Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42196.t1 | GAU43673.1 | 69.6 | 537 | 109 | 8 | 110 | 629 | 40 | 539 | 2.90E-203 | 718.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42196.t1 | Q9M2U3 | 32.0 | 194 | 102 | 6 | 108 | 282 | 182 | 364 | 1.5e-17 | 92.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42196.t1 | A0A2Z6NNS9 | 69.6 | 537 | 109 | 8 | 110 | 629 | 40 | 539 | 2.1e-203 | 718.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050855 | MS.gene42196 | 0.899955 | 1.19E-77 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42196.t1 | MTR_0697s0010 | 84.375 | 320 | 31 | 4 | 306 | 621 | 1 | 305 | 0.0 | 535 |
| MS.gene42196.t1 | MTR_3g075160 | 65.046 | 329 | 107 | 5 | 306 | 630 | 1 | 325 | 1.15e-138 | 407 |
| MS.gene42196.t1 | MTR_3g453160 | 62.439 | 205 | 73 | 3 | 426 | 630 | 9 | 209 | 1.23e-73 | 235 |
| MS.gene42196.t1 | MTR_4g117940 | 87.736 | 106 | 13 | 0 | 2 | 107 | 71 | 176 | 3.73e-65 | 212 |
| MS.gene42196.t1 | MTR_4g055725 | 47.596 | 208 | 89 | 2 | 6 | 213 | 78 | 265 | 2.30e-55 | 189 |
| MS.gene42196.t1 | MTR_1g052620 | 84.706 | 85 | 13 | 0 | 537 | 621 | 1 | 85 | 7.73e-42 | 150 |
| MS.gene42196.t1 | MTR_4g117120 | 53.731 | 134 | 62 | 0 | 2 | 135 | 149 | 282 | 5.45e-39 | 148 |
| MS.gene42196.t1 | MTR_4g117120 | 46.739 | 92 | 38 | 2 | 238 | 328 | 285 | 366 | 4.92e-15 | 77.8 |
| MS.gene42196.t1 | MTR_7g094990 | 47.826 | 138 | 69 | 2 | 3 | 137 | 70 | 207 | 3.15e-25 | 108 |
| MS.gene42196.t1 | MTR_7g094990 | 40.870 | 115 | 50 | 5 | 339 | 448 | 167 | 268 | 6.74e-14 | 74.7 |
| MS.gene42196.t1 | MTR_8g463880 | 47.619 | 84 | 44 | 0 | 6 | 89 | 64 | 147 | 6.74e-17 | 78.6 |
| MS.gene42196.t1 | MTR_7g056633 | 45.882 | 85 | 46 | 0 | 6 | 90 | 32 | 116 | 2.26e-15 | 73.9 |
| MS.gene42196.t1 | MTR_5g063300 | 45.679 | 81 | 44 | 0 | 11 | 91 | 55 | 135 | 1.72e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42196.t1 | AT5G41980 | 39.412 | 340 | 178 | 8 | 6 | 340 | 42 | 358 | 3.33e-65 | 219 |
| MS.gene42196.t1 | AT1G43722 | 36.434 | 258 | 145 | 6 | 5 | 246 | 65 | 319 | 2.70e-41 | 153 |
| MS.gene42196.t1 | AT5G35695 | 39.037 | 187 | 96 | 3 | 129 | 314 | 3 | 172 | 1.52e-34 | 130 |
| MS.gene42196.t1 | AT3G30525 | 35.443 | 158 | 96 | 2 | 113 | 264 | 1 | 158 | 2.18e-24 | 100 |
| MS.gene42196.t1 | AT5G28950 | 46.739 | 92 | 46 | 2 | 91 | 181 | 9 | 98 | 7.43e-20 | 87.0 |
| MS.gene42196.t1 | AT3G55350 | 31.959 | 194 | 102 | 6 | 108 | 282 | 182 | 364 | 6.53e-18 | 87.0 |
| MS.gene42196.t1 | AT5G12010 | 24.214 | 318 | 204 | 8 | 11 | 308 | 180 | 480 | 2.11e-15 | 79.7 |
Find 122 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTTAGTTGTGGGTGTTTC+TGG | 0.116244 | 7.3:-29947840 | None:intergenic |
