Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42147.t1 | XP_003623411.2 | 97.9 | 436 | 9 | 0 | 1 | 436 | 17 | 452 | 3.20E-241 | 844 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42147.t1 | Q9SCU1 | 73.2 | 399 | 102 | 2 | 22 | 420 | 11 | 404 | 2.4e-168 | 593.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42147.t1 | G7KU47 | 97.9 | 436 | 9 | 0 | 1 | 436 | 1 | 436 | 2.3e-241 | 844.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene42147 | 0.805569 | 1.25E-49 | -1.69E-46 |
| MS.gene054614 | MS.gene42147 | 0.817096 | 3.94E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42147.t1 | MTR_7g070480 | 97.936 | 436 | 9 | 0 | 1 | 436 | 1 | 436 | 0.0 | 885 |
| MS.gene42147.t1 | MTR_4g013300 | 74.463 | 419 | 91 | 5 | 15 | 420 | 31 | 446 | 0.0 | 648 |
| MS.gene42147.t1 | MTR_8g095360 | 44.712 | 416 | 214 | 10 | 1 | 411 | 87 | 491 | 5.49e-116 | 349 |
| MS.gene42147.t1 | MTR_2g031610 | 42.790 | 423 | 192 | 8 | 45 | 420 | 46 | 465 | 1.22e-113 | 342 |
| MS.gene42147.t1 | MTR_4g033435 | 48.193 | 332 | 163 | 6 | 85 | 411 | 257 | 584 | 8.46e-108 | 331 |
| MS.gene42147.t1 | MTR_3g097350 | 49.085 | 328 | 157 | 7 | 84 | 406 | 234 | 556 | 2.12e-107 | 329 |
| MS.gene42147.t1 | MTR_1g069915 | 39.017 | 346 | 200 | 6 | 71 | 411 | 118 | 457 | 3.61e-79 | 253 |
| MS.gene42147.t1 | MTR_4g033435 | 52.607 | 211 | 93 | 4 | 85 | 291 | 257 | 464 | 3.13e-73 | 237 |
| MS.gene42147.t1 | MTR_8g096170 | 28.440 | 218 | 141 | 5 | 98 | 313 | 50 | 254 | 1.30e-18 | 85.5 |
| MS.gene42147.t1 | MTR_3g098530 | 26.136 | 264 | 167 | 6 | 56 | 304 | 12 | 262 | 2.27e-18 | 85.1 |
| MS.gene42147.t1 | MTR_5g021050 | 26.792 | 265 | 160 | 9 | 60 | 310 | 48 | 292 | 1.51e-17 | 85.1 |
| MS.gene42147.t1 | MTR_5g021050 | 26.792 | 265 | 160 | 9 | 60 | 310 | 48 | 292 | 2.05e-17 | 84.7 |
| MS.gene42147.t1 | MTR_8g096180 | 28.230 | 209 | 135 | 5 | 98 | 304 | 47 | 242 | 2.54e-17 | 81.6 |
| MS.gene42147.t1 | MTR_3g117100 | 26.557 | 305 | 194 | 10 | 26 | 310 | 32 | 326 | 3.63e-17 | 84.3 |
| MS.gene42147.t1 | MTR_8g096180 | 27.064 | 218 | 136 | 5 | 98 | 304 | 47 | 252 | 1.43e-15 | 76.6 |
| MS.gene42147.t1 | MTR_4g070810 | 27.602 | 221 | 134 | 8 | 100 | 304 | 107 | 317 | 2.42e-15 | 78.6 |
| MS.gene42147.t1 | MTR_1g022480 | 25.839 | 298 | 187 | 13 | 29 | 304 | 37 | 322 | 3.45e-15 | 78.2 |
| MS.gene42147.t1 | MTR_1g022480 | 25.839 | 298 | 187 | 13 | 29 | 304 | 37 | 322 | 3.71e-15 | 78.2 |
| MS.gene42147.t1 | MTR_1g022480 | 25.338 | 296 | 191 | 11 | 29 | 304 | 37 | 322 | 4.51e-15 | 77.8 |
| MS.gene42147.t1 | MTR_1g062480 | 52.542 | 59 | 19 | 1 | 260 | 318 | 43 | 92 | 1.21e-14 | 69.7 |
| MS.gene42147.t1 | MTR_4g070790 | 26.941 | 219 | 138 | 7 | 100 | 304 | 84 | 294 | 1.52e-14 | 75.5 |
| MS.gene42147.t1 | MTR_3g112150 | 27.273 | 220 | 136 | 8 | 100 | 304 | 93 | 303 | 1.78e-14 | 75.9 |
| MS.gene42147.t1 | MTR_4g070720 | 24.262 | 305 | 188 | 9 | 30 | 310 | 27 | 312 | 2.16e-14 | 75.5 |
| MS.gene42147.t1 | MTR_3g117090 | 26.786 | 224 | 144 | 6 | 100 | 310 | 97 | 313 | 5.00e-14 | 74.3 |
| MS.gene42147.t1 | MTR_3g117090 | 26.786 | 224 | 144 | 6 | 100 | 310 | 97 | 313 | 5.45e-14 | 74.3 |
| MS.gene42147.t1 | MTR_1g022480 | 25.926 | 216 | 138 | 8 | 103 | 304 | 31 | 238 | 2.22e-13 | 72.4 |
| MS.gene42147.t1 | MTR_8g076880 | 27.232 | 224 | 143 | 6 | 100 | 310 | 79 | 295 | 1.14e-12 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42147.t1 | AT3G51670 | 73.183 | 399 | 102 | 2 | 22 | 420 | 11 | 404 | 0.0 | 611 |
| MS.gene42147.t1 | AT1G72160 | 46.891 | 386 | 187 | 11 | 47 | 419 | 108 | 488 | 3.46e-112 | 338 |
| MS.gene42147.t1 | AT4G09160 | 47.644 | 382 | 183 | 10 | 47 | 419 | 265 | 638 | 3.72e-112 | 343 |
| MS.gene42147.t1 | AT4G09160 | 47.644 | 382 | 183 | 10 | 47 | 419 | 265 | 638 | 3.77e-112 | 343 |
| MS.gene42147.t1 | AT4G09160 | 47.644 | 382 | 183 | 10 | 47 | 419 | 290 | 663 | 4.23e-112 | 344 |
| MS.gene42147.t1 | AT1G30690 | 45.245 | 347 | 172 | 8 | 85 | 424 | 205 | 540 | 1.63e-98 | 305 |
| MS.gene42147.t1 | AT1G30690 | 45.245 | 347 | 172 | 8 | 85 | 424 | 205 | 540 | 1.63e-98 | 305 |
| MS.gene42147.t1 | AT1G22530 | 43.582 | 335 | 171 | 9 | 84 | 411 | 318 | 641 | 1.72e-86 | 277 |
| MS.gene42147.t1 | AT1G22530 | 43.582 | 335 | 171 | 9 | 84 | 411 | 352 | 675 | 2.35e-86 | 278 |
| MS.gene42147.t1 | AT1G72150 | 39.823 | 339 | 187 | 10 | 84 | 416 | 243 | 570 | 9.01e-77 | 249 |
| MS.gene42147.t1 | AT2G21540 | 28.444 | 225 | 139 | 7 | 100 | 310 | 95 | 311 | 5.41e-17 | 83.6 |
| MS.gene42147.t1 | AT2G21540 | 28.444 | 225 | 139 | 7 | 100 | 310 | 95 | 311 | 5.41e-17 | 83.6 |
| MS.gene42147.t1 | AT2G21540 | 28.444 | 225 | 139 | 7 | 100 | 310 | 95 | 311 | 6.10e-17 | 83.6 |
| MS.gene42147.t1 | AT2G21540 | 28.444 | 225 | 139 | 7 | 100 | 310 | 95 | 311 | 6.10e-17 | 83.6 |
| MS.gene42147.t1 | AT2G21540 | 28.444 | 225 | 139 | 7 | 100 | 310 | 95 | 311 | 6.10e-17 | 83.6 |
| MS.gene42147.t1 | AT2G21540 | 28.444 | 225 | 139 | 7 | 100 | 310 | 95 | 311 | 6.10e-17 | 83.6 |
| MS.gene42147.t1 | AT4G39180 | 28.444 | 225 | 139 | 7 | 100 | 310 | 96 | 312 | 6.93e-17 | 83.2 |
| MS.gene42147.t1 | AT4G39180 | 28.444 | 225 | 139 | 7 | 100 | 310 | 96 | 312 | 6.93e-17 | 83.2 |
| MS.gene42147.t1 | AT4G39180 | 28.444 | 225 | 139 | 7 | 100 | 310 | 96 | 312 | 7.39e-17 | 83.2 |
| MS.gene42147.t1 | AT4G39170 | 26.165 | 279 | 165 | 10 | 26 | 279 | 32 | 294 | 1.22e-16 | 82.8 |
| MS.gene42147.t1 | AT4G39170 | 26.165 | 279 | 165 | 10 | 26 | 279 | 32 | 294 | 1.37e-16 | 82.4 |
| MS.gene42147.t1 | AT4G34580 | 27.876 | 226 | 139 | 8 | 100 | 310 | 88 | 304 | 3.75e-16 | 81.3 |
| MS.gene42147.t1 | AT4G34580 | 27.876 | 226 | 139 | 8 | 100 | 310 | 88 | 304 | 3.75e-16 | 81.3 |
| MS.gene42147.t1 | AT4G36490 | 25.890 | 309 | 190 | 11 | 16 | 310 | 11 | 294 | 7.06e-16 | 80.1 |
| MS.gene42147.t1 | AT2G18180 | 28.444 | 225 | 139 | 7 | 100 | 310 | 81 | 297 | 1.81e-15 | 79.0 |
| MS.gene42147.t1 | AT2G18180 | 28.444 | 225 | 139 | 7 | 100 | 310 | 81 | 297 | 2.20e-15 | 78.6 |
| MS.gene42147.t1 | AT1G19650 | 28.139 | 231 | 139 | 9 | 100 | 314 | 104 | 323 | 5.36e-15 | 77.8 |
| MS.gene42147.t1 | AT2G16380 | 27.897 | 233 | 144 | 8 | 92 | 310 | 82 | 304 | 5.47e-15 | 77.4 |
| MS.gene42147.t1 | AT2G16380 | 27.897 | 233 | 144 | 8 | 92 | 310 | 82 | 304 | 5.47e-15 | 77.4 |
| MS.gene42147.t1 | AT1G19650 | 27.753 | 227 | 138 | 8 | 100 | 310 | 104 | 320 | 6.20e-15 | 77.0 |
| MS.gene42147.t1 | AT2G21520 | 24.364 | 275 | 177 | 9 | 26 | 279 | 36 | 300 | 8.91e-15 | 77.0 |
| MS.gene42147.t1 | AT2G21520 | 24.364 | 275 | 177 | 9 | 26 | 279 | 36 | 300 | 8.91e-15 | 77.0 |
| MS.gene42147.t1 | AT2G21520 | 24.364 | 275 | 177 | 9 | 26 | 279 | 32 | 296 | 1.02e-14 | 76.6 |
| MS.gene42147.t1 | AT1G01630 | 24.111 | 253 | 168 | 6 | 61 | 304 | 8 | 245 | 2.68e-14 | 73.2 |
| MS.gene42147.t1 | AT4G08690 | 24.413 | 213 | 142 | 5 | 96 | 304 | 41 | 238 | 4.04e-13 | 70.1 |
| MS.gene42147.t1 | AT4G08690 | 24.413 | 213 | 142 | 5 | 96 | 304 | 41 | 238 | 4.04e-13 | 70.1 |
| MS.gene42147.t1 | AT4G08690 | 24.413 | 213 | 142 | 5 | 96 | 304 | 41 | 238 | 4.04e-13 | 70.1 |
| MS.gene42147.t1 | AT1G55840 | 25.581 | 215 | 130 | 8 | 101 | 299 | 12 | 212 | 3.41e-12 | 67.4 |
| MS.gene42147.t1 | AT1G55840 | 25.581 | 215 | 130 | 8 | 101 | 299 | 39 | 239 | 3.58e-12 | 67.8 |
| MS.gene42147.t1 | AT2G18180 | 28.218 | 202 | 123 | 7 | 123 | 310 | 6 | 199 | 2.20e-11 | 65.9 |
Find 70 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTAGCTAGCTTCTGAATT+TGG | 0.176395 | 7.3:+34182018 | None:intergenic |
| GCTTCTGAGTTCACTGTTAA+AGG | 0.184177 | 7.3:-34182778 | MS.gene42147:CDS |
| GTGAACTCAGAAGCTGGTTT+TGG | 0.239830 | 7.3:+34182787 | None:intergenic |
| TTCCATTAATGTTGTGACTA+TGG | 0.244429 | 7.3:+34184235 | None:intergenic |
| ACCTTGCGAGCAACCATTTC+AGG | 0.251411 | 7.3:+34183603 | None:intergenic |
| AACCATAGTCACAACATTAA+TGG | 0.252522 | 7.3:-34184237 | MS.gene42147:CDS |
| TGCTTGTGAAGTGTCTTTCT+TGG | 0.273998 | 7.3:-34183977 | MS.gene42147:CDS |
| AAATGTTGTGGATGAAGATT+TGG | 0.311161 | 7.3:-34183934 | MS.gene42147:CDS |
| TGTAGTTGGAGGCTGGGATT+TGG | 0.312615 | 7.3:-34182061 | MS.gene42147:CDS |
| CGGTCGATAACTCTGCTTCT+AGG | 0.324064 | 7.3:-34181903 | MS.gene42147:CDS |
| GATTCAAGTTACTGATCTTA+AGG | 0.332587 | 7.3:-34183691 | MS.gene42147:CDS |
| GAGAATATTCCTATTCAATA+TGG | 0.337092 | 7.3:-34182847 | MS.gene42147:CDS |
| TTAGTTCTTTGAGTCAGAAA+TGG | 0.368588 | 7.3:+34183167 | None:intergenic |
| TTTCTTGGAGTTTCTAGAAA+TGG | 0.388074 | 7.3:+34184284 | None:intergenic |
| ACAACCCTTAACTCACTCTT+AGG | 0.396909 | 7.3:+34183663 | None:intergenic |
| GAGCAAGTTTGTGATCTCTA+AGG | 0.402946 | 7.3:-34183144 | MS.gene42147:CDS |
| TCAAGATAACTATCCTGAAA+TGG | 0.404693 | 7.3:-34183616 | MS.gene42147:CDS |
| GGGAGATTGTAGTTGGAGGC+TGG | 0.407967 | 7.3:-34182068 | MS.gene42147:CDS |
| CTTTCTTGGAGAAAAGAGTT+TGG | 0.411163 | 7.3:-34183963 | MS.gene42147:CDS |
| TTTCTAGAAATGGTGTGCTT+AGG | 0.436314 | 7.3:+34184294 | None:intergenic |
| AACAAAAGAAGCAGGCATAA+TGG | 0.443455 | 7.3:-34181932 | MS.gene42147:CDS |
| AATGTTGTGGATGAAGATTT+GGG | 0.445253 | 7.3:-34183933 | MS.gene42147:CDS |
| ACCCCACATGGAACCATTGT+TGG | 0.449973 | 7.3:+34184091 | None:intergenic |
| CTCAATCCACCATATTGAAT+AGG | 0.453387 | 7.3:+34182838 | None:intergenic |
| TTTCTCTGAGGATTTGAGGT+TGG | 0.459242 | 7.3:+34184163 | None:intergenic |
| GGAGATTGTAGTTGGAGGCT+GGG | 0.463853 | 7.3:-34182067 | MS.gene42147:CDS |
| AAAGTGAACATACAAATAGA+AGG | 0.473146 | 7.3:-34182748 | MS.gene42147:CDS |
| ATATGCCTAAGAGTGAGTTA+AGG | 0.474991 | 7.3:-34183668 | MS.gene42147:CDS |
| ATCAAAGAATTCACCCCACC+AGG | 0.485860 | 7.3:+34183711 | None:intergenic |
| CTACACTATAGAAGTTGAAA+AGG | 0.488723 | 7.3:-34182001 | MS.gene42147:CDS |
| TATGCCTAAGAGTGAGTTAA+GGG | 0.489546 | 7.3:-34183667 | MS.gene42147:CDS |
| TCCTGAAATGGTTGCTCGCA+AGG | 0.491332 | 7.3:-34183604 | MS.gene42147:intron |
| ATCAAGTGGGAGATTGTAGT+TGG | 0.499306 | 7.3:-34182075 | MS.gene42147:CDS |
| AAAAGCATTGAAACAGTTGA+AGG | 0.500192 | 7.3:-34184141 | MS.gene42147:CDS |
| TTATGGTGTGTTCAAAGATA+AGG | 0.503248 | 7.3:-34183835 | MS.gene42147:CDS |
| TTGGGATTCAAAGAGCTTGA+AGG | 0.513195 | 7.3:-34183915 | MS.gene42147:CDS |
| CCTGTGTGTTACAATCATTA+TGG | 0.517072 | 7.3:-34183852 | MS.gene42147:CDS |
| TTAACAGTGAACTCAGAAGC+TGG | 0.523617 | 7.3:+34182781 | None:intergenic |
| TACTCATGGGTTTGATAGAG+AGG | 0.524005 | 7.3:-34183880 | MS.gene42147:CDS |
| AGGGTTCAAGTTCTTGAAAG+AGG | 0.527798 | 7.3:-34183756 | MS.gene42147:CDS |
| AATATTCCTATTCAATATGG+TGG | 0.536024 | 7.3:-34182844 | MS.gene42147:CDS |
| AGCAGGCATAATGGTACTCT+CGG | 0.541621 | 7.3:-34181923 | MS.gene42147:CDS |
| AGGCTTAATTGCATATCAGA+TGG | 0.543533 | 7.3:+34181826 | None:intergenic |
| TTTACAGTTTAAACCTGGTG+GGG | 0.553174 | 7.3:-34183724 | MS.gene42147:CDS |
| TAAGCCTCAAAATCAAATAG+TGG | 0.553201 | 7.3:-34181810 | None:intergenic |
| TGGGGTGTTTGTTTGATCAA+AGG | 0.560070 | 7.3:-34184074 | MS.gene42147:CDS |
| GGGTTCAAGTTCTTGAAAGA+GGG | 0.561782 | 7.3:-34183755 | MS.gene42147:CDS |
| TATTGAATAGGAATATTCTC+AGG | 0.562576 | 7.3:+34182850 | None:intergenic |
| TCATTCACAACAAAAGAAGC+AGG | 0.565896 | 7.3:-34181940 | MS.gene42147:CDS |
| ACTCATGGGTTTGATAGAGA+GGG | 0.567534 | 7.3:-34183879 | MS.gene42147:CDS |
| GATCAAACAAACACCCCACA+TGG | 0.575221 | 7.3:+34184079 | None:intergenic |
| ACCAACAATGGTTCCATGTG+GGG | 0.581025 | 7.3:-34184092 | MS.gene42147:CDS |
| CACCAACAATGGTTCCATGT+GGG | 0.582397 | 7.3:-34184093 | MS.gene42147:CDS |
| AAGTGGGAGATTGTAGTTGG+AGG | 0.586468 | 7.3:-34182072 | MS.gene42147:CDS |
| AGATAAGGAAATGTATGAGA+AGG | 0.595028 | 7.3:-34183820 | MS.gene42147:CDS |
| CCATAATGATTGTAACACAC+AGG | 0.599317 | 7.3:+34183852 | None:intergenic |
| CTATAGAAGTTGAAAAGGCA+AGG | 0.600332 | 7.3:-34181996 | MS.gene42147:CDS |
| GTTTGGTGCTGAAAATGTTG+TGG | 0.600996 | 7.3:-34183946 | MS.gene42147:CDS |
| CATACAAATAGAAGGAGTTG+AGG | 0.610399 | 7.3:-34182740 | MS.gene42147:intron |
| TCTGATGAAATCACCAACAA+TGG | 0.612895 | 7.3:-34184104 | MS.gene42147:CDS |
| TACAACATGCTGAAATACCA+TGG | 0.625322 | 7.3:+34183203 | None:intergenic |
| AGAAAGACACTTCACAAGCA+TGG | 0.625599 | 7.3:+34183980 | None:intergenic |
| AGAGTGGTGCAACAATCAAG+TGG | 0.626220 | 7.3:-34182089 | MS.gene42147:CDS |
| GGACCATTCTGAAAATCACT+AGG | 0.626931 | 7.3:+34182811 | None:intergenic |
| TCTGAGTTCACTGTTAAAGG+AGG | 0.633144 | 7.3:-34182775 | MS.gene42147:CDS |
| AAGTTTGTGATCTCTAAGGA+AGG | 0.634705 | 7.3:-34183140 | MS.gene42147:CDS |
| GAGTGGTGCAACAATCAAGT+GGG | 0.657297 | 7.3:-34182088 | MS.gene42147:CDS |
| TCACCAACAATGGTTCCATG+TGG | 0.667118 | 7.3:-34184094 | MS.gene42147:CDS |
| CATAATGATTGTAACACACA+GGG | 0.667567 | 7.3:+34183853 | None:intergenic |
| TGGTGTGCTTAGGATTGACA+TGG | 0.671206 | 7.3:+34184304 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTAACTACATTTTACA+TGG | - | chr7.3:34183516-34183535 | MS.gene42147:intron | 15.0% |
| !!! | TTTTTTTGTTCAGATTTATA+AGG | - | chr7.3:34183269-34183288 | MS.gene42147:intron | 15.0% |
| !! | ACAATAATAGAAAAATTGTG+GGG | + | chr7.3:34183226-34183245 | None:intergenic | 20.0% |
| !! | CACAATAATAGAAAAATTGT+GGG | + | chr7.3:34183227-34183246 | None:intergenic | 20.0% |
| !! | TCTTATTAGAGACTATATAA+TGG | - | chr7.3:34183450-34183469 | MS.gene42147:intron | 20.0% |
| !! | TTTATTTGAAGAAAGTAACA+TGG | - | chr7.3:34182605-34182624 | MS.gene42147:intron | 20.0% |
| !! | TTTCATGTCATACTAAATAT+AGG | + | chr7.3:34182883-34182902 | None:intergenic | 20.0% |
| !!! | AGATGTAATTTTAGAAAATC+TGG | - | chr7.3:34183085-34183104 | MS.gene42147:intron | 20.0% |
| !!! | ATCAACTACAAATTTTAATG+TGG | - | chr7.3:34183620-34183639 | MS.gene42147:CDS | 20.0% |
| !!! | CTATTTAAAACGTTTACTTT+TGG | - | chr7.3:34183806-34183825 | MS.gene42147:CDS | 20.0% |
| !!! | GAATTTTCTCAAATTGTTAA+CGG | - | chr7.3:34182787-34182806 | MS.gene42147:CDS | 20.0% |
| !!! | TACGTTTAAGATATGTATAT+TGG | - | chr7.3:34183922-34183941 | MS.gene42147:CDS | 20.0% |
| !!! | TTATTTTGGTGTTGTATATT+TGG | - | chr7.3:34182637-34182656 | MS.gene42147:intron | 20.0% |
| ! | AAAGTGAACATACAAATAGA+AGG | - | chr7.3:34183394-34183413 | MS.gene42147:intron | 25.0% |
| ! | AATATTCCTATTCAATATGG+TGG | - | chr7.3:34183298-34183317 | MS.gene42147:intron | 25.0% |
| ! | ACAAAAACAATGACATATCA+AGG | + | chr7.3:34182566-34182585 | None:intergenic | 25.0% |
| ! | GACTATATAATGGTTACTTA+TGG | - | chr7.3:34183460-34183479 | MS.gene42147:intron | 25.0% |
| ! | GAGAATATTCCTATTCAATA+TGG | - | chr7.3:34183295-34183314 | MS.gene42147:intron | 25.0% |
| ! | GCACAATAATAGAAAAATTG+TGG | + | chr7.3:34183228-34183247 | None:intergenic | 25.0% |
| ! | TAATGGTTACTTATGGTTTA+AGG | - | chr7.3:34183467-34183486 | MS.gene42147:intron | 25.0% |
| ! | TATTGAATAGGAATATTCTC+AGG | + | chr7.3:34183295-34183314 | None:intergenic | 25.0% |
| ! | TTTATAACCTTGCAAATTTG+TGG | - | chr7.3:34183702-34183721 | MS.gene42147:CDS | 25.0% |
| !! | CATAAACATCATTGATGTTT+TGG | + | chr7.3:34183058-34183077 | None:intergenic | 25.0% |
| !! | TTGTTTGTTGATATATAGAC+AGG | + | chr7.3:34183190-34183209 | None:intergenic | 25.0% |
| !!! | CATGGATTGTTTTGTTATTT+TGG | - | chr7.3:34182623-34182642 | MS.gene42147:intron | 25.0% |
| AAATGTTGTGGATGAAGATT+TGG | - | chr7.3:34182208-34182227 | MS.gene42147:intron | 30.0% | |
| AACCATAGTCACAACATTAA+TGG | - | chr7.3:34181905-34181924 | MS.gene42147:CDS | 30.0% | |
| AATGTTGTGGATGAAGATTT+GGG | - | chr7.3:34182209-34182228 | MS.gene42147:intron | 30.0% | |
| AATTTGCAAGGTTATAAACG+CGG | + | chr7.3:34183700-34183719 | None:intergenic | 30.0% | |
| AGATAAGGAAATGTATGAGA+AGG | - | chr7.3:34182322-34182341 | MS.gene42147:intron | 30.0% | |
| AGCAAAAGTAAAGCCTAAAA+AGG | + | chr7.3:34183159-34183178 | None:intergenic | 30.0% | |
| CAAAATTGATCTATGAAGCA+CGG | - | chr7.3:34183833-34183852 | MS.gene42147:CDS | 30.0% | |
| CATAATGATTGTAACACACA+GGG | + | chr7.3:34182292-34182311 | None:intergenic | 30.0% | |
| CTACACTATAGAAGTTGAAA+AGG | - | chr7.3:34184141-34184160 | MS.gene42147:CDS | 30.0% | |
| CTGTAATTATATGTGAGTGT+CGG | + | chr7.3:34182758-34182777 | None:intergenic | 30.0% | |
| TCAAGATAACTATCCTGAAA+TGG | - | chr7.3:34182526-34182545 | MS.gene42147:intron | 30.0% | |
| TCATTTACCACAAATTTGCA+AGG | + | chr7.3:34183712-34183731 | None:intergenic | 30.0% | |
| TTATGGTGTGTTCAAAGATA+AGG | - | chr7.3:34182307-34182326 | MS.gene42147:intron | 30.0% | |
| TTCCATTAATGTTGTGACTA+TGG | + | chr7.3:34181910-34181929 | None:intergenic | 30.0% | |
| ! | AAGCTTTTACAGTTTAAACC+TGG | - | chr7.3:34182413-34182432 | MS.gene42147:intron | 30.0% |
| ! | GAAATGTATGAGAAGGTTTT+TGG | - | chr7.3:34182329-34182348 | MS.gene42147:intron | 30.0% |
| ! | GATTCAAGTTACTGATCTTA+AGG | - | chr7.3:34182451-34182470 | MS.gene42147:intron | 30.0% |
| ! | GTGTATTGTTGCTGTATTTT+CGG | + | chr7.3:34184297-34184316 | None:intergenic | 30.0% |
| ! | TCACTAATTGTTGATTAGAG+TGG | - | chr7.3:34184037-34184056 | MS.gene42147:CDS | 30.0% |
| ! | TTAGTTCTTTGAGTCAGAAA+TGG | + | chr7.3:34182978-34182997 | None:intergenic | 30.0% |
| ! | TTTCTTGGAGTTTCTAGAAA+TGG | + | chr7.3:34181861-34181880 | None:intergenic | 30.0% |
| ! | TTTGTGACTGTTTCCTTTTT+AGG | - | chr7.3:34183143-34183162 | MS.gene42147:CDS | 30.0% |
| ! | TTTTACAGTTTAAACCTGGT+GGG | - | chr7.3:34182417-34182436 | MS.gene42147:intron | 30.0% |
| !! | AAAAGCATTGAAACAGTTGA+AGG | - | chr7.3:34182001-34182020 | MS.gene42147:CDS | 30.0% |
| !! | AGTTGAAGAAGTTTTTGAGA+TGG | - | chr7.3:34182363-34182382 | MS.gene42147:intron | 30.0% |
| !!! | GTTCTTTTGTTTGGTTTTGA+GGG | + | chr7.3:34181888-34181907 | None:intergenic | 30.0% |
| !!! | TTTCAATGCTTTTTTCTCTG+AGG | + | chr7.3:34181994-34182013 | None:intergenic | 30.0% |
| AACAAAAGAAGCAGGCATAA+TGG | - | chr7.3:34184210-34184229 | MS.gene42147:CDS | 35.0% | |
| AATCGATATACTAGGTGTCA+CGG | - | chr7.3:34183568-34183587 | MS.gene42147:intron | 35.0% | |
| ACGTCGGTCATTGAAAATAT+AGG | - | chr7.3:34183893-34183912 | MS.gene42147:CDS | 35.0% | |
| AGGCTTAATTGCATATCAGA+TGG | + | chr7.3:34184319-34184338 | None:intergenic | 35.0% | |
| ATATGCCTAAGAGTGAGTTA+AGG | - | chr7.3:34182474-34182493 | MS.gene42147:intron | 35.0% | |
| ATGAAACGAAATTCGATAGC+TGG | + | chr7.3:34183602-34183621 | None:intergenic | 35.0% | |
| CATACAAATAGAAGGAGTTG+AGG | - | chr7.3:34183402-34183421 | MS.gene42147:intron | 35.0% | |
| CCATAATGATTGTAACACAC+AGG | + | chr7.3:34182293-34182312 | None:intergenic | 35.0% | |
| CCTGTGTGTTACAATCATTA+TGG | - | chr7.3:34182290-34182309 | MS.gene42147:intron | 35.0% | |
| CTATAGAAGTTGAAAAGGCA+AGG | - | chr7.3:34184146-34184165 | MS.gene42147:CDS | 35.0% | |
| CTCAATCCACCATATTGAAT+AGG | + | chr7.3:34183307-34183326 | None:intergenic | 35.0% | |
| CTCTGGTTAATCGATATACT+AGG | - | chr7.3:34183560-34183579 | MS.gene42147:intron | 35.0% | |
| CTTTCTTGGAGAAAAGAGTT+TGG | - | chr7.3:34182179-34182198 | MS.gene42147:intron | 35.0% | |
| GTAGCAAATTGCTTTCACAT+TGG | + | chr7.3:34183989-34184008 | None:intergenic | 35.0% | |
| TACAACATGCTGAAATACCA+TGG | + | chr7.3:34182942-34182961 | None:intergenic | 35.0% | |
| TATGCCTAAGAGTGAGTTAA+GGG | - | chr7.3:34182475-34182494 | MS.gene42147:intron | 35.0% | |
| TCATTCACAACAAAAGAAGC+AGG | - | chr7.3:34184202-34184221 | MS.gene42147:CDS | 35.0% | |
| TCTCAAATTGTTAACGGTGT+CGG | - | chr7.3:34182793-34182812 | MS.gene42147:CDS | 35.0% | |
| TCTGATGAAATCACCAACAA+TGG | - | chr7.3:34182038-34182057 | MS.gene42147:CDS | 35.0% | |
| TTACACCCAATATTGAAGCA+CGG | - | chr7.3:34182686-34182705 | MS.gene42147:intron | 35.0% | |
| TTTACAGTTTAAACCTGGTG+GGG | - | chr7.3:34182418-34182437 | MS.gene42147:intron | 35.0% | |
| ! | AAGTTTGTGATCTCTAAGGA+AGG | - | chr7.3:34183002-34183021 | MS.gene42147:intron | 35.0% |
| ! | AGATTTTCATCAATGTGCCA+TGG | - | chr7.3:34182922-34182941 | MS.gene42147:intron | 35.0% |
| ! | ATTTTCAATGACCGACGTAT+CGG | + | chr7.3:34183891-34183910 | None:intergenic | 35.0% |
| ! | CTTTTACAGTTTAAACCTGG+TGG | - | chr7.3:34182416-34182435 | MS.gene42147:intron | 35.0% |
| ! | GTGACTATGGTTCTTTTGTT+TGG | + | chr7.3:34181897-34181916 | None:intergenic | 35.0% |
| ! | TTTCTAGAAATGGTGTGCTT+AGG | + | chr7.3:34181851-34181870 | None:intergenic | 35.0% |
| !! | AGGCTTTACTTTTGCTGAAT+TGG | - | chr7.3:34183163-34183182 | MS.gene42147:CDS | 35.0% |
| !!! | CTTTTTTCTCTGAGGATTTG+AGG | + | chr7.3:34181986-34182005 | None:intergenic | 35.0% |
| !!! | GAAGAAGTTTTTGAGATGGA+GGG | - | chr7.3:34182367-34182386 | MS.gene42147:intron | 35.0% |
| !!! | GGTTCTTTTGTTTGGTTTTG+AGG | + | chr7.3:34181889-34181908 | None:intergenic | 35.0% |
| !!! | GTGTTGTTGCTTTTACTCAT+GGG | - | chr7.3:34182249-34182268 | MS.gene42147:intron | 35.0% |
| !!! | TGAAGAAGTTTTTGAGATGG+AGG | - | chr7.3:34182366-34182385 | MS.gene42147:intron | 35.0% |
| AAGTGTCCGTGCTTCAATAT+TGG | + | chr7.3:34182695-34182714 | None:intergenic | 40.0% | |
| ACAACCCTTAACTCACTCTT+AGG | + | chr7.3:34182482-34182501 | None:intergenic | 40.0% | |
| ACTCATGGGTTTGATAGAGA+GGG | - | chr7.3:34182263-34182282 | MS.gene42147:intron | 40.0% | |
| AGAAAGACACTTCACAAGCA+TGG | + | chr7.3:34182165-34182184 | None:intergenic | 40.0% | |
| AGTGTCCGTGCTTCAATATT+GGG | + | chr7.3:34182694-34182713 | None:intergenic | 40.0% | |
| ATCAAGTGGGAGATTGTAGT+TGG | - | chr7.3:34184067-34184086 | MS.gene42147:CDS | 40.0% | |
| GAGCAAGTTTGTGATCTCTA+AGG | - | chr7.3:34182998-34183017 | MS.gene42147:intron | 40.0% | |
| GCTTCTGAGTTCACTGTTAA+AGG | - | chr7.3:34183364-34183383 | MS.gene42147:intron | 40.0% | |
| TACTCATGGGTTTGATAGAG+AGG | - | chr7.3:34182262-34182281 | MS.gene42147:intron | 40.0% | |
| TCTGAGTTCACTGTTAAAGG+AGG | - | chr7.3:34183367-34183386 | MS.gene42147:intron | 40.0% | |
| TTAACAGTGAACTCAGAAGC+TGG | + | chr7.3:34183364-34183383 | None:intergenic | 40.0% | |
| TTGGGATTCAAAGAGCTTGA+AGG | - | chr7.3:34182227-34182246 | MS.gene42147:intron | 40.0% | |
| ! | AGGGTTCAAGTTCTTGAAAG+AGG | - | chr7.3:34182386-34182405 | MS.gene42147:intron | 40.0% |
| ! | CACTAATGAAGTGTTTGCTC+TGG | - | chr7.3:34183543-34183562 | MS.gene42147:intron | 40.0% |
| ! | CGACCTAGTGATTTTCAGAA+TGG | - | chr7.3:34183328-34183347 | MS.gene42147:intron | 40.0% |
| ! | GGACCATTCTGAAAATCACT+AGG | + | chr7.3:34183334-34183353 | None:intergenic | 40.0% |
| ! | GGGTTCAAGTTCTTGAAAGA+GGG | - | chr7.3:34182387-34182406 | MS.gene42147:intron | 40.0% |
| ! | GGTTATAAACGCGGATTTTC+AGG | + | chr7.3:34183691-34183710 | None:intergenic | 40.0% |
| ! | GTGTAGCTAGCTTCTGAATT+TGG | + | chr7.3:34184127-34184146 | None:intergenic | 40.0% |
| ! | TGCTTGTGAAGTGTCTTTCT+TGG | - | chr7.3:34182165-34182184 | MS.gene42147:intron | 40.0% |
| ! | TGGGGTGTTTGTTTGATCAA+AGG | - | chr7.3:34182068-34182087 | MS.gene42147:CDS | 40.0% |
| ! | TTTCTCTGAGGATTTGAGGT+TGG | + | chr7.3:34181982-34182001 | None:intergenic | 40.0% |
| !! | GTTTGGTGCTGAAAATGTTG+TGG | - | chr7.3:34182196-34182215 | MS.gene42147:intron | 40.0% |
| !! | TGTGGTTAGTCGCAATTTTG+AGG | - | chr7.3:34183638-34183657 | MS.gene42147:CDS | 40.0% |
| !!! | AGGTTCTGAGTTCGAACTTT+TGG | - | chr7.3:34183487-34183506 | MS.gene42147:intron | 40.0% |
| !!! | GGTGTTGTTGCTTTTACTCA+TGG | - | chr7.3:34182248-34182267 | MS.gene42147:intron | 40.0% |
| !!! | GGTTTTGAGGGAGTTTTTCT+TGG | + | chr7.3:34181876-34181895 | None:intergenic | 40.0% |
| !!! | TGAACTCAGAAGCTGGTTTT+GGG | + | chr7.3:34183357-34183376 | None:intergenic | 40.0% |
| AAGTGGGAGATTGTAGTTGG+AGG | - | chr7.3:34184070-34184089 | MS.gene42147:CDS | 45.0% | |
| ACCAACAATGGTTCCATGTG+GGG | - | chr7.3:34182050-34182069 | MS.gene42147:CDS | 45.0% | |
| ACGATACGTATCCGATACGT+CGG | - | chr7.3:34183877-34183896 | MS.gene42147:CDS | 45.0% | |
| AGAGTGGTGCAACAATCAAG+TGG | - | chr7.3:34184053-34184072 | MS.gene42147:CDS | 45.0% | |
| AGCAGGCATAATGGTACTCT+CGG | - | chr7.3:34184219-34184238 | MS.gene42147:CDS | 45.0% | |
| ATCAAAGAATTCACCCCACC+AGG | + | chr7.3:34182434-34182453 | None:intergenic | 45.0% | |
| ATCAAGCACGGATACGAACA+CGG | + | chr7.3:34182850-34182869 | None:intergenic | 45.0% | |
| ATTGAAGCACGGACACTTCT+CGG | - | chr7.3:34182697-34182716 | MS.gene42147:intron | 45.0% | |
| CACCAACAATGGTTCCATGT+GGG | - | chr7.3:34182049-34182068 | MS.gene42147:CDS | 45.0% | |
| GAGTGGTGCAACAATCAAGT+GGG | - | chr7.3:34184054-34184073 | MS.gene42147:CDS | 45.0% | |
| GATCAAACAAACACCCCACA+TGG | + | chr7.3:34182066-34182085 | None:intergenic | 45.0% | |
| GGTGTAAGTCCTATCAAGCA+CGG | + | chr7.3:34182862-34182881 | None:intergenic | 45.0% | |
| GGTGTGTTAGTATCCGTGTT+CGG | - | chr7.3:34182814-34182833 | MS.gene42147:CDS | 45.0% | |
| TCACCAACAATGGTTCCATG+TGG | - | chr7.3:34182048-34182067 | MS.gene42147:CDS | 45.0% | |
| TGATCTATGAAGCACGGACA+CGG | - | chr7.3:34183839-34183858 | MS.gene42147:CDS | 45.0% | |
| TGGTGTGCTTAGGATTGACA+TGG | + | chr7.3:34181841-34181860 | None:intergenic | 45.0% | |
| TGTTCGTATCCGTGCTTGAT+AGG | - | chr7.3:34182850-34182869 | MS.gene42147:CDS | 45.0% | |
| !! | GTGAACTCAGAAGCTGGTTT+TGG | + | chr7.3:34183358-34183377 | None:intergenic | 45.0% |
| !!! | AACTCAGAAGCTGGTTTTGG+GGG | + | chr7.3:34183355-34183374 | None:intergenic | 45.0% |
| !!! | GAACTCAGAAGCTGGTTTTG+GGG | + | chr7.3:34183356-34183375 | None:intergenic | 45.0% |
| ACCCCACATGGAACCATTGT+TGG | + | chr7.3:34182054-34182073 | None:intergenic | 50.0% | |
| ACCTTGCGAGCAACCATTTC+AGG | + | chr7.3:34182542-34182561 | None:intergenic | 50.0% | |
| ATACGACATGTGTCCGACAC+TGG | + | chr7.3:34182735-34182754 | None:intergenic | 50.0% | |
| ATGTGTCCGACACTGGAACA+CGG | + | chr7.3:34182728-34182747 | None:intergenic | 50.0% | |
| CGGTCGATAACTCTGCTTCT+AGG | - | chr7.3:34184239-34184258 | MS.gene42147:CDS | 50.0% | |
| GGAGATTGTAGTTGGAGGCT+GGG | - | chr7.3:34184075-34184094 | MS.gene42147:CDS | 50.0% | |
| TCCTGAAATGGTTGCTCGCA+AGG | - | chr7.3:34182538-34182557 | MS.gene42147:intron | 50.0% | |
| TGTAGTTGGAGGCTGGGATT+TGG | - | chr7.3:34184081-34184100 | MS.gene42147:CDS | 50.0% | |
| !! | TAGTATCCGTGTTCGGTGTC+CGG | - | chr7.3:34182821-34182840 | MS.gene42147:CDS | 50.0% |
| !!! | ACGCGGATTTTCAGGTGTTC+TGG | + | chr7.3:34183683-34183702 | None:intergenic | 50.0% |
| ACGGATACGAACACGGACAC+CGG | + | chr7.3:34182843-34182862 | None:intergenic | 55.0% | |
| ATGAAGCACGGACACGGTAC+AGG | - | chr7.3:34183845-34183864 | MS.gene42147:CDS | 55.0% | |
| GATCAGCCGTGTTCCAGTGT+CGG | - | chr7.3:34182719-34182738 | MS.gene42147:intron | 55.0% | |
| GGGAGATTGTAGTTGGAGGC+TGG | - | chr7.3:34184074-34184093 | MS.gene42147:CDS | 55.0% | |
| TGAAGCACGGACACGGTACA+GGG | - | chr7.3:34183846-34183865 | MS.gene42147:CDS | 55.0% | |
| CGGACACCGGACACCGAACA+CGG | + | chr7.3:34182830-34182849 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 34181813 | 34184351 | 34181813 | ID=MS.gene42147 |
| chr7.3 | mRNA | 34181813 | 34184351 | 34181813 | ID=MS.gene42147.t1;Parent=MS.gene42147 |
| chr7.3 | exon | 34183605 | 34184351 | 34183605 | ID=MS.gene42147.t1.exon1;Parent=MS.gene42147.t1 |
| chr7.3 | CDS | 34183605 | 34184351 | 34183605 | ID=cds.MS.gene42147.t1;Parent=MS.gene42147.t1 |
| chr7.3 | exon | 34183116 | 34183240 | 34183116 | ID=MS.gene42147.t1.exon2;Parent=MS.gene42147.t1 |
| chr7.3 | CDS | 34183116 | 34183240 | 34183116 | ID=cds.MS.gene42147.t1;Parent=MS.gene42147.t1 |
| chr7.3 | exon | 34182741 | 34182882 | 34182741 | ID=MS.gene42147.t1.exon3;Parent=MS.gene42147.t1 |
| chr7.3 | CDS | 34182741 | 34182882 | 34182741 | ID=cds.MS.gene42147.t1;Parent=MS.gene42147.t1 |
| chr7.3 | exon | 34181813 | 34182109 | 34181813 | ID=MS.gene42147.t1.exon4;Parent=MS.gene42147.t1 |
| chr7.3 | CDS | 34181813 | 34182109 | 34181813 | ID=cds.MS.gene42147.t1;Parent=MS.gene42147.t1 |
| Gene Sequence |
| Protein sequence |
