Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055542.t1 | XP_003602755.2 | 99 | 811 | 8 | 0 | 1 | 811 | 1 | 811 | 0.00E+00 | 1477.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055542.t1 | Q9FIT8 | 57.5 | 774 | 292 | 7 | 1 | 743 | 1 | 768 | 1.5e-237 | 823.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055542.t1 | G7J3A5 | 99.0 | 811 | 8 | 0 | 1 | 811 | 1 | 811 | 0.0e+00 | 1477.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene05414 | MS.gene055542 | 0.803122 | 4.05E-49 | -1.69E-46 |
MS.gene05415 | MS.gene055542 | 0.840238 | 9.81E-58 | -1.69E-46 |
MS.gene055542 | MS.gene05761 | 0.805615 | 1.23E-49 | -1.69E-46 |
MS.gene055542 | MS.gene07536 | 0.800459 | 1.43E-48 | -1.69E-46 |
MS.gene055542 | MS.gene32874 | 0.802189 | 6.31E-49 | -1.69E-46 |
MS.gene055542 | MS.gene38976 | 0.809005 | 2.34E-50 | -1.69E-46 |
MS.gene055542 | MS.gene41646 | 0.848425 | 6.18E-60 | -1.69E-46 |
MS.gene055542 | MS.gene43459 | 0.800862 | 1.18E-48 | -1.69E-46 |
MS.gene055542 | MS.gene44603 | 0.815737 | 7.93E-52 | -1.69E-46 |
MS.gene055542 | MS.gene59282 | 0.819353 | 1.21E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055542.t1 | MTR_3g098680 | 98.767 | 811 | 10 | 0 | 1 | 811 | 1 | 811 | 0.0 | 1663 |
MS.gene055542.t1 | MTR_8g100100 | 66.832 | 805 | 250 | 8 | 1 | 800 | 1 | 793 | 0.0 | 1079 |
MS.gene055542.t1 | MTR_8g100100 | 66.338 | 811 | 250 | 9 | 1 | 800 | 1 | 799 | 0.0 | 1074 |
MS.gene055542.t1 | MTR_7g020860 | 58.937 | 828 | 304 | 9 | 1 | 795 | 1 | 825 | 0.0 | 919 |
MS.gene055542.t1 | MTR_7g020860 | 63.465 | 635 | 223 | 5 | 1 | 628 | 1 | 633 | 0.0 | 778 |
MS.gene055542.t1 | MTR_4g074170 | 45.194 | 801 | 384 | 11 | 2 | 790 | 4 | 761 | 0.0 | 654 |
MS.gene055542.t1 | MTR_2g080950 | 40.580 | 138 | 51 | 3 | 500 | 637 | 19 | 125 | 1.90e-22 | 102 |
MS.gene055542.t1 | MTR_8g464390 | 39.310 | 145 | 55 | 4 | 503 | 645 | 22 | 135 | 4.04e-20 | 94.7 |
MS.gene055542.t1 | MTR_6g080710 | 38.462 | 130 | 51 | 3 | 503 | 632 | 22 | 122 | 1.03e-18 | 87.4 |
MS.gene055542.t1 | MTR_8g038400 | 37.692 | 130 | 56 | 3 | 507 | 635 | 27 | 132 | 2.99e-18 | 87.8 |
MS.gene055542.t1 | MTR_3g017500 | 32.927 | 164 | 83 | 4 | 473 | 635 | 29 | 166 | 1.11e-16 | 83.6 |
MS.gene055542.t1 | MTR_3g017500 | 35.000 | 140 | 66 | 3 | 497 | 635 | 21 | 136 | 1.46e-16 | 82.8 |
MS.gene055542.t1 | MTR_8g088320 | 34.884 | 129 | 59 | 4 | 509 | 636 | 21 | 125 | 2.19e-15 | 78.6 |
MS.gene055542.t1 | MTR_2g030230 | 35.659 | 129 | 58 | 4 | 509 | 636 | 30 | 134 | 2.65e-15 | 78.6 |
MS.gene055542.t1 | MTR_8g067080 | 48.571 | 70 | 34 | 1 | 503 | 572 | 16 | 83 | 1.77e-12 | 70.5 |
MS.gene055542.t1 | MTR_8g067080 | 48.571 | 70 | 34 | 1 | 503 | 572 | 16 | 83 | 1.79e-12 | 70.5 |
MS.gene055542.t1 | MTR_8g471110 | 48.571 | 70 | 34 | 1 | 503 | 572 | 16 | 83 | 1.79e-12 | 70.5 |
MS.gene055542.t1 | MTR_1g069000 | 44.286 | 70 | 37 | 1 | 503 | 572 | 10 | 77 | 6.94e-12 | 68.9 |
MS.gene055542.t1 | MTR_8g067090 | 45.946 | 74 | 35 | 2 | 502 | 572 | 12 | 83 | 8.47e-12 | 68.6 |
MS.gene055542.t1 | MTR_8g471120 | 45.946 | 74 | 35 | 2 | 502 | 572 | 12 | 83 | 8.47e-12 | 68.6 |
MS.gene055542.t1 | MTR_5g022050 | 32.787 | 122 | 77 | 2 | 667 | 784 | 278 | 398 | 1.45e-11 | 67.8 |
MS.gene055542.t1 | MTR_7g099830 | 40.000 | 75 | 43 | 1 | 503 | 577 | 10 | 82 | 8.53e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055542.t1 | AT5G61980 | 57.678 | 827 | 293 | 11 | 1 | 786 | 1 | 811 | 0.0 | 924 |
MS.gene055542.t1 | AT5G13300 | 58.918 | 813 | 298 | 10 | 1 | 786 | 1 | 804 | 0.0 | 908 |
MS.gene055542.t1 | AT1G60860 | 42.500 | 800 | 408 | 11 | 3 | 790 | 4 | 763 | 0.0 | 616 |
MS.gene055542.t1 | AT1G10870 | 42.609 | 805 | 404 | 14 | 3 | 790 | 4 | 767 | 0.0 | 610 |
MS.gene055542.t1 | AT1G10870 | 42.857 | 805 | 397 | 15 | 3 | 790 | 4 | 762 | 0.0 | 609 |
MS.gene055542.t1 | AT1G60860 | 40.896 | 692 | 357 | 11 | 111 | 790 | 1 | 652 | 3.36e-167 | 499 |
MS.gene055542.t1 | AT1G60860 | 39.524 | 630 | 329 | 11 | 173 | 790 | 3 | 592 | 2.29e-139 | 426 |
MS.gene055542.t1 | AT5G54310 | 38.411 | 151 | 62 | 3 | 500 | 650 | 19 | 138 | 3.06e-21 | 98.6 |
MS.gene055542.t1 | AT3G17660 | 37.500 | 136 | 54 | 3 | 500 | 635 | 19 | 123 | 1.02e-19 | 88.2 |
MS.gene055542.t1 | AT3G07940 | 36.905 | 168 | 73 | 6 | 485 | 649 | 37 | 174 | 1.55e-19 | 90.1 |
MS.gene055542.t1 | AT3G17660 | 37.500 | 136 | 54 | 3 | 500 | 635 | 19 | 123 | 2.02e-19 | 88.6 |
MS.gene055542.t1 | AT3G17660 | 37.500 | 136 | 54 | 3 | 500 | 635 | 19 | 123 | 4.05e-19 | 88.2 |
MS.gene055542.t1 | AT4G21160 | 39.416 | 137 | 57 | 6 | 501 | 636 | 20 | 131 | 4.78e-19 | 89.7 |
MS.gene055542.t1 | AT4G21160 | 39.416 | 137 | 57 | 6 | 501 | 636 | 20 | 131 | 4.78e-19 | 89.7 |
MS.gene055542.t1 | AT4G21160 | 39.416 | 137 | 57 | 6 | 501 | 636 | 20 | 131 | 4.78e-19 | 89.7 |
MS.gene055542.t1 | AT4G21160 | 39.416 | 137 | 57 | 6 | 501 | 636 | 20 | 131 | 4.78e-19 | 89.7 |
MS.gene055542.t1 | AT3G07940 | 37.333 | 150 | 69 | 4 | 500 | 649 | 50 | 174 | 6.63e-19 | 90.1 |
MS.gene055542.t1 | AT4G05330 | 37.984 | 129 | 55 | 4 | 509 | 636 | 27 | 131 | 2.06e-17 | 85.1 |
MS.gene055542.t1 | AT4G05330 | 37.984 | 129 | 55 | 4 | 509 | 636 | 27 | 131 | 2.06e-17 | 85.1 |
MS.gene055542.t1 | AT3G17660 | 33.824 | 136 | 49 | 3 | 500 | 635 | 19 | 113 | 9.91e-14 | 71.6 |
MS.gene055542.t1 | AT2G35210 | 50.000 | 70 | 33 | 1 | 503 | 572 | 16 | 83 | 1.02e-12 | 71.2 |
MS.gene055542.t1 | AT2G35210 | 50.000 | 70 | 33 | 1 | 503 | 572 | 16 | 83 | 1.80e-12 | 70.5 |
MS.gene055542.t1 | AT4G17890 | 47.143 | 70 | 35 | 1 | 503 | 572 | 19 | 86 | 9.68e-12 | 68.2 |
MS.gene055542.t1 | AT4G17890 | 47.143 | 70 | 35 | 1 | 503 | 572 | 19 | 86 | 1.23e-11 | 68.2 |
MS.gene055542.t1 | AT3G53710 | 45.312 | 64 | 33 | 1 | 509 | 572 | 16 | 77 | 2.10e-11 | 67.4 |
MS.gene055542.t1 | AT3G53710 | 45.312 | 64 | 33 | 1 | 509 | 572 | 16 | 77 | 2.10e-11 | 67.4 |
MS.gene055542.t1 | AT3G53710 | 45.312 | 64 | 33 | 1 | 509 | 572 | 16 | 77 | 2.10e-11 | 67.4 |
MS.gene055542.t1 | AT5G46750 | 47.143 | 70 | 35 | 1 | 503 | 572 | 16 | 83 | 2.18e-11 | 67.0 |
MS.gene055542.t1 | AT2G37550 | 55.319 | 47 | 21 | 0 | 509 | 555 | 16 | 62 | 5.00e-11 | 66.2 |
MS.gene055542.t1 | AT2G37550 | 55.319 | 47 | 21 | 0 | 509 | 555 | 16 | 62 | 5.00e-11 | 66.2 |
MS.gene055542.t1 | AT5G66055 | 33.607 | 122 | 74 | 2 | 667 | 783 | 279 | 398 | 9.33e-11 | 65.5 |
Find 175 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAACTGCCCTTGAAAATTT+TGG | 0.129587 | 3.2:+82026616 | MS.gene055542:CDS |
TCTCAAAGCAATAGAGAATT+TGG | 0.160154 | 3.2:-82026824 | None:intergenic |
ATAGCACCTGATCATATAAT+TGG | 0.169057 | 3.2:-82027306 | None:intergenic |
ATGCTGAGCAATCAGATTTA+AGG | 0.174387 | 3.2:+82029545 | MS.gene055542:CDS |
TACGAGGATGCCAAGGTTTA+AGG | 0.210514 | 3.2:-82030130 | None:intergenic |
AGTCTTCAGATGATTTATTA+AGG | 0.228790 | 3.2:-82029996 | None:intergenic |
CAGATTTAAGGTTCTGCTTC+AGG | 0.255810 | 3.2:+82029557 | MS.gene055542:CDS |
CTGAGTAGGTTGCTTTCTTC+AGG | 0.256487 | 3.2:+82029445 | MS.gene055542:CDS |
CAAACTGATGACACTCCTTT+TGG | 0.256648 | 3.2:+82035735 | MS.gene055542:CDS |
CATCAAGGATTTCGACATTA+AGG | 0.277481 | 3.2:-82027047 | None:intergenic |
TTTATTAAGGGTGGAGTTCT+TGG | 0.279504 | 3.2:-82029983 | None:intergenic |
ATAGAGAATTTGGCCATTAC+AGG | 0.293566 | 3.2:-82026814 | None:intergenic |
ATCTCTTTGCGAACTCGGTT+TGG | 0.299879 | 3.2:+82035682 | MS.gene055542:CDS |
CTCTCCCATGTTTCGTCAAC+AGG | 0.308427 | 3.2:+82025330 | MS.gene055542:CDS |
TTGTCCTTGAATGGACCTTA+TGG | 0.309281 | 3.2:+82028898 | MS.gene055542:CDS |
TACAAGATTATGATCGATTA+GGG | 0.316434 | 3.2:+82029944 | MS.gene055542:CDS |
AAGGATGCCCAGTCTGGTTC+AGG | 0.318035 | 3.2:-82030111 | None:intergenic |
TTACAAGATTATGATCGATT+AGG | 0.319398 | 3.2:+82029943 | MS.gene055542:CDS |
CTCAAAGATGTATACTTTGC+AGG | 0.340532 | 3.2:+82029591 | MS.gene055542:CDS |
TCTCTTTGCGAACTCGGTTT+GGG | 0.344476 | 3.2:+82035683 | MS.gene055542:CDS |
CGATCATAATCTTGTAAACT+TGG | 0.347293 | 3.2:-82029937 | None:intergenic |
TGGCCGATATCGCCAGGTTC+TGG | 0.349162 | 3.2:-82037024 | None:intergenic |
GTAAATGTAGCTTCAGGGTT+TGG | 0.350696 | 3.2:+82025801 | MS.gene055542:intron |
CTATTTGATATCCTAGAAAA+AGG | 0.351162 | 3.2:-82028949 | None:intergenic |
GATCCTCTATTTGTAACTTT+GGG | 0.353331 | 3.2:+82026652 | MS.gene055542:CDS |
GCACCAGAACCTGGCGATAT+CGG | 0.353384 | 3.2:+82037021 | MS.gene055542:CDS |
CTAGAAATGAAGCATGGATT+TGG | 0.360386 | 3.2:-82037044 | None:intergenic |
TGATCCTCTATTTGTAACTT+TGG | 0.364030 | 3.2:+82026651 | MS.gene055542:CDS |
GAAATAAGATCATCGTGTTC+TGG | 0.367730 | 3.2:-82035870 | None:intergenic |
GATTGGATGGAAAAGATAAA+TGG | 0.371968 | 3.2:+82029725 | MS.gene055542:CDS |
CTTAACTATGTTTCAGTCAC+TGG | 0.372256 | 3.2:+82035656 | MS.gene055542:CDS |
CAAAACGTTCATCAAATTTG+AGG | 0.376722 | 3.2:+82029154 | MS.gene055542:CDS |
TCATTCCAACATCACTTGTT+AGG | 0.382586 | 3.2:-82036505 | None:intergenic |
CATTAAGGATGTTCATTAAC+CGG | 0.382719 | 3.2:-82027032 | None:intergenic |
TGTACTTTCTACATCCTTTG+TGG | 0.388820 | 3.2:-82025864 | None:intergenic |
TCCGGCGTTCACCGTAATCT+TGG | 0.391420 | 3.2:+82030165 | MS.gene055542:CDS |
TTCAAGTAAAGTTCAGCTAA+TGG | 0.395269 | 3.2:+82036442 | MS.gene055542:CDS |
CGAGGAAGCTCGTTTCAATC+TGG | 0.399336 | 3.2:+82028174 | MS.gene055542:CDS |
ATTTATGTACACCAAGATTA+CGG | 0.402412 | 3.2:-82030176 | None:intergenic |
ATCGAGTTTCTCCTACAGTA+TGG | 0.405256 | 3.2:+82036527 | MS.gene055542:CDS |
TAGTGTCTGCACCGACAATA+AGG | 0.410504 | 3.2:-82029759 | None:intergenic |
GTCTTCAGATGATTTATTAA+GGG | 0.412252 | 3.2:-82029995 | None:intergenic |
GTTAGTGGAGAAGCACTATC+TGG | 0.415526 | 3.2:+82036282 | MS.gene055542:CDS |
CTCGTATGCATTGAATGTTC+CGG | 0.420456 | 3.2:+82030147 | MS.gene055542:CDS |
ATTCAGAGAAAGTATTTGTT+CGG | 0.424073 | 3.2:+82036139 | MS.gene055542:CDS |
ATACTTACATTTGTATGTAA+TGG | 0.426003 | 3.2:-82029240 | None:intergenic |
CGATGATCTTATTTCACTAA+AGG | 0.428887 | 3.2:+82035878 | MS.gene055542:CDS |
ACCAATTGATATTCTAAGAA+AGG | 0.432493 | 3.2:+82030053 | MS.gene055542:CDS |
AAAACGTTCATCAAATTTGA+GGG | 0.433013 | 3.2:+82029155 | MS.gene055542:CDS |
TATACATCCGAATGACTTGT+TGG | 0.434689 | 3.2:-82037084 | None:intergenic |
ACCTTTCTTAGAATATCAAT+TGG | 0.437802 | 3.2:-82030054 | None:intergenic |
GACTGGGCATCCTTAAACCT+TGG | 0.439239 | 3.2:+82030120 | MS.gene055542:CDS |
CTTAAGCTTGCACCAGAACC+TGG | 0.441469 | 3.2:+82037012 | MS.gene055542:CDS |
CTCTGCAATACTTACCCAAA+AGG | 0.453749 | 3.2:-82035750 | None:intergenic |
GGTTCTGGTGCAAGCTTAAG+AGG | 0.454545 | 3.2:-82037009 | None:intergenic |
GCTGGAACCTTTCATTATTG+AGG | 0.457973 | 3.2:+82028542 | MS.gene055542:CDS |
AGCTTCCCAATTATATGATC+AGG | 0.458829 | 3.2:+82027300 | MS.gene055542:CDS |
CTGCAAAGTATACATCTTTG+AGG | 0.463088 | 3.2:-82029590 | None:intergenic |
GAAAGTAGGTTGTCCTTGAA+TGG | 0.463161 | 3.2:+82028889 | MS.gene055542:CDS |
TCCAACATCACTTGTTAGGC+AGG | 0.465003 | 3.2:-82036501 | None:intergenic |
AGGTTTAAGGATGCCCAGTC+TGG | 0.465099 | 3.2:-82030117 | None:intergenic |
ATGAATATTCACTTCTCCAC+TGG | 0.465462 | 3.2:-82028926 | None:intergenic |
ATACACTGCTTTCTTGTCGT+TGG | 0.467572 | 3.2:-82036223 | None:intergenic |
GCGGTAAACCTGAACCAGAC+TGG | 0.468140 | 3.2:+82030103 | MS.gene055542:CDS |
GATTTCTCTTTGTGAAAGAA+TGG | 0.469180 | 3.2:+82028840 | MS.gene055542:CDS |
GTAGGGATATCAGCAGTTAC+AGG | 0.469264 | 3.2:+82028518 | MS.gene055542:intron |
CTGCAAAATTGCTTATTACA+AGG | 0.471398 | 3.2:+82036624 | MS.gene055542:CDS |
GAGAACCTGTTGACGAAACA+TGG | 0.472093 | 3.2:-82025335 | None:intergenic |
CACTATATACCTTGACATCA+AGG | 0.472372 | 3.2:-82027062 | None:intergenic |
GGGAAATCTCTTTGCGAACT+CGG | 0.473702 | 3.2:+82035677 | MS.gene055542:CDS |
CATCAAATTTGAGGGCTGAC+TGG | 0.475429 | 3.2:+82029163 | MS.gene055542:CDS |
TTCAGTGGGGCAACAAGTGA+TGG | 0.476100 | 3.2:+82036188 | MS.gene055542:CDS |
TCATCTTCGATACTTTCAAC+AGG | 0.477596 | 3.2:+82028373 | MS.gene055542:CDS |
TGGATTTGGCCGATATCGCC+AGG | 0.484174 | 3.2:-82037030 | None:intergenic |
TTCAGATGATTTATTAAGGG+TGG | 0.491115 | 3.2:-82029992 | None:intergenic |
AGTCATTGCCTCCTTATTGT+CGG | 0.492054 | 3.2:+82029748 | MS.gene055542:CDS |
CCTCCCAAAGTTACAAATAG+AGG | 0.493096 | 3.2:-82026655 | None:intergenic |
TTGCTTTCTTCAGGTTACCC+TGG | 0.494258 | 3.2:+82029454 | MS.gene055542:CDS |
GTGGACATCAATTCTGTTAG+TGG | 0.496499 | 3.2:+82036267 | MS.gene055542:CDS |
CCTTCTTTATCTACAGCAAG+TGG | 0.499693 | 3.2:-82036979 | None:intergenic |
TAGCACCTGATCATATAATT+GGG | 0.502026 | 3.2:-82027305 | None:intergenic |
ATATCAGCAGTTACAGGAGC+TGG | 0.502898 | 3.2:+82028524 | MS.gene055542:CDS |
GACAGCGGCGACATCAAACT+TGG | 0.507431 | 3.2:-82028010 | None:intergenic |
GGGTTCTAGTCTGCTTCACT+TGG | 0.509816 | 3.2:+82036478 | MS.gene055542:CDS |
AAGCAAGTTATCAAGAAAGT+AGG | 0.510880 | 3.2:+82028875 | MS.gene055542:CDS |
TGCAAAGTATACATCTTTGA+GGG | 0.513469 | 3.2:-82029589 | None:intergenic |
ATAATGTAAATGTAGCTTCA+GGG | 0.515640 | 3.2:+82025796 | MS.gene055542:intron |
CCTCTATTTGTAACTTTGGG+AGG | 0.517020 | 3.2:+82026655 | MS.gene055542:CDS |
GGGCTTGGAGAGGCATATGA+TGG | 0.521668 | 3.2:+82026580 | MS.gene055542:CDS |
CCACTTGCTGTAGATAAAGA+AGG | 0.523554 | 3.2:+82036979 | MS.gene055542:CDS |
TGGTAATGAGTCGATAATGC+TGG | 0.524929 | 3.2:-82029917 | None:intergenic |
AGTCACCATCTTCTTTCAGT+GGG | 0.526183 | 3.2:+82036174 | MS.gene055542:CDS |
CTTTGCGAACTCGGTTTGGG+AGG | 0.526694 | 3.2:+82035686 | MS.gene055542:CDS |
TCTCCACTGGGAGAACCATA+AGG | 0.526885 | 3.2:-82028913 | None:intergenic |
TTACAAATAGAGGATCACTA+TGG | 0.527310 | 3.2:-82026645 | None:intergenic |
AGACTTACAGAAGAATAAGC+AGG | 0.527857 | 3.2:+82030014 | MS.gene055542:CDS |
TTCATTTCTAGAGAAAATTG+AGG | 0.528275 | 3.2:+82037056 | MS.gene055542:CDS |
ATGCGCTTGACCAGATGGAT+TGG | 0.529420 | 3.2:+82029708 | MS.gene055542:CDS |
CAAGGAACTTCTTCGGTCAC+AGG | 0.530219 | 3.2:+82026861 | MS.gene055542:CDS |
GGTATGAGCAGGACCTGTAA+TGG | 0.530587 | 3.2:+82026801 | MS.gene055542:intron |
CCTTCTCACATCAACAATCA+AGG | 0.531142 | 3.2:+82029519 | MS.gene055542:CDS |
TTATTGTCGGTGCAGACACT+AGG | 0.531861 | 3.2:+82029761 | MS.gene055542:CDS |
ATTATGATCGATTAGGGAGT+GGG | 0.533207 | 3.2:+82029950 | MS.gene055542:CDS |
GTACACACAAGGAACTTCTT+CGG | 0.535976 | 3.2:+82026854 | MS.gene055542:CDS |
GTATCGGCACATTGTCAAAT+CGG | 0.536294 | 3.2:+82036242 | MS.gene055542:CDS |
CGGTAAACCTGAACCAGACT+GGG | 0.536366 | 3.2:+82030104 | MS.gene055542:CDS |
TTCTCAGCTGACTCAGAAAG+TGG | 0.536433 | 3.2:+82029880 | MS.gene055542:CDS |
GCCTGCCTAACAAGTGATGT+TGG | 0.537349 | 3.2:+82036500 | MS.gene055542:CDS |
GGACCAACCAACAAGTCATT+CGG | 0.539337 | 3.2:+82037077 | MS.gene055542:CDS |
GGAGGCTGTCACTGGAGTCA+TGG | 0.541060 | 3.2:+82028346 | MS.gene055542:CDS |
CCTTGATTGTTGATGTGAGA+AGG | 0.542858 | 3.2:-82029519 | None:intergenic |
CATCCGAATGACTTGTTGGT+TGG | 0.543140 | 3.2:-82037080 | None:intergenic |
AATCACTACGCTCAAGATGT+TGG | 0.548317 | 3.2:+82025836 | MS.gene055542:CDS |
AGTGATGCTTGCAGGAAGCT+CGG | 0.549421 | 3.2:+82027263 | MS.gene055542:intron |
TTCGTAACCTCAATAATGAA+AGG | 0.551600 | 3.2:-82028549 | None:intergenic |
TCAGGGTTTGGAAGAAAATG+TGG | 0.553678 | 3.2:+82025813 | MS.gene055542:CDS |
TGTCGAAATCCTTGATGTCA+AGG | 0.554806 | 3.2:+82027053 | MS.gene055542:CDS |
TGGTGCTCTTCATAATATTG+AGG | 0.554919 | 3.2:+82028301 | MS.gene055542:CDS |
TGCATTACTGCATTATGAGA+GGG | 0.555369 | 3.2:+82036591 | MS.gene055542:CDS |
TTAACTATGTTTCAGTCACT+GGG | 0.558129 | 3.2:+82035657 | MS.gene055542:CDS |
TGAGGGCTGACTGGAAGAGA+AGG | 0.560438 | 3.2:+82029172 | MS.gene055542:CDS |
ATGCTATTGATTCAAGAGGT+AGG | 0.560612 | 3.2:+82036561 | MS.gene055542:CDS |
GGAAAGATTCATTCATGCAA+AGG | 0.563440 | 3.2:+82035899 | MS.gene055542:CDS |
GATTATGATCGATTAGGGAG+TGG | 0.565182 | 3.2:+82029949 | MS.gene055542:CDS |
AGAAAATGCGCTTGACCAGA+TGG | 0.565952 | 3.2:+82029703 | MS.gene055542:CDS |
GCTAATGGAGGACATACAAG+AGG | 0.566617 | 3.2:+82036457 | MS.gene055542:CDS |
TGAATATTCACTTCTCCACT+GGG | 0.569283 | 3.2:-82028925 | None:intergenic |
GTAGGTTCGAGTCATTCGAC+AGG | 0.570851 | 3.2:+82029122 | MS.gene055542:intron |
AGAACCATAAGGTCCATTCA+AGG | 0.570921 | 3.2:-82028902 | None:intergenic |
TTATGATCGATTAGGGAGTG+GGG | 0.573933 | 3.2:+82029951 | MS.gene055542:CDS |
AAGTCACCATCTTCTTTCAG+TGG | 0.573987 | 3.2:+82036173 | MS.gene055542:CDS |
CTCATAATGCAGTAATGCAA+TGG | 0.576999 | 3.2:-82036587 | None:intergenic |
CTAAATGCTATTGATTCAAG+AGG | 0.577663 | 3.2:+82036557 | MS.gene055542:CDS |
TTGCATTACTGCATTATGAG+AGG | 0.583572 | 3.2:+82036590 | MS.gene055542:CDS |
TGTGCCAATGAAAACAGTGC+AGG | 0.585960 | 3.2:+82029418 | MS.gene055542:CDS |
CAATGCAAGAACAATATTCG+AGG | 0.588985 | 3.2:+82028156 | MS.gene055542:CDS |
TTAGATCTGCTCCATACTGT+AGG | 0.591385 | 3.2:-82036538 | None:intergenic |
GTAGCTGAATCAGCTGCAAG+TGG | 0.591590 | 3.2:+82028985 | MS.gene055542:CDS |
CAATGCATACGAGGATGCCA+AGG | 0.597403 | 3.2:-82030137 | None:intergenic |
TGAATCAGCTGCAAGTGGAA+AGG | 0.599355 | 3.2:+82028990 | MS.gene055542:CDS |
GATATTCTAAGAAAGGTTAG+CGG | 0.601944 | 3.2:+82030060 | MS.gene055542:CDS |
CAGAGAAAGTATTTGTTCGG+CGG | 0.604077 | 3.2:+82036142 | MS.gene055542:CDS |
ACGACAAGAAAGCAGTGTAT+CGG | 0.605379 | 3.2:+82036226 | MS.gene055542:CDS |
TTCTAGGATATCAAATAGTG+TGG | 0.611590 | 3.2:+82028954 | MS.gene055542:CDS |
TGGAGCATATGCTAAATGAC+CGG | 0.614503 | 3.2:+82027013 | MS.gene055542:CDS |
ACAGTGCAGGCATTCTGAGT+AGG | 0.614734 | 3.2:+82029431 | MS.gene055542:CDS |
GCACATTGTCAAATCGGACG+TGG | 0.616091 | 3.2:+82036248 | MS.gene055542:CDS |
TGTCGCCGCTGTCATAGAAG+AGG | 0.627321 | 3.2:+82028020 | MS.gene055542:CDS |
TGACTGAAACATAGTTAAGA+CGG | 0.630730 | 3.2:-82035652 | None:intergenic |
AATGACAAATGTGCAGATTG+CGG | 0.632530 | 3.2:+82030084 | MS.gene055542:CDS |
AGCAAGAGAAAGTTACAATG+AGG | 0.632689 | 3.2:+82028813 | MS.gene055542:CDS |
GACTTACAGAAGAATAAGCA+GGG | 0.633668 | 3.2:+82030015 | MS.gene055542:CDS |
TTTCATCAGGAACAACTCCA+GGG | 0.634652 | 3.2:-82029471 | None:intergenic |
TTGTCGGTGCAGACACTAGG+TGG | 0.635324 | 3.2:+82029764 | MS.gene055542:CDS |
GGTGCAGACACTAGGTGGAA+AGG | 0.635633 | 3.2:+82029769 | MS.gene055542:CDS |
ACCAAGATTACGGTGAACGC+CGG | 0.643800 | 3.2:-82030166 | None:intergenic |
AGAACCTGTTGACGAAACAT+GGG | 0.644015 | 3.2:-82025334 | None:intergenic |
GTTGCCCCACTGAAAGAAGA+TGG | 0.647235 | 3.2:-82036179 | None:intergenic |
GGACCTTATGGTTCTCCCAG+TGG | 0.649871 | 3.2:+82028910 | MS.gene055542:CDS |
ACGTACCTCTTCTATGACAG+CGG | 0.656311 | 3.2:-82028025 | None:intergenic |
GCTTGACCAGATGGATTGGA+TGG | 0.656746 | 3.2:+82029712 | MS.gene055542:CDS |
AAGTAAAGTTCAGCTAATGG+AGG | 0.657735 | 3.2:+82036445 | MS.gene055542:CDS |
GAAACTTGATGTCAAAGTGT+GGG | 0.658753 | 3.2:+82035623 | MS.gene055542:CDS |
TGAAACTTGATGTCAAAGTG+TGG | 0.667816 | 3.2:+82035622 | MS.gene055542:CDS |
GAGAGAAATCAGTACACACA+AGG | 0.679960 | 3.2:+82026843 | MS.gene055542:CDS |
ATGTGAGAAGGTTCACTGTG+TGG | 0.680486 | 3.2:-82029507 | None:intergenic |
TGTCTGCACCGACAATAAGG+AGG | 0.686927 | 3.2:-82029756 | None:intergenic |
GTCACCATCTTCTTTCAGTG+GGG | 0.689158 | 3.2:+82036175 | MS.gene055542:CDS |
AGATGTTGGAAGTTCCACAA+AGG | 0.694781 | 3.2:+82025850 | MS.gene055542:CDS |
CGGAACATTCAATGCATACG+AGG | 0.700636 | 3.2:-82030146 | None:intergenic |
CTAATGGAGGACATACAAGA+GGG | 0.703354 | 3.2:+82036458 | MS.gene055542:CDS |
TAGGTTCGAGTCATTCGACA+GGG | 0.712968 | 3.2:+82029123 | MS.gene055542:intron |
GATGCTTGCAGGAAGCTCGG+AGG | 0.714831 | 3.2:+82027266 | MS.gene055542:intron |
CTGAAACATAGTTAAGACGG+AGG | 0.715350 | 3.2:-82035649 | None:intergenic |
TCAATCAGCTATATTCACAG+CGG | 0.758559 | 3.2:+82029392 | MS.gene055542:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 82025307 | 82037107 | 82025307 | ID=MS.gene055542 |
chr3.2 | mRNA | 82025307 | 82037107 | 82025307 | ID=MS.gene055542.t1;Parent=MS.gene055542 |
chr3.2 | exon | 82025307 | 82025351 | 82025307 | ID=MS.gene055542.t1.exon1;Parent=MS.gene055542.t1 |
chr3.2 | CDS | 82025307 | 82025351 | 82025307 | ID=cds.MS.gene055542.t1;Parent=MS.gene055542.t1 |
chr3.2 | exon | 82025811 | 82025887 | 82025811 | ID=MS.gene055542.t1.exon2;Parent=MS.gene055542.t1 |
chr3.2 | CDS | 82025811 | 82025887 | 82025811 | ID=cds.MS.gene055542.t1;Parent=MS.gene055542.t1 |
chr3.2 | exon | 82026576 | 82026676 | 82026576 | ID=MS.gene055542.t1.exon3;Parent=MS.gene055542.t1 |
chr3.2 | CDS | 82026576 | 82026676 | 82026576 | ID=cds.MS.gene055542.t1;Parent=MS.gene055542.t1 |
chr3.2 | exon | 82026812 | 82026882 | 82026812 | ID=MS.gene055542.t1.exon4;Parent=MS.gene055542.t1 |
chr3.2 | CDS | 82026812 | 82026882 | 82026812 | ID=cds.MS.gene055542.t1;Parent=MS.gene055542.t1 |
chr3.2 | exon | 82027012 | 82027074 | 82027012 | ID=MS.gene055542.t1.exon5;Parent=MS.gene055542.t1 |
chr3.2 | CDS | 82027012 | 82027074 | 82027012 | ID=cds.MS.gene055542.t1;Parent=MS.gene055542.t1 |
chr3.2 | exon | 82027277 | 82027321 | 82027277 | ID=MS.gene055542.t1.exon6;Parent=MS.gene055542.t1 |