| GTCAAATTCATTGAACAAAT+TGG | 0.123596 | 7.3:+29947977 | MS.gene42196:CDS |
| AAAACAACCTAAACCAATTT+TGG | 0.140115 | 7.3:+29946165 | MS.gene42196:CDS |
| GGTCCAGGTGCAAGTGGTTT+TGG | 0.158436 | 7.3:+29947448 | MS.gene42196:CDS |
| GATAGCTTGGATACTGTATT+TGG | 0.169898 | 7.3:+29947669 | MS.gene42196:CDS |
| TTCTCGACCAAATGGTTTAA+AGG | 0.180350 | 7.3:+29946417 | MS.gene42196:CDS |
| GATCCTTTGGAAATGAATTT+AGG | 0.216478 | 7.3:+29946826 | MS.gene42196:CDS |
| GTCGCAAAGGTTATTGTCTT+TGG | 0.283992 | 7.3:-29948162 | None:intergenic |
| AGAAATGACATTGGATCCTT+TGG | 0.284461 | 7.3:+29946813 | MS.gene42196:CDS |
| TCTGTGTTGCCCTCCAAAAT+TGG | 0.291608 | 7.3:-29946178 | None:intergenic |
| TGTGACATGTTGCAAGTTAT+TGG | 0.297963 | 7.3:+29945962 | MS.gene42196:CDS |
| GCATTTCAGTAATGTATTAT+TGG | 0.314714 | 7.3:+29946114 | MS.gene42196:CDS |
| TGATTAGAAGACAATTTGTT+AGG | 0.357825 | 7.3:+29946071 | MS.gene42196:CDS |
| AATTATTTACATGAGTGATT+TGG | 0.358633 | 7.3:+29945892 | None:intergenic |
| TTGCCCTCCAAAATTGGTTT+AGG | 0.360631 | 7.3:-29946172 | None:intergenic |
| AATGTAATAGAAAGATGTTT+TGG | 0.366224 | 7.3:+29946682 | MS.gene42196:CDS |
| TTCACTCTTGATTCAATATG+TGG | 0.370372 | 7.3:-29947385 | None:intergenic |
| ACATATATGAATTGTAAATC+TGG | 0.373490 | 7.3:-29946340 | None:intergenic |
| TGAGGAACCTTTAAACCATT+TGG | 0.379841 | 7.3:-29946424 | None:intergenic |
| TATCTACCTTTGTCAGCTTC+CGG | 0.382459 | 7.3:-29946268 | None:intergenic |
| TGGCTTGAGGAAGCGGTTTG+TGG | 0.384622 | 7.3:+29948208 | MS.gene42196:CDS |
| TCAAATTCATTGAACAAATT+GGG | 0.385007 | 7.3:+29947978 | MS.gene42196:CDS |
| AGAAGACAATTTGTTAGGTC+TGG | 0.394249 | 7.3:+29946076 | MS.gene42196:CDS |
| ACCAATACTCCATCTTCTTC+AGG | 0.398208 | 7.3:-29947235 | None:intergenic |
| TGATACCTTTGACCTCTATA+AGG | 0.398826 | 7.3:-29946583 | None:intergenic |
| ACCTGGGTACACTAAAGCTT+TGG | 0.401458 | 7.3:+29947315 | MS.gene42196:CDS |
| TATTATTATTTATGTGATGC+TGG | 0.401796 | 7.3:+29946532 | MS.gene42196:CDS |
| GTCGAGAAATAGCATCTCTA+AGG | 0.403893 | 7.3:-29946402 | None:intergenic |
| AACGTGATTCTACTAATTAT+AGG | 0.406136 | 7.3:+29947898 | MS.gene42196:CDS |
| GGAAGGTTTGTTGAAATTAG+TGG | 0.408222 | 7.3:+29947258 | MS.gene42196:CDS |
| TCACGTTGTGGTTGGTTTGT+TGG | 0.419442 | 7.3:-29947882 | None:intergenic |
| AAGCTATCATAGTGTGGAAA+TGG | 0.420710 | 7.3:-29947654 | None:intergenic |
| TTCTGCAATCAAAGATATGT+TGG | 0.421190 | 7.3:+29947426 | MS.gene42196:CDS |
| CACAACTAACACTACTGCTC+CGG | 0.433275 | 7.3:+29947851 | MS.gene42196:CDS |
| TCAACACAAGAGGGCGGATC+AGG | 0.435640 | 7.3:+29947768 | MS.gene42196:CDS |
| GAGATAGCTACAAATGTGTT+AGG | 0.438755 | 7.3:+29946307 | MS.gene42196:CDS |
| AATTGTTTAGGAGCTCTTGA+TGG | 0.441154 | 7.3:+29946223 | MS.gene42196:CDS |
