Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41712.t1 | XP_003624611.1 | 95.2 | 269 | 5 | 2 | 1 | 269 | 1 | 261 | 1.10E-138 | 502.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41712.t1 | O82632 | 42.8 | 222 | 81 | 6 | 45 | 260 | 80 | 261 | 2.2e-31 | 137.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41712.t1 | A2Q5Q2 | 95.2 | 269 | 5 | 2 | 1 | 269 | 1 | 261 | 7.8e-139 | 502.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene41712.t1 | TF | C2C2-GATA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene06093 | MS.gene41712 | 0.804975 | 1.67E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41712.t1 | MTR_7g085410 | 95.167 | 269 | 5 | 2 | 1 | 269 | 1 | 261 | 0.0 | 513 |
MS.gene41712.t1 | MTR_6g032830 | 61.372 | 277 | 77 | 10 | 1 | 264 | 1 | 260 | 1.91e-103 | 301 |
MS.gene41712.t1 | MTR_3g109760 | 39.200 | 250 | 95 | 9 | 15 | 260 | 75 | 271 | 2.52e-35 | 129 |
MS.gene41712.t1 | MTR_1g094930 | 43.787 | 169 | 87 | 5 | 95 | 260 | 48 | 211 | 1.38e-34 | 125 |
MS.gene41712.t1 | MTR_1g094930 | 76.471 | 68 | 16 | 0 | 193 | 260 | 239 | 306 | 7.56e-34 | 125 |
MS.gene41712.t1 | MTR_8g013950 | 37.555 | 229 | 77 | 7 | 45 | 260 | 115 | 290 | 2.32e-33 | 124 |
MS.gene41712.t1 | MTR_4g071590 | 80.000 | 65 | 13 | 0 | 196 | 260 | 211 | 275 | 4.21e-33 | 122 |
MS.gene41712.t1 | MTR_4g471590 | 80.000 | 65 | 13 | 0 | 196 | 260 | 211 | 275 | 4.21e-33 | 122 |
MS.gene41712.t1 | MTR_2g094600 | 61.702 | 94 | 35 | 1 | 172 | 264 | 191 | 284 | 4.47e-33 | 123 |
MS.gene41712.t1 | MTR_1g006650 | 36.364 | 264 | 113 | 9 | 11 | 260 | 76 | 298 | 8.75e-33 | 123 |
MS.gene41712.t1 | MTR_8g076340 | 81.538 | 65 | 12 | 0 | 196 | 260 | 218 | 282 | 2.35e-32 | 120 |
MS.gene41712.t1 | MTR_1g046680 | 74.648 | 71 | 18 | 0 | 190 | 260 | 166 | 236 | 8.74e-32 | 118 |
MS.gene41712.t1 | MTR_1g116010 | 75.758 | 66 | 16 | 0 | 196 | 261 | 164 | 229 | 1.37e-31 | 117 |
MS.gene41712.t1 | MTR_5g021340 | 41.048 | 229 | 95 | 8 | 45 | 260 | 163 | 364 | 1.39e-31 | 120 |
MS.gene41712.t1 | MTR_3g117380 | 76.923 | 65 | 15 | 0 | 196 | 260 | 229 | 293 | 4.92e-31 | 117 |
MS.gene41712.t1 | MTR_4g058910 | 71.831 | 71 | 20 | 0 | 193 | 263 | 311 | 381 | 3.50e-30 | 117 |
MS.gene41712.t1 | MTR_5g007600 | 73.846 | 65 | 17 | 0 | 196 | 260 | 259 | 323 | 2.72e-29 | 113 |
MS.gene41712.t1 | MTR_5g007600 | 71.875 | 64 | 18 | 0 | 196 | 259 | 157 | 220 | 1.25e-27 | 108 |
MS.gene41712.t1 | MTR_7g446110 | 58.065 | 62 | 26 | 0 | 196 | 257 | 187 | 248 | 7.10e-20 | 86.7 |
MS.gene41712.t1 | MTR_7g445950 | 56.923 | 65 | 28 | 0 | 193 | 257 | 117 | 181 | 1.42e-19 | 84.0 |
MS.gene41712.t1 | MTR_7g446070 | 40.000 | 105 | 63 | 0 | 153 | 257 | 89 | 193 | 4.03e-19 | 83.2 |
MS.gene41712.t1 | MTR_7g445980 | 57.143 | 63 | 26 | 1 | 196 | 257 | 33 | 95 | 9.88e-18 | 76.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41712.t1 | AT4G32890 | 42.793 | 222 | 81 | 6 | 45 | 260 | 80 | 261 | 2.04e-43 | 150 |
MS.gene41712.t1 | AT2G45050 | 39.167 | 240 | 93 | 8 | 21 | 260 | 57 | 243 | 4.33e-39 | 137 |
MS.gene41712.t1 | AT5G25830 | 38.655 | 238 | 88 | 8 | 45 | 260 | 82 | 283 | 2.75e-36 | 132 |
MS.gene41712.t1 | AT3G60530 | 39.631 | 217 | 59 | 8 | 45 | 260 | 77 | 222 | 1.17e-35 | 128 |
MS.gene41712.t1 | AT5G66320 | 40.891 | 247 | 109 | 9 | 28 | 260 | 90 | 313 | 2.28e-35 | 129 |
MS.gene41712.t1 | AT5G66320 | 40.891 | 247 | 109 | 9 | 28 | 260 | 90 | 313 | 2.28e-35 | 129 |
MS.gene41712.t1 | AT3G24050 | 75.000 | 68 | 17 | 0 | 193 | 260 | 191 | 258 | 4.85e-33 | 122 |
MS.gene41712.t1 | AT4G36240 | 37.838 | 222 | 75 | 6 | 45 | 265 | 74 | 233 | 1.32e-32 | 120 |
MS.gene41712.t1 | AT3G51080 | 81.538 | 65 | 12 | 0 | 196 | 260 | 221 | 285 | 5.10e-32 | 120 |
MS.gene41712.t1 | AT1G08010 | 72.308 | 65 | 18 | 0 | 196 | 260 | 220 | 284 | 4.57e-31 | 117 |
MS.gene41712.t1 | AT1G08010 | 72.308 | 65 | 18 | 0 | 196 | 260 | 220 | 284 | 4.57e-31 | 117 |
MS.gene41712.t1 | AT1G08010 | 72.308 | 65 | 18 | 0 | 196 | 260 | 220 | 284 | 4.57e-31 | 117 |
MS.gene41712.t1 | AT1G08000 | 73.846 | 65 | 17 | 0 | 196 | 260 | 218 | 282 | 8.87e-30 | 114 |
MS.gene41712.t1 | AT1G08000 | 73.846 | 65 | 17 | 0 | 196 | 260 | 218 | 282 | 8.87e-30 | 114 |
MS.gene41712.t1 | AT4G34680 | 72.308 | 65 | 18 | 0 | 196 | 260 | 180 | 244 | 9.99e-30 | 113 |
MS.gene41712.t1 | AT4G34680 | 72.308 | 65 | 18 | 0 | 196 | 260 | 180 | 244 | 9.99e-30 | 113 |
MS.gene41712.t1 | AT2G28340 | 67.188 | 64 | 21 | 0 | 198 | 261 | 193 | 256 | 2.72e-26 | 104 |
MS.gene41712.t1 | AT3G45170 | 54.878 | 82 | 37 | 0 | 185 | 266 | 104 | 185 | 3.15e-26 | 102 |
Find 54 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCTCTTAAAACAAGCTTAT+TGG | 0.124697 | 7.2:+22310637 | MS.gene41712:CDS |
CACTAGAAACTTGTACATTT+TGG | 0.144962 | 7.2:-22309912 | None:intergenic |
CATGCATTGCATAGTGTCTT+TGG | 0.243410 | 7.2:-22310870 | None:intergenic |
TGAAAAGGAAATTGTGAAAA+AGG | 0.260278 | 7.2:+22310725 | MS.gene41712:CDS |
CATAGTGTCTTTGGGCCTAA+TGG | 0.278012 | 7.2:-22310861 | None:intergenic |
ACACTACTCACTAGGATTAA+TGG | 0.294145 | 7.2:-22311021 | None:intergenic |
ATGGGCCTGCCCTCCATTGT+GGG | 0.318681 | 7.2:-22310842 | None:intergenic |
CAATGGAGGGCAGGCCCATT+AGG | 0.322478 | 7.2:+22310846 | MS.gene41712:CDS |
GTGTTGGATAAGATGCTTAA+AGG | 0.325601 | 7.2:-22310576 | None:intergenic |
AAGATGCTTAAAGGGTCTTT+TGG | 0.328925 | 7.2:-22310567 | None:intergenic |
GGTTTCTTCACTGTGTTTGA+AGG | 0.329936 | 7.2:-22310462 | None:intergenic |
ATAGTGTCTTTGGGCCTAAT+GGG | 0.339035 | 7.2:-22310860 | None:intergenic |
GTACACCTCCTTGTTGGAAT+TGG | 0.356244 | 7.2:-22310798 | None:intergenic |
ATGCATTGCATAGTGTCTTT+GGG | 0.368727 | 7.2:-22310869 | None:intergenic |
AATGGGCCTGCCCTCCATTG+TGG | 0.406749 | 7.2:-22310843 | None:intergenic |
CAATGTGTACACCTCCTTGT+TGG | 0.437336 | 7.2:-22310804 | None:intergenic |
TGTTGGATAAGATGCTTAAA+GGG | 0.444585 | 7.2:-22310575 | None:intergenic |
AAATTCACACAAGAAAGTTA+TGG | 0.446713 | 7.2:+22310974 | MS.gene41712:CDS |
GCTTTGCCTGGAACTGCAAA+AGG | 0.456279 | 7.2:-22310507 | None:intergenic |
GTAAAACTACACAACTTTGT+GGG | 0.468662 | 7.2:-22310398 | None:intergenic |
ACTCACAAAAGTTGGACTCT+TGG | 0.473266 | 7.2:-22310940 | None:intergenic |
AGATTATGAAGTGGTTGAAA+AGG | 0.475929 | 7.2:+22310710 | MS.gene41712:CDS |
TAGTGAACTCATGGTACCTA+AGG | 0.486078 | 7.2:+22310668 | MS.gene41712:CDS |
CAGGCAAAGCAAGAAGCAAA+AGG | 0.500793 | 7.2:+22310520 | MS.gene41712:CDS |
GGTAAAACTACACAACTTTG+TGG | 0.510522 | 7.2:-22310399 | None:intergenic |
AGGACCCCACAATGGAGGGC+AGG | 0.512119 | 7.2:+22310837 | MS.gene41712:CDS |
ATTATGTAGGAAGTGGATGT+TGG | 0.517271 | 7.2:+22310333 | MS.gene41712:intron |
ACAAAAGTTGGACTCTTGGC+AGG | 0.529711 | 7.2:-22310936 | None:intergenic |
TTGAAAGGTTAGAGCAAGAA+GGG | 0.531774 | 7.2:-22309960 | None:intergenic |
CTTGAAAGGTTAGAGCAAGA+AGG | 0.532182 | 7.2:-22309961 | None:intergenic |
TAGTGAGTGCAAACAAGAGA+AGG | 0.541293 | 7.2:+22309930 | MS.gene41712:CDS |
GTTAGCTGATAGTGAACTCA+TGG | 0.566356 | 7.2:+22310659 | MS.gene41712:CDS |
TGGGCCTGCCCTCCATTGTG+GGG | 0.567754 | 7.2:-22310841 | None:intergenic |
GGTCATCAAGGCTACTTGAA+AGG | 0.569542 | 7.2:-22309975 | None:intergenic |
GAGCAGAAAAGAGGTCATCA+AGG | 0.570986 | 7.2:-22309987 | None:intergenic |
TGTGGTGTGAGGTACAAATC+TGG | 0.576464 | 7.2:+22310891 | MS.gene41712:CDS |
GTAGGAAGTGGATGTTGGAA+TGG | 0.583317 | 7.2:+22310338 | MS.gene41712:intron |
TTTGAGGTTGATGTTAACAA+TGG | 0.593552 | 7.2:+22310768 | MS.gene41712:CDS |
ACAAAGGACCCCACAATGGA+GGG | 0.595325 | 7.2:+22310833 | MS.gene41712:CDS |
CACAAAGGACCCCACAATGG+AGG | 0.605327 | 7.2:+22310832 | MS.gene41712:CDS |
ACAAGAAAGTTATGGAGATG+AGG | 0.611218 | 7.2:+22310982 | MS.gene41712:CDS |
GGTAACAAAAGATTATGAAG+TGG | 0.619135 | 7.2:+22310701 | MS.gene41712:CDS |
CTCTTGGCAGGTCTATACTC+AGG | 0.620148 | 7.2:-22310924 | None:intergenic |
AGTGAACTCATGGTACCTAA+GGG | 0.625585 | 7.2:+22310669 | MS.gene41712:CDS |
AACCACTAACACTACTCACT+AGG | 0.631055 | 7.2:-22311029 | None:intergenic |
AAGTGGATGTTGGAATGGAA+TGG | 0.634243 | 7.2:+22310343 | MS.gene41712:CDS |
GTCAAAATCCAATTCCAACA+AGG | 0.638845 | 7.2:+22310790 | MS.gene41712:CDS |
GTACACATTGTTTGTCACAA+AGG | 0.655851 | 7.2:+22310817 | MS.gene41712:CDS |
AAACACAGTGAAGAAACCAA+AGG | 0.660234 | 7.2:+22310467 | MS.gene41712:CDS |
GTGTGAGGTACAAATCTGGT+AGG | 0.664094 | 7.2:+22310895 | MS.gene41712:CDS |
TGTCACAAAGGACCCCACAA+TGG | 0.681006 | 7.2:+22310829 | MS.gene41712:CDS |
AAAATCCAATTCCAACAAGG+AGG | 0.704851 | 7.2:+22310793 | MS.gene41712:CDS |
TATGCAATGCATGTGGTGTG+AGG | 0.734829 | 7.2:+22310880 | MS.gene41712:CDS |
AAGACACTATGCAATGCATG+TGG | 0.751831 | 7.2:+22310873 | MS.gene41712:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTAGAAACATAATATTAA+AGG | - | chr7.2:22310231-22310250 | None:intergenic | 10.0% |
!!! | TATTATGTTTCTAATTTTCT+TGG | + | chr7.2:22310235-22310254 | MS.gene41712:intron | 15.0% |
!!! | TGTAGTTTTTGCTAAAATTA+TGG | + | chr7.2:22310279-22310298 | MS.gene41712:intron | 20.0% |
! | AAATTCACACAAGAAAGTTA+TGG | + | chr7.2:22310974-22310993 | MS.gene41712:CDS | 25.0% |
! | GAAAAACATATGTTAGAACA+AGG | - | chr7.2:22310142-22310161 | None:intergenic | 25.0% |
! | TGAAAAGGAAATTGTGAAAA+AGG | + | chr7.2:22310725-22310744 | MS.gene41712:CDS | 25.0% |
!! | TTTTGACCAAACAATTATGT+AGG | + | chr7.2:22310320-22310339 | MS.gene41712:intron | 25.0% |
AGATTATGAAGTGGTTGAAA+AGG | + | chr7.2:22310710-22310729 | MS.gene41712:CDS | 30.0% | |
AGGAAATTGTGAAAAAGGAA+AGG | + | chr7.2:22310730-22310749 | MS.gene41712:CDS | 30.0% | |
CTCTCTTAAAACAAGCTTAT+TGG | + | chr7.2:22310637-22310656 | MS.gene41712:CDS | 30.0% | |
GGTAACAAAAGATTATGAAG+TGG | + | chr7.2:22310701-22310720 | MS.gene41712:CDS | 30.0% | |
GTAAAACTACACAACTTTGT+GGG | - | chr7.2:22310401-22310420 | None:intergenic | 30.0% | |
TGCAAAAAACTCACAAAAGT+TGG | - | chr7.2:22310951-22310970 | None:intergenic | 30.0% | |
TGTTGGATAAGATGCTTAAA+GGG | - | chr7.2:22310578-22310597 | None:intergenic | 30.0% | |
! | AACATAGTGACTCATTTTGA+GGG | - | chr7.2:22310608-22310627 | None:intergenic | 30.0% |
! | CACTAGAAACTTGTACATTT+TGG | - | chr7.2:22309915-22309934 | None:intergenic | 30.0% |
!! | AAAGGAAAGGTTTGATTTTG+AGG | + | chr7.2:22310743-22310762 | MS.gene41712:CDS | 30.0% |
!! | AAGGAAAGGTTTGATTTTGA+GGG | + | chr7.2:22310744-22310763 | MS.gene41712:CDS | 30.0% |
!! | GTTGTGTTTTGAACATTAGA+GGG | - | chr7.2:22310423-22310442 | None:intergenic | 30.0% |
!! | TGTTGTGTTTTGAACATTAG+AGG | - | chr7.2:22310424-22310443 | None:intergenic | 30.0% |
!! | TTTGAGGTTGATGTTAACAA+TGG | + | chr7.2:22310768-22310787 | MS.gene41712:CDS | 30.0% |
!!! | CAATAAGCTTGTTTTAAGAG+AGG | - | chr7.2:22310639-22310658 | None:intergenic | 30.0% |
AAAATCCAATTCCAACAAGG+AGG | + | chr7.2:22310793-22310812 | MS.gene41712:CDS | 35.0% | |
AAACACAGTGAAGAAACCAA+AGG | + | chr7.2:22310467-22310486 | MS.gene41712:CDS | 35.0% | |
ACAAGAAAGTTATGGAGATG+AGG | + | chr7.2:22310982-22311001 | MS.gene41712:CDS | 35.0% | |
ATGCATTGCATAGTGTCTTT+GGG | - | chr7.2:22310872-22310891 | None:intergenic | 35.0% | |
ATTATGTAGGAAGTGGATGT+TGG | + | chr7.2:22310333-22310352 | MS.gene41712:intron | 35.0% | |
CATAACTAGGAAGGACTTAT+AGG | - | chr7.2:22310118-22310137 | None:intergenic | 35.0% | |
CCAAACAATTATGTAGGAAG+TGG | + | chr7.2:22310326-22310345 | MS.gene41712:intron | 35.0% | |
CCACTTCCTACATAATTGTT+TGG | - | chr7.2:22310329-22310348 | None:intergenic | 35.0% | |
GGTAAAACTACACAACTTTG+TGG | - | chr7.2:22310402-22310421 | None:intergenic | 35.0% | |
GTACACATTGTTTGTCACAA+AGG | + | chr7.2:22310817-22310836 | MS.gene41712:CDS | 35.0% | |
GTCAAAATCCAATTCCAACA+AGG | + | chr7.2:22310790-22310809 | MS.gene41712:CDS | 35.0% | |
GTGTTGGATAAGATGCTTAA+AGG | - | chr7.2:22310579-22310598 | None:intergenic | 35.0% | |
GTTAGAACAAGGACATAACT+AGG | - | chr7.2:22310131-22310150 | None:intergenic | 35.0% | |
TTGAAAGGTTAGAGCAAGAA+GGG | - | chr7.2:22309963-22309982 | None:intergenic | 35.0% | |
! | AAGATGCTTAAAGGGTCTTT+TGG | - | chr7.2:22310570-22310589 | None:intergenic | 35.0% |
! | GAACATAGTGACTCATTTTG+AGG | - | chr7.2:22310609-22310628 | None:intergenic | 35.0% |
! | GACTCATTTTGTTCTTCCTT+TGG | - | chr7.2:22310486-22310505 | None:intergenic | 35.0% |
!! | AGGAAAGGTTTGATTTTGAG+GGG | + | chr7.2:22310745-22310764 | MS.gene41712:CDS | 35.0% |
!! | ATTTTGAGGGTTTAAGGTGT+TGG | - | chr7.2:22310595-22310614 | None:intergenic | 35.0% |
!! | TGACTCATTTTGAGGGTTTA+AGG | - | chr7.2:22310601-22310620 | None:intergenic | 35.0% |
!!! | AAGCTTGTTTTAAGAGAGGT+GGG | - | chr7.2:22310635-22310654 | None:intergenic | 35.0% |
!!! | TAAGCTTGTTTTAAGAGAGG+TGG | - | chr7.2:22310636-22310655 | None:intergenic | 35.0% |
AAGACACTATGCAATGCATG+TGG | + | chr7.2:22310873-22310892 | MS.gene41712:CDS | 40.0% | |
AAGTGGATGTTGGAATGGAA+TGG | + | chr7.2:22310343-22310362 | MS.gene41712:CDS | 40.0% | |
ACTCACAAAAGTTGGACTCT+TGG | - | chr7.2:22310943-22310962 | None:intergenic | 40.0% | |
AGTGAACTCATGGTACCTAA+GGG | + | chr7.2:22310669-22310688 | MS.gene41712:CDS | 40.0% | |
ATAGTGTCTTTGGGCCTAAT+GGG | - | chr7.2:22310863-22310882 | None:intergenic | 40.0% | |
CATGCATTGCATAGTGTCTT+TGG | - | chr7.2:22310873-22310892 | None:intergenic | 40.0% | |
CTTGAAAGGTTAGAGCAAGA+AGG | - | chr7.2:22309964-22309983 | None:intergenic | 40.0% | |
GAACAAGGACATAACTAGGA+AGG | - | chr7.2:22310127-22310146 | None:intergenic | 40.0% | |
GGTTTCTTCACTGTGTTTGA+AGG | - | chr7.2:22310465-22310484 | None:intergenic | 40.0% | |
TAGTGAACTCATGGTACCTA+AGG | + | chr7.2:22310668-22310687 | MS.gene41712:CDS | 40.0% | |
TAGTGAGTGCAAACAAGAGA+AGG | + | chr7.2:22309930-22309949 | MS.gene41712:CDS | 40.0% | |
! | CCTCTTTTCTGCTCAAAACA+CGG | + | chr7.2:22309996-22310015 | MS.gene41712:CDS | 40.0% |
! | GTTAGCTGATAGTGAACTCA+TGG | + | chr7.2:22310659-22310678 | MS.gene41712:CDS | 40.0% |
!! | AAAGGGTCTTTTGGTCTTCT+TGG | - | chr7.2:22310561-22310580 | None:intergenic | 40.0% |
!! | GTTACCTCTTTTTCACCCTT+AGG | - | chr7.2:22310687-22310706 | None:intergenic | 40.0% |
!! | GTTTGATTTTGAGGGGTTTG+AGG | + | chr7.2:22310752-22310771 | MS.gene41712:CDS | 40.0% |
ACAAAAGTTGGACTCTTGGC+AGG | - | chr7.2:22310939-22310958 | None:intergenic | 45.0% | |
CAATGTGTACACCTCCTTGT+TGG | - | chr7.2:22310807-22310826 | None:intergenic | 45.0% | |
CAGGCAAAGCAAGAAGCAAA+AGG | + | chr7.2:22310520-22310539 | MS.gene41712:CDS | 45.0% | |
CATAGTGTCTTTGGGCCTAA+TGG | - | chr7.2:22310864-22310883 | None:intergenic | 45.0% | |
GAGCAGAAAAGAGGTCATCA+AGG | - | chr7.2:22309990-22310009 | None:intergenic | 45.0% | |
GGTACCTAAGGGTGAAAAAG+AGG | + | chr7.2:22310680-22310699 | MS.gene41712:CDS | 45.0% | |
GGTCATCAAGGCTACTTGAA+AGG | - | chr7.2:22309978-22309997 | None:intergenic | 45.0% | |
GTACACCTCCTTGTTGGAAT+TGG | - | chr7.2:22310801-22310820 | None:intergenic | 45.0% | |
GTAGGAAGTGGATGTTGGAA+TGG | + | chr7.2:22310338-22310357 | MS.gene41712:intron | 45.0% | |
GTGTGAGGTACAAATCTGGT+AGG | + | chr7.2:22310895-22310914 | MS.gene41712:CDS | 45.0% | |
TATGCAATGCATGTGGTGTG+AGG | + | chr7.2:22310880-22310899 | MS.gene41712:CDS | 45.0% | |
TGTGGTGTGAGGTACAAATC+TGG | + | chr7.2:22310891-22310910 | MS.gene41712:CDS | 45.0% | |
! | CTTTTGCTTCTTGCTTTGCC+TGG | - | chr7.2:22310522-22310541 | None:intergenic | 45.0% |
!! | CCGTGTTTTGAGCAGAAAAG+AGG | - | chr7.2:22309999-22310018 | None:intergenic | 45.0% |
ACAAAGGACCCCACAATGGA+GGG | + | chr7.2:22310833-22310852 | MS.gene41712:CDS | 50.0% | |
CTCTTGGCAGGTCTATACTC+AGG | - | chr7.2:22310927-22310946 | None:intergenic | 50.0% | |
GCTTTGCCTGGAACTGCAAA+AGG | - | chr7.2:22310510-22310529 | None:intergenic | 50.0% | |
TGTCACAAAGGACCCCACAA+TGG | + | chr7.2:22310829-22310848 | MS.gene41712:CDS | 50.0% | |
! | GAGTCACCTTTTGCAGTTCC+AGG | + | chr7.2:22310501-22310520 | MS.gene41712:CDS | 50.0% |
CACAAAGGACCCCACAATGG+AGG | + | chr7.2:22310832-22310851 | MS.gene41712:CDS | 55.0% | |
AATGGGCCTGCCCTCCATTG+TGG | - | chr7.2:22310846-22310865 | None:intergenic | 60.0% | |
ATGGGCCTGCCCTCCATTGT+GGG | - | chr7.2:22310845-22310864 | None:intergenic | 60.0% | |
CAATGGAGGGCAGGCCCATT+AGG | + | chr7.2:22310846-22310865 | MS.gene41712:CDS | 60.0% | |
AGGACCCCACAATGGAGGGC+AGG | + | chr7.2:22310837-22310856 | MS.gene41712:CDS | 65.0% | |
TGGGCCTGCCCTCCATTGTG+GGG | - | chr7.2:22310844-22310863 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 22309901 | 22311040 | 22309901 | ID=MS.gene41712 |
chr7.2 | mRNA | 22309901 | 22311040 | 22309901 | ID=MS.gene41712.t1;Parent=MS.gene41712 |
chr7.2 | exon | 22309901 | 22310017 | 22309901 | ID=MS.gene41712.t1.exon1;Parent=MS.gene41712.t1 |
chr7.2 | CDS | 22309901 | 22310017 | 22309901 | ID=cds.MS.gene41712.t1;Parent=MS.gene41712.t1 |
chr7.2 | exon | 22310342 | 22311040 | 22310342 | ID=MS.gene41712.t1.exon2;Parent=MS.gene41712.t1 |
chr7.2 | CDS | 22310342 | 22311040 | 22310342 | ID=cds.MS.gene41712.t1;Parent=MS.gene41712.t1 |
Gene Sequence |
Protein sequence |