Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42077.t1 | XP_003623571.2 | 99.2 | 242 | 2 | 0 | 1 | 242 | 1 | 242 | 6.70E-132 | 479.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42077.t1 | Q61207 | 34.6 | 81 | 45 | 3 | 47 | 121 | 63 | 141 | 7.6e-07 | 55.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42077.t1 | G7KX29 | 99.2 | 242 | 2 | 0 | 1 | 242 | 1 | 242 | 4.9e-132 | 479.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene42077 | MS.gene68947 | PPI |
| MS.gene42077 | MS.gene68850 | PPI |
| MS.gene42077 | MS.gene27206 | PPI |
| MS.gene02356 | MS.gene42077 | PPI |
| MS.gene42077 | MS.gene002990 | PPI |
| MS.gene42077 | MS.gene012660 | PPI |
| MS.gene42077 | MS.gene042166 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42077.t1 | MTR_7g072560 | 99.174 | 242 | 2 | 0 | 1 | 242 | 1 | 242 | 1.39e-177 | 487 |
| MS.gene42077.t1 | MTR_4g029040 | 49.554 | 224 | 101 | 2 | 1 | 224 | 1 | 212 | 1.62e-79 | 238 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42077.t1 | AT3G51730 | 45.500 | 200 | 102 | 2 | 20 | 219 | 20 | 212 | 2.57e-59 | 187 |
| MS.gene42077.t1 | AT5G01800 | 42.857 | 161 | 91 | 1 | 46 | 205 | 38 | 198 | 4.10e-48 | 158 |
Find 37 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAACTGTTTCGTCACTAT+TGG | 0.292619 | 7.2:-31842100 | MS.gene42077:CDS |
| AGGAAATATTAGCAATGTTC+TGG | 0.310964 | 7.2:+31842157 | None:intergenic |
| TGCACTTCAGTGGACAAGTT+TGG | 0.321322 | 7.2:-31841852 | MS.gene42077:CDS |
| CTCTTGTTTATTGTGGTACT+AGG | 0.336340 | 7.2:-31845150 | MS.gene42077:CDS |
| GCTGCAAACTCTGCCTCTTC+TGG | 0.337426 | 7.2:-31845075 | MS.gene42077:intron |
| GCCTGGAGATTTCTGCAATA+AGG | 0.360633 | 7.2:-31842190 | MS.gene42077:CDS |
| GCACTTCAGTGGACAAGTTT+GGG | 0.387009 | 7.2:-31841851 | MS.gene42077:CDS |
| GGAACCATGGAAGGGAGAAT+TGG | 0.411829 | 7.2:-31845174 | None:intergenic |
| TGAAAATGCAGAGAAATTCC+TGG | 0.440898 | 7.2:-31841523 | MS.gene42077:CDS |
| AAGAAGATTGTTCTAGAGTA+TGG | 0.452684 | 7.2:-31841558 | MS.gene42077:CDS |
| ACTCAAGAAGTCAGAAAGAA+AGG | 0.456844 | 7.2:+31841437 | None:intergenic |
| TCACAAAGTGCGCACACATC+TGG | 0.464769 | 7.2:+31842679 | None:intergenic |
| ACCTTATTGCAGAAATCTCC+AGG | 0.483134 | 7.2:+31842189 | None:intergenic |
| TGCATATATCTGTCTTCTCC+AGG | 0.494087 | 7.2:+31841505 | None:intergenic |
| CAAGAGGACTTGCAAACCCT+TGG | 0.501291 | 7.2:-31845107 | MS.gene42077:CDS |
| AATTGGACTCTTGTTTATTG+TGG | 0.502021 | 7.2:-31845157 | MS.gene42077:CDS |
| AGTGGACAAGTTTGGGAGCA+AGG | 0.504563 | 7.2:-31841844 | MS.gene42077:intron |
| TCTTCTCAAAAGTGTGAAGC+TGG | 0.512735 | 7.2:+31842572 | None:intergenic |
| AGATAACTAACCTCAGTGTC+AGG | 0.513065 | 7.2:+31842063 | None:intergenic |
| GTAAAAGATGTTACCAGAAG+AGG | 0.513841 | 7.2:+31845062 | None:intergenic |
| TGTTCTAGAGTATGGTCCCT+TGG | 0.519354 | 7.2:-31841550 | MS.gene42077:CDS |
| CACTGCATTACATGCTTGCA+AGG | 0.531010 | 7.2:-31841484 | MS.gene42077:CDS |
| GAGTCCAATTCTCCCTTCCA+TGG | 0.540717 | 7.2:+31845170 | None:intergenic |
| GTCATTTCTGAGAAGAAAAG+TGG | 0.545442 | 7.2:+31842222 | None:intergenic |
| GAAATGACCTCAGTTCAGCC+TGG | 0.547453 | 7.2:-31842207 | MS.gene42077:CDS |
| ATTTATATAATCAAGTGCCT+TGG | 0.554678 | 7.2:+31842645 | None:intergenic |
| TTGCAGCAATGATGCTCCAA+GGG | 0.555078 | 7.2:+31845091 | None:intergenic |
| TGTACAGTGCATCAACTTGG+TGG | 0.565409 | 7.2:-31842256 | MS.gene42077:intron |
| GCTGAAAGTGTGCACTTCAG+TGG | 0.567114 | 7.2:-31841862 | MS.gene42077:CDS |
| CTGAAGTGCACACTTTCAGC+AGG | 0.572426 | 7.2:+31841865 | None:intergenic |
| GCTCTGGCTTGTGATGCAAG+AGG | 0.590110 | 7.2:-31845123 | MS.gene42077:CDS |
| AATTGTACAGTGCATCAACT+TGG | 0.599834 | 7.2:-31842259 | MS.gene42077:intron |
| TTTGCAGCAATGATGCTCCA+AGG | 0.601227 | 7.2:+31845090 | None:intergenic |
| AGATGTGTGCGCACTTTGTG+AGG | 0.640022 | 7.2:-31842677 | MS.gene42077:CDS |
| GAAATCTCCAGGCTGAACTG+AGG | 0.667607 | 7.2:+31842200 | None:intergenic |
| TTGTGAGGAATATACTACCA+AGG | 0.703017 | 7.2:-31842662 | MS.gene42077:CDS |
| GATAAAAGATCCTGACACTG+AGG | 0.712954 | 7.2:-31842073 | MS.gene42077:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAACAATATAATAAACTA+AGG | + | chr7.2:31842505-31842524 | None:intergenic | 10.0% |
| !! | TAAACAATATAATAAACTAA+GGG | + | chr7.2:31842504-31842523 | None:intergenic | 10.0% |
| !!! | TTTTTTCCTATAAAATTTTT+CGG | - | chr7.2:31843561-31843580 | MS.gene42077:intron | 10.0% |
| !! | AAACAATATAATAAACTAAG+GGG | + | chr7.2:31842503-31842522 | None:intergenic | 15.0% |
| !! | AAAGTAGATTTCTTAATAAT+TGG | + | chr7.2:31842866-31842885 | None:intergenic | 15.0% |
| !! | AATTATCTTCATATACTATA+AGG | - | chr7.2:31844804-31844823 | MS.gene42077:intron | 15.0% |
| !! | TACAATTGTTGAAAAAATAA+AGG | - | chr7.2:31843078-31843097 | MS.gene42077:intron | 15.0% |
| !! | TTCTATCTATTAATGAATAT+TGG | - | chr7.2:31841541-31841560 | MS.gene42077:CDS | 15.0% |
| !!! | AAACAATATTTTTATCAGAA+TGG | - | chr7.2:31845139-31845158 | MS.gene42077:CDS | 15.0% |
| !!! | ATTTTGTTTTCATTTTTCAT+AGG | + | chr7.2:31841622-31841641 | None:intergenic | 15.0% |
| !!! | TAAAAACATGATATTTTTGT+AGG | - | chr7.2:31842066-31842085 | MS.gene42077:intron | 15.0% |
| !!! | TTAATAAGTTGAACTTATTT+AGG | - | chr7.2:31842751-31842770 | MS.gene42077:intron | 15.0% |
| !! | AAAAACACATGAATTGATAA+AGG | + | chr7.2:31844259-31844278 | None:intergenic | 20.0% |
| !! | AACAATATAATAAACTAAGG+GGG | + | chr7.2:31842502-31842521 | None:intergenic | 20.0% |
| !! | AGTTCAACTTATTAATACTT+AGG | + | chr7.2:31842746-31842765 | None:intergenic | 20.0% |
| !! | ATAGAATTATCAGAAAATTG+TGG | + | chr7.2:31844745-31844764 | None:intergenic | 20.0% |
| !! | GATGAAAAAAAAGTTTGATT+AGG | + | chr7.2:31844918-31844937 | None:intergenic | 20.0% |
| !! | TAAAATAAAACCGATATGAA+AGG | - | chr7.2:31843692-31843711 | MS.gene42077:intron | 20.0% |
| !! | TAATGCTTAGTATATATTGA+GGG | - | chr7.2:31842961-31842980 | MS.gene42077:intron | 20.0% |
| !! | TCTCAAATTATTAATCGTAT+TGG | - | chr7.2:31844155-31844174 | MS.gene42077:intron | 20.0% |
| !! | TTAATGCTTAGTATATATTG+AGG | - | chr7.2:31842960-31842979 | MS.gene42077:intron | 20.0% |
| !! | TTTAAATCAAAGATAAGTGT+AGG | - | chr7.2:31842009-31842028 | MS.gene42077:intron | 20.0% |
| !!! | AATTTTGGAAACAGAATAAT+TGG | - | chr7.2:31843320-31843339 | MS.gene42077:intron | 20.0% |
| !!! | TAAATGAGAAGTATTTTGTT+GGG | - | chr7.2:31843384-31843403 | MS.gene42077:intron | 20.0% |
| !!! | TATACGGTTATAATATGTTT+TGG | + | chr7.2:31843411-31843430 | None:intergenic | 20.0% |
| !!! | TATTTGTTACATATTTATCC+AGG | - | chr7.2:31842545-31842564 | MS.gene42077:intron | 20.0% |
| !!! | TATTTTATGGACAAATTGTT+TGG | + | chr7.2:31843679-31843698 | None:intergenic | 20.0% |
| !!! | TGTATTTTCTTGAACTTTTA+AGG | + | chr7.2:31844408-31844427 | None:intergenic | 20.0% |
| !!! | TTAAATGAGAAGTATTTTGT+TGG | - | chr7.2:31843383-31843402 | MS.gene42077:intron | 20.0% |
| !!! | TTCATATCGGTTTTATTTTA+TGG | + | chr7.2:31843692-31843711 | None:intergenic | 20.0% |
| !!! | TTTCATTTTAAAATTTCAGC+TGG | - | chr7.2:31844641-31844660 | MS.gene42077:intron | 20.0% |
| !!! | TTTGATCCGAAAAATTTTAT+AGG | + | chr7.2:31843570-31843589 | None:intergenic | 20.0% |
| ! | AAAATTAATTGACATTGCTG+TGG | - | chr7.2:31842124-31842143 | MS.gene42077:CDS | 25.0% |
| ! | AAATTAATTGACATTGCTGT+GGG | - | chr7.2:31842125-31842144 | MS.gene42077:CDS | 25.0% |
| ! | ACAAAAATACCGAAAACAAA+CGG | + | chr7.2:31843260-31843279 | None:intergenic | 25.0% |
| ! | ATGAGGATATAGGAAATTTA+TGG | - | chr7.2:31842350-31842369 | MS.gene42077:intron | 25.0% |
| ! | ATTTATATAATCAAGTGCCT+TGG | + | chr7.2:31843900-31843919 | None:intergenic | 25.0% |
| ! | CAAAATAAAGCCTTTCATAT+CGG | + | chr7.2:31843705-31843724 | None:intergenic | 25.0% |
| ! | CTATTAATGAATATTGGTGA+AGG | - | chr7.2:31841547-31841566 | MS.gene42077:CDS | 25.0% |
| ! | TCTATGATTTGATAGAAATG+AGG | - | chr7.2:31842333-31842352 | MS.gene42077:intron | 25.0% |
| ! | TGAGGATATAGGAAATTTAT+GGG | - | chr7.2:31842351-31842370 | MS.gene42077:intron | 25.0% |
| ! | TTGTAGGATACATTAATTAG+TGG | - | chr7.2:31842082-31842101 | MS.gene42077:CDS | 25.0% |
| ! | TTTGATAGAAATGAGGATAT+AGG | - | chr7.2:31842340-31842359 | MS.gene42077:intron | 25.0% |
| !! | TTCAAACCATTTTCAAACAT+CGG | - | chr7.2:31841942-31841961 | MS.gene42077:intron | 25.0% |
| !! | TTGATTTAAAGTGATGTCTA+AGG | + | chr7.2:31841999-31842018 | None:intergenic | 25.0% |
| !!! | TATATAATGCCGTTTGTTTT+CGG | - | chr7.2:31843248-31843267 | MS.gene42077:intron | 25.0% |
| AAATGAGACAATGACACAAT+TGG | + | chr7.2:31841860-31841879 | None:intergenic | 30.0% | |
| ACCAAAACACAAGATACAAA+AGG | + | chr7.2:31844006-31844025 | None:intergenic | 30.0% | |
| AGACATTTACTGCAAAGTAA+AGG | - | chr7.2:31842832-31842851 | MS.gene42077:intron | 30.0% | |
| AGGAAATATTAGCAATGTTC+TGG | + | chr7.2:31844388-31844407 | None:intergenic | 30.0% | |