| GGATTTCTTACTCCTTATAG+AGG | 0.449800 | 7.3:+29946571 | MS.gene42196:CDS |
| TGAAATTAGTGGACGAGGGT+TGG | 0.454770 | 7.3:+29947269 | MS.gene42196:CDS |
| GCAACATGTCACATAGTTTG+TGG | 0.463824 | 7.3:-29945952 | None:intergenic |
| TTGGGTGAGATTTATGCTAA+TGG | 0.472566 | 7.3:+29947996 | MS.gene42196:CDS |
| AAAGATGATTGTAGTAGAGA+AGG | 0.475736 | 7.3:+29947486 | MS.gene42196:CDS |
| ATACTCCTGGCTTGAGGAAG+CGG | 0.479782 | 7.3:+29948201 | MS.gene42196:CDS |
| GATGCTATTTCTCGACCAAA+TGG | 0.486765 | 7.3:+29946409 | MS.gene42196:CDS |
| CACCTTAGTGAGTGGAGGAA+TGG | 0.492062 | 7.3:+29946604 | MS.gene42196:CDS |
| TGGCTTGCGTTGAAAATACA+AGG | 0.493139 | 7.3:+29945912 | MS.gene42196:CDS |
| ATCCATTCCTCCACTCACTA+AGG | 0.493857 | 7.3:-29946606 | None:intergenic |
| CACCCAAAACCACTTGCACC+TGG | 0.494386 | 7.3:-29947451 | None:intergenic |
| TATATTCACAACAAATTCCC+AGG | 0.506595 | 7.3:+29947343 | MS.gene42196:CDS |
| AGAAGGAGATTTATCGTCAA+TGG | 0.515104 | 7.3:+29947503 | MS.gene42196:CDS |
| ATTTCCACACTATGATAGCT+TGG | 0.519974 | 7.3:+29947656 | MS.gene42196:CDS |
| TGAAGAAGATGGAGTATTGG+TGG | 0.524039 | 7.3:+29947237 | MS.gene42196:CDS |
| TCCTGAAGAAGATGGAGTAT+TGG | 0.524913 | 7.3:+29947234 | MS.gene42196:CDS |
| CAATGGACTCCTGAAGAAGA+TGG | 0.527689 | 7.3:+29947226 | MS.gene42196:CDS |
| TCACTCTTGATTCAATATGT+GGG | 0.528294 | 7.3:-29947384 | None:intergenic |
| GAAGATGGAGTATTGGTGGA+AGG | 0.531767 | 7.3:+29947241 | MS.gene42196:CDS |
| TCTGCAATCAAAGATATGTT+GGG | 0.532433 | 7.3:+29947427 | MS.gene42196:CDS |
| AGGTAGATATAGAACAAGGA+AGG | 0.535159 | 7.3:+29946282 | MS.gene42196:CDS |
| ATCAAAGATATGTTGGGTCC+AGG | 0.536960 | 7.3:+29947433 | MS.gene42196:CDS |
| ACAAACCGCTTCCTCAAGCC+AGG | 0.540000 | 7.3:-29948206 | None:intergenic |
| GGTCTGGTGAAACGATTAGT+AGG | 0.541722 | 7.3:+29946092 | MS.gene42196:CDS |
| TCCAAAGCTTTAGTGTACCC+AGG | 0.543054 | 7.3:-29947316 | None:intergenic |
| GTCTGATGAAGAAGTGGTAA+TGG | 0.546068 | 7.3:+29948124 | MS.gene42196:CDS |
| ACAACTAACACTACTGCTCC+GGG | 0.546071 | 7.3:+29947852 | MS.gene42196:CDS |
| ACGAGAAACACACAGCTGAT+AGG | 0.548293 | 7.3:+29948060 | MS.gene42196:CDS |
| ATTATAGGAACGGAAAGCGT+GGG | 0.548490 | 7.3:+29947913 | MS.gene42196:CDS |
| TTCTCTGATGAAGTCATGTC+CGG | 0.548643 | 7.3:+29946859 | MS.gene42196:CDS |
| TGTGATGCTGGATACATGAA+TGG | 0.550292 | 7.3:+29946544 | MS.gene42196:CDS |
| CATTGATATGACTATTGAGA+TGG | 0.551195 | 7.3:+29947728 | MS.gene42196:CDS |
| GATAAAGCAGATGGTACTGT+AGG | 0.551746 | 7.3:+29947696 | MS.gene42196:CDS |
| GGAGCAGTAGTGTTAGTTGT+GGG | 0.552884 | 7.3:-29947849 | None:intergenic |
| ATTAGTGGACGAGGGTTGGA+AGG | 0.552892 | 7.3:+29947273 | MS.gene42196:CDS |
| TCTCