Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41810.t1 | XP_003624725.3 | 85.9 | 426 | 58 | 1 | 1 | 426 | 1 | 424 | 7.80E-208 | 733 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41810.t1 | Q93ZL5 | 35.6 | 340 | 167 | 10 | 84 | 406 | 117 | 421 | 4.7e-36 | 153.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41810.t1 | A0A396H9C4 | 85.9 | 426 | 58 | 1 | 1 | 426 | 1 | 424 | 5.6e-208 | 733.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene41810.t1 | TF | C2C2-Dof |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene055919 | MS.gene41810 | 0.968395 | 1.29E-128 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41810.t1 | MTR_7g086780 | 95.991 | 424 | 15 | 1 | 3 | 426 | 1 | 422 | 0.0 | 842 |
MS.gene41810.t1 | MTR_6g027460 | 50.267 | 374 | 139 | 9 | 8 | 350 | 10 | 367 | 9.47e-106 | 317 |
MS.gene41810.t1 | MTR_6g027450 | 47.522 | 343 | 141 | 9 | 8 | 335 | 10 | 328 | 4.98e-93 | 283 |
MS.gene41810.t1 | MTR_6g012450 | 34.800 | 500 | 224 | 18 | 3 | 425 | 1 | 475 | 1.45e-62 | 210 |
MS.gene41810.t1 | MTR_8g044220 | 32.558 | 473 | 227 | 14 | 5 | 426 | 8 | 439 | 8.46e-54 | 185 |
MS.gene41810.t1 | MTR_7g010950 | 35.811 | 444 | 204 | 15 | 38 | 425 | 67 | 485 | 1.82e-53 | 186 |
MS.gene41810.t1 | MTR_4g082060 | 32.121 | 495 | 231 | 17 | 3 | 424 | 1 | 463 | 5.64e-53 | 184 |
MS.gene41810.t1 | MTR_3g435480 | 35.562 | 329 | 168 | 6 | 83 | 392 | 116 | 419 | 1.22e-50 | 177 |
MS.gene41810.t1 | MTR_5g041380 | 31.884 | 345 | 126 | 15 | 97 | 426 | 121 | 371 | 1.58e-32 | 126 |
MS.gene41810.t1 | MTR_2g016030 | 56.000 | 100 | 37 | 1 | 97 | 196 | 41 | 133 | 5.53e-32 | 119 |
MS.gene41810.t1 | MTR_5g041420 | 65.116 | 86 | 24 | 1 | 86 | 165 | 121 | 206 | 1.33e-31 | 123 |
MS.gene41810.t1 | MTR_5g041400 | 30.117 | 342 | 136 | 11 | 97 | 426 | 113 | 363 | 1.41e-31 | 124 |
MS.gene41810.t1 | MTR_5g041530 | 69.014 | 71 | 22 | 0 | 86 | 156 | 123 | 193 | 3.63e-28 | 114 |
MS.gene41810.t1 | MTR_8g027295 | 44.444 | 117 | 60 | 3 | 98 | 213 | 19 | 131 | 9.52e-25 | 103 |
MS.gene41810.t1 | MTR_8g068210 | 51.807 | 83 | 39 | 1 | 77 | 158 | 5 | 87 | 9.55e-25 | 104 |
MS.gene41810.t1 | MTR_3g091820 | 55.556 | 81 | 30 | 1 | 77 | 157 | 23 | 97 | 1.26e-24 | 103 |
MS.gene41810.t1 | MTR_8g479350 | 57.534 | 73 | 31 | 0 | 103 | 175 | 68 | 140 | 2.04e-24 | 103 |
MS.gene41810.t1 | MTR_4g022370 | 65.517 | 58 | 20 | 0 | 99 | 156 | 78 | 135 | 7.16e-24 | 102 |
MS.gene41810.t1 | MTR_8g079060 | 38.462 | 130 | 55 | 3 | 58 | 187 | 3 | 107 | 7.55e-24 | 99.4 |
MS.gene41810.t1 | MTR_2g059540 | 73.469 | 49 | 13 | 0 | 103 | 151 | 31 | 79 | 8.23e-24 | 99.0 |
MS.gene41810.t1 | MTR_2g093220 | 66.102 | 59 | 20 | 0 | 98 | 156 | 35 | 93 | 1.44e-23 | 100 |
MS.gene41810.t1 | MTR_2g096740 | 56.000 | 75 | 33 | 0 | 82 | 156 | 56 | 130 | 1.90e-23 | 100 |
MS.gene41810.t1 | MTR_2g096740 | 56.000 | 75 | 33 | 0 | 82 | 156 | 41 | 115 | 2.01e-23 | 99.8 |
MS.gene41810.t1 | MTR_4g063780 | 37.903 | 124 | 74 | 2 | 90 | 211 | 60 | 182 | 3.50e-23 | 100 |
MS.gene41810.t1 | MTR_4g088580 | 70.909 | 55 | 16 | 0 | 104 | 158 | 56 | 110 | 4.48e-23 | 100 |
MS.gene41810.t1 | MTR_8g015840 | 69.231 | 52 | 16 | 0 | 103 | 154 | 20 | 71 | 6.15e-23 | 96.7 |
MS.gene41810.t1 | MTR_4g109980 | 67.925 | 53 | 17 | 0 | 101 | 153 | 38 | 90 | 8.62e-23 | 98.6 |
MS.gene41810.t1 | MTR_4g461080 | 62.121 | 66 | 24 | 1 | 91 | 155 | 16 | 81 | 1.85e-22 | 96.7 |
MS.gene41810.t1 | MTR_1g077600 | 51.899 | 79 | 33 | 1 | 82 | 155 | 17 | 95 | 2.68e-22 | 96.7 |
MS.gene41810.t1 | MTR_1g077600 | 51.899 | 79 | 33 | 1 | 82 | 155 | 17 | 95 | 2.87e-22 | 96.3 |
MS.gene41810.t1 | MTR_2g014060 | 59.375 | 64 | 26 | 0 | 91 | 154 | 13 | 76 | 3.13e-22 | 97.4 |
MS.gene41810.t1 | MTR_7g059400 | 38.760 | 129 | 66 | 2 | 91 | 217 | 62 | 179 | 4.24e-22 | 97.1 |
MS.gene41810.t1 | MTR_5g031440 | 65.455 | 55 | 19 | 0 | 99 | 153 | 39 | 93 | 2.30e-21 | 94.7 |
MS.gene41810.t1 | MTR_7g024670 | 69.231 | 52 | 16 | 0 | 104 | 155 | 78 | 129 | 2.51e-21 | 95.1 |
MS.gene41810.t1 | MTR_2g013370 | 67.857 | 56 | 17 | 1 | 103 | 158 | 46 | 100 | 2.86e-21 | 93.6 |
MS.gene41810.t1 | MTR_4g089095 | 66.071 | 56 | 18 | 1 | 103 | 158 | 50 | 104 | 3.78e-21 | 93.6 |
MS.gene41810.t1 | MTR_4g089095 | 66.071 | 56 | 18 | 1 | 103 | 158 | 16 | 70 | 4.78e-21 | 92.4 |
MS.gene41810.t1 | MTR_3g090430 | 67.308 | 52 | 17 | 0 | 105 | 156 | 53 | 104 | 5.09e-21 | 94.0 |
MS.gene41810.t1 | MTR_2g014170 | 69.388 | 49 | 15 | 0 | 103 | 151 | 45 | 93 | 7.61e-21 | 92.8 |
MS.gene41810.t1 | MTR_1g056810 | 67.308 | 52 | 17 | 0 | 105 | 156 | 14 | 65 | 9.28e-21 | 92.0 |
MS.gene41810.t1 | MTR_3g077750 | 58.065 | 62 | 25 | 1 | 93 | 153 | 50 | 111 | 2.81e-20 | 91.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41810.t1 | AT5G39660 | 37.097 | 372 | 176 | 15 | 40 | 393 | 77 | 408 | 1.71e-51 | 180 |
MS.gene41810.t1 | AT5G39660 | 37.097 | 372 | 176 | 15 | 40 | 393 | 77 | 408 | 1.71e-51 | 180 |
MS.gene41810.t1 | AT5G39660 | 37.097 | 372 | 176 | 15 | 40 | 393 | 77 | 408 | 1.71e-51 | 180 |
MS.gene41810.t1 | AT3G47500 | 32.165 | 485 | 230 | 17 | 3 | 426 | 2 | 448 | 7.79e-50 | 175 |
MS.gene41810.t1 | AT5G62430 | 36.462 | 277 | 80 | 8 | 3 | 277 | 1 | 183 | 9.76e-38 | 139 |
MS.gene41810.t1 | AT1G26790 | 45.238 | 168 | 85 | 4 | 8 | 169 | 11 | 177 | 5.83e-34 | 130 |
MS.gene41810.t1 | AT1G29160 | 81.667 | 60 | 11 | 0 | 97 | 156 | 56 | 115 | 8.15e-33 | 122 |
MS.gene41810.t1 | AT2G34140 | 64.198 | 81 | 29 | 0 | 97 | 177 | 52 | 132 | 1.46e-32 | 121 |
MS.gene41810.t1 | AT1G69570 | 65.823 | 79 | 27 | 0 | 91 | 169 | 120 | 198 | 4.09e-32 | 126 |
MS.gene41810.t1 | AT3G55370 | 57.143 | 70 | 30 | 0 | 99 | 168 | 72 | 141 | 8.63e-25 | 104 |
MS.gene41810.t1 | AT3G55370 | 57.143 | 70 | 30 | 0 | 99 | 168 | 72 | 141 | 1.06e-24 | 104 |
MS.gene41810.t1 | AT3G55370 | 57.143 | 70 | 30 | 0 | 99 | 168 | 117 | 186 | 1.66e-24 | 104 |
MS.gene41810.t1 | AT5G60850 | 54.762 | 84 | 32 | 2 | 103 | 186 | 51 | 128 | 2.57e-24 | 102 |
MS.gene41810.t1 | AT5G60200 | 56.338 | 71 | 31 | 0 | 99 | 169 | 51 | 121 | 4.29e-24 | 100 |
MS.gene41810.t1 | AT1G51700 | 69.231 | 52 | 16 | 0 | 103 | 154 | 33 | 84 | 5.13e-24 | 99.0 |
MS.gene41810.t1 | AT4G24060 | 44.444 | 117 | 60 | 2 | 100 | 214 | 50 | 163 | 1.16e-23 | 101 |
MS.gene41810.t1 | AT3G61850 | 64.407 | 59 | 21 | 0 | 98 | 156 | 57 | 115 | 1.56e-23 | 100 |
MS.gene41810.t1 | AT3G61850 | 64.407 | 59 | 21 | 0 | 98 | 156 | 57 | 115 | 1.56e-23 | 100 |
MS.gene41810.t1 | AT3G61850 | 64.407 | 59 | 21 | 0 | 98 | 156 | 69 | 127 | 2.15e-23 | 99.8 |
MS.gene41810.t1 | AT3G61850 | 64.407 | 59 | 21 | 0 | 98 | 156 | 57 | 115 | 2.47e-23 | 100 |
MS.gene41810.t1 | AT2G28810 | 66.071 | 56 | 19 | 0 | 99 | 154 | 73 | 128 | 2.74e-23 | 100 |
MS.gene41810.t1 | AT3G61850 | 64.407 | 59 | 21 | 0 | 98 | 156 | 69 | 127 | 3.41e-23 | 99.8 |
MS.gene41810.t1 | AT3G21270 | 69.811 | 53 | 16 | 0 | 103 | 155 | 29 | 81 | 3.54e-23 | 97.1 |
MS.gene41810.t1 | AT2G28810 | 66.071 | 56 | 19 | 0 | 99 | 154 | 90 | 145 | 4.53e-23 | 99.8 |
MS.gene41810.t1 | AT3G45610 | 52.857 | 70 | 33 | 0 | 99 | 168 | 36 | 105 | 5.62e-23 | 97.4 |
MS.gene41810.t1 | AT2G37590 | 63.793 | 58 | 21 | 0 | 99 | 156 | 85 | 142 | 5.62e-23 | 99.4 |
MS.gene41810.t1 | AT1G07640 | 69.091 | 55 | 16 | 1 | 103 | 156 | 21 | 75 | 1.11e-22 | 97.4 |
MS.gene41810.t1 | AT1G07640 | 69.091 | 55 | 16 | 1 | 103 | 156 | 77 | 131 | 1.64e-22 | 98.2 |
MS.gene41810.t1 | AT1G28310 | 68.519 | 54 | 17 | 0 | 103 | 156 | 27 | 80 | 2.06e-22 | 97.4 |
MS.gene41810.t1 | AT4G00940 | 56.944 | 72 | 27 | 1 | 91 | 158 | 52 | 123 | 2.12e-22 | 97.1 |
MS.gene41810.t1 | AT4G00940 | 56.944 | 72 | 27 | 1 | 91 | 158 | 52 | 123 | 2.12e-22 | 97.1 |
MS.gene41810.t1 | AT4G00940 | 56.944 | 72 | 27 | 1 | 91 | 158 | 52 | 123 | 2.12e-22 | 97.1 |
MS.gene41810.t1 | AT5G65590 | 70.370 | 54 | 16 | 0 | 103 | 156 | 41 | 94 | 2.29e-22 | 97.4 |
MS.gene41810.t1 | AT1G07640 | 69.091 | 55 | 16 | 1 | 103 | 156 | 85 | 139 | 2.48e-22 | 97.8 |
MS.gene41810.t1 | AT1G28310 | 68.519 | 54 | 17 | 0 | 103 | 156 | 51 | 104 | 3.14e-22 | 97.4 |
MS.gene41810.t1 | AT5G02460 | 44.898 | 98 | 53 | 1 | 99 | 195 | 91 | 188 | 3.67e-22 | 98.2 |
MS.gene41810.t1 | AT1G64620 | 65.385 | 52 | 18 | 0 | 100 | 151 | 46 | 97 | 5.83e-22 | 97.1 |
MS.gene41810.t1 | AT3G50410 | 70.588 | 51 | 15 | 0 | 105 | 155 | 32 | 82 | 5.91e-22 | 94.7 |
MS.gene41810.t1 | AT5G66940 | 50.000 | 80 | 33 | 1 | 90 | 169 | 26 | 98 | 7.58e-22 | 94.0 |
MS.gene41810.t1 | AT4G38000 | 66.071 | 56 | 18 | 1 | 102 | 156 | 40 | 95 | 8.34e-22 | 94.4 |
MS.gene41810.t1 | AT2G28510 | 66.071 | 56 | 19 | 0 | 105 | 160 | 50 | 105 | 1.43e-21 | 94.7 |
MS.gene41810.t1 | AT4G21050 | 40.800 | 125 | 59 | 3 | 76 | 198 | 4 | 115 | 2.23e-21 | 92.0 |
MS.gene41810.t1 | AT2G46590 | 62.264 | 53 | 20 | 0 | 98 | 150 | 63 | 115 | 1.16e-20 | 93.2 |
MS.gene41810.t1 | AT3G52440 | 65.385 | 52 | 18 | 0 | 105 | 156 | 27 | 78 | 1.27e-20 | 90.9 |
MS.gene41810.t1 | AT3G52440 | 65.385 | 52 | 18 | 0 | 105 | 156 | 46 | 97 | 1.49e-20 | 91.3 |
MS.gene41810.t1 | AT2G46590 | 62.264 | 53 | 20 | 0 | 98 | 150 | 75 | 127 | 1.57e-20 | 92.8 |
MS.gene41810.t1 | AT1G21340 | 66.000 | 50 | 17 | 0 | 105 | 154 | 40 | 89 | 3.35e-20 | 90.1 |
MS.gene41810.t1 | AT1G47655 | 70.213 | 47 | 14 | 0 | 105 | 151 | 31 | 77 | 3.46e-20 | 89.0 |
MS.gene41810.t1 | AT5G62940 | 57.812 | 64 | 26 | 1 | 91 | 153 | 60 | 123 | 8.61e-20 | 90.9 |
MS.gene41810.t1 | AT4G21040 | 63.462 | 52 | 19 | 0 | 105 | 156 | 27 | 78 | 6.19e-18 | 83.2 |
MS.gene41810.t1 | AT4G21080 | 57.895 | 57 | 24 | 0 | 105 | 161 | 27 | 83 | 2.44e-17 | 81.6 |
MS.gene41810.t1 | AT4G21030 | 59.091 | 44 | 18 | 0 | 105 | 148 | 23 | 66 | 2.64e-11 | 63.2 |
Find 119 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCTTCTCCATTAGGCTTCT+TGG | 0.165813 | 7.4:+20891878 | None:intergenic |
TTTGGGTGGCTCTCAGATTT+TGG | 0.205376 | 7.4:-20891844 | MS.gene41810:CDS |
GATCATGGTATTATGCTATT+TGG | 0.221788 | 7.4:-20894067 | MS.gene41810:CDS |
AACGAGACTGTATTGAAATT+TGG | 0.235896 | 7.4:-20892476 | MS.gene41810:CDS |
TGTCCAATTCCGGCCAATTC+TGG | 0.261036 | 7.4:-20894022 | MS.gene41810:CDS |
TACTTCATTTCCTTGATTGC+CGG | 0.302888 | 7.4:+20892316 | None:intergenic |
AAAATTATTATATGCTTTCC+TGG | 0.315121 | 7.4:+20891784 | None:intergenic |
TATCTCTATTGTGCTTTCCT+AGG | 0.318213 | 7.4:+20892012 | None:intergenic |
GTGGGCTTGGAATTTACTAT+TGG | 0.321756 | 7.4:+20892830 | None:intergenic |
GGTCCAGAATTGGCCGGAAT+TGG | 0.321957 | 7.4:+20894019 | None:intergenic |
CGTGTTATCTTCGGTGGGCT+TGG | 0.325634 | 7.4:+20892817 | None:intergenic |
GCTATTTGGTTGGAAGATTC+CGG | 0.345460 | 7.4:-20894053 | MS.gene41810:CDS |
AGAAGGAAAAGACGGTGTTT+TGG | 0.372057 | 7.4:-20891862 | MS.gene41810:CDS |
GATTCGTAAAGAGGGGTATC+AGG | 0.378052 | 7.4:+20892452 | None:intergenic |
GCAAGAACTGCCAAAGGTAT+TGG | 0.383831 | 7.4:-20892661 | MS.gene41810:CDS |
ACACCTATGTTGGCAATTCC+AGG | 0.386307 | 7.4:-20892158 | MS.gene41810:CDS |
CAGAACACAATGCATCAAAT+TGG | 0.395828 | 7.4:-20892292 | MS.gene41810:CDS |
TTTATCTTGATCCGTATTAC+CGG | 0.399758 | 7.4:+20892790 | None:intergenic |
GGTAGTACCCATGGAGAAAC+AGG | 0.400241 | 7.4:+20892257 | None:intergenic |
TTGGAATAATGTTGCTTCAA+TGG | 0.402306 | 7.4:-20892222 | MS.gene41810:CDS |
TTATTCCAACCTGGATTCAT+TGG | 0.406197 | 7.4:+20892236 | None:intergenic |
AGACAATTCTTCTGATTCAA+TGG | 0.409932 | 7.4:-20892885 | MS.gene41810:CDS |
TTGGCCGGAATTGGACATTC+CGG | 0.413804 | 7.4:+20894028 | None:intergenic |
CACCAGCAGTCCAATACCTT+TGG | 0.414239 | 7.4:+20892651 | None:intergenic |
TCGTGGTTACTATAATTTGC+CGG | 0.419212 | 7.4:+20892564 | None:intergenic |
ACAAGTAACAGTTGCTGCTC+AGG | 0.422483 | 7.4:-20892050 | MS.gene41810:CDS |
ATCTCTATTGTGCTTTCCTA+GGG | 0.423915 | 7.4:+20892013 | None:intergenic |
GGACACTGAACAATCTTGTC+TGG | 0.427093 | 7.4:+20892755 | None:intergenic |
AACAGTTGCTGCTCAGGAAA+TGG | 0.428682 | 7.4:-20892044 | MS.gene41810:CDS |
CTATTGTGCTTTCCTAGGGT+TGG | 0.437965 | 7.4:+20892017 | None:intergenic |
TTAGCTACCAAGAAGCCTAA+TGG | 0.444869 | 7.4:-20891885 | MS.gene41810:CDS |
TAAAACAGACAAGTGTGTTC+CGG | 0.446244 | 7.4:-20891970 | MS.gene41810:CDS |
CAGTCTCGAAAAGTCCTATC+CGG | 0.447133 | 7.4:-20891914 | MS.gene41810:CDS |
ATGTACCATGGGTCCAGAAT+TGG | 0.447645 | 7.4:+20894009 | None:intergenic |
ACCGGTCTCCGTGTTATCTT+CGG | 0.448248 | 7.4:+20892808 | None:intergenic |
TTCCGATAGGTGCTGGGAGG+CGG | 0.451244 | 7.4:-20892613 | MS.gene41810:CDS |
ATGGTATTATGCTATTTGGT+TGG | 0.461686 | 7.4:-20894063 | MS.gene41810:CDS |
TGGTTGGAAGATTCCGGTGC+CGG | 0.462466 | 7.4:-20894047 | MS.gene41810:CDS |
ACAAGAGTCTATACCAGAAA+AGG | 0.468668 | 7.4:-20892855 | MS.gene41810:CDS |
AGAAACGTTCCGATAGGTGC+TGG | 0.471856 | 7.4:-20892620 | MS.gene41810:CDS |
ATGAGAAATGGCTCCTGAGC+TGG | 0.472426 | 7.4:+20891818 | None:intergenic |
TAACACGGAGACCGGTAATA+CGG | 0.475853 | 7.4:-20892801 | MS.gene41810:CDS |
GGTGCCGGAATGTCCAATTC+CGG | 0.477329 | 7.4:-20894032 | MS.gene41810:CDS |
GTGTTATCCTGTTTCTCCAT+GGG | 0.479488 | 7.4:-20892264 | MS.gene41810:CDS |
TACCCCTCTTTACGAATCAA+TGG | 0.484142 | 7.4:-20892447 | MS.gene41810:CDS |
AGGATACTTGCAGCAGTACA+AGG | 0.490268 | 7.4:-20892952 | MS.gene41810:CDS |
GTAACAAACACCGGCAATCA+AGG | 0.493046 | 7.4:-20892326 | MS.gene41810:CDS |
AGTGTTATCCTGTTTCTCCA+TGG | 0.495037 | 7.4:-20892265 | MS.gene41810:CDS |
GGAATTGGACATTCCGGCAC+CGG | 0.499395 | 7.4:+20894034 | None:intergenic |
TGCCAAAGGTATTGGACTGC+TGG | 0.503181 | 7.4:-20892653 | MS.gene41810:CDS |
GTCTCCGTGTTATCTTCGGT+GGG | 0.507024 | 7.4:+20892812 | None:intergenic |
AGAAGAATTGTCTTGTTGCT+CGG | 0.510082 | 7.4:+20892895 | None:intergenic |
AGCACCTAGCCTCTCAATAC+CGG | 0.512664 | 7.4:-20892583 | MS.gene41810:CDS |
CGTGGTTGGAACTCCATTCG+TGG | 0.513560 | 7.4:+20892547 | None:intergenic |
GATTCCATTGATTCGTAAAG+AGG | 0.514441 | 7.4:+20892443 | None:intergenic |
CAATACAGTCTCGTTATCCA+TGG | 0.528405 | 7.4:+20892484 | None:intergenic |
TTCCGCCTCCCAGCACCTAT+CGG | 0.529039 | 7.4:+20892611 | None:intergenic |
GTAGTTTCTAGCCTCGTGGT+TGG | 0.531644 | 7.4:+20892533 | None:intergenic |
TTCTCATGCTCATACAATCC+AGG | 0.534975 | 7.4:-20891802 | MS.gene41810:CDS |
TATAATTTGCCGGTATTGAG+AGG | 0.538214 | 7.4:+20892574 | None:intergenic |
ACCGAAGATAACACGGAGAC+CGG | 0.539518 | 7.4:-20892809 | MS.gene41810:CDS |
GGAATTGCCAACATAGGTGT+TGG | 0.540068 | 7.4:+20892161 | None:intergenic |
GTGTCCGCGATGCAACAGTT+GGG | 0.540349 | 7.4:-20892738 | MS.gene41810:CDS |
GTTGTTGAAATAACAAAACT+TGG | 0.540457 | 7.4:+20892712 | None:intergenic |
ATTCCATTGATTCGTAAAGA+GGG | 0.545028 | 7.4:+20892444 | None:intergenic |
CGATCACCACCACACATCCA+TGG | 0.550071 | 7.4:-20892501 | MS.gene41810:CDS |
GGATTCATTGGTAGTACCCA+TGG | 0.554215 | 7.4:+20892248 | None:intergenic |
GTAGCTAATGTAGCCCGGAT+AGG | 0.554980 | 7.4:+20891900 | None:intergenic |
GGTCTCCGTGTTATCTTCGG+TGG | 0.555105 | 7.4:+20892811 | None:intergenic |
CATGGATGTGTGGTGGTGAT+CGG | 0.559985 | 7.4:+20892502 | None:intergenic |
GGAAATGGCTCACCAACCCT+AGG | 0.561749 | 7.4:-20892029 | MS.gene41810:CDS |
TCTGAGACTGAGAAGGATCA+TGG | 0.563095 | 7.4:-20894082 | MS.gene41810:CDS |
CAGTTCTTGCAGAAATGTCG+AGG | 0.563164 | 7.4:+20892674 | None:intergenic |
CGACTTCGGCATCCATGCAA+TGG | 0.568776 | 7.4:-20892187 | MS.gene41810:CDS |
TCTTGGTAGCTAATGTAGCC+CGG | 0.573000 | 7.4:+20891895 | None:intergenic |
GATTGTATGAGCATGAGAAA+TGG | 0.574252 | 7.4:+20891806 | None:intergenic |
AACTTGTAGCAGCATCACAT+TGG | 0.575411 | 7.4:-20892109 | MS.gene41810:CDS |
AGTGTCCGCGATGCAACAGT+TGG | 0.576096 | 7.4:-20892739 | MS.gene41810:CDS |
GGCAGCAGTTCATCCGACTT+CGG | 0.576744 | 7.4:-20892201 | MS.gene41810:CDS |
ACCAAGAAGCCTAATGGAGA+AGG | 0.578795 | 7.4:-20891879 | MS.gene41810:CDS |
CAAATTATAGTAACCACGAA+TGG | 0.580675 | 7.4:-20892560 | MS.gene41810:CDS |
TCCGGCCAATTCTGGACCCA+TGG | 0.581876 | 7.4:-20894014 | MS.gene41810:intron |
GCAGCAACTGTTACTTGTAG+AGG | 0.584099 | 7.4:+20892055 | None:intergenic |
TGGGTACTACCAATGAATCC+AGG | 0.586175 | 7.4:-20892245 | MS.gene41810:CDS |
CATTGCATGGATGCCGAAGT+CGG | 0.595329 | 7.4:+20892188 | None:intergenic |
AGTCTCGAAAAGTCCTATCC+GGG | 0.597281 | 7.4:-20891913 | MS.gene41810:CDS |
ATTCCTGGAATTGCCAACAT+AGG | 0.597632 | 7.4:+20892155 | None:intergenic |
AGAGAGGAACCGTCCTTGTG+TGG | 0.598119 | 7.4:-20892356 | MS.gene41810:CDS |
GAAACGTTCCGATAGGTGCT+GGG | 0.598531 | 7.4:-20892619 | MS.gene41810:CDS |
TACTACCAATGAATCCAGGT+TGG | 0.601762 | 7.4:-20892241 | MS.gene41810:CDS |
CAGTTCTGTGCAACATAGAG+AGG | 0.603480 | 7.4:-20892372 | MS.gene41810:CDS |
GGCGGCGAGAGGCAAAGTGA+TGG | 0.613227 | 7.4:+20892080 | None:intergenic |
GATGCTGCTACAAGTTGTAA+AGG | 0.617256 | 7.4:+20892116 | None:intergenic |
CAGTACAAGGAAAACAGAAG+TGG | 0.617838 | 7.4:-20892939 | MS.gene41810:CDS |
TTCCATTGATTCGTAAAGAG+GGG | 0.618009 | 7.4:+20892445 | None:intergenic |
GAACATGTCTGAGACTGAGA+AGG | 0.619721 | 7.4:-20894089 | MS.gene41810:CDS |
GAAGCAACATTATTCCAACC+TGG | 0.621410 | 7.4:+20892227 | None:intergenic |
CAAAGGTATTGGACTGCTGG+TGG | 0.623552 | 7.4:-20892650 | MS.gene41810:CDS |
CAAGCCCACCGAAGATAACA+CGG | 0.626181 | 7.4:-20892816 | MS.gene41810:CDS |
TTGTAGAGGAAGGCGGCGAG+AGG | 0.626239 | 7.4:+20892069 | None:intergenic |
TTTGCCGGTATTGAGAGGCT+AGG | 0.626885 | 7.4:+20892579 | None:intergenic |
ATGGTGTCCAACACCTATGT+TGG | 0.630522 | 7.4:-20892168 | MS.gene41810:CDS |
CCTAATGGAGAAGGAAAAGA+CGG | 0.631268 | 7.4:-20891870 | MS.gene41810:CDS |
CAACTGTTACTTGTAGAGGA+AGG | 0.635921 | 7.4:+20892059 | None:intergenic |
GTTTGTAGTTTCTAGCCTCG+TGG | 0.637790 | 7.4:+20892529 | None:intergenic |
AGGTGTTGGACACCATTGCA+TGG | 0.641634 | 7.4:+20892175 | None:intergenic |
ACGATGAGAAACGTTCCGAT+AGG | 0.645907 | 7.4:-20892626 | MS.gene41810:CDS |
GGATCTTCTGTAACAAACAC+CGG | 0.647048 | 7.4:-20892335 | MS.gene41810:CDS |
CGTTATCCATGGATGTGTGG+TGG | 0.660626 | 7.4:+20892495 | None:intergenic |
ATTTCTGCAAGAACTGCCAA+AGG | 0.665461 | 7.4:-20892667 | MS.gene41810:CDS |
ACAGAAGATCCACACAAGGA+CGG | 0.669016 | 7.4:+20892347 | None:intergenic |
ACCATGGGTCCAGAATTGGC+CGG | 0.674302 | 7.4:+20894013 | None:intergenic |
GTAGCAGCATCACATTGGAG+TGG | 0.674545 | 7.4:-20892104 | MS.gene41810:CDS |
CTGTTACTTGTAGAGGAAGG+CGG | 0.676133 | 7.4:+20892062 | None:intergenic |
TCTCGTTATCCATGGATGTG+TGG | 0.680622 | 7.4:+20892492 | None:intergenic |
CGAATGGAGTTCCAACCACG+AGG | 0.695228 | 7.4:-20892544 | MS.gene41810:CDS |
GTGTCCCAACTGTTGCATCG+CGG | 0.715720 | 7.4:+20892734 | None:intergenic |
TGTTACAGAAGATCCACACA+AGG | 0.727736 | 7.4:+20892343 | None:intergenic |
ACGTTCCGATAGGTGCTGGG+AGG | 0.730741 | 7.4:-20892616 | MS.gene41810:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATTGATTTTTGTAATTCT+TGG | - | chr7.4:20892464-20892483 | MS.gene41810:CDS | 15.0% |
!!! | TAATTTGTGGTTTAAATTTT+AGG | - | chr7.4:20892910-20892929 | MS.gene41810:CDS | 15.0% |
!!! | TATTTTGTTTGTTTTCTTAT+GGG | - | chr7.4:20892023-20892042 | MS.gene41810:CDS | 15.0% |
!!! | TTATTTTGTTTGTTTTCTTA+TGG | - | chr7.4:20892022-20892041 | MS.gene41810:CDS | 15.0% |
!! | TATAGTTATATATGTACCAT+GGG | + | chr7.4:20891887-20891906 | None:intergenic | 20.0% |
!! | TTATAGTTATATATGTACCA+TGG | + | chr7.4:20891888-20891907 | None:intergenic | 20.0% |
!!! | ATTTTGTTTGTTTTCTTATG+GGG | - | chr7.4:20892024-20892043 | MS.gene41810:CDS | 20.0% |
!!! | TCTTTATGTTTTAATTGTGA+TGG | - | chr7.4:20892388-20892407 | MS.gene41810:CDS | 20.0% |
!!! | TTTTTTATGATGATTTCTCT+TGG | - | chr7.4:20892565-20892584 | MS.gene41810:CDS | 20.0% |
! | ATTCATCAATCATCAATCAT+TGG | + | chr7.4:20892338-20892357 | None:intergenic | 25.0% |
! | CAATATAATGTAAACAAAGG+CGG | - | chr7.4:20892290-20892309 | MS.gene41810:CDS | 25.0% |
! | CATTTGTACACTTAATTTCT+AGG | - | chr7.4:20892538-20892557 | MS.gene41810:CDS | 25.0% |
! | CTTAGTTTATCACTAATTTG+TGG | - | chr7.4:20892897-20892916 | MS.gene41810:CDS | 25.0% |
! | GACCAATATAATGTAAACAA+AGG | - | chr7.4:20892287-20892306 | MS.gene41810:CDS | 25.0% |
! | GTTGTTGAAATAACAAAACT+TGG | + | chr7.4:20893173-20893192 | None:intergenic | 25.0% |
! | TATTATGCTTGCAAAATTTG+AGG | - | chr7.4:20892750-20892769 | MS.gene41810:CDS | 25.0% |
! | TGTATGTTGCATATGAAAAT+GGG | - | chr7.4:20891978-20891997 | MS.gene41810:CDS | 25.0% |
! | TTGTATGTTGCATATGAAAA+TGG | - | chr7.4:20891977-20891996 | MS.gene41810:CDS | 25.0% |
!!! | AGGATAATTTTGTTTCTTAG+TGG | - | chr7.4:20892110-20892129 | MS.gene41810:CDS | 25.0% |
!!! | AGTTGTAAAGGTATATTTTG+TGG | + | chr7.4:20893757-20893776 | None:intergenic | 25.0% |
!!! | ATAATTTTGTTTCTTAGTGG+AGG | - | chr7.4:20892113-20892132 | MS.gene41810:CDS | 25.0% |
AACGAGACTGTATTGAAATT+TGG | - | chr7.4:20893406-20893425 | MS.gene41810:intron | 30.0% | |
ACAACAAATTCTCACATAAC+AGG | + | chr7.4:20892798-20892817 | None:intergenic | 30.0% | |
AGACAATTCTTCTGATTCAA+TGG | - | chr7.4:20892997-20893016 | MS.gene41810:intron | 30.0% | |
CAAATTATAGTAACCACGAA+TGG | - | chr7.4:20893322-20893341 | MS.gene41810:intron | 30.0% | |
GACTAAAGATTGTTATAGTC+CGG | + | chr7.4:20892213-20892232 | None:intergenic | 30.0% | |
GATCATGGTATTATGCTATT+TGG | - | chr7.4:20891815-20891834 | MS.gene41810:CDS | 30.0% | |
TAGACAGAGAAATGAAATCA+AGG | + | chr7.4:20892846-20892865 | None:intergenic | 30.0% | |
TCATTTCTCTGTCTATTCTT+AGG | - | chr7.4:20892851-20892870 | MS.gene41810:CDS | 30.0% | |
TCCAATAGAAGTAAAAGATC+AGG | - | chr7.4:20892709-20892728 | MS.gene41810:CDS | 30.0% | |
TTTATCTTGATCCGTATTAC+CGG | + | chr7.4:20893095-20893114 | None:intergenic | 30.0% | |
! | AGGACACAAGTATAACTTTT+TGG | + | chr7.4:20892778-20892797 | None:intergenic | 30.0% |
! | ATGACTCTAAGAAAATGAAG+AGG | + | chr7.4:20892521-20892540 | None:intergenic | 30.0% |
! | ATGGTATTATGCTATTTGGT+TGG | - | chr7.4:20891819-20891838 | MS.gene41810:CDS | 30.0% |
! | CGCCTTTGTTTACATTATAT+TGG | + | chr7.4:20892292-20892311 | None:intergenic | 30.0% |
! | TCCTGATCTTTTACTTCTAT+TGG | + | chr7.4:20892713-20892732 | None:intergenic | 30.0% |
! | TTGGAATAATGTTGCTTCAA+TGG | - | chr7.4:20893660-20893679 | MS.gene41810:intron | 30.0% |
!! | ATTCCATTGATTCGTAAAGA+GGG | + | chr7.4:20893441-20893460 | None:intergenic | 30.0% |
!! | ATTTTAATGAGCTTGAGGTA+AGG | - | chr7.4:20892156-20892175 | MS.gene41810:CDS | 30.0% |
!! | CAAAATCTTCTGAAGTTTGA+AGG | - | chr7.4:20892090-20892109 | MS.gene41810:CDS | 30.0% |
!! | GATTCATTTTAATGAGCTTG+AGG | - | chr7.4:20892151-20892170 | MS.gene41810:CDS | 30.0% |
!! | GTTCTAATTGTTTTTCGAAC+CGG | + | chr7.4:20893934-20893953 | None:intergenic | 30.0% |
!!! | GTTTTAATTGTGATGGAAGA+TGG | - | chr7.4:20892395-20892414 | MS.gene41810:CDS | 30.0% |
ACAAGAGTCTATACCAGAAA+AGG | - | chr7.4:20893027-20893046 | MS.gene41810:intron | 35.0% | |
ATCTCTATTGTGCTTTCCTA+GGG | + | chr7.4:20893872-20893891 | None:intergenic | 35.0% | |
CAGAACACAATGCATCAAAT+TGG | - | chr7.4:20893590-20893609 | MS.gene41810:intron | 35.0% | |
GAAGAAAGACATAAGCTGAA+AGG | + | chr7.4:20891934-20891953 | None:intergenic | 35.0% | |
GATTGTATGAGCATGAGAAA+TGG | + | chr7.4:20894079-20894098 | None:intergenic | 35.0% | |
TAAAACAGACAAGTGTGTTC+CGG | - | chr7.4:20893912-20893931 | MS.gene41810:intron | 35.0% | |
TACTTCATTTCCTTGATTGC+CGG | + | chr7.4:20893569-20893588 | None:intergenic | 35.0% | |
TAGTAATCCAGAGTTTAGCT+GGG | + | chr7.4:20892251-20892270 | None:intergenic | 35.0% | |
TATCTCTATTGTGCTTTCCT+AGG | + | chr7.4:20893873-20893892 | None:intergenic | 35.0% | |
TGTAAACAAAGGCGGTATTT+AGG | - | chr7.4:20892298-20892317 | MS.gene41810:CDS | 35.0% | |
TGTTGCATATGAAAATGGGT+TGG | - | chr7.4:20891982-20892001 | MS.gene41810:CDS | 35.0% | |
TTATTCCAACCTGGATTCAT+TGG | + | chr7.4:20893649-20893668 | None:intergenic | 35.0% | |
TTGATGTGAACCAAAGGATT+TGG | - | chr7.4:20892488-20892507 | MS.gene41810:CDS | 35.0% | |
! | AAGATCAGGACTAGTGAAAT+AGG | - | chr7.4:20892723-20892742 | MS.gene41810:CDS | 35.0% |
! | AGAAGAATTGTCTTGTTGCT+CGG | + | chr7.4:20892990-20893009 | None:intergenic | 35.0% |
! | ATATTTTGTGGCTGAATTCC+TGG | + | chr7.4:20893745-20893764 | None:intergenic | 35.0% |
! | TATAATTTGCCGGTATTGAG+AGG | + | chr7.4:20893311-20893330 | None:intergenic | 35.0% |
! | TATGGGGTTGTTGAGATTTT+TGG | - | chr7.4:20892040-20892059 | MS.gene41810:CDS | 35.0% |
! | TCGTGGTTACTATAATTTGC+CGG | + | chr7.4:20893321-20893340 | None:intergenic | 35.0% |
!! | GATTCCATTGATTCGTAAAG+AGG | + | chr7.4:20893442-20893461 | None:intergenic | 35.0% |
!! | TTCCATTGATTCGTAAAGAG+GGG | + | chr7.4:20893440-20893459 | None:intergenic | 35.0% |
!!! | AATGGGTTGGACGTAAATTT+TGG | - | chr7.4:20891995-20892014 | MS.gene41810:CDS | 35.0% |
!!! | TTTACTATTGGCTCCTTTTC+TGG | + | chr7.4:20893043-20893062 | None:intergenic | 35.0% |
AACTTGTAGCAGCATCACAT+TGG | - | chr7.4:20893773-20893792 | MS.gene41810:intron | 40.0% | |
ACAAATTGTTCCGTAGAACC+CGG | - | chr7.4:20892179-20892198 | MS.gene41810:CDS | 40.0% | |
AGGATCAAGACCAAATCCTT+TGG | + | chr7.4:20892501-20892520 | None:intergenic | 40.0% | |
ATTCCTGGAATTGCCAACAT+AGG | + | chr7.4:20893730-20893749 | None:intergenic | 40.0% | |
ATTTCTGCAAGAACTGCCAA+AGG | - | chr7.4:20893215-20893234 | MS.gene41810:intron | 40.0% | |
CAATACAGTCTCGTTATCCA+TGG | + | chr7.4:20893401-20893420 | None:intergenic | 40.0% | |
CAGTACAAGGAAAACAGAAG+TGG | - | chr7.4:20892943-20892962 | MS.gene41810:CDS | 40.0% | |
CCTAATGGAGAAGGAAAAGA+CGG | - | chr7.4:20894012-20894031 | MS.gene41810:intron | 40.0% | |
CTAGTAATCCAGAGTTTAGC+TGG | + | chr7.4:20892252-20892271 | None:intergenic | 40.0% | |
CTGGATTACTAGAGAGTAGA+GGG | - | chr7.4:20892260-20892279 | MS.gene41810:CDS | 40.0% | |
CTTGGATTGATGTGAACCAA+AGG | - | chr7.4:20892482-20892501 | MS.gene41810:CDS | 40.0% | |
GAAGCAACATTATTCCAACC+TGG | + | chr7.4:20893658-20893677 | None:intergenic | 40.0% | |
GATGCTGCTACAAGTTGTAA+AGG | + | chr7.4:20893769-20893788 | None:intergenic | 40.0% | |
GCTATTTGGTTGGAAGATTC+CGG | - | chr7.4:20891829-20891848 | MS.gene41810:CDS | 40.0% | |
GGATCTTCTGTAACAAACAC+CGG | - | chr7.4:20893547-20893566 | MS.gene41810:intron | 40.0% | |
GTGGGCTTGGAATTTACTAT+TGG | + | chr7.4:20893055-20893074 | None:intergenic | 40.0% | |
TACCCCTCTTTACGAATCAA+TGG | - | chr7.4:20893435-20893454 | MS.gene41810:intron | 40.0% | |
TACTACCAATGAATCCAGGT+TGG | - | chr7.4:20893641-20893660 | MS.gene41810:intron | 40.0% | |
TCTGGATTACTAGAGAGTAG+AGG | - | chr7.4:20892259-20892278 | MS.gene41810:CDS | 40.0% | |
TGTTACAGAAGATCCACACA+AGG | + | chr7.4:20893542-20893561 | None:intergenic | 40.0% | |
TTAGCTACCAAGAAGCCTAA+TGG | - | chr7.4:20893997-20894016 | MS.gene41810:intron | 40.0% | |
TTATAGTCCGGATTCAAACC+CGG | + | chr7.4:20892201-20892220 | None:intergenic | 40.0% | |
TTCTCATGCTCATACAATCC+AGG | - | chr7.4:20894080-20894099 | MS.gene41810:CDS | 40.0% | |
! | AGAAGGAAAAGACGGTGTTT+TGG | - | chr7.4:20894020-20894039 | MS.gene41810:CDS | 40.0% |
! | AGTGTTATCCTGTTTCTCCA+TGG | - | chr7.4:20893617-20893636 | MS.gene41810:intron | 40.0% |
! | CAACTGTTACTTGTAGAGGA+AGG | + | chr7.4:20893826-20893845 | None:intergenic | 40.0% |
! | GAAGGAAAAGACGGTGTTTT+GGG | - | chr7.4:20894021-20894040 | MS.gene41810:CDS | 40.0% |
! | GTGTTATCCTGTTTCTCCAT+GGG | - | chr7.4:20893618-20893637 | MS.gene41810:intron | 40.0% |
! | TCTGAGATAAGCAGAAGTTG+AGG | - | chr7.4:20892674-20892693 | MS.gene41810:CDS | 40.0% |
! | TTGCATCAGCACTTCTTTTC+TGG | + | chr7.4:20893483-20893502 | None:intergenic | 40.0% |
!!! | GGGTTGTTGAGATTTTTGGT+TGG | - | chr7.4:20892044-20892063 | MS.gene41810:CDS | 40.0% |
AACAGTTGCTGCTCAGGAAA+TGG | - | chr7.4:20893838-20893857 | MS.gene41810:intron | 45.0% | |
ACAAGTAACAGTTGCTGCTC+AGG | - | chr7.4:20893832-20893851 | MS.gene41810:intron | 45.0% | |
ACACCTATGTTGGCAATTCC+AGG | - | chr7.4:20893724-20893743 | MS.gene41810:intron | 45.0% | |
ACAGAAGATCCACACAAGGA+CGG | + | chr7.4:20893538-20893557 | None:intergenic | 45.0% | |
ACCAAGAAGCCTAATGGAGA+AGG | - | chr7.4:20894003-20894022 | MS.gene41810:intron | 45.0% | |
ACGATGAGAAACGTTCCGAT+AGG | - | chr7.4:20893256-20893275 | MS.gene41810:intron | 45.0% | |
AGGATACTTGCAGCAGTACA+AGG | - | chr7.4:20892930-20892949 | MS.gene41810:CDS | 45.0% | |
AGTCTCGAAAAGTCCTATCC+GGG | - | chr7.4:20893969-20893988 | MS.gene41810:intron | 45.0% | |
ATGGTGTCCAACACCTATGT+TGG | - | chr7.4:20893714-20893733 | MS.gene41810:intron | 45.0% | |
ATGTACCATGGGTCCAGAAT+TGG | + | chr7.4:20891876-20891895 | None:intergenic | 45.0% | |
CAAATTGTTCCGTAGAACCC+GGG | - | chr7.4:20892180-20892199 | MS.gene41810:CDS | 45.0% | |
CAGTCTCGAAAAGTCCTATC+CGG | - | chr7.4:20893968-20893987 | MS.gene41810:intron | 45.0% | |
CAGTTCTGTGCAACATAGAG+AGG | - | chr7.4:20893510-20893529 | MS.gene41810:intron | 45.0% | |
CAGTTCTTGCAGAAATGTCG+AGG | + | chr7.4:20893211-20893230 | None:intergenic | 45.0% | |
CTATTGTGCTTTCCTAGGGT+TGG | + | chr7.4:20893868-20893887 | None:intergenic | 45.0% | |
CTTACTTCCCAGCTAAACTC+TGG | - | chr7.4:20892241-20892260 | MS.gene41810:CDS | 45.0% | |
GGAATTGCCAACATAGGTGT+TGG | + | chr7.4:20893724-20893743 | None:intergenic | 45.0% | |
GGACACTGAACAATCTTGTC+TGG | + | chr7.4:20893130-20893149 | None:intergenic | 45.0% | |
GTAACAAACACCGGCAATCA+AGG | - | chr7.4:20893556-20893575 | MS.gene41810:intron | 45.0% | |
TAACACGGAGACCGGTAATA+CGG | - | chr7.4:20893081-20893100 | MS.gene41810:intron | 45.0% | |
TATAGTCCGGATTCAAACCC+GGG | + | chr7.4:20892200-20892219 | None:intergenic | 45.0% | |
TCCTTCTCCATTAGGCTTCT+TGG | + | chr7.4:20894007-20894026 | None:intergenic | 45.0% | |
TCTCGTTATCCATGGATGTG+TGG | + | chr7.4:20893393-20893412 | None:intergenic | 45.0% | |
TGGGTACTACCAATGAATCC+AGG | - | chr7.4:20893637-20893656 | MS.gene41810:intron | 45.0% | |
! | CCGTCTTTTCCTTCTCCATT+AGG | + | chr7.4:20894015-20894034 | None:intergenic | 45.0% |
! | CTGTTACTTGTAGAGGAAGG+CGG | + | chr7.4:20893823-20893842 | None:intergenic | 45.0% |
! | GAACATGTCTGAGACTGAGA+AGG | - | chr7.4:20891793-20891812 | MS.gene41810:CDS | 45.0% |
! | GCAAGAACTGCCAAAGGTAT+TGG | - | chr7.4:20893221-20893240 | MS.gene41810:intron | 45.0% |
! | GCAGCAACTGTTACTTGTAG+AGG | + | chr7.4:20893830-20893849 | None:intergenic | 45.0% |
! | GGATTCATTGGTAGTACCCA+TGG | + | chr7.4:20893637-20893656 | None:intergenic | 45.0% |
! | TCTGAGACTGAGAAGGATCA+TGG | - | chr7.4:20891800-20891819 | MS.gene41810:CDS | 45.0% |
! | TCTTGGTAGCTAATGTAGCC+CGG | + | chr7.4:20893990-20894009 | None:intergenic | 45.0% |
! | TTTGGGTGGCTCTCAGATTT+TGG | - | chr7.4:20894038-20894057 | MS.gene41810:CDS | 45.0% |
!! | GATTCGTAAAGAGGGGTATC+AGG | + | chr7.4:20893433-20893452 | None:intergenic | 45.0% |
!! | GTTTGTAGTTTCTAGCCTCG+TGG | + | chr7.4:20893356-20893375 | None:intergenic | 45.0% |
!!! | TGCTCGGTTTTTTCTGCACA+AGG | + | chr7.4:20892974-20892993 | None:intergenic | 45.0% |
ACCGAAGATAACACGGAGAC+CGG | - | chr7.4:20893073-20893092 | MS.gene41810:intron | 50.0% | |
ACCGGTCTCCGTGTTATCTT+CGG | + | chr7.4:20893077-20893096 | None:intergenic | 50.0% | |
AGAAACGTTCCGATAGGTGC+TGG | - | chr7.4:20893262-20893281 | MS.gene41810:intron | 50.0% | |
AGCACCTAGCCTCTCAATAC+CGG | - | chr7.4:20893299-20893318 | MS.gene41810:intron | 50.0% | |
ATGAGAAATGGCTCCTGAGC+TGG | + | chr7.4:20894067-20894086 | None:intergenic | 50.0% | |
CAAGCCCACCGAAGATAACA+CGG | - | chr7.4:20893066-20893085 | MS.gene41810:intron | 50.0% | |
CACCAGCAGTCCAATACCTT+TGG | + | chr7.4:20893234-20893253 | None:intergenic | 50.0% | |
CATTGCATGGATGCCGAAGT+CGG | + | chr7.4:20893697-20893716 | None:intergenic | 50.0% | |
CGTTATCCATGGATGTGTGG+TGG | + | chr7.4:20893390-20893409 | None:intergenic | 50.0% | |
GAAACGTTCCGATAGGTGCT+GGG | - | chr7.4:20893263-20893282 | MS.gene41810:intron | 50.0% | |
GGATTCAAACCCGGGTTCTA+CGG | + | chr7.4:20892192-20892211 | None:intergenic | 50.0% | |
GGTAGTACCCATGGAGAAAC+AGG | + | chr7.4:20893628-20893647 | None:intergenic | 50.0% | |
GTAGAACCCGGGTTTGAATC+CGG | - | chr7.4:20892191-20892210 | MS.gene41810:CDS | 50.0% | |
GTAGCAGCATCACATTGGAG+TGG | - | chr7.4:20893778-20893797 | MS.gene41810:intron | 50.0% | |
GTAGCTAATGTAGCCCGGAT+AGG | + | chr7.4:20893985-20894004 | None:intergenic | 50.0% | |
GTCTCCGTGTTATCTTCGGT+GGG | + | chr7.4:20893073-20893092 | None:intergenic | 50.0% | |
TGTCCAATTCCGGCCAATTC+TGG | - | chr7.4:20891860-20891879 | MS.gene41810:CDS | 50.0% | |
TTGGCCGGAATTGGACATTC+CGG | + | chr7.4:20891857-20891876 | None:intergenic | 50.0% | |
! | CATGGATGTGTGGTGGTGAT+CGG | + | chr7.4:20893383-20893402 | None:intergenic | 50.0% |
! | TTTGCCGGTATTGAGAGGCT+AGG | + | chr7.4:20893306-20893325 | None:intergenic | 50.0% |
!! | AGGTGTTGGACACCATTGCA+TGG | + | chr7.4:20893710-20893729 | None:intergenic | 50.0% |
!! | CAAAGGTATTGGACTGCTGG+TGG | - | chr7.4:20893232-20893251 | MS.gene41810:intron | 50.0% |
!! | CAGATTTTGGAAGCCAGCTC+AGG | - | chr7.4:20894051-20894070 | MS.gene41810:CDS | 50.0% |
!! | GGAAAAGACGGTGTTTTGGG+TGG | - | chr7.4:20894024-20894043 | MS.gene41810:CDS | 50.0% |
!! | GTAGTTTCTAGCCTCGTGGT+TGG | + | chr7.4:20893352-20893371 | None:intergenic | 50.0% |
!! | TGCCAAAGGTATTGGACTGC+TGG | - | chr7.4:20893229-20893248 | MS.gene41810:intron | 50.0% |
ACCATGGGTCCAGAATTGGC+CGG | + | chr7.4:20891872-20891891 | None:intergenic | 55.0% | |
AGAGAGGAACCGTCCTTGTG+TGG | - | chr7.4:20893526-20893545 | MS.gene41810:intron | 55.0% | |
AGTGTCCGCGATGCAACAGT+TGG | - | chr7.4:20893143-20893162 | MS.gene41810:intron | 55.0% | |
CGAATGGAGTTCCAACCACG+AGG | - | chr7.4:20893338-20893357 | MS.gene41810:intron | 55.0% | |
CGACTTCGGCATCCATGCAA+TGG | - | chr7.4:20893695-20893714 | MS.gene41810:intron | 55.0% | |
CGATCACCACCACACATCCA+TGG | - | chr7.4:20893381-20893400 | MS.gene41810:intron | 55.0% | |
CGTGGTTGGAACTCCATTCG+TGG | + | chr7.4:20893338-20893357 | None:intergenic | 55.0% | |
GGAAATGGCTCACCAACCCT+AGG | - | chr7.4:20893853-20893872 | MS.gene41810:intron | 55.0% | |
GGAATTGGACATTCCGGCAC+CGG | + | chr7.4:20891851-20891870 | None:intergenic | 55.0% | |
GGCAGCAGTTCATCCGACTT+CGG | - | chr7.4:20893681-20893700 | MS.gene41810:intron | 55.0% | |
GGTCCAGAATTGGCCGGAAT+TGG | + | chr7.4:20891866-20891885 | None:intergenic | 55.0% | |
GGTCTCCGTGTTATCTTCGG+TGG | + | chr7.4:20893074-20893093 | None:intergenic | 55.0% | |
GTGTCCCAACTGTTGCATCG+CGG | + | chr7.4:20893151-20893170 | None:intergenic | 55.0% | |
GTGTCCGCGATGCAACAGTT+GGG | - | chr7.4:20893144-20893163 | MS.gene41810:intron | 55.0% | |
TGGTTGGAAGATTCCGGTGC+CGG | - | chr7.4:20891835-20891854 | MS.gene41810:CDS | 55.0% | |
! | CGTGTTATCTTCGGTGGGCT+TGG | + | chr7.4:20893068-20893087 | None:intergenic | 55.0% |
! | GGTGCCGGAATGTCCAATTC+CGG | - | chr7.4:20891850-20891869 | MS.gene41810:CDS | 55.0% |
TCCGGCCAATTCTGGACCCA+TGG | - | chr7.4:20891868-20891887 | MS.gene41810:CDS | 60.0% | |
TTCCGCCTCCCAGCACCTAT+CGG | + | chr7.4:20893274-20893293 | None:intergenic | 60.0% | |
TTGTAGAGGAAGGCGGCGAG+AGG | + | chr7.4:20893816-20893835 | None:intergenic | 60.0% | |
!! | ACGTTCCGATAGGTGCTGGG+AGG | - | chr7.4:20893266-20893285 | MS.gene41810:intron | 60.0% |
!! | TTCCGATAGGTGCTGGGAGG+CGG | - | chr7.4:20893269-20893288 | MS.gene41810:intron | 60.0% |
GGCGGCGAGAGGCAAAGTGA+TGG | + | chr7.4:20893805-20893824 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 20891791 | 20894113 | 20891791 | ID=MS.gene41810 |
chr7.4 | mRNA | 20891791 | 20894113 | 20891791 | ID=MS.gene41810.t1;Parent=MS.gene41810 |
chr7.4 | exon | 20894015 | 20894113 | 20894015 | ID=MS.gene41810.t1.exon1;Parent=MS.gene41810.t1 |
chr7.4 | CDS | 20894015 | 20894113 | 20894015 | ID=cds.MS.gene41810.t1;Parent=MS.gene41810.t1 |
chr7.4 | exon | 20891791 | 20892972 | 20891791 | ID=MS.gene41810.t1.exon2;Parent=MS.gene41810.t1 |
chr7.4 | CDS | 20891791 | 20892972 | 20891791 | ID=cds.MS.gene41810.t1;Parent=MS.gene41810.t1 |
Gene Sequence |
Protein sequence |