| AGTAAATGTCTAAGGAAAGA+GGG | + | chr7.2:31842823-31842842 | None:intergenic | 30.0% | |
| AGTGATGAAACAGTTTCATT+TGG | + | chr7.2:31844568-31844587 | None:intergenic | 30.0% | |
| ATATTCTAAGTGACAACAGA+TGG | - | chr7.2:31842374-31842393 | MS.gene42077:intron | 30.0% | |
| ATGGGTGCTTACAATTTATA+CGG | + | chr7.2:31843427-31843446 | None:intergenic | 30.0% | |
| ATGTTAGTACTAGGTATAGA+AGG | - | chr7.2:31842933-31842952 | MS.gene42077:intron | 30.0% | |
| CAGCAATGTTAGATGAAAAT+GGG | + | chr7.2:31843445-31843464 | None:intergenic | 30.0% | |
| CAGTAAAATATGTCACATGA+AGG | - | chr7.2:31843223-31843242 | MS.gene42077:intron | 30.0% | |
| CCCTTGTATTCATGATATAT+CGG | + | chr7.2:31842465-31842484 | None:intergenic | 30.0% | |
| CCGATATATCATGAATACAA+GGG | - | chr7.2:31842462-31842481 | MS.gene42077:intron | 30.0% | |
| CCTATATCATTGATGTTGAT+CGG | - | chr7.2:31842990-31843009 | MS.gene42077:intron | 30.0% | |
| CGGATCAAATTCTATAGTAT+AGG | - | chr7.2:31843581-31843600 | MS.gene42077:intron | 30.0% | |
| GGATGCTATGAATTTATAGT+AGG | - | chr7.2:31843011-31843030 | MS.gene42077:intron | 30.0% | |
| TACAGTTTGAATTGCAAATG+TGG | - | chr7.2:31843786-31843805 | MS.gene42077:intron | 30.0% | |
| TACTTTGCAGTAAATGTCTA+AGG | + | chr7.2:31842831-31842850 | None:intergenic | 30.0% | |
| TCACATGAAGGTTTAGATAA+TGG | - | chr7.2:31843184-31843203 | MS.gene42077:intron | 30.0% | |
| TCAGCAATGTTAGATGAAAA+TGG | + | chr7.2:31843446-31843465 | None:intergenic | 30.0% | |
| TTCAGTCAACAAAAAACAAG+TGG | - | chr7.2:31843283-31843302 | MS.gene42077:intron | 30.0% | |
| TTGAAAAAGATAGAGCAAGA+CGG | - | chr7.2:31843119-31843138 | MS.gene42077:intron | 30.0% | |
| TTGTTGAAATTGTAGCTCAT+TGG | + | chr7.2:31843537-31843556 | None:intergenic | 30.0% | |
| ! | AATTGGACTCTTGTTTATTG+TGG | - | chr7.2:31841385-31841404 | MS.gene42077:CDS | 30.0% |
| ! | ACCTTTTGTATCTTGTGTTT+TGG | - | chr7.2:31844002-31844021 | MS.gene42077:intron | 30.0% |
| ! | ATTTAAAGTGATGTCTAAGG+TGG | + | chr7.2:31841996-31842015 | None:intergenic | 30.0% |
| ! | GACTTCTTGAGTATCTTTTA+TGG | - | chr7.2:31845116-31845135 | MS.gene42077:CDS | 30.0% |
| ! | GATTTTCAGACCATGAAAAA+TGG | - | chr7.2:31844830-31844849 | MS.gene42077:intron | 30.0% |
| ! | GTAGTAGAATTTGTTTCTCT+AGG | + | chr7.2:31844781-31844800 | None:intergenic | 30.0% |
| ! | TATCAAAGATTTTCACGTGA+TGG | + | chr7.2:31843741-31843760 | None:intergenic | 30.0% |
| ! | TCTGCATTTTCAAATACCAA+GGG | + | chr7.2:31845011-31845030 | None:intergenic | 30.0% |
| ! | TTTAAAGTGATGTCTAAGGT+GGG | + | chr7.2:31841995-31842014 | None:intergenic | 30.0% |
| !! | AAGAAGATTGTTCTAGAGTA+TGG | - | chr7.2:31844984-31845003 | MS.gene42077:intron | 30.0% |
| !! | GAATTGACAACCATTTTTCA+TGG | + | chr7.2:31844843-31844862 | None:intergenic | 30.0% |
| !!! | GTGTCATTGTCTCATTTTTT+AGG | - | chr7.2:31841863-31841882 | MS.gene42077:CDS | 30.0% |
| AATTGTACAGTGCATCAACT+TGG | - | chr7.2:31844283-31844302 | MS.gene42077:intron | 35.0% | |
| ACATATTTATCCAGGAAACC+TGG | - | chr7.2:31842553-31842572 | MS.gene42077:intron | 35.0% | |
| ACTCAAGAAGTCAGAAAGAA+AGG | + | chr7.2:31845108-31845127 | None:intergenic | 35.0% | |
| AGAAACTGTTTCGTCACTAT+TGG | - | chr7.2:31844442-31844461 | MS.gene42077:intron | 35.0% | |
| AGATAAGTGTAGGAAGTTTC+TGG | - | chr7.2:31842019-31842038 | MS.gene42077:intron | 35.0% | |
| AGCTTTCTGTCATAACATGA+TGG | + | chr7.2:31842611-31842630 | None:intergenic | 35.0% | |
| AGTTCAAATTGTGGCTTATG+TGG | - | chr7.2:31842640-31842659 | MS.gene42077:CDS | 35.0% | |
| ATTATCAGTCAACTCGTTGA+GGG | + | chr7.2:31842218-31842237 | None:intergenic | 35.0% | |
| CAGATTATAATACCAAGACC+AGG | + | chr7.2:31842574-31842593 | None:intergenic | 35.0% | |
| CAGTAAATGTCTAAGGAAAG+AGG | + | chr7.2:31842824-31842843 | None:intergenic | 35.0% | |
| CCGATCAACATCAATGATAT+AGG | + | chr7.2:31842993-31843012 | None:intergenic | 35.0% | |
| GAAATTGTAGCTCATTGGTA+AGG | + | chr7.2:31843532-31843551 | None:intergenic | 35.0% | |
| GACTTATGGGAAGTAAGATA+TGG | - | chr7.2:31842293-31842312 | MS.gene42077:intron | 35.0% | |
| GCCGATATATCATGAATACA+AGG | - | chr7.2:31842461-31842480 | MS.gene42077:intron | 35.0% | |
| GTAAAAGATGTTACCAGAAG+AGG | + | chr7.2:31841483-31841502 | None:intergenic | 35.0% | |
| GTTTCCTAGAGTTCAAATTG+TGG | - | chr7.2:31842631-31842650 | MS.gene42077:CDS | 35.0% | |
| TAAGCCACAATTTGAACTCT+AGG | + | chr7.2:31842638-31842657 | None:intergenic | 35.0% | |
| TATTATCAGTCAACTCGTTG+AGG | + | chr7.2:31842219-31842238 | None:intergenic | 35.0% | |
| TCATACAAAGTCCTCAATCT+TGG | + | chr7.2:31843483-31843502 | None:intergenic | 35.0% | |
| TCGGATTATCTATCTATGAC+AGG | - | chr7.2:31842173-31842192 | MS.gene42077:CDS | 35.0% | |
| TGAAAATGCAGAGAAATTCC+TGG | - | chr7.2:31845019-31845038 | MS.gene42077:intron | 35.0% | |
| TGTCATAGATAGATAATCCG+AGG | + | chr7.2:31842174-31842193 | None:intergenic | 35.0% | |
| TTGAATGCAATCACATGTGT+CGG | + | chr7.2:31844124-31844143 | None:intergenic | 35.0% | |
| TTGTGAGGAATATACTACCA+AGG | - | chr7.2:31843880-31843899 | MS.gene42077:intron | 35.0% | |
| TTTCTTCATACTGCAGAACT+AGG | - | chr7.2:31843833-31843852 | MS.gene42077:intron | 35.0% | |
| ! | AAGGAGCAAAAGTACGTTTA+AGG | - | chr7.2:31841566-31841585 | MS.gene42077:intron | 35.0% |
| ! | ACGCTTTCTTTAAGGACTTA+TGG | - | chr7.2:31842279-31842298 | MS.gene42077:intron | 35.0% |
| ! | ACTCTGTTGTTGTTCTGATA+TGG | - | chr7.2:31843041-31843060 | MS.gene42077:intron | 35.0% |
| ! | CGAACATAAGATGAGTTTTG+AGG | - | chr7.2:31841721-31841740 | MS.gene42077:intron | 35.0% |
| ! | CGAATCGCTATTACATTTTG+TGG | - | chr7.2:31844598-31844617 | MS.gene42077:intron | 35.0% |
| ! | CGCTTTCTTTAAGGACTTAT+GGG | - | chr7.2:31842280-31842299 | MS.gene42077:intron | 35.0% |
| ! | CTCTGCATTTTCAAATACCA+AGG | + | chr7.2:31845012-31845031 | None:intergenic | 35.0% |
| ! | CTCTTGTTTATTGTGGTACT+AGG | - | chr7.2:31841392-31841411 | MS.gene42077:CDS | 35.0% |
| ! | GCAAAAGTACGTTTAAGGAT+TGG | - | chr7.2:31841571-31841590 | MS.gene42077:intron | 35.0% |
| ! | GTAGAATTTGTTTCTCTAGG+AGG | + | chr7.2:31844778-31844797 | None:intergenic | 35.0% |
| ! | GTCATTTCTGAGAAGAAAAG+TGG | + | chr7.2:31844323-31844342 | None:intergenic | 35.0% |
| ! | TAGTTCTGCAGTATGAAGAA+AGG | + | chr7.2:31843834-31843853 | None:intergenic | 35.0% |
| ! | TTAAAGTGATGTCTAAGGTG+GGG | + | chr7.2:31841994-31842013 | None:intergenic | 35.0% |
| !!! | TCAAGCAGTTTTAGGTATGA+AGG | + | chr7.2:31842260-31842279 | None:intergenic | 35.0% |
| AACCTTGCGATGTTAGTACT+AGG | - | chr7.2:31842924-31842943 | MS.gene42077:intron | 40.0% | |
| AATCGCTTTGACCAAGATTG+AGG | - | chr7.2:31843469-31843488 | MS.gene42077:intron | 40.0% | |
| ACAAACAAACCTGTGCAGTT+TGG | - | chr7.2:31842403-31842422 | MS.gene42077:intron | 40.0% | |
| ACCTAGGAGGAAATCTTAGT+AGG | - | chr7.2:31843351-31843370 | MS.gene42077:intron | 40.0% | |
| ACCTTATTGCAGAAATCTCC+AGG | + | chr7.2:31844356-31844375 | None:intergenic | 40.0% | |
| ACTGCTTGACGCTTTCTTTA+AGG | - | chr7.2:31842271-31842290 | MS.gene42077:intron | 40.0% | |
| AGATAACTAACCTCAGTGTC+AGG | + | chr7.2:31844482-31844501 | None:intergenic | 40.0% | |
| AGTCTTAGCCGTATGATTGA+CGG | + | chr7.2:31841667-31841686 | None:intergenic | 40.0% | |
| ATCTATGACAGGCTTAACAG+CGG | - | chr7.2:31842184-31842203 | MS.gene42077:CDS | 40.0% | |
| ATTATGAGCTTCTGCGTATG+AGG | - | chr7.2:31841895-31841914 | MS.gene42077:intron | 40.0% | |
| CAACAAAAAACAAGTGGCAG+TGG | - | chr7.2:31843289-31843308 | MS.gene42077:intron | 40.0% | |
| CCTAGGAGGAAATCTTAGTA+GGG | - | chr7.2:31843352-31843371 | MS.gene42077:intron | 40.0% | |
| CGATTCATTGTGTCACATGA+AGG | - | chr7.2:31843172-31843191 | MS.gene42077:intron | 40.0% | |
| CTAAGATTTCCTCCTAGGTT+CGG | + | chr7.2:31843350-31843369 | None:intergenic | 40.0% | |
| GACTTTGTCCGTCAATCATA+CGG | - | chr7.2:31841656-31841675 | MS.gene42077:intron | 40.0% | |
| GATAAAAGATCCTGACACTG+AGG | - | chr7.2:31844469-31844488 | MS.gene42077:intron | 40.0% | |
| GGTATGAGCATCTACATATG+AGG | - | chr7.2:31841827-31841846 | MS.gene42077:intron | 40.0% | |
| TACCTAGTACTAACATCGCA+AGG | + | chr7.2:31842929-31842948 | None:intergenic | 40.0% | |
| TGAGACGAGTAAGACTATGA+GGG | - | chr7.2:31841806-31841825 | MS.gene42077:intron | 40.0% | |
| TGCATATATCTGTCTTCTCC+AGG | + | chr7.2:31845040-31845059 | None:intergenic | 40.0% | |
| TGTGATAACCTATGTAGCAC+TGG | - | chr7.2:31844047-31844066 | MS.gene42077:intron | 40.0% | |
| TGTTTGTGTCAGTGCTTCAT+AGG | - | chr7.2:31844210-31844229 | MS.gene42077:intron | 40.0% | |
| ! | TATGAAGGAGGTGGATTTAC+AGG | + | chr7.2:31842245-31842264 | None:intergenic | 40.0% |
| ! | TCTTCTCAAAAGTGTGAAGC+TGG | + | chr7.2:31843973-31843992 | None:intergenic | 40.0% |
| !! | CACACTTTTGAGAAGAAGGT+TGG | - | chr7.2:31843977-31843996 | MS.gene42077:intron | 40.0% |
| !! | GCTTCACACTTTTGAGAAGA+AGG | - | chr7.2:31843973-31843992 | MS.gene42077:intron | 40.0% |
| !!! | AGAAAGCGTCAAGCAGTTTT+AGG | + | chr7.2:31842268-31842287 | None:intergenic | 40.0% |
| !!! | AGCAGTTTTAGGTATGAAGG+AGG | + | chr7.2:31842257-31842276 | None:intergenic | 40.0% |
| !!! | AGTTTTAGGTATGAAGGAGG+TGG | + | chr7.2:31842254-31842273 | None:intergenic | 40.0% |
| AAGTGTCTGGTACGGTTTAC+GGG | + | chr7.2:31841971-31841990 | None:intergenic | 45.0% | |
| AATACCAAGACCAGGTTTCC+TGG | + | chr7.2:31842566-31842585 | None:intergenic | 45.0% | |
| ACAAACACCAACGCTAGACA+CGG | + | chr7.2:31844197-31844216 | None:intergenic | 45.0% | |
| ATAATTGGCAGACCGAACCT+AGG | - | chr7.2:31843335-31843354 | MS.gene42077:intron | 45.0% | |
| ATGAGTGACTCAATCAGTGC+TGG | + | chr7.2:31841781-31841800 | None:intergenic | 45.0% | |
| CACTGACACATGTCGGATAT+TGG | + | chr7.2:31844092-31844111 | None:intergenic | 45.0% | |
| CACTGCATTACATGCTTGCA+AGG | - | chr7.2:31845058-31845077 | MS.gene42077:intron | 45.0% | |
| CCCTACTAAGATTTCCTCCT+AGG | + | chr7.2:31843355-31843374 | None:intergenic | 45.0% | |
| GCACTTCAGTGGACAAGTTT+GGG | - | chr7.2:31844691-31844710 | MS.gene42077:intron | 45.0% | |
| GCCTGGAGATTTCTGCAATA+AGG | - | chr7.2:31844352-31844371 | MS.gene42077:intron | 45.0% | |
| GGGGAACCGATGTTTGAAAA+TGG | + | chr7.2:31841951-31841970 | None:intergenic | 45.0% | |
| GTGAGACGAGTAAGACTATG+AGG | - | chr7.2:31841805-31841824 | MS.gene42077:intron | 45.0% | |
| TATCCGACATGTGTCAGTGT+CGG | - | chr7.2:31844093-31844112 | MS.gene42077:intron | 45.0% | |
| TGCACTTCAGTGGACAAGTT+TGG | - | chr7.2:31844690-31844709 | MS.gene42077:intron | 45.0% | |
| TGTACAGTGCATCAACTTGG+TGG | - | chr7.2:31844286-31844305 | MS.gene42077:intron | 45.0% | |
| TTATCCAGGAAACCTGGTCT+TGG | - | chr7.2:31842559-31842578 | MS.gene42077:intron | 45.0% | |
| TTGCAGCAATGATGCTCCAA+GGG | + | chr7.2:31841454-31841473 | None:intergenic | 45.0% | |
| TTTGCAGCAATGATGCTCCA+AGG | + | chr7.2:31841455-31841474 | None:intergenic | 45.0% | |
| ! | GAAGTGTCTGGTACGGTTTA+CGG | + | chr7.2:31841972-31841991 | None:intergenic | 45.0% |
| ! | GCAGTGGCAGAGATCAATTT+TGG | - | chr7.2:31843305-31843324 | MS.gene42077:intron | 45.0% |
| ! | TGCACAGGTTTGTTTGTCGA+TGG | + | chr7.2:31842400-31842419 | None:intergenic | 45.0% |
| ! | TGTGGTACTAGGTTTTGCTC+TGG | - | chr7.2:31841403-31841422 | MS.gene42077:CDS | 45.0% |
| !! | GTAAGTTCTAGGCATGTCCT+CGG | - | chr7.2:31842154-31842173 | MS.gene42077:CDS | 45.0% |
| !! | TGTTCTAGAGTATGGTCCCT+TGG | - | chr7.2:31844992-31845011 | MS.gene42077:intron | 45.0% |
| AGATGTGTGCGCACTTTGTG+AGG | - | chr7.2:31843865-31843884 | MS.gene42077:intron | 50.0% | |
| AGTGGACAAGTTTGGGAGCA+AGG | - | chr7.2:31844698-31844717 | MS.gene42077:intron | 50.0% | |
| AGTGTCTGGTACGGTTTACG+GGG | + | chr7.2:31841970-31841989 | None:intergenic | 50.0% | |
| CAAGAGGACTTGCAAACCCT+TGG | - | chr7.2:31841435-31841454 | MS.gene42077:CDS | 50.0% | |
| CTGAAGTGCACACTTTCAGC+AGG | + | chr7.2:31844680-31844699 | None:intergenic | 50.0% | |
| GAAATCTCCAGGCTGAACTG+AGG | + | chr7.2:31844345-31844364 | None:intergenic | 50.0% | |
| GAAATGACCTCAGTTCAGCC+TGG | - | chr7.2:31844335-31844354 | MS.gene42077:intron | 50.0% | |
| GTGGGTGTGCTGTAAGTTCT+AGG | - | chr7.2:31842143-31842162 | MS.gene42077:CDS | 50.0% | |
| TCACAAAGTGCGCACACATC+TGG | + | chr7.2:31843866-31843885 | None:intergenic | 50.0% | |
| TGTCCGACACTGACACATGT+CGG | + | chr7.2:31844099-31844118 | None:intergenic | 50.0% | |
| TTGACGTGCCAGTGCTACAT+AGG | + | chr7.2:31844058-31844077 | None:intergenic | 50.0% | |
| ! | GCTGAAAGTGTGCACTTCAG+TGG | - | chr7.2:31844680-31844699 | MS.gene42077:intron | 50.0% |
| ACCTGTCCTCGCACAGTGAT+GGG | + | chr7.2:31842432-31842451 | None:intergenic | 55.0% | |
| ATCAGTGCCGTGTCTAGCGT+TGG | - | chr7.2:31844187-31844206 | MS.gene42077:intron | 55.0% | |
| ATTGGCAGACCGAACCTAGG+AGG | - | chr7.2:31843338-31843357 | MS.gene42077:intron | 55.0% | |
| GCTGCAAACTCTGCCTCTTC+TGG | - | chr7.2:31841467-31841486 | MS.gene42077:CDS | 55.0% | |
| ! | GCTCTGGCTTGTGATGCAAG+AGG | - | chr7.2:31841419-31841438 | MS.gene42077:CDS | 55.0% |
| !! | AGGTGGGGAAGTGTCTGGTA+CGG | + | chr7.2:31841979-31841998 | None:intergenic | 55.0% |
| !! | GTCTAAGGTGGGGAAGTGTC+TGG | + | chr7.2:31841984-31842003 | None:intergenic | 55.0% |
| ACCCATCACTGTGCGAGGAC+AGG | - | chr7.2:31842428-31842447 | MS.gene42077:intron | 60.0% | |
| GACCTGTCCTCGCACAGTGA+TGG | + | chr7.2:31842433-31842452 | None:intergenic | 60.0% | |
| GATGGGTGGCCAAACTGCAC+AGG | + | chr7.2:31842415-31842434 | None:intergenic | 60.0% | |
| ! | TGTCCTCGCACAGTGATGGG+TGG | + | chr7.2:31842429-31842448 | None:intergenic | 60.0% |
| TGGCCACCCATCACTGTGCG+AGG | - | chr7.2:31842423-31842442 | MS.gene42077:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 31841374 | 31845190 | 31841374 | ID=MS.gene42077 |
| chr7.2 | mRNA | 31841374 | 31845190 | 31841374 | ID=MS.gene42077.t1;Parent=MS.gene42077 |
| chr7.2 | exon | 31845076 | 31845190 | 31845076 | ID=MS.gene42077.t1.exon1;Parent=MS.gene42077.t1 |
| chr7.2 | CDS | 31845076 | 31845190 | 31845076 | ID=cds.MS.gene42077.t1;Parent=MS.gene42077.t1 |
| chr7.2 | exon | 31842570 | 31842715 | 31842570 | ID=MS.gene42077.t1.exon2;Parent=MS.gene42077.t1 |
| chr7.2 | CDS | 31842570 | 31842715 | 31842570 | ID=cds.MS.gene42077.t1;Parent=MS.gene42077.t1 |
| chr7.2 | exon | 31842074 | 31842271 | 31842074 | ID=MS.gene42077.t1.exon3;Parent=MS.gene42077.t1 |
| chr7.2 | CDS | 31842074 | 31842271 | 31842074 | ID=cds.MS.gene42077.t1;Parent=MS.gene42077.t1 |
| chr7.2 | exon | 31841845 | 31841904 | 31841845 | ID=MS.gene42077.t1.exon4;Parent=MS.gene42077.t1 |
| chr7.2 | CDS | 31841845 | 31841904 | 31841845 | ID=cds.MS.gene42077.t1;Parent=MS.gene42077.t1 |
| chr7.2 | exon | 31841374 | 31841583 | 31841374 | ID=MS.gene42077.t1.exon5;Parent=MS.gene42077.t1 |
| chr7.2 | CDS | 31841374 | 31841583 | 31841374 | ID=cds.MS.gene42077.t1;Parent=MS.gene42077.t1 |
| Gene Sequence |
| Protein sequence |
