MS.gene41646:CDS | 25.0% |
| ! | TGAACATTAAGTTAGTTACA+AGG | + | chr3.4:88497672-88497691 | MS.gene41646:intron | 25.0% |
| ! | TGGCTTAACTTCTATTTAAT+TGG | - | chr3.4:88493784-88493803 | None:intergenic | 25.0% |
| ! | TTAAGATCAGCTATATATAG+AGG | - | chr3.4:88497706-88497725 | None:intergenic | 25.0% |
| ! | TTACAAGATTATGATCGATT+AGG | + | chr3.4:88497277-88497296 | MS.gene41646:CDS | 25.0% |
| !! | AATGTTAGTAGTTAGTTCTT+AGG | - | chr3.4:88499225-88499244 | None:intergenic | 25.0% |
| !! | ACCAATTGATATTCTAAGAA+AGG | + | chr3.4:88497387-88497406 | MS.gene41646:CDS | 25.0% |
| !! | ATGTTAGTAGTTAGTTCTTA+GGG | - | chr3.4:88499224-88499243 | None:intergenic | 25.0% |
| !! | GATCAAGTACAATTATTTTC+AGG | + | chr3.4:88499348-88499367 | MS.gene41646:intron | 25.0% |
| !! | GATCTAAAATATAAGCAGAA+AGG | - | chr3.4:88495743-88495762 | None:intergenic | 25.0% |
| !! | TAAGTATTGCATAGATTGAT+AGG | + | chr3.4:88498160-88498179 | MS.gene41646:intron | 25.0% |
| !! | TCAAGTACAATTATTTTCAG+GGG | + | chr3.4:88499350-88499369 | MS.gene41646:intron | 25.0% |
| !! | TGAATATTCATCCTTTTTCT+AGG | + | chr3.4:88496235-88496254 | MS.gene41646:CDS | 25.0% |
| !! | TGGATAAACAACTTAATTTG+TGG | + | chr3.4:88493212-88493231 | MS.gene41646:intron | 25.0% |
| !! | TTCATTTCTAGAGAAAATTG+AGG | + | chr3.4:88499457-88499476 | MS.gene41646:CDS | 25.0% |
| !!! | AATTGATACATATGCCATTT+TGG | - | chr3.4:88496016-88496035 | None:intergenic | 25.0% |
| !!! | AGTTCCTTCAATCATTTTTT+AGG | + | chr3.4:88493839-88493858 | MS.gene41646:intron | 25.0% |
| !!! | ATAATTTTAACAACGAGAGT+TGG | + | chr3.4:88493481-88493500 | MS.gene41646:intron | 25.0% |
| !!! | ATTATTTTACGCTAAACATG+TGG | + | chr3.4:88494416-88494435 | MS.gene41646:intron | 25.0% |
| !!! | ATTCAGAGAAAGTATTTGTT+CGG | + | chr3.4:88498540-88498559 | MS.gene41646:CDS | 25.0% |
| !!! | GATTCAAATTTTGATCATTG+CGG | + | chr3.4:88493758-88493777 | MS.gene41646:intron | 25.0% |
| !!! | GTTCCTTCAATCATTTTTTA+GGG | + | chr3.4:88493840-88493859 | MS.gene41646:intron | 25.0% |
| !!! | TAACTTGTTTTTTTCAGCTT+TGG | - | chr3.4:88498236-88498255 | None:intergenic | 25.0% |
| !!! | TAATTTTAACAACGAGAGTT+GGG | + | chr3.4:88493482-88493501 | MS.gene41646:intron | 25.0% |
| !!! | TATTTGTTGATGCTCATTTT+TGG | + | chr3.4:88496603-88496622 | MS.gene41646:intron | 25.0% |
| !!! | TCCATGTTTTATTTGTGTTA+TGG | - | chr3.4:88495238-88495257 | None:intergenic | 25.0% |
| !!! | TGCTTATATTTTAGATCAGA+GGG | + | chr3.4:88495746-88495765 | MS.gene41646:intron | 25.0% |
| !!! | TTCAATCATTTTTTAGGGAA+GGG | + | chr3.4:88493845-88493864 | MS.gene41646:intron | 25.0% |
| !!! | TTTTATTTCTAACACATCAG+TGG | + | chr3.4:88497137-88497156 | MS.gene41646:intron | 25.0% |
| !!! | TTTTCTCTAGAAATGAAGAA+TGG | - | chr3.4:88499454-88499473 | None:intergenic | 25.0% |
| AAAAATCACGATAGAGTTCA+AGG | - | chr3.4:88493723-88493742 | None:intergenic | 30.0% | |
| AAAATTCCTAAACTACTTCC+TGG | - | chr3.4:88495170-88495189 | None:intergenic | 30.0% | |
| AAATTCCTAAACTACTTCCT+GGG | - | chr3.4:88495169-88495188 | None:intergenic | 30.0% | |
| AAGCAAGTTATCAAGAAAGT+AGG | + | chr3.4:88496172-88496191 | MS.gene41646:CDS | 30.0% | |
| AATAGAATTACCTCTTGTGA+AGG | + | chr3.4:88493596-88493615 | MS.gene41646:intron | 30.0% | |
| ACACCAACGTTAAATGAAAA+TGG | - | chr3.4:88492795-88492814 | None:intergenic | 30.0% | |
| ACCAAAAAACTTCTACGTAA+CGG | - | chr3.4:88492825-88492844 | None:intergenic | 30.0% | |
| ATAGAATTACCTCTTGTGAA+GGG | + | chr3.4:88493597-88493616 | MS.gene41646:intron | 30.0% | |
| ATAGCACCTGATCATATAAT+TGG | - | chr3.4:88494594-88494613 | None:intergenic | 30.0% | |
| ATAGGGATGTAAGGTAAAAA+TGG | - | chr3.4:88499065-88499084 | None:intergenic | 30.0% | |
| ATATTAGTGCTCAACTTATG+AGG | - | chr3.4:88496397-88496416 | None:intergenic | 30.0% | |
| ATTTACACTGATGTGTAACA+TGG | - | chr3.4:88498426-88498445 | None:intergenic | 30.0% | |
| CAAAACGTTCATCAAATTTG+AGG | + | chr3.4:88496451-88496470 | MS.gene41646:CDS | 30.0% | |
| CAAATAATTAATTCCTGTGC+AGG | + | chr3.4:88498778-88498797 | MS.gene41646:intron | 30.0% | |
| CACCAACGTTAAATGAAAAT+GGG | - | chr3.4:88492794-88492813 | None:intergenic | 30.0% | |
| CATTAAGGATGTTCATTAAC+CGG | - | chr3.4:88494321-88494340 | None:intergenic | 30.0% | |
| CGAACAATAAGATCTTGATA+AGG | - | chr3.4:88497587-88497606 | None:intergenic | 30.0% | |
| CGATCATAATCTTGTAAACT+TGG | - | chr3.4:88497274-88497293 | None:intergenic | 30.0% | |
| CTATTCGATATCCTAGAAAA+AGG | - | chr3.4:88496249-88496268 | None:intergenic | 30.0% | |
| CTGCAAAATTGCTTATTACA+AGG | + | chr3.4:88499025-88499044 | MS.gene41646:CDS | 30.0% | |
| CTTCCCTAAAAAATGATTGA+AGG | - | chr3.4:88493846-88493865 | None:intergenic | 30.0% | |
| GATCCTCTATTTGTAACTTT+GGG | + | chr3.4:88493937-88493956 | MS.gene41646:CDS | 30.0% | |
| GATTGGATGGAAAAGATAAA+TGG | + | chr3.4:88497059-88497078 | MS.gene41646:CDS | 30.0% | |
| GATTTCTCTTTGTGAAAGAA+TGG | + | chr3.4:88496137-88496156 | MS.gene41646:CDS | 30.0% | |
| TAGCACCTGATCATATAATT+GGG | - | chr3.4:88494593-88494612 | None:intergenic | 30.0% | |
| TATACTTGATGTGGTTTCAT+AGG | + | chr3.4:88494276-88494295 | MS.gene41646:intron | 30.0% | |
| TCTCAAAGCAATAGAGAATT+TGG | - | chr3.4:88494113-88494132 | None:intergenic | 30.0% | |
| TGACTGAAACATAGTTAAGA+CGG | - | chr3.4:88498056-88498075 | None:intergenic | 30.0% | |
| TGATCCTCTATTTGTAACTT+TGG | + | chr3.4:88493936-88493955 | MS.gene41646:CDS | 30.0% | |
| TGCAAAGTATACATCTTTGA+GGG | - | chr3.4:88496926-88496945 | None:intergenic | 30.0% | |
| TTAACTATGTTTCAGTCACT+GGG | + | chr3.4:88498058-88498077 | MS.gene41646:CDS | 30.0% | |
| TTACAAATAGAGGATCACTA+TGG | - | chr3.4:88493933-88493952 | None:intergenic | 30.0% | |
| TTCAAGTAAAGTTCAGCTAA+TGG | + | chr3.4:88498843-88498862 | MS.gene41646:CDS | 30.0% | |
| TTCAGATGATTTATTAAGGG+TGG | - | chr3.4:88497329-88497348 | None:intergenic | 30.0% | |
| TTCGTAACCTCAATAATGAA+AGG | - | chr3.4:88495847-88495866 | None:intergenic | 30.0% | |
| TTGTAAAAGTTAGTTAGTGC+CGG | - | chr3.4:88497777-88497796 | None:intergenic | 30.0% | |
| ! | AATCCAATGATAGAGAGTAT+AGG | - | chr3.4:88499083-88499102 | None:intergenic | 30.0% |
| ! | ATCCAATGATAGAGAGTATA+GGG | - | chr3.4:88499082-88499101 | None:intergenic | 30.0% |
| ! | CGATGATCTTATTTCACTAA+AGG | + | chr3.4:88498279-88498298 | MS.gene41646:CDS | 30.0% |
| ! | CTAGAAATGAAGAATGGATT+TGG | - | chr3.4:88499448-88499467 | None:intergenic | 30.0% |
| ! | CTTTTTGCTAACTCAAACTT+TGG | + | chr3.4:88498376-88498395 | MS.gene41646:intron | 30.0% |
| ! | GATATTCTAAGAAAGGTTAG+CGG | + | chr3.4:88497394-88497413 | MS.gene41646:CDS | 30.0% |
| ! | GCAAAAAGTTTTCAGAAGTT+TGG | - | chr3.4:88498732-88498751 | None:intergenic | 30.0% |
| ! | GCACAATAATTAGAAAGCAT+TGG | - | chr3.4:88493994-88494013 | None:intergenic | 30.0% |
| ! | TGTTAGTAGTTAGTTCTTAG+GGG | - | chr3.4:88499223-88499242 | None:intergenic | 30.0% |
| ! | TTCAGAAGTTTGGACTTTTT+GGG | - | chr3.4:88498722-88498741 | None:intergenic | 30.0% |
| ! | TTCCCATTTTCATTTAACGT+TGG | + | chr3.4:88492789-88492808 | MS.gene41646:intron | 30.0% |
| ! | TTTCAGAAGTTTGGACTTTT+TGG | - | chr3.4:88498723-88498742 | None:intergenic | 30.0% |
| !! | AAAAGGTTTTGTAGTAACTC+AGG | + | chr3.4:88494216-88494235 | MS.gene41646:intron | 30.0% |
| !! | CTAAATGCTATTGATTCAAG+AGG | + | chr3.4:88498958-88498977 | MS.gene41646:CDS | 30.0% |
| !! | CTGCTTATATTTTAGATCAG+AGG | + | chr3.4:88495745-88495764 | MS.gene41646:intron | 30.0% |
| !! | GAAGAAGAGATTTGAGTTTT+TGG | + | chr3.4:88495620-88495639 | MS.gene41646:CDS | 30.0% |
| !! | TTTACAAACTGTAGCTTGTT+GGG | + | chr3.4:88497790-88497809 | MS.gene41646:intron | 30.0% |
| !! | TTTTACAAACTGTAGCTTGT+TGG | + | chr3.4:88497789-88497808 | MS.gene41646:intron | 30.0% |
| !!! | CTTCAATCATTTTTTAGGGA+AGG | + | chr3.4:88493844-88493863 | MS.gene41646:intron | 30.0% |
| !!! | TTTTTTGTTCTTGATAGTCG+TGG | + | chr3.4:88496492-88496511 | MS.gene41646:CDS | 30.0% |
| AAAATTATTAACGCCGTCTG+TGG | + | chr3.4:88492870-88492889 | MS.gene41646:intron | 35.0% | |
| AAACATGGATTTCATGCTAC+AGG | + | chr3.4:88495249-88495268 | MS.gene41646:intron | 35.0% | |
| AAACCACATCAAGTATAGTC+AGG | - | chr3.4:88494273-88494292 | None:intergenic | 35.0% | |
| AAATTATGCCGACAGTTTCT+AGG | - | chr3.4:88493468-88493487 | None:intergenic | 35.0% | |
| AAATTATTAACGCCGTCTGT+GGG | + | chr3.4:88492871-88492890 | MS.gene41646:intron | 35.0% | |
| AAGTAAAGTTCAGCTAATGG+AGG | + | chr3.4:88498846-88498865 | MS.gene41646:CDS | 35.0% | |
| AAGTAGAATGGAATGAAGTG+AGG | - | chr3.4:88496335-88496354 | None:intergenic | 35.0% | |
| AATTATGCCGACAGTTTCTA+GGG | - | chr3.4:88493467-88493486 | None:intergenic | 35.0% | |
| ACGATAGAGTTCAAGGATAT+TGG | - | chr3.4:88493716-88493735 | None:intergenic | 35.0% | |
| AGACTTACAGAAGAATAAGC+AGG | + | chr3.4:88497348-88497367 | MS.gene41646:CDS | 35.0% | |
| AGCAAGAGAAAGTTACAATG+AGG | + | chr3.4:88496110-88496129 | MS.gene41646:CDS | 35.0% | |
| AGCTTCCCAATTATATGATC+AGG | + | chr3.4:88494585-88494604 | MS.gene41646:CDS | 35.0% | |
| AGTAGAATGGAATGAAGTGA+GGG | - | chr3.4:88496334-88496353 | None:intergenic | 35.0% | |
| AGTTGAGCACTAATATGTGT+AGG | + | chr3.4:88496401-88496420 | MS.gene41646:intron | 35.0% | |
| ATAGAGAATTTGGCCATTAC+AGG | - | chr3.4:88494103-88494122 | None:intergenic | 35.0% | |
| ATCCCTATACTCTCTATCAT+TGG | + | chr3.4:88499077-88499096 | MS.gene41646:intron | 35.0% | |
| ATGAATATTCACTTCTCCAC+TGG | - | chr3.4:88496226-88496245 | None:intergenic | 35.0% | |
| ATGCTGAGCAATCAGATTTA+AGG | + | chr3.4:88496879-88496898 | MS.gene41646:CDS | 35.0% | |
| ATTATGATCGATTAGGGAGT+GGG | + | chr3.4:88497284-88497303 | MS.gene41646:CDS | 35.0% | |
| ATTTGATAGAGAGACATTCC+AGG | + | chr3.4:88495421-88495440 | MS.gene41646:intron | 35.0% | |
| CAATGCAAGAACAATATTCG+AGG | + | chr3.4:88495451-88495470 | MS.gene41646:CDS | 35.0% | |
| CACTATATACCTTGACATCA+AGG | - | chr3.4:88494351-88494370 | None:intergenic | 35.0% | |
| CATATTCCATCCTGTATTCT+AGG | + | chr3.4:88495572-88495591 | MS.gene41646:intron | 35.0% | |
| CATCAAGGATTTCGACATTA+AGG | - | chr3.4:88494336-88494355 | None:intergenic | 35.0% | |
| CTATGCAATACTTACCCAAA+AGG | - | chr3.4:88498154-88498173 | None:intergenic | 35.0% | |
| CTCAAAGATGTATACTTTGC+AGG | + | chr3.4:88496925-88496944 | MS.gene41646:CDS | 35.0% | |
| CTCATAATGCAGTAATGCAA+TGG | - | chr3.4:88498991-88499010 | None:intergenic | 35.0% | |
| CTGAACAAGTATTAAGACGA+AGG | + | chr3.4:88499160-88499179 | MS.gene41646:intron | 35.0% | |
| CTGCAAAGTATACATCTTTG+AGG | - | chr3.4:88496927-88496946 | None:intergenic | 35.0% | |
| CTTAACTATGTTTCAGTCAC+TGG | + | chr3.4:88498057-88498076 | MS.gene41646:CDS | 35.0% | |
| GAAACTTGATGTCAAAGTGT+GGG | + | chr3.4:88498024-88498043 | MS.gene41646:CDS | 35.0% | |
| GAAATTCCAGAAAGTGAGAA+TGG | - | chr3.4:88495007-88495026 | None:intergenic | 35.0% | |
| GACTTACAGAAGAATAAGCA+GGG | + | chr3.4:88497349-88497368 | MS.gene41646:CDS | 35.0% | |
| GATTGTATCTTCTATGCTGT+AGG | + | chr3.4:88496068-88496087 | MS.gene41646:intron | 35.0% | |
| GGAAAGATTCATTCATGCAA+AGG | + | chr3.4:88498300-88498319 | MS.gene41646:CDS | 35.0% | |
| TAACATTCCCTAGAAACTGT+CGG | + | chr3.4:88493457-88493476 | MS.gene41646:intron | 35.0% | |
| TCAATCAGCTATATTCACAG+CGG | + | chr3.4:88496726-88496745 | MS.gene41646:CDS | 35.0% | |
| TCACAAGTCATGTTTAATGC+AGG | - | chr3.4:88494506-88494525 | None:intergenic | 35.0% | |
| TCATCTTCGATACTTTCAAC+AGG | + | chr3.4:88495668-88495687 | MS.gene41646:CDS | 35.0% | |
| TCATTCCAACATCACTTGTT+AGG | - | chr3.4:88498909-88498928 | None:intergenic | 35.0% | |
| TCTAGGGAATGTTATACTAC+AGG | - | chr3.4:88493451-88493470 | None:intergenic | 35.0% | |
| TGAAACTTGATGTCAAAGTG+TGG | + | chr3.4:88498023-88498042 | MS.gene41646:CDS | 35.0% | |
| TGAATATTCACTTCTCCACT+GGG | - | chr3.4:88496225-88496244 | None:intergenic | 35.0% | |
| TGCATTACTGCATTATGAGA+GGG | + | chr3.4:88498992-88499011 | MS.gene41646:CDS | 35.0% | |
| TGGTGCTCTTCATAATATTG+AGG | + | chr3.4:88495596-88495615 | MS.gene41646:CDS | 35.0% | |
| TGTACTTTCTACATCCTTTG+TGG | - | chr3.4:88493150-88493169 | None:intergenic | 35.0% | |
| TGTTCACTCAATTGCTGTAT+TGG | + | chr3.4:88494782-88494801 | MS.gene41646:intron | 35.0% | |
| TTATTTGCATGAGCTATCCA+AGG | - | chr3.4:88493349-88493368 | None:intergenic | 35.0% | |
| TTGCATTACTGCATTATGAG+AGG | + | chr3.4:88498991-88499010 | MS.gene41646:CDS | 35.0% | |
| TTGGGTTTAGTCTATCAGAA+GGG | + | chr3.4:88493500-88493519 | MS.gene41646:intron | 35.0% | |
| TTGTGTTATGGTCATGAGAA+AGG | - | chr3.4:88495226-88495245 | None:intergenic | 35.0% | |
| TTTATTAAGGGTGGAGTTCT+TGG | - | chr3.4:88497320-88497339 | None:intergenic | 35.0% | |
| TTTCAACCATTCTCACTTTC+TGG | + | chr3.4:88494998-88495017 | MS.gene41646:intron | 35.0% | |
| ! | AAACTGATGACACTCCTTTT+GGG | + | chr3.4:88498137-88498156 | MS.gene41646:CDS | 35.0% |
| ! | AACTTAGTTCTCCACATTGT+AGG | - | chr3.4:88493533-88493552 | None:intergenic | 35.0% |
| ! | ATAGAGAGTATAGGGATGTA+AGG | - | chr3.4:88499074-88499093 | None:intergenic | 35.0% |
| ! | ATCTTCTATGCTGTAGGTTT+TGG | + | chr3.4:88496074-88496093 | MS.gene41646:intron | 35.0% |
| ! | ATTTAAGACCATGAGAGTTG+TGG | - | chr3.4:88493804-88493823 | None:intergenic | 35.0% |
| ! | GAAAGAAGATGGTGACTTTT+TGG | - | chr3.4:88498572-88498591 | None:intergenic | 35.0% |
| ! | GTTAGTAGTTAGTTCTTAGG+GGG | - | chr3.4:88499222-88499241 | None:intergenic | 35.0% |
| ! | TATACATCCGAATGACTTGT+TGG | - | chr3.4:88499488-88499507 | None:intergenic | 35.0% |
| ! | TGTTATACTACAGGCTTGTT+TGG | - | chr3.4:88493442-88493461 | None:intergenic | 35.0% |
| !! | ATGCTATTGATTCAAGAGGT+AGG | + | chr3.4:88498962-88498981 | MS.gene41646:CDS | 35.0% |
| !! | CTGCTTTGGAAAAAAATTGC+AGG | + | chr3.4:88497013-88497032 | MS.gene41646:intron | 35.0% |
| !! | GAAGAGATTTGAGTTTTTGG+AGG | + | chr3.4:88495623-88495642 | MS.gene41646:CDS | 35.0% |
| !! | TTCTAGGATATCGAATAGTG+TGG | + | chr3.4:88496251-88496270 | MS.gene41646:CDS | 35.0% |
| !!! | ACCGTTACGTAGAAGTTTTT+TGG | + | chr3.4:88492821-88492840 | MS.gene41646:intron | 35.0% |
| !!! | GTTTTGAAAGATATCCCTGT+CGG | - | chr3.4:88496437-88496456 | None:intergenic | 35.0% |
| AAGTATTAAGACGAAGGTCC+AGG | + | chr3.4:88499166-88499185 | MS.gene41646:intron | 40.0% | |
| AAGTCACCATCTTCTTTCAG+TGG | + | chr3.4:88498574-88498593 | MS.gene41646:CDS | 40.0% | |
| AAGTTAAGCCACAACTCTCA+TGG | + | chr3.4:88493793-88493812 | MS.gene41646:intron | 40.0% | |
| AATCACTACGCTCAAGATGT+TGG | + | chr3.4:88493119-88493138 | MS.gene41646:CDS | 40.0% | |
| ACATCTTAGTTGGTTACAGC+CGG | + | chr3.4:88497755-88497774 | MS.gene41646:intron | 40.0% | |
| ACATTAAATGTAGGCACCTC+TGG | - | chr3.4:88493570-88493589 | None:intergenic | 40.0% | |
| ACCAACTAAGATGTTGGTGT+AGG | - | chr3.4:88497749-88497768 | None:intergenic | 40.0% | |
| ACCTACACCAACATCTTAGT+TGG | + | chr3.4:88497745-88497764 | MS.gene41646:intron | 40.0% | |
| ACGACAAGAAAGCAGTGTAT+CGG | + | chr3.4:88498627-88498646 | MS.gene41646:CDS | 40.0% | |
| ACTTGATGTGGTTTCATAGG+TGG | + | chr3.4:88494279-88494298 | MS.gene41646:intron | 40.0% | |
| AGAACCATAAGGTCCATTCA+AGG | - | chr3.4:88496202-88496221 | None:intergenic | 40.0% | |
| AGAACCTGTTGACGAAACAT+GGG | - | chr3.4:88492716-88492735 | None:intergenic | 40.0% | |
| AGATGTTGGAAGTTCCACAA+AGG | + | chr3.4:88493133-88493152 | MS.gene41646:CDS | 40.0% | |
| AGTATTAAGACGAAGGTCCA+GGG | + | chr3.4:88499167-88499186 | MS.gene41646:intron | 40.0% | |
| AGTCACCATCTTCTTTCAGT+GGG | + | chr3.4:88498575-88498594 | MS.gene41646:CDS | 40.0% | |
| AGTCATTGCCTCCTTATTGT+CGG | + | chr3.4:88497082-88497101 | MS.gene41646:CDS | 40.0% | |
| AGTCTTCACTCTTGCAACTA+AGG | + | chr3.4:88497970-88497989 | MS.gene41646:intron | 40.0% | |
| ATACACTGCTTTCTTGTCGT+TGG | - | chr3.4:88498627-88498646 | None:intergenic | 40.0% | |
| ATGAGAAAAAAAGCCTGCAC+AGG | - | chr3.4:88498794-88498813 | None:intergenic | 40.0% | |
| CATGTTGTCATATGCTACCT+TGG | + | chr3.4:88493329-88493348 | MS.gene41646:intron | 40.0% | |
| CATTACTCTTCACTCTGCTT+TGG | + | chr3.4:88496999-88497018 | MS.gene41646:intron | 40.0% | |
| CCTCCCAAAGTTACAAATAG+AGG | - | chr3.4:88493943-88493962 | None:intergenic | 40.0% | |
| CCTCTATTTGTAACTTTGGG+AGG | + | chr3.4:88493940-88493959 | MS.gene41646:CDS | 40.0% | |
| CCTTCTCACATCAACAATCA+AGG | + | chr3.4:88496853-88496872 | MS.gene41646:CDS | 40.0% | |
| CCTTCTTTATCTACAGCAAG+TGG | - | chr3.4:88499383-88499402 | None:intergenic | 40.0% | |
| CCTTGATTGTTGATGTGAGA+AGG | - | chr3.4:88496856-88496875 | None:intergenic | 40.0% | |
| CTAATGGAGGACATACAAGA+GGG | + | chr3.4:88498859-88498878 | MS.gene41646:CDS | 40.0% | |
| CTCGTATGCATTGAATGTTC+CGG | + | chr3.4:88497481-88497500 | MS.gene41646:CDS | 40.0% | |
| CTGAAACATAGTTAAGACGG+AGG | - | chr3.4:88498053-88498072 | None:intergenic | 40.0% | |
| GAAAGTAGGTTGTCCTTGAA+TGG | + | chr3.4:88496186-88496205 | MS.gene41646:CDS | 40.0% | |
| GAAATAAGATCATCGTGCTC+TGG | - | chr3.4:88498274-88498293 | None:intergenic | 40.0% | |
| GAGAGAAATCAGTACACACA+AGG | + | chr3.4:88494129-88494148 | MS.gene41646:CDS | 40.0% | |
| GATTATGATCGATTAGGGAG+TGG | + | chr3.4:88497283-88497302 | MS.gene41646:CDS | 40.0% | |
| GCTGGAACCTTTCATTATTG+AGG | + | chr3.4:88495837-88495856 | MS.gene41646:CDS | 40.0% | |
| GCTGTAACCAACTAAGATGT+TGG | - | chr3.4:88497755-88497774 | None:intergenic | 40.0% | |
| GTAAATGTAGCTTCAGGGTT+TGG | + | chr3.4:88493084-88493103 | MS.gene41646:intron | 40.0% | |
| GTACACACAAGGAACTTCTT+CGG | + | chr3.4:88494140-88494159 | MS.gene41646:CDS | 40.0% | |
| GTAGAATGGAATGAAGTGAG+GGG | - | chr3.4:88496333-88496352 | None:intergenic | 40.0% | |
| GTGGACATCAATTCTGTTAG+TGG | + | chr3.4:88498668-88498687 | MS.gene41646:CDS | 40.0% | |
| GTTGGGTTTAGTCTATCAGA+AGG | + | chr3.4:88493499-88493518 | MS.gene41646:intron | 40.0% | |
| TAAGCATGTGTGAAACTGCT+CGG | - | chr3.4:88493390-88493409 | None:intergenic | 40.0% | |
| TACGTCAAGTAGCTCATCTT+TGG | + | chr3.4:88495338-88495357 | MS.gene41646:intron | 40.0% | |
| TCAGGGTTTGGAAGAAAATG+TGG | + | chr3.4:88493096-88493115 | MS.gene41646:CDS | 40.0% | |
| TGATAGCCCTTAGGTGAATA+TGG | - | chr3.4:88499265-88499284 | None:intergenic | 40.0% | |
| TGCTCAACTTATGAGGCAAA+TGG | - | chr3.4:88496390-88496409 | None:intergenic | 40.0% | |
| TGGAGCATATGCTAAATGAC+CGG | + | chr3.4:88494299-88494318 | MS.gene41646:CDS | 40.0% | |
| TGTCCTGACTATACTTGATG+TGG | + | chr3.4:88494267-88494286 | MS.gene41646:intron | 40.0% | |
| TGTCGAAATCCTTGATGTCA+AGG | + | chr3.4:88494339-88494358 | MS.gene41646:CDS | 40.0% | |
| TTAGATCTGCTCCATACTGT+AGG | - | chr3.4:88498942-88498961 | None:intergenic | 40.0% | |
| TTATGATCGATTAGGGAGTG+GGG | + | chr3.4:88497285-88497304 | MS.gene41646:CDS | 40.0% | |
| TTATTGTCGGTACAGACACT+AGG | + | chr3.4:88497095-88497114 | MS.gene41646:CDS | 40.0% | |
| TTCCATCCTGTATTCTAGGT+TGG | + | chr3.4:88495576-88495595 | MS.gene41646:intron | 40.0% | |
| TTCTTGCATTGTGCAATTCC+TGG | - | chr3.4:88495442-88495461 | None:intergenic | 40.0% | |
| TTGTCCTTGAATGGACCTTA+TGG | + | chr3.4:88496195-88496214 | MS.gene41646:CDS | 40.0% | |
| TTTCATCAGGAACAACTCCA+GGG | - | chr3.4:88496808-88496827 | None:intergenic | 40.0% | |
| ! | AATGCCTGCACTGTTTTCAT+TGG | - | chr3.4:88496759-88496778 | None:intergenic | 40.0% |
| ! | ACTGCCCTTGAAAATTTTGG+AGG | + | chr3.4:88493904-88493923 | MS.gene41646:CDS | 40.0% |
| ! | AGCTGATTGAGACTCTGAAA+TGG | - | chr3.4:88496716-88496735 | None:intergenic | 40.0% |
| ! | CAAACTGATGACACTCCTTT+TGG | + | chr3.4:88498136-88498155 | MS.gene41646:CDS | 40.0% |
| ! | CAAATGGATTCTAATGCACG+TGG | - | chr3.4:88496374-88496393 | None:intergenic | 40.0% |
| ! | CAGATTTAAGGTTCTGCTTC+AGG | + | chr3.4:88496891-88496910 | MS.gene41646:CDS | 40.0% |
| ! | CGTGCTACAGATTTTTCATC+AGG | - | chr3.4:88496821-88496840 | None:intergenic | 40.0% |
| ! | CTTACTGTTTGATAGCCCTT+AGG | - | chr3.4:88499274-88499293 | None:intergenic | 40.0% |
| ! | GCAACTGCCCTTGAAAATTT+TGG | + | chr3.4:88493901-88493920 | MS.gene41646:CDS | 40.0% |
| ! | GCCTCCTCCAAAATTTTCAA+GGG | - | chr3.4:88493911-88493930 | None:intergenic | 40.0% |
| ! | GTATCGGCACATTGTCAAAT+CGG | + | chr3.4:88498643-88498662 | MS.gene41646:CDS | 40.0% |
| ! | TAGTGTCTGTACCGACAATA+AGG | - | chr3.4:88497096-88497115 | None:intergenic | 40.0% |
| ! | TCAACAAGTGAGTTGAACTG+AGG | - | chr3.4:88494868-88494887 | None:intergenic | 40.0% |
| ! | TCTTTTCCATCCAATCCATC+TGG | - | chr3.4:88497055-88497074 | None:intergenic | 40.0% |
| ! | TGGTAATGAGTCGATAATGC+TGG | - | chr3.4:88497254-88497273 | None:intergenic | 40.0% |
| ! | TTTTCATCAGGAACAACTCC+AGG | - | chr3.4:88496809-88496828 | None:intergenic | 40.0% |
| !! | AATGACAAATGTGCCGATTG+CGG | + | chr3.4:88497418-88497437 | MS.gene41646:CDS | 40.0% |
| !! | CAGAGAAAGTATTTGTTCGG+CGG | + | chr3.4:88498543-88498562 | MS.gene41646:CDS | 40.0% |
| !! | CCACTTGCTGTAGATAAAGA+AGG | + | chr3.4:88499380-88499399 | MS.gene41646:CDS | 40.0% |
| !! | GATTGAGACTCTGAAATGGT+TGG | - | chr3.4:88496712-88496731 | None:intergenic | 40.0% |
| !!! | TCATTTTTTAGGGAAGGGCT+TGG | + | chr3.4:88493850-88493869 | MS.gene41646:intron | 40.0% |
| AAGCATGTGTGAAACTGCTC+GGG | - | chr3.4:88493389-88493408 | None:intergenic | 45.0% | |
| AAGGTGTAGTCCAACGGTAT+GGG | + | chr3.4:88499128-88499147 | MS.gene41646:intron | 45.0% | |
| AATCCAGTTCTACCAAACCC+AGG | + | chr3.4:88495149-88495168 | MS.gene41646:intron | 45.0% | |
| ACGTACCTCTTCTATGACAG+CGG | - | chr3.4:88495323-88495342 | None:intergenic | 45.0% | |
| ACTCGTTAGCAGCACCAAAA+TGG | + | chr3.4:88495999-88496018 | MS.gene41646:intron | 45.0% | |
| AGAAAATGCGCTTGACCAGA+TGG | + | chr3.4:88497037-88497056 | MS.gene41646:CDS | 45.0% | |
| ATACCGTTGGACTACACCTT+CGG | - | chr3.4:88499128-88499147 | None:intergenic | 45.0% | |
| ATATCAGCAGTTACAGGAGC+TGG | + | chr3.4:88495819-88495838 | MS.gene41646:CDS | 45.0% | |
| ATCGAGCTTCTCCTACAGTA+TGG | + | chr3.4:88498928-88498947 | MS.gene41646:CDS | 45.0% | |
| ATCTCTTTGCGAACTCGGTT+TGG | + | chr3.4:88498083-88498102 | MS.gene41646:CDS | 45.0% | |
| ATCTTAACCCGCACACACTA+AGG | + | chr3.4:88497719-88497738 | MS.gene41646:intron | 45.0% | |
| ATGTGAGAAGGTTCACTGTG+TGG | - | chr3.4:88496844-88496863 | None:intergenic | 45.0% | |
| CACCAACCTAGAATACAGGA+TGG | - | chr3.4:88495581-88495600 | None:intergenic | 45.0% | |
| CATCAAATTTGAGGGCTGAC+TGG | + | chr3.4:88496460-88496479 | MS.gene41646:CDS | 45.0% | |
| CCAAACCCAGGAAGTAGTTT+AGG | + | chr3.4:88495161-88495180 | MS.gene41646:intron | 45.0% | |
| CCAAATTTACCTGTTCCCGA+AGG | + | chr3.4:88499109-88499128 | MS.gene41646:intron | 45.0% | |
| CCTAAACTACTTCCTGGGTT+TGG | - | chr3.4:88495164-88495183 | None:intergenic | 45.0% | |
| CCTTCGGGAACAGGTAAATT+TGG | - | chr3.4:88499112-88499131 | None:intergenic | 45.0% | |
| CGGAACATTCAATGCATACG+AGG | - | chr3.4:88497483-88497502 | None:intergenic | 45.0% | |
| CTCTTGCAACTAAGGTGTGA+TGG | + | chr3.4:88497978-88497997 | MS.gene41646:intron | 45.0% | |
| CTTTGGATGAACTGCAATGC+AGG | - | chr3.4:88498219-88498238 | None:intergenic | 45.0% | |
| GAGAACCTGTTGACGAAACA+TGG | - | chr3.4:88492717-88492736 | None:intergenic | 45.0% | |
| GCGTGAATTCGGTCCAAATT+TGG | - | chr3.4:88495719-88495738 | None:intergenic | 45.0% | |
| GCTAATGGAGGACATACAAG+AGG | + | chr3.4:88498858-88498877 | MS.gene41646:CDS | 45.0% | |
| GGACCAACCAACAAGTCATT+CGG | + | chr3.4:88499478-88499497 | MS.gene41646:CDS | 45.0% | |
| GGGAAATCTCTTTGCGAACT+CGG | + | chr3.4:88498078-88498097 | MS.gene41646:CDS | 45.0% | |
| GTAGGGATATCAGCAGTTAC+AGG | + | chr3.4:88495813-88495832 | MS.gene41646:intron | 45.0% | |
| GTCACCATCTTCTTTCAGTG+GGG | + | chr3.4:88498576-88498595 | MS.gene41646:CDS | 45.0% | |
| TACGAGGATGCCAAGGTTTA+AGG | - | chr3.4:88497467-88497486 | None:intergenic | 45.0% | |
| TAGCAGGAAGAATCAATCCC+TGG | - | chr3.4:88499187-88499206 | None:intergenic | 45.0% | |
| TAGTGTTTGAGCCAGCTGTT+AGG | - | chr3.4:88497856-88497875 | None:intergenic | 45.0% | |
| TCTCTTTGCGAACTCGGTTT+GGG | + | chr3.4:88498084-88498103 | MS.gene41646:CDS | 45.0% | |
| TGAATCAGCTGCAAGTGGAA+AGG | + | chr3.4:88496287-88496306 | MS.gene41646:CDS | 45.0% | |
| TGTGCCAATGAAAACAGTGC+AGG | + | chr3.4:88496752-88496771 | MS.gene41646:CDS | 45.0% | |
| TTCCTGCAAGCATCACTTGA+AGG | - | chr3.4:88494545-88494564 | None:intergenic | 45.0% | |
| TTGCAAGCTATCCTAACAGC+TGG | + | chr3.4:88497842-88497861 | MS.gene41646:intron | 45.0% | |
| TTTCGAATCTAGACTGCCAG+AGG | + | chr3.4:88493551-88493570 | MS.gene41646:intron | 45.0% | |
| ! | AGAGCACCAACCTAGAATAC+AGG | - | chr3.4:88495585-88495604 | None:intergenic | 45.0% |
| ! | AGCAGAAAGGAGCGTGAATT+CGG | - | chr3.4:88495730-88495749 | None:intergenic | 45.0% |
| ! | AGTAGTTAGTTCTTAGGGGG+AGG | - | chr3.4:88499219-88499238 | None:intergenic | 45.0% |
| ! | CTGAGTAGGTTGCTTTCTTC+AGG | + | chr3.4:88496779-88496798 | MS.gene41646:CDS | 45.0% |
| ! | CTGTTAGGATAGCTTGCAAG+AGG | - | chr3.4:88497841-88497860 | None:intergenic | 45.0% |
| ! | GCTTTTAACCATGTGGTCGT+GGG | - | chr3.4:88492904-88492923 | None:intergenic | 45.0% |
| ! | GGCCTCCTCCAAAATTTTCA+AGG | - | chr3.4:88493912-88493931 | None:intergenic | 45.0% |
| ! | TCCAACATCACTTGTTAGGC+AGG | - | chr3.4:88498905-88498924 | None:intergenic | 45.0% |
| ! | TGTCTGTACCGACAATAAGG+AGG | - | chr3.4:88497093-88497112 | None:intergenic | 45.0% |
| ! | TTCTCAGCTGACTCAGAAAG+TGG | + | chr3.4:88497214-88497233 | MS.gene41646:CDS | 45.0% |
| ! | TTGCTTTCTTCAGGTTACCC+TGG | + | chr3.4:88496788-88496807 | MS.gene41646:CDS | 45.0% |
| !! | CATCCGAATGACTTGTTGGT+TGG | - | chr3.4:88499484-88499503 | None:intergenic | 45.0% |
| !! | GCCCTTGAAAATTTTGGAGG+AGG | + | chr3.4:88493907-88493926 | MS.gene41646:CDS | 45.0% |
| !! | GTTAGTGGAGAAGCACTATC+TGG | + | chr3.4:88498683-88498702 | MS.gene41646:CDS | 45.0% |
| !! | TAGGTTAGCCTTAGTGTGTG+CGG | - | chr3.4:88497730-88497749 | None:intergenic | 45.0% |
| !! | GAAATAAAAAAAAAAAAAAA+AGG | - | chr3.4:88494647-88494666 | None:intergenic | 5.0% |
| !! | TTAAAATAAATTAGATATAT+TGG | + | chr3.4:88495189-88495208 | MS.gene41646:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTATTTCA+TGG | + | chr3.4:88494648-88494667 | MS.gene41646:intron | 5.0% |
| ACAGTGCAGGCATTCTGAGT+AGG | + | chr3.4:88496765-88496784 | MS.gene41646:CDS | 50.0% | |
| ACCAAGATTACGGTGAACGC+CGG | - | chr3.4:88497503-88497522 | None:intergenic | 50.0% | |
| AGCCTTCAAGTGATGCTTGC+AGG | + | chr3.4:88494540-88494559 | MS.gene41646:intron | 50.0% | |
| AGGTGTAGTCCAACGGTATG+GGG | + | chr3.4:88499129-88499148 | MS.gene41646:intron | 50.0% | |
| AGGTTTAAGGATGCCCAGTC+TGG | - | chr3.4:88497454-88497473 | None:intergenic | 50.0% | |
| AGTGATGCTTGCAGGAAGCT+CGG | + | chr3.4:88494548-88494567 | MS.gene41646:intron | 50.0% | |
| ATGCGCTTGACCAGATGGAT+TGG | + | chr3.4:88497042-88497061 | MS.gene41646:CDS | 50.0% | |
| ATTAGCCGTCTTAGCTCAGC+TGG | - | chr3.4:88492938-88492957 | None:intergenic | 50.0% | |
| CAAGGAACTTCTTCGGTCAC+AGG | + | chr3.4:88494147-88494166 | MS.gene41646:CDS | 50.0% | |
| CAATGCATACGAGGATGCCA+AGG | - | chr3.4:88497474-88497493 | None:intergenic | 50.0% | |
| CCATAGGTTCCCTTCACAAG+AGG | - | chr3.4:88493609-88493628 | None:intergenic | 50.0% | |
| CCTCTTGTGAAGGGAACCTA+TGG | + | chr3.4:88493606-88493625 | MS.gene41646:intron | 50.0% | |
| CGAGGAAGCTCGTTTCAATC+TGG | + | chr3.4:88495469-88495488 | MS.gene41646:CDS | 50.0% | |
| CTCTACCAGCTGAGCTAAGA+CGG | + | chr3.4:88492930-88492949 | MS.gene41646:intron | 50.0% | |
| CTCTCCCATGTTTCGTCAAC+AGG | + | chr3.4:88492709-88492728 | MS.gene41646:CDS | 50.0% | |
| CTTAAGCTTGCACCAGAACC+TGG | + | chr3.4:88499413-88499432 | MS.gene41646:CDS | 50.0% | |
| GACTGGGCATCCTTAAACCT+TGG | + | chr3.4:88497454-88497473 | MS.gene41646:CDS | 50.0% | |
| GCACATTGTCAAATCGGACG+TGG | + | chr3.4:88498649-88498668 | MS.gene41646:CDS | 50.0% | |
| GCCTGCCTAACAAGTGATGT+TGG | + | chr3.4:88498901-88498920 | MS.gene41646:CDS | 50.0% | |
| GGTACAGACACTAGGTGGAA+AGG | + | chr3.4:88497103-88497122 | MS.gene41646:CDS | 50.0% | |
| GGTATGAGCAGGACCTGTAA+TGG | + | chr3.4:88494087-88494106 | MS.gene41646:intron | 50.0% | |
| GGTGTGATGGCAATTTGTGC+AGG | + | chr3.4:88497991-88498010 | MS.gene41646:intron | 50.0% | |
| GGTTTAAGGATGCCCAGTCT+GGG | - | chr3.4:88497453-88497472 | None:intergenic | 50.0% | |
| GTAGCTGAATCAGCTGCAAG+TGG | + | chr3.4:88496282-88496301 | MS.gene41646:CDS | 50.0% | |
| GTTGCCCCACTGAAAGAAGA+TGG | - | chr3.4:88498583-88498602 | None:intergenic | 50.0% | |
| TACCGTTGGACTACACCTTC+GGG | - | chr3.4:88499127-88499146 | None:intergenic | 50.0% | |
| TAGGTTCGAGTCATCCGACA+GGG | + | chr3.4:88496420-88496439 | MS.gene41646:intron | 50.0% | |
| TCTCCACTGGGAGAACCATA+AGG | - | chr3.4:88496213-88496232 | None:intergenic | 50.0% | |
| TGGGTCAGGTTTACCGCAAT+CGG | - | chr3.4:88497434-88497453 | None:intergenic | 50.0% | |
| TTCAGTGGGGCAACAAGTGA+TGG | + | chr3.4:88498589-88498608 | MS.gene41646:CDS | 50.0% | |
| TTGTCGGTACAGACACTAGG+TGG | + | chr3.4:88497098-88497117 | MS.gene41646:CDS | 50.0% | |
| ! | AGGGCTAGTGTCCTACAATG+TGG | + | chr3.4:88493519-88493538 | MS.gene41646:intron | 50.0% |
| ! | CTTCCTGGGTTTGGTAGAAC+TGG | - | chr3.4:88495155-88495174 | None:intergenic | 50.0% |
| ! | GAAGGTGTAGTCCAACGGTA+TGG | + | chr3.4:88499127-88499146 | MS.gene41646:intron | 50.0% |
| ! | GCGCATGGCTTTTAACCATG+TGG | - | chr3.4:88492911-88492930 | None:intergenic | 50.0% |
| ! | GGCTTTTAACCATGTGGTCG+TGG | - | chr3.4:88492905-88492924 | None:intergenic | 50.0% |
| ! | GGGTTCTAGTCTGCTTCACT+TGG | + | chr3.4:88498879-88498898 | MS.gene41646:CDS | 50.0% |
| ! | GGTTCTGGTGCAAGCTTAAG+AGG | - | chr3.4:88499413-88499432 | None:intergenic | 50.0% |
| ! | TTCCCGAAGGTGTAGTCCAA+CGG | + | chr3.4:88499122-88499141 | MS.gene41646:intron | 50.0% |
| !! | AGGTTAGCCTTAGTGTGTGC+GGG | - | chr3.4:88497729-88497748 | None:intergenic | 50.0% |
| !! | GAGTTTTTGGAGGCTGTCAC+TGG | + | chr3.4:88495633-88495652 | MS.gene41646:CDS | 50.0% |
| !! | GCTTGACCAGATGGATTGGA+TGG | + | chr3.4:88497046-88497065 | MS.gene41646:CDS | 50.0% |
| !! | GGGGAGGAGAATTTGTTAGC+AGG | - | chr3.4:88499203-88499222 | None:intergenic | 50.0% |
| !! | TTTTAGGGAAGGGCTTGGAG+AGG | + | chr3.4:88493855-88493874 | MS.gene41646:intron | 50.0% |
| CGGTAAACCTGACCCAGACT+GGG | + | chr3.4:88497438-88497457 | MS.gene41646:CDS | 55.0% | |
| GAATCGAACCCACGACCACA+TGG | + | chr3.4:88492893-88492912 | MS.gene41646:intron | 55.0% | |
| GACAGCGGCGACATCAAACT+TGG | - | chr3.4:88495308-88495327 | None:intergenic | 55.0% | |
| GCACCAGAACCTGGCGATAT+CGG | + | chr3.4:88499422-88499441 | MS.gene41646:CDS | 55.0% | |
| GGACCTTATGGTTCTCCCAG+TGG | + | chr3.4:88496207-88496226 | MS.gene41646:CDS | 55.0% | |
| GTAGGTTCGAGTCATCCGAC+AGG | + | chr3.4:88496419-88496438 | MS.gene41646:intron | 55.0% | |
| GTAGTCCAACGGTATGGGGT+TGG | + | chr3.4:88499133-88499152 | MS.gene41646:intron | 55.0% | |
| GTGGGTTCGATTCCCACAGA+CGG | - | chr3.4:88492886-88492905 | None:intergenic | 55.0% | |
| TCCGGCGTTCACCGTAATCT+TGG | + | chr3.4:88497499-88497518 | MS.gene41646:CDS | 55.0% | |
| TGAGGGCTGACTGGAAGAGA+AGG | + | chr3.4:88496469-88496488 | MS.gene41646:CDS | 55.0% | |
| TGGACTACACCTTCGGGAAC+AGG | - | chr3.4:88499121-88499140 | None:intergenic | 55.0% | |
| TGGATTTGGCCGATATCGCC+AGG | - | chr3.4:88499434-88499453 | None:intergenic | 55.0% | |
| TGTCGCCGCTGTCATAGAAG+AGG | + | chr3.4:88495315-88495334 | MS.gene41646:CDS | 55.0% | |
| ! | GGGCTTGGAGAGGCATATGA+TGG | + | chr3.4:88493865-88493884 | MS.gene41646:CDS | 55.0% |
| !! | CTTTGCGAACTCGGTTTGGG+AGG | + | chr3.4:88498087-88498106 | MS.gene41646:CDS | 55.0% |
| AAGGATGCCCAGTCTGGGTC+AGG | - | chr3.4:88497448-88497467 | None:intergenic | 60.0% | |
| AGCTCAGCTGGTAGAGCGCA+TGG | - | chr3.4:88492926-88492945 | None:intergenic | 60.0% | |
| GATGCTTGCAGGAAGCTCGG+AGG | + | chr3.4:88494551-88494570 | MS.gene41646:intron | 60.0% | |
| GCGGTAAACCTGACCCAGAC+TGG | + | chr3.4:88497437-88497456 | MS.gene41646:CDS | 60.0% | |
| GCGTTCCAACCCCATACCGT+TGG | - | chr3.4:88499141-88499160 | None:intergenic | 60.0% | |
| GGAGGCTGTCACTGGAGTCA+TGG | + | chr3.4:88495641-88495660 | MS.gene41646:CDS | 60.0% | |
| TGGCCGATATCGCCAGGTTC+TGG | - | chr3.4:88499428-88499447 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 88492686 | 88499508 | 88492686 | ID=MS.gene41646 |
| chr3.4 | mRNA | 88492686 | 88499508 | 88492686 | ID=MS.gene41646.t1;Parent=MS.gene41646 |
| chr3.4 | exon | 88492686 | 88492730 | 88492686 | ID=MS.gene41646.t1.exon1;Parent=MS.gene41646.t1 |
| chr3.4 | CDS | 88492686 | 88492730 | 88492686 | ID=cds.MS.gene41646.t1;Parent=MS.gene41646.t1 |
| chr3.4 | exon | 88493094 | 88493170 | 88493094 | ID=MS.gene41646.t1.exon2;Parent=MS.gene41646.t1 |
| chr3.4 | CDS | 88493094 | 88493170 | 88493094 | ID=cds.MS.gene41646.t1;Parent=MS.gene41646.t1 |
| chr3.4 | exon | 88493861 | 88493961 | 88493861 | ID=MS.gene41646.t1.exon3;Parent=MS.gene41646.t1 |
| chr3.4 | CDS | 88493861 | 88493961 | 88493861 | ID=cds.MS.gene41646.t1;Parent=MS.gene41646.t1 |
| chr3.4 | exon | 88494098 | 88494168 | 88494098 | ID=MS.gene41646.t1.exon4;Parent=MS.gene41646.t1 |
| chr3.4 | CDS | 88494098 | 88494168 | 88494098 | ID=cds.MS.gene41646.t1;Parent=MS.gene41646.t1 |
| chr3.4 | exon | 88494298 | 88494360 | 88494298 | ID=MS.gene41646.t1.exon5;Parent=MS.gene41646.t1 |
| chr3.4 | CDS | 88494298 | 88494360 | 88494298 | ID=cds.MS.gene41646.t1;Parent=MS.gene41646.t1 |
| chr3.4 | exon | 88494562 | 88494606 | 88494562 | ID=MS.gene41646.t1.exon6;Parent=MS.gene41646.t1 |
| chr3.4 | CDS | 88494562 | 88494606 | 88494562 | ID=cds.MS.gene41646.t1;Parent=MS.gene41646.t1 |
| chr3.4 | exon | 88495271 | 88495336 | 88495271 | ID=MS.gene41646.t1.exon7;Parent=MS.gene41646.t1 |
| chr3.4 | CDS | 88495271 | 88495336 | 88495271 | ID=cds.MS.gene41646.t1;Parent=MS.gene41646.t1 |
| chr3.4 | exon | 88495443 | 88495490 | 88495443 | ID=MS.gene41646.t1.exon8;Parent=MS.gene41646.t1 |
| chr3.4 | CDS | 88495443 | 88495490 | 88495443 | ID=cds.MS.gene41646.t1;Parent=MS.gene41646.t1 |
| chr3.4 | exon | 88495594 | 88495689 | 88495594 | ID=MS.gene41646.t1.exon9;Parent=MS.gene41646.t1 |
| chr3.4 | CDS | 88495594 | 88495689 | 88495594 | ID=cds.MS.gene41646.t1;Parent=MS.gene41646.t1 |
| chr3.4 | exon | 88495817 | 88495858 | 88495817 | ID=MS.gene41646.t1.exon10;Parent=MS.gene41646.t1 |
| chr3.4 | CDS | 88495817 | 88495858 | 88495817 | ID=cds.MS.gene41646.t1;Parent=MS.gene41646.t1 |
| chr3.4 | exon | 88496090 | 88496308 | 88496090 | ID=MS.gene41646.t1.exon11;Parent=MS.gene41646.t1 |
| chr3.4 | CDS | 88496090 | 88496308 | 88496090 | ID=cds.MS.gene41646.t1;Parent=MS.gene41646.t1 |
| chr3.4 | exon | 88496423 | 88496551 | 88496423 | ID=MS.gene41646.t1.exon12;Parent=MS.gene41646.t1 |
| chr3.4 | CDS | 88496423 | 88496551 | 88496423 | ID=cds.MS.gene41646.t1;Parent=MS.gene41646.t1 |
| chr3.4 | exon | 88496722 | 88496946 | 88496722 | ID=MS.gene41646.t1.exon13;Parent=MS.gene41646.t1 |
| chr3.4 | CDS | 88496722 | 88496946 | 88496722 | ID=cds.MS.gene41646.t1;Parent=MS.gene41646.t1 |
| chr3.4 | exon | 88497035 | 88497124 | 88497035 | ID=MS.gene41646.t1.exon14;Parent=MS.gene41646.t1 |
| chr3.4 | CDS | 88497035 | 88497124 | 88497035 | ID=cds.MS.gene41646.t1;Parent=MS.gene41646.t1 |
| chr3.4 | exon | 88497211 | 88497537 | 88497211 | ID=MS.gene41646.t1.exon15;Parent=MS.gene41646.t1 |
| chr3.4 | CDS | 88497211 | 88497537 | 88497211 | ID=cds.MS.gene41646.t1;Parent=MS.gene41646.t1 |
| chr3.4 | exon | 88498013 | 88498158 | 88498013 | ID=MS.gene41646.t1.exon16;Parent=MS.gene41646.t1 |
| chr3.4 | CDS | 88498013 | 88498158 | 88498013 | ID=cds.MS.gene41646.t1;Parent=MS.gene41646.t1 |
| chr3.4 | exon | 88498228 | 88498321 | 88498228 | ID=MS.gene41646.t1.exon17;Parent=MS.gene41646.t1 |
| chr3.4 | CDS | 88498228 | 88498321 | 88498228 | ID=cds.MS.gene41646.t1;Parent=MS.gene41646.t1 |
| chr3.4 | exon | 88498539 | 88498704 | 88498539 | ID=MS.gene41646.t1.exon18;Parent=MS.gene41646.t1 |
| chr3.4 | CDS | 88498539 | 88498704 | 88498539 | ID=cds.MS.gene41646.t1;Parent=MS.gene41646.t1 |
| chr3.4 | exon | 88498800 | 88499046 | 88498800 | ID=MS.gene41646.t1.exon19;Parent=MS.gene41646.t1 |
| chr3.4 | CDS | 88498800 | 88499046 | 88498800 | ID=cds.MS.gene41646.t1;Parent=MS.gene41646.t1 |
| chr3.4 | exon | 88499370 | 88499508 | 88499370 | ID=MS.gene41646.t1.exon20;Parent=MS.gene41646.t1 |
| chr3.4 | CDS | 88499370 | 88499508 | 88499370 | ID=cds.MS.gene41646.t1;Parent=MS.gene41646.t1 |
| Gene Sequence |
| Protein sequence |