chr3.2 | CDS | 82027277 | 82027321 | 82027277 | ID=cds.MS.gene055542.t1;Parent=MS.gene055542.t1 |
chr3.2 | exon | 82027976 | 82028041 | 82027976 | ID=MS.gene055542.t1.exon7;Parent=MS.gene055542.t1 |
chr3.2 | CDS | 82027976 | 82028041 | 82027976 | ID=cds.MS.gene055542.t1;Parent=MS.gene055542.t1 |
chr3.2 | exon | 82028148 | 82028195 | 82028148 | ID=MS.gene055542.t1.exon8;Parent=MS.gene055542.t1 |
chr3.2 | CDS | 82028148 | 82028195 | 82028148 | ID=cds.MS.gene055542.t1;Parent=MS.gene055542.t1 |
chr3.2 | exon | 82028299 | 82028394 | 82028299 | ID=MS.gene055542.t1.exon9;Parent=MS.gene055542.t1 |
chr3.2 | CDS | 82028299 | 82028394 | 82028299 | ID=cds.MS.gene055542.t1;Parent=MS.gene055542.t1 |
chr3.2 | exon | 82028522 | 82028563 | 82028522 | ID=MS.gene055542.t1.exon10;Parent=MS.gene055542.t1 |
chr3.2 | CDS | 82028522 | 82028563 | 82028522 | ID=cds.MS.gene055542.t1;Parent=MS.gene055542.t1 |
chr3.2 | exon | 82028793 | 82029011 | 82028793 | ID=MS.gene055542.t1.exon11;Parent=MS.gene055542.t1 |
chr3.2 | CDS | 82028793 | 82029011 | 82028793 | ID=cds.MS.gene055542.t1;Parent=MS.gene055542.t1 |
chr3.2 | exon | 82029126 | 82029254 | 82029126 | ID=MS.gene055542.t1.exon12;Parent=MS.gene055542.t1 |
chr3.2 | CDS | 82029126 | 82029254 | 82029126 | ID=cds.MS.gene055542.t1;Parent=MS.gene055542.t1 |
chr3.2 | exon | 82029388 | 82029612 | 82029388 | ID=MS.gene055542.t1.exon13;Parent=MS.gene055542.t1 |
chr3.2 | CDS | 82029388 | 82029612 | 82029388 | ID=cds.MS.gene055542.t1;Parent=MS.gene055542.t1 |
chr3.2 | exon | 82029701 | 82029790 | 82029701 | ID=MS.gene055542.t1.exon14;Parent=MS.gene055542.t1 |
chr3.2 | CDS | 82029701 | 82029790 | 82029701 | ID=cds.MS.gene055542.t1;Parent=MS.gene055542.t1 |
chr3.2 | exon | 82029877 | 82030203 | 82029877 | ID=MS.gene055542.t1.exon15;Parent=MS.gene055542.t1 |
chr3.2 | CDS | 82029877 | 82030203 | 82029877 | ID=cds.MS.gene055542.t1;Parent=MS.gene055542.t1 |
chr3.2 | exon | 82035612 | 82035757 | 82035612 | ID=MS.gene055542.t1.exon16;Parent=MS.gene055542.t1 |
chr3.2 | CDS | 82035612 | 82035757 | 82035612 | ID=cds.MS.gene055542.t1;Parent=MS.gene055542.t1 |
chr3.2 | exon | 82035827 | 82035920 | 82035827 | ID=MS.gene055542.t1.exon17;Parent=MS.gene055542.t1 |
chr3.2 | CDS | 82035827 | 82035920 | 82035827 | ID=cds.MS.gene055542.t1;Parent=MS.gene055542.t1 |
chr3.2 | exon | 82036138 | 82036303 | 82036138 | ID=MS.gene055542.t1.exon18;Parent=MS.gene055542.t1 |
chr3.2 | CDS | 82036138 | 82036303 | 82036138 | ID=cds.MS.gene055542.t1;Parent=MS.gene055542.t1 |
chr3.2 | exon | 82036399 | 82036645 | 82036399 | ID=MS.gene055542.t1.exon19;Parent=MS.gene055542.t1 |
chr3.2 | CDS | 82036399 | 82036645 | 82036399 | ID=cds.MS.gene055542.t1;Parent=MS.gene055542.t1 |
chr3.2 | exon | 82036969 | 82037107 | 82036969 | ID=MS.gene055542.t1.exon20;Parent=MS.gene055542.t1 |
chr3.2 | CDS | 82036969 | 82037107 | 82036969 | ID=cds.MS.gene055542.t1;Parent=MS.gene055542.t1 |
Gene Sequence |
Protein sequence |