Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41737.t1 | XP_003624635.1 | 99.3 | 1118 | 8 | 0 | 1 | 1118 | 1 | 1118 | 0.00E+00 | 2150.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41737.t1 | Q8BKC5 | 36.2 | 1111 | 658 | 16 | 28 | 1118 | 17 | 1096 | 1.7e-186 | 654.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41737.t1 | A5XEM2 | 99.3 | 1118 | 8 | 0 | 1 | 1118 | 1 | 1118 | 0.0e+00 | 2150.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene059007 | MS.gene41737 | 0.836325 | 1.00E-56 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41737.t1 | MTR_7g085820 | 99.374 | 1118 | 7 | 0 | 1 | 1118 | 1 | 1118 | 0.0 | 2285 |
MS.gene41737.t1 | MTR_8g085950 | 79.605 | 1113 | 222 | 3 | 7 | 1118 | 9 | 1117 | 0.0 | 1755 |
MS.gene41737.t1 | MTR_2g006750 | 25.749 | 1068 | 700 | 24 | 19 | 1065 | 2 | 997 | 1.39e-88 | 309 |
MS.gene41737.t1 | MTR_3g064930 | 27.495 | 1022 | 648 | 36 | 19 | 1013 | 77 | 1032 | 9.04e-75 | 268 |
MS.gene41737.t1 | MTR_3g064980 | 25.353 | 1061 | 726 | 25 | 43 | 1087 | 103 | 1113 | 1.36e-72 | 263 |
MS.gene41737.t1 | MTR_3g064910 | 45.532 | 235 | 126 | 1 | 884 | 1118 | 529 | 761 | 8.30e-62 | 226 |
MS.gene41737.t1 | MTR_3g064910 | 28.333 | 540 | 351 | 17 | 37 | 552 | 48 | 575 | 4.84e-46 | 178 |
MS.gene41737.t1 | MTR_3g064940 | 24.403 | 922 | 600 | 27 | 25 | 909 | 64 | 925 | 3.57e-42 | 168 |
MS.gene41737.t1 | MTR_3g065010 | 24.554 | 896 | 577 | 22 | 38 | 911 | 103 | 921 | 4.46e-42 | 167 |
MS.gene41737.t1 | MTR_7g098920 | 59.677 | 124 | 16 | 3 | 893 | 1012 | 6 | 99 | 6.08e-36 | 133 |
MS.gene41737.t1 | MTR_3g064935 | 44.898 | 98 | 53 | 1 | 990 | 1087 | 38 | 134 | 1.09e-20 | 90.1 |
MS.gene41737.t1 | MTR_8g099855 | 37.500 | 144 | 72 | 3 | 945 | 1087 | 258 | 384 | 3.73e-20 | 94.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41737.t1 | AT5G19820 | 74.373 | 1116 | 280 | 4 | 4 | 1118 | 6 | 1116 | 0.0 | 1714 |
MS.gene41737.t1 | AT4G27640 | 24.748 | 1091 | 745 | 22 | 22 | 1095 | 5 | 1036 | 2.29e-83 | 294 |
MS.gene41737.t1 | AT2G16950 | 22.149 | 605 | 378 | 22 | 70 | 615 | 67 | 637 | 6.57e-11 | 67.4 |
Find 282 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCTGCTCTTTCATGCTTTC+TGG | -0.040025 | 7.2:-22057837 | None:intergenic |
TGTAAAGCTTCCACCAAATT+TGG | 0.127943 | 7.2:-22056804 | None:intergenic |
TCTTCTCAGGCAGCTGTTTA+TGG | 0.130988 | 7.2:+22059118 | MS.gene41737:intron |
GTGGACATGGTGCGTATTTC+GGG | 0.145864 | 7.2:-22051069 | None:intergenic |
TGATTATATAATTCCAAATT+TGG | 0.146239 | 7.2:+22056791 | MS.gene41737:CDS |
CTTCATGGAAGTAAAATTTA+AGG | 0.147973 | 7.2:-22056561 | None:intergenic |
GTGAGAGAGTTTGAGGATTA+AGG | 0.166281 | 7.2:-22051025 | None:intergenic |
CATTTGTAATATTAGGTTTC+AGG | 0.184402 | 7.2:+22052276 | MS.gene41737:intron |
AAATAAGGTACTAAAATATC+TGG | 0.209428 | 7.2:-22054035 | None:intergenic |
TTATGTTGCTACAGATATTA+TGG | 0.209828 | 7.2:+22058942 | MS.gene41737:intron |
TGAATTGCTGCCAACTTATT+TGG | 0.239895 | 7.2:+22052756 | MS.gene41737:CDS |
GGGCAATTGTCCACAGATTT+GGG | 0.246478 | 7.2:+22053194 | MS.gene41737:CDS |
GGTGGACATGGTGCGTATTT+CGG | 0.253645 | 7.2:-22051070 | None:intergenic |
TGGGCAATTGTCCACAGATT+TGG | 0.253832 | 7.2:+22053193 | MS.gene41737:CDS |
TCTCTGATGACCTCGCTTCT+TGG | 0.257887 | 7.2:+22051271 | MS.gene41737:CDS |
GCGCAATTGGCGCATTATAT+TGG | 0.268215 | 7.2:+22051372 | MS.gene41737:CDS |
GGACATGAGGTTTGTGATTA+GGG | 0.272045 | 7.2:-22050935 | None:intergenic |
AGCATCAAAGTCCTCTTCTT+TGG | 0.274091 | 7.2:-22057864 | None:intergenic |
GAGGCGAGAGAGCGTGCTCC+TGG | 0.277486 | 7.2:+22052526 | MS.gene41737:CDS |
TTGACTGAGGCATTGAATTC+TGG | 0.283347 | 7.2:+22052325 | MS.gene41737:CDS |
GCAGGTGATGACAAAGAATT+TGG | 0.302259 | 7.2:+22053094 | MS.gene41737:intron |
CTGCCTTCCTAACTTCTTCA+TGG | 0.303161 | 7.2:-22056576 | None:intergenic |
CTAAGTTGCTTGCCTATAAA+AGG | 0.312335 | 7.2:+22060412 | MS.gene41737:CDS |
CTCACAATCCCATCCAAATA+AGG | 0.313213 | 7.2:-22054050 | None:intergenic |
CTTCTCAGGCAGCTGTTTAT+GGG | 0.313525 | 7.2:+22059119 | MS.gene41737:intron |
GTTAGGAAGGCAGCAGCTTC+AGG | 0.319059 | 7.2:+22056586 | MS.gene41737:CDS |
GCACAAATGGCTCTAATTCT+AGG | 0.322349 | 7.2:+22050889 | MS.gene41737:CDS |
TTTACTTCCATGAAGAAGTT+AGG | 0.325716 | 7.2:+22056569 | MS.gene41737:CDS |
TGGAAAGATATTGATTGTTA+TGG | 0.326132 | 7.2:-22060641 | None:intergenic |
TGCTAGATTGGCGATTGCTT+GGG | 0.326637 | 7.2:+22058036 | MS.gene41737:intron |
GAGTTTGAGGATTAAGGAAT+CGG | 0.328747 | 7.2:-22051019 | None:intergenic |
GGTTATTTATCTCAGGTATC+AGG | 0.333202 | 7.2:+22057743 | MS.gene41737:intron |
AGATCAGATAAAGAACTTAT+AGG | 0.333704 | 7.2:+22060618 | MS.gene41737:intron |
ATGGTGCGTATTTCGGGGTT+AGG | 0.335218 | 7.2:-22051063 | None:intergenic |
GCCCACCGCACCCGAGGGTT+TGG | 0.335815 | 7.2:-22053155 | None:intergenic |
AGATAGACTTTCAATTGCTT+TGG | 0.339365 | 7.2:+22052705 | MS.gene41737:CDS |
CCTGTCACGGTCGGATGAAT+TGG | 0.340721 | 7.2:-22051523 | None:intergenic |
TTGGGAACGTTGGTCGTTGA+TGG | 0.340981 | 7.2:-22050959 | None:intergenic |
TTCCAATGATGCTAGGCTTC+AGG | 0.345498 | 7.2:+22051329 | MS.gene41737:CDS |
CAAACTTCTTGTACTCCTTC+AGG | 0.347009 | 7.2:+22054073 | MS.gene41737:CDS |
CAGGCAGCTGTTTATGGGGT+TGG | 0.353036 | 7.2:+22059124 | MS.gene41737:intron |
CGGAGAGTGGATTGAGTTGA+AGG | 0.356862 | 7.2:-22051156 | None:intergenic |
AGATTTGGGGCCAGACTTGC+AGG | 0.357142 | 7.2:+22053208 | MS.gene41737:CDS |
GATAGACTTTCAATTGCTTT+GGG | 0.359150 | 7.2:+22052706 | MS.gene41737:CDS |
TGGTGCGTATTTCGGGGTTA+GGG | 0.360152 | 7.2:-22051062 | None:intergenic |
CTCCTGAAGCCTAGCATCAT+TGG | 0.367008 | 7.2:-22051331 | None:intergenic |
GAACTTCTCATTGAGCTTGC+TGG | 0.367665 | 7.2:+22052376 | MS.gene41737:CDS |
AACTTCTCATTGAGCTTGCT+GGG | 0.371868 | 7.2:+22052377 | MS.gene41737:CDS |
GATAATGCTGTTTCAGCTCT+TGG | 0.372944 | 7.2:+22059468 | MS.gene41737:CDS |
GTTGGTGTCTGTGCCGAGTT+TGG | 0.373481 | 7.2:+22059142 | MS.gene41737:CDS |
GTTGCTTGTGTTCGCGCAAT+TGG | 0.377292 | 7.2:+22051359 | MS.gene41737:CDS |
TGGATTTGATTGGTTCTTGA+TGG | 0.378559 | 7.2:-22051200 | None:intergenic |
TTCATGCTTTCTGGATGAAC+TGG | 0.379901 | 7.2:-22057828 | None:intergenic |
TTTGCTGAAGACAACAGTTC+TGG | 0.380717 | 7.2:-22056708 | None:intergenic |
CGATCAAAACCAGGCACAAA+TGG | 0.382121 | 7.2:+22050876 | MS.gene41737:CDS |
TTATGCTATCACGGTGGAAC+TGG | 0.382701 | 7.2:-22059500 | None:intergenic |
GGAGGAGGTGAGAGAGTTTG+AGG | 0.383052 | 7.2:-22051032 | None:intergenic |
TGGACATGAGGTTTGTGATT+AGG | 0.384621 | 7.2:-22050936 | None:intergenic |
TGGGCGGCTATAAATGCAAT+TGG | 0.394396 | 7.2:+22053173 | MS.gene41737:CDS |
ATATCACCACTTAGTGCTTC+CGG | 0.396365 | 7.2:+22053235 | MS.gene41737:CDS |
CTGTTGGAAAAGAGAAGTTC+AGG | 0.396414 | 7.2:+22054837 | MS.gene41737:CDS |
ATTATGTGCGGGGACTGATT+TGG | 0.397041 | 7.2:+22060795 | MS.gene41737:CDS |
CGGGGTTAGGGGAAGTGTGG+AGG | 0.397844 | 7.2:-22051050 | None:intergenic |
TGATATTTATCCTGCAAGTC+TGG | 0.398002 | 7.2:-22053218 | None:intergenic |
GAAGCTATGCGACACCGTTT+CGG | 0.399962 | 7.2:+22051230 | MS.gene41737:CDS |
AGCAATGGAGTGTATTAGTT+TGG | 0.400859 | 7.2:+22054805 | MS.gene41737:CDS |
TCCAAAACAATTAGGATGAT+AGG | 0.406142 | 7.2:-22060945 | None:intergenic |
GTCACTGCAACAATCTCAAC+TGG | 0.407046 | 7.2:+22055048 | MS.gene41737:CDS |
GAGTAGACAATTGAGGAAGT+AGG | 0.408750 | 7.2:-22051401 | None:intergenic |
TGTGCTAATGAATTTGTTGT+TGG | 0.411222 | 7.2:+22052591 | MS.gene41737:CDS |
ACTGTTGTCTTCAGCAAAAT+CGG | 0.411583 | 7.2:+22056713 | MS.gene41737:CDS |
GCATGACCTTCTTTGTTCAA+TGG | 0.413646 | 7.2:+22060459 | MS.gene41737:CDS |
AGTAGACAATTGAGGAAGTA+GGG | 0.415176 | 7.2:-22051400 | None:intergenic |
GTGTATTAGTTTGGTAGGTA+TGG | 0.417445 | 7.2:+22054814 | MS.gene41737:CDS |
CTAGGCTTTGCAAGTGCCTC+GGG | 0.424997 | 7.2:+22055242 | MS.gene41737:CDS |
GAGACTAGTAACTACGGATT+TGG | 0.426002 | 7.2:+22052670 | MS.gene41737:CDS |
CGCACCCGAGGGTTTGGATC+AGG | 0.426653 | 7.2:-22053149 | None:intergenic |
GGTTGCAGGTTGTTCCAGCC+TGG | 0.427510 | 7.2:+22060389 | MS.gene41737:intron |
TATGTCATCAGGCGTGGGCT+AGG | 0.428774 | 7.2:+22055224 | MS.gene41737:intron |
GGTTAGGGGAAGTGTGGAGG+AGG | 0.428933 | 7.2:-22051047 | None:intergenic |
GAAATTTGTGCAAGCATGTT+GGG | 0.429694 | 7.2:+22056926 | MS.gene41737:CDS |
TTTGGAGCATGTATTATCAA+TGG | 0.431536 | 7.2:+22053112 | MS.gene41737:CDS |
TTAGTGCTTCCGGCATTAGC+TGG | 0.434177 | 7.2:+22053245 | MS.gene41737:CDS |
GCTAGGCTTTGCAAGTGCCT+CGG | 0.435027 | 7.2:+22055241 | MS.gene41737:CDS |
TTCTTAACGATGGATTTGAT+TGG | 0.437781 | 7.2:-22051210 | None:intergenic |
ATCCAAACCCTCGGGTGCGG+TGG | 0.438594 | 7.2:+22053153 | MS.gene41737:CDS |
TAGTGCTGCTACTTCCTCTT+CGG | 0.440238 | 7.2:+22051449 | MS.gene41737:CDS |
GTTCAGGGACGATGCCAAAC+AGG | 0.443445 | 7.2:+22054853 | MS.gene41737:CDS |
AAAAGAAGCGGAAGCAAGTC+AGG | 0.444656 | 7.2:-22051294 | None:intergenic |
ACTAATACACTCCATTGCTT+TGG | 0.446076 | 7.2:-22054801 | None:intergenic |
CTCACCGCAGCATGCCAAGC+AGG | 0.448315 | 7.2:-22052628 | None:intergenic |
AGAAGAAGGGACTCGCCATT+TGG | 0.448470 | 7.2:+22052477 | MS.gene41737:CDS |
GGCATGACAAAACCCATGTA+TGG | 0.449433 | 7.2:-22055277 | None:intergenic |
AGTTTGAGGATTAAGGAATC+GGG | 0.451683 | 7.2:-22051018 | None:intergenic |
TATAGGCAAGCAACTTAGCC+AGG | 0.454237 | 7.2:-22060407 | None:intergenic |
GAGAAGAAGAGAACGGAGAG+TGG | 0.454619 | 7.2:-22051169 | None:intergenic |
CTTGCACAAATTTCTACCTC+TGG | 0.455019 | 7.2:-22056917 | None:intergenic |
GTGCTAGATTGGCGATTGCT+TGG | 0.457692 | 7.2:+22058035 | MS.gene41737:intron |
ATCTAGATGAAAAGCAAGTA+AGG | 0.458320 | 7.2:+22057771 | MS.gene41737:CDS |
CCAATTCATCCGACCGTGAC+AGG | 0.458336 | 7.2:+22051523 | MS.gene41737:CDS |
CAGTTTGTAAAGAAGTTGTT+TGG | 0.458846 | 7.2:+22052568 | MS.gene41737:CDS |
CAGGCTTAAGTTGTGCAGAC+TGG | 0.467586 | 7.2:-22055309 | None:intergenic |
AATAAGGTACTAAAATATCT+GGG | 0.467659 | 7.2:-22054034 | None:intergenic |
TTTCAACCATTGAACAAAGA+AGG | 0.467766 | 7.2:-22060465 | None:intergenic |
ATTATCAGAATGCTGTGCAT+TGG | 0.469285 | 7.2:-22059433 | None:intergenic |
TGGATTGAGTTGAAGGGGAG+AGG | 0.469956 | 7.2:-22051149 | None:intergenic |
GGCAAGCAACTTAGCCAGGC+TGG | 0.471152 | 7.2:-22060403 | None:intergenic |
GACTTTCAATTGCTTTGGGC+GGG | 0.473563 | 7.2:+22052710 | MS.gene41737:CDS |
TTGCAAGCTTCAAGCAAGAA+TGG | 0.473957 | 7.2:-22058975 | None:intergenic |
GGCAGCAATTCAGACGCAAC+TGG | 0.474296 | 7.2:-22052745 | None:intergenic |
GCAGGACTTCCTCCCATACA+TGG | 0.476423 | 7.2:+22055264 | MS.gene41737:CDS |
TGGAAAGCAGATGGTTCAAG+AGG | 0.476999 | 7.2:+22054527 | MS.gene41737:CDS |
CTTCTACAGAGGCACTTTCA+AGG | 0.478037 | 7.2:+22059388 | MS.gene41737:intron |
CAGGTTGAAGCTAGGGTAGA+AGG | 0.478075 | 7.2:-22060880 | None:intergenic |
CTTATTTGGCTGCCTCTGAA+TGG | 0.481987 | 7.2:+22052770 | MS.gene41737:CDS |
ACTCTCGGGGATAAAAGAAT+AGG | 0.482856 | 7.2:+22056335 | MS.gene41737:CDS |
AATGTCATCAAATATACAAA+TGG | 0.487724 | 7.2:-22058760 | None:intergenic |
CTTACTTATGAGCTGCTTCG+CGG | 0.490569 | 7.2:-22058794 | None:intergenic |
GACGAAAGCTCTTCAAAGAA+AGG | 0.491643 | 7.2:-22058093 | None:intergenic |
GAATTAGAGCCATTTGTGCC+TGG | 0.493360 | 7.2:-22050885 | None:intergenic |
GATTCGAAGTGGGTTGAATC+CGG | 0.493509 | 7.2:-22050913 | None:intergenic |
TTATCAGAATGCTGTGCATT+GGG | 0.497165 | 7.2:-22059432 | None:intergenic |
AGAAATTTGTGCAAGCATGT+TGG | 0.498176 | 7.2:+22056925 | MS.gene41737:CDS |
CATATAGGTTGCTTCCACAT+TGG | 0.499173 | 7.2:+22056531 | MS.gene41737:intron |
AGGTGATTTAATCGAGGCTA+AGG | 0.501348 | 7.2:+22060432 | MS.gene41737:CDS |
AGGCAAATTGTTGACATTGT+TGG | 0.502918 | 7.2:+22052421 | MS.gene41737:CDS |
GACCAGTGTCTTGGAGGAGA+AGG | 0.504137 | 7.2:+22056364 | MS.gene41737:CDS |
TTGCTACGCTGATGAGTTGA+AGG | 0.504595 | 7.2:+22056409 | MS.gene41737:CDS |
GAGGATTAAGGAATCGGGAT+AGG | 0.504738 | 7.2:-22051013 | None:intergenic |
AGGCATTAAGACCAGTGTCT+TGG | 0.504923 | 7.2:+22056355 | MS.gene41737:CDS |
CGCACTGAATGAATGCATAC+AGG | 0.505412 | 7.2:+22056949 | MS.gene41737:CDS |
TGTGATTAGGGATTCGAAGT+GGG | 0.507731 | 7.2:-22050923 | None:intergenic |
AGCATTGAAACCATTACTCT+CGG | 0.515898 | 7.2:+22056320 | MS.gene41737:intron |
ACGATGACCAGGTTGAAGCT+AGG | 0.518865 | 7.2:-22060888 | None:intergenic |
CATTAAGACCAGTGTCTTGG+AGG | 0.520829 | 7.2:+22056358 | MS.gene41737:CDS |
AAACCCTCGGGTGCGGTGGG+CGG | 0.521210 | 7.2:+22053157 | MS.gene41737:CDS |
AGCAAAATCGGCTATAGAGA+AGG | 0.523446 | 7.2:+22056725 | MS.gene41737:CDS |
CAACAAACTCAATAGCCAAA+TGG | 0.523533 | 7.2:-22052492 | None:intergenic |
GGAGAGTGGATTGAGTTGAA+GGG | 0.524186 | 7.2:-22051155 | None:intergenic |
ATGGAGTGTATTAGTTTGGT+AGG | 0.525634 | 7.2:+22054809 | MS.gene41737:CDS |
AATTGCAGAGGGTTGTTCAA+AGG | 0.526620 | 7.2:+22052828 | MS.gene41737:CDS |
TCCAAACCCTCGGGTGCGGT+GGG | 0.527222 | 7.2:+22053154 | MS.gene41737:CDS |
GAATTTGTTGTTGGATGTTG+AGG | 0.527410 | 7.2:+22052600 | MS.gene41737:CDS |
CAGTCAATGTCTGCATCATG+AGG | 0.527836 | 7.2:-22052309 | None:intergenic |
TTCTTTGTTCAATGGTTGAA+AGG | 0.529928 | 7.2:+22060467 | MS.gene41737:CDS |
TTCTCAGGCAGCTGTTTATG+GGG | 0.531178 | 7.2:+22059120 | MS.gene41737:intron |
AGGCGAGAGAGCGTGCTCCT+GGG | 0.532344 | 7.2:+22052527 | MS.gene41737:CDS |
GCATTGAAACCATTACTCTC+GGG | 0.533758 | 7.2:+22056321 | MS.gene41737:intron |
GGGTTACTTCCAATGATGCT+AGG | 0.533828 | 7.2:+22051322 | MS.gene41737:CDS |
GCTTTGCAAGTGCCTCGGGC+AGG | 0.534139 | 7.2:+22055246 | MS.gene41737:CDS |
TGGTCAAGAGGCAACTGCAC+AGG | 0.535935 | 7.2:+22052345 | MS.gene41737:CDS |
GAGGCTGAGTCATTAGAAGA+AGG | 0.539348 | 7.2:+22052463 | MS.gene41737:CDS |
TCCGGCATTAGCTGGAGCCA+TGG | 0.539722 | 7.2:+22053253 | MS.gene41737:CDS |
AGCAGAGAGAGCCAAAGAAG+AGG | 0.540126 | 7.2:+22057853 | MS.gene41737:CDS |
GCGTGAGATGACGACGGAGG+AGG | 0.540424 | 7.2:-22051095 | None:intergenic |
GAGAGTGGATTGAGTTGAAG+GGG | 0.541926 | 7.2:-22051154 | None:intergenic |
CATTTCCTGATCCAAACCCT+CGG | 0.542062 | 7.2:+22053144 | MS.gene41737:CDS |
TAGTAACTACGGATTTGGTC+AGG | 0.542717 | 7.2:+22052675 | MS.gene41737:CDS |
GGTGCGTATTTCGGGGTTAG+GGG | 0.543193 | 7.2:-22051061 | None:intergenic |
GCAAAATCGGCTATAGAGAA+GGG | 0.543836 | 7.2:+22056726 | MS.gene41737:CDS |
GAAAACAGATCCACCAAACT+CGG | 0.543899 | 7.2:-22059155 | None:intergenic |
ATTTCCTGATCCAAACCCTC+GGG | 0.544085 | 7.2:+22053145 | MS.gene41737:CDS |
TTGAGGGTGCAACGATGACC+AGG | 0.544184 | 7.2:-22060899 | None:intergenic |
CGATGACCAGGTTGAAGCTA+GGG | 0.546350 | 7.2:-22060887 | None:intergenic |
GGTGTCTGTGCCGAGTTTGG+TGG | 0.546933 | 7.2:+22059145 | MS.gene41737:CDS |
CTGATCCAAACCCTCGGGTG+CGG | 0.549434 | 7.2:+22053150 | MS.gene41737:CDS |
AATGGCTCTAATTCTAGGAC+CGG | 0.549460 | 7.2:+22050894 | MS.gene41737:CDS |
AGTTTGGTAGGTATGGCTGT+TGG | 0.550737 | 7.2:+22054821 | MS.gene41737:CDS |
ACAGCATTCTGATAATGTAA+TGG | 0.552103 | 7.2:+22059440 | MS.gene41737:CDS |
GGGCGGCTATAAATGCAATT+GGG | 0.552920 | 7.2:+22053174 | MS.gene41737:CDS |
TCAGAGGCAGCCAAATAAGT+TGG | 0.553225 | 7.2:-22052766 | None:intergenic |
GGCAATTCTCCTTTCCTCTG+AGG | 0.555040 | 7.2:-22058739 | None:intergenic |
CTGAGCCACGTTTCCTGCGG+AGG | 0.555443 | 7.2:+22052401 | MS.gene41737:CDS |
TTGGCATGCTGCGGTGAGCG+AGG | 0.555498 | 7.2:+22052633 | MS.gene41737:CDS |
TGTCAACAATTTGCCTCCGC+AGG | 0.556267 | 7.2:-22052414 | None:intergenic |
GAATGAAGAGTAGACAATTG+AGG | 0.556981 | 7.2:-22051408 | None:intergenic |
GCTGATGTAATTGACACGTC+AGG | 0.557042 | 7.2:-22055328 | None:intergenic |
AACAACTTCTTTACAAACTG+CGG | 0.559246 | 7.2:-22052565 | None:intergenic |
TTATATAATTCCAAATTTGG+TGG | 0.559998 | 7.2:+22056794 | MS.gene41737:CDS |
ATCAGTCGCTGATTCTTCAC+AGG | 0.561950 | 7.2:+22054569 | MS.gene41737:CDS |
TCCATGGCTCCAGCTAATGC+CGG | 0.563505 | 7.2:-22053254 | None:intergenic |
TGAGTGTTCAGATGTTCGAC+AGG | 0.565579 | 7.2:+22059001 | MS.gene41737:CDS |
CTTCCATGAAGAAGTTAGGA+AGG | 0.568668 | 7.2:+22056573 | MS.gene41737:CDS |
TTTCGGGGTTAGGGGAAGTG+TGG | 0.570235 | 7.2:-22051053 | None:intergenic |
ATGATGTAGATATTATGTGC+GGG | 0.570591 | 7.2:+22060784 | MS.gene41737:intron |
GAAAGGGAACTTACAAACAT+AGG | 0.571714 | 7.2:-22058126 | None:intergenic |
TGAGTTGAAGGGGAGAGGTG+TGG | 0.572248 | 7.2:-22051144 | None:intergenic |
TGGAAGTAAAATTTAAGGAG+AGG | 0.574089 | 7.2:-22056556 | None:intergenic |
ATAGCCGCCCACCGCACCCG+AGG | 0.574957 | 7.2:-22053161 | None:intergenic |
AGCGTGCTCCTGGGATGATG+AGG | 0.575247 | 7.2:+22052536 | MS.gene41737:CDS |
GCTAGATTGGCGATTGCTTG+GGG | 0.575752 | 7.2:+22058037 | MS.gene41737:intron |
AGCAGAAGCGAGTTCCGAAA+CGG | 0.576464 | 7.2:-22051244 | None:intergenic |
CAAGTCTGGCCCCAAATCTG+TGG | 0.576849 | 7.2:-22053204 | None:intergenic |
GAAGTGCAAGTTGTTGTTGA+GGG | 0.578046 | 7.2:-22060915 | None:intergenic |
ACCTGTCTTCCAGGAGCCAG+AGG | 0.578090 | 7.2:+22056901 | MS.gene41737:intron |
GGCATTGAATTCTGGTCAAG+AGG | 0.578146 | 7.2:+22052333 | MS.gene41737:CDS |
TTCTTCTAATGACTCAGCCT+CGG | 0.578657 | 7.2:-22052461 | None:intergenic |
AGCCTCGGCAATCTGCAGCA+TGG | 0.581379 | 7.2:-22052446 | None:intergenic |
CTTCTACCCTAGCTTCAACC+TGG | 0.583452 | 7.2:+22060881 | MS.gene41737:CDS |
GAAATTGATACTTGCAGCAA+GGG | 0.585035 | 7.2:-22051487 | None:intergenic |
TATGCTTCGTGCCAAAGCAA+TGG | 0.585169 | 7.2:+22054790 | MS.gene41737:CDS |
ATGCCAACCTGGTCAATCCA+AGG | 0.585232 | 7.2:-22056443 | None:intergenic |
GTCGCATAGCTTCTTAACGA+TGG | 0.586119 | 7.2:-22051220 | None:intergenic |
ACTGCTGGTTATACCTGTCA+CGG | 0.586216 | 7.2:-22051536 | None:intergenic |
GGCAATTGTCCACAGATTTG+GGG | 0.586673 | 7.2:+22053195 | MS.gene41737:CDS |
TAGCCGCCCACCGCACCCGA+GGG | 0.589983 | 7.2:-22053160 | None:intergenic |
AGACTTTCAATTGCTTTGGG+CGG | 0.591625 | 7.2:+22052709 | MS.gene41737:CDS |
AGGCTGAGTCATTAGAAGAA+GGG | 0.592282 | 7.2:+22052464 | MS.gene41737:CDS |
TACGCTGATGAGTTGAAGGA+AGG | 0.594226 | 7.2:+22056413 | MS.gene41737:CDS |
GCATGACAAAACCCATGTAT+GGG | 0.594926 | 7.2:-22055276 | None:intergenic |
TGATAGCATAAATGCAGCAC+AGG | 0.595998 | 7.2:+22059512 | MS.gene41737:CDS |
GCACTTGCACAAATTGCAGA+GGG | 0.597196 | 7.2:+22052817 | MS.gene41737:CDS |
AGCCTTCTCCTCCAAGACAC+TGG | 0.597210 | 7.2:-22056366 | None:intergenic |
GAGTAACTGACCTCCAACAA+GGG | 0.597739 | 7.2:-22059182 | None:intergenic |
TGCACTTGCACAAATTGCAG+AGG | 0.597774 | 7.2:+22052816 | MS.gene41737:CDS |
CAGGACTTCCTCCCATACAT+GGG | 0.597797 | 7.2:+22055265 | MS.gene41737:CDS |
AGTCAATGTCTGCATCATGA+GGG | 0.598271 | 7.2:-22052308 | None:intergenic |
AAGACAAAACCTCAGAGGAA+AGG | 0.598498 | 7.2:+22058730 | MS.gene41737:CDS |
ACGGAGGAGGATGGTGGACA+TGG | 0.599090 | 7.2:-22051082 | None:intergenic |
TGATCCTGCTTGGCATGCTG+CGG | 0.600005 | 7.2:+22052624 | MS.gene41737:CDS |
GGAACGTTGGTCGTTGATGG+TGG | 0.600639 | 7.2:-22050956 | None:intergenic |
TTGTGATTAGGGATTCGAAG+TGG | 0.600736 | 7.2:-22050924 | None:intergenic |
TGTTGGAAAAGAGAAGTTCA+GGG | 0.601486 | 7.2:+22054838 | MS.gene41737:CDS |
ATAGAGAAGGGGCAGTCACA+AGG | 0.604230 | 7.2:+22056738 | MS.gene41737:CDS |
AAGTTGTGCAGACTGGAGCA+AGG | 0.604837 | 7.2:-22055302 | None:intergenic |
AAACAATTAGGATGATAGGA+TGG | 0.605832 | 7.2:-22060941 | None:intergenic |
TGTAACATGTAACTCGCGGT+TGG | 0.607384 | 7.2:-22055082 | None:intergenic |
GGTAACTTCCTCATCATCCC+AGG | 0.608657 | 7.2:-22052544 | None:intergenic |
GTGCTGCATTTATGCTATCA+CGG | 0.611301 | 7.2:-22059509 | None:intergenic |
TGTGCAGACTGGAGCAAGGG+AGG | 0.611908 | 7.2:-22055298 | None:intergenic |
ATTATAGAGTGGAAAGCAGA+TGG | 0.615282 | 7.2:+22054518 | MS.gene41737:intron |
TGAAGAAAGAGAACTACTCA+AGG | 0.616789 | 7.2:+22057886 | MS.gene41737:CDS |
ATGTTGAGGATGATCCTGCT+TGG | 0.618105 | 7.2:+22052614 | MS.gene41737:CDS |
TCAAGAGGCAACTGCACAGG+AGG | 0.618446 | 7.2:+22052348 | MS.gene41737:CDS |
GGCGTTGAACGATCAAAACC+AGG | 0.620419 | 7.2:+22050867 | MS.gene41737:CDS |
GGACTGAGCCACGTTTCCTG+CGG | 0.621090 | 7.2:+22052398 | MS.gene41737:CDS |
ATTTGCCTCCGCAGGAAACG+TGG | 0.621262 | 7.2:-22052406 | None:intergenic |
ATTGATACTTGCAGCAAGGG+CGG | 0.621696 | 7.2:-22051484 | None:intergenic |
AATTTGATGAAGATGATGAC+AGG | 0.621774 | 7.2:+22055365 | MS.gene41737:CDS |
GAGATGACGACGGAGGAGGA+TGG | 0.621924 | 7.2:-22051091 | None:intergenic |
CGAAATTGATACTTGCAGCA+AGG | 0.622904 | 7.2:-22051488 | None:intergenic |
TGAGTAACTGACCTCCAACA+AGG | 0.625252 | 7.2:-22059183 | None:intergenic |
GCTGGTGAGACTAGTAACTA+CGG | 0.626383 | 7.2:+22052664 | MS.gene41737:CDS |
GTGAGCGAGGATGATGATGC+TGG | 0.627605 | 7.2:+22052646 | MS.gene41737:CDS |
GAGATGAGAGAAGAAGAGAA+CGG | 0.627726 | 7.2:-22051176 | None:intergenic |
AGTTGTGCAGACTGGAGCAA+GGG | 0.630199 | 7.2:-22055301 | None:intergenic |
GTCAATGTCTGCATCATGAG+GGG | 0.630206 | 7.2:-22052307 | None:intergenic |
TGAAGTGCAAGTTGTTGTTG+AGG | 0.630485 | 7.2:-22060916 | None:intergenic |
GGTCGTTGATGGTGGACATG+AGG | 0.631868 | 7.2:-22050948 | None:intergenic |
ATGACGACGGAGGAGGATGG+TGG | 0.632074 | 7.2:-22051088 | None:intergenic |
TATGATGTAGATATTATGTG+CGG | 0.632192 | 7.2:+22060783 | MS.gene41737:intron |
GCAAGTCAGGCCAAGAAGCG+AGG | 0.632791 | 7.2:-22051281 | None:intergenic |
CATTGAAACCATTACTCTCG+GGG | 0.635821 | 7.2:+22056322 | MS.gene41737:CDS |
TGGACATGGTGCGTATTTCG+GGG | 0.642855 | 7.2:-22051068 | None:intergenic |
AAAGTGCAAACCTGTACTCG+AGG | 0.643138 | 7.2:-22053290 | None:intergenic |
CTGGTTATACCTGTCACGGT+CGG | 0.644881 | 7.2:-22051532 | None:intergenic |
CAAAATCGGCTATAGAGAAG+GGG | 0.649523 | 7.2:+22056727 | MS.gene41737:CDS |
TGATGTAGATATTATGTGCG+GGG | 0.651326 | 7.2:+22060785 | MS.gene41737:intron |
TGCCATGCTGCAGATTGCCG+AGG | 0.655913 | 7.2:+22052444 | MS.gene41737:CDS |
TGACAAAACCCATGTATGGG+AGG | 0.656396 | 7.2:-22055273 | None:intergenic |
ATAAGGTACTAAAATATCTG+GGG | 0.656506 | 7.2:-22054033 | None:intergenic |
TTTGGTGGAAGCTTTACACA+AGG | 0.658617 | 7.2:+22056809 | MS.gene41737:CDS |
TATAAAAGGTGATTTAATCG+AGG | 0.661157 | 7.2:+22060426 | MS.gene41737:CDS |
CTAATGCCGGAAGCACTAAG+TGG | 0.661368 | 7.2:-22053241 | None:intergenic |
AGTAACTGACCTCCAACAAG+GGG | 0.665562 | 7.2:-22059181 | None:intergenic |
AAAGCAAGTAAGGAGCATTG+TGG | 0.670200 | 7.2:+22057781 | MS.gene41737:CDS |
GGAAAGCAGATGGTTCAAGA+GGG | 0.674345 | 7.2:+22054528 | MS.gene41737:CDS |
TACTTGTAACATGTAACTCG+CGG | 0.676630 | 7.2:-22055086 | None:intergenic |
AGATGAAAGAGTCGTCGTGG+TGG | 0.677354 | 7.2:-22051119 | None:intergenic |
GTTTGTTGTTACACTTGCTG+AGG | 0.679801 | 7.2:+22052507 | MS.gene41737:CDS |
GGCAATACGAACATCCGAAG+AGG | 0.686647 | 7.2:-22051463 | None:intergenic |
GGGTAAAGACAAAACCTCAG+AGG | 0.692614 | 7.2:+22058725 | MS.gene41737:intron |
TTTAAGGAGAGGAACCAATG+TGG | 0.693314 | 7.2:-22056545 | None:intergenic |
CAACTGAACAAACTGTGAGT+CGG | 0.697226 | 7.2:+22060818 | MS.gene41737:CDS |
GGCGCGTGAGATGACGACGG+AGG | 0.701509 | 7.2:-22051098 | None:intergenic |
CATGATGCAGACATTGACTG+AGG | 0.701645 | 7.2:+22052312 | MS.gene41737:CDS |
ATGGGAGGAAGTCCTGCCCG+AGG | 0.705946 | 7.2:-22055258 | None:intergenic |
CAAGTGCAACGAGTGCAGCA+TGG | 0.707450 | 7.2:-22052801 | None:intergenic |
GTTGAAGCTAGGGTAGAAGG+CGG | 0.717344 | 7.2:-22060877 | None:intergenic |
GATAGATGAAAGAGTCGTCG+TGG | 0.754182 | 7.2:-22051122 | None:intergenic |
GGTGGCGCGTGAGATGACGA+CGG | 0.767695 | 7.2:-22051101 | None:intergenic |
CTGCATTTATGCTATCACGG+TGG | 0.809952 | 7.2:-22059506 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 22050865 | 22060957 | 22050865 | ID=MS.gene41737 |
chr7.2 | mRNA | 22050865 | 22060957 | 22050865 | ID=MS.gene41737.t1;Parent=MS.gene41737 |
chr7.2 | exon | 22050865 | 22051544 | 22050865 | ID=MS.gene41737.t1.exon1;Parent=MS.gene41737.t1 |
chr7.2 | CDS | 22050865 | 22051544 | 22050865 | ID=cds.MS.gene41737.t1;Parent=MS.gene41737.t1 |
chr7.2 | exon | 22052291 | 22052849 | 22052291 | ID=MS.gene41737.t1.exon2;Parent=MS.gene41737.t1 |
chr7.2 | CDS | 22052291 | 22052849 | 22052291 | ID=cds.MS.gene41737.t1;Parent=MS.gene41737.t1 |
chr7.2 | exon | 22053098 | 22053301 | 22053098 | ID=MS.gene41737.t1.exon3;Parent=MS.gene41737.t1 |
chr7.2 | CDS | 22053098 | 22053301 | 22053098 | ID=cds.MS.gene41737.t1;Parent=MS.gene41737.t1 |
chr7.2 | exon | 22053990 | 22054094 | 22053990 | ID=MS.gene41737.t1.exon4;Parent=MS.gene41737.t1 |
chr7.2 | CDS | 22053990 | 22054094 | 22053990 | ID=cds.MS.gene41737.t1;Parent=MS.gene41737.t1 |
chr7.2 | exon | 22054525 | 22054590 | 22054525 | ID=MS.gene41737.t1.exon5;Parent=MS.gene41737.t1 |
chr7.2 | CDS | 22054525 | 22054590 | 22054525 | ID=cds.MS.gene41737.t1;Parent=MS.gene41737.t1 |
chr7.2 | exon | 22054710 | 22054874 | 22054710 | ID=MS.gene41737.t1.exon6;Parent=MS.gene41737.t1 |
chr7.2 | CDS | 22054710 | 22054874 | 22054710 | ID=cds.MS.gene41737.t1;Parent=MS.gene41737.t1 |
chr7.2 | exon | 22055031 | 22055105 | 22055031 | ID=MS.gene41737.t1.exon7;Parent=MS.gene41737.t1 |
chr7.2 | CDS | 22055031 | 22055105 | 22055031 | ID=cds.MS.gene41737.t1;Parent=MS.gene41737.t1 |
chr7.2 | exon | 22055235 | 22055386 | 22055235 | ID=MS.gene41737.t1.exon8;Parent=MS.gene41737.t1 |
chr7.2 | CDS | 22055235 | 22055386 | 22055235 | ID=cds.MS.gene41737.t1;Parent=MS.gene41737.t1 |
chr7.2 | exon | 22056322 | 22056457 | 22056322 | ID=MS.gene41737.t1.exon9;Parent=MS.gene41737.t1 |
chr7.2 | CDS | 22056322 | 22056457 | 22056322 | ID=cds.MS.gene41737.t1;Parent=MS.gene41737.t1 |
chr7.2 | exon | 22056538 | 22056607 | 22056538 | ID=MS.gene41737.t1.exon10;Parent=MS.gene41737.t1 |
chr7.2 | CDS | 22056538 | 22056607 | 22056538 | ID=cds.MS.gene41737.t1;Parent=MS.gene41737.t1 |
chr7.2 | exon | 22056703 | 22056830 | 22056703 | ID=MS.gene41737.t1.exon11;Parent=MS.gene41737.t1 |
chr7.2 | CDS | 22056703 | 22056830 | 22056703 | ID=cds.MS.gene41737.t1;Parent=MS.gene41737.t1 |
chr7.2 | exon | 22056914 | 22056970 | 22056914 | ID=MS.gene41737.t1.exon12;Parent=MS.gene41737.t1 |
chr7.2 | CDS | 22056914 | 22056970 | 22056914 | ID=cds.MS.gene41737.t1;Parent=MS.gene41737.t1 |
chr7.2 | exon | 22057758 | 22057943 | 22057758 | ID=MS.gene41737.t1.exon13;Parent=MS.gene41737.t1 |
chr7.2 | CDS | 22057758 | 22057943 | 22057758 | ID=cds.MS.gene41737.t1;Parent=MS.gene41737.t1 |
chr7.2 | exon | 22058042 | 22058134 | 22058042 | ID=MS.gene41737.t1.exon14;Parent=MS.gene41737.t1 |
chr7.2 | CDS | 22058042 | 22058134 | 22058042 | ID=cds.MS.gene41737.t1;Parent=MS.gene41737.t1 |
chr7.2 | exon | 22058726 | 22058811 | 22058726 | ID=MS.gene41737.t1.exon15;Parent=MS.gene41737.t1 |
chr7.2 | CDS | 22058726 | 22058811 | 22058726 | ID=cds.MS.gene41737.t1;Parent=MS.gene41737.t1 |
chr7.2 | exon | 22058956 | 22059022 | 22058956 | ID=MS.gene41737.t1.exon16;Parent=MS.gene41737.t1 |
chr7.2 | CDS | 22058956 | 22059022 | 22058956 | ID=cds.MS.gene41737.t1;Parent=MS.gene41737.t1 |
chr7.2 | exon | 22059127 | 22059193 | 22059127 | ID=MS.gene41737.t1.exon17;Parent=MS.gene41737.t1 |
chr7.2 | CDS | 22059127 | 22059193 | 22059127 | ID=cds.MS.gene41737.t1;Parent=MS.gene41737.t1 |
chr7.2 | exon | 22059397 | 22059533 | 22059397 | ID=MS.gene41737.t1.exon18;Parent=MS.gene41737.t1 |
chr7.2 | CDS | 22059397 | 22059533 | 22059397 | ID=cds.MS.gene41737.t1;Parent=MS.gene41737.t1 |
chr7.2 | exon | 22060397 | 22060488 | 22060397 | ID=MS.gene41737.t1.exon19;Parent=MS.gene41737.t1 |
chr7.2 | CDS | 22060397 | 22060488 | 22060397 | ID=cds.MS.gene41737.t1;Parent=MS.gene41737.t1 |
chr7.2 | exon | 22060620 | 22060686 | 22060620 | ID=MS.gene41737.t1.exon20;Parent=MS.gene41737.t1 |
chr7.2 | CDS | 22060620 | 22060686 | 22060620 | ID=cds.MS.gene41737.t1;Parent=MS.gene41737.t1 |
chr7.2 | exon | 22060793 | 22060957 | 22060793 | ID=MS.gene41737.t1.exon21;Parent=MS.gene41737.t1 |
chr7.2 | CDS | 22060793 | 22060957 | 22060793 | ID=cds.MS.gene41737.t1;Parent=MS.gene41737.t1 |
Gene Sequence |
Protein sequence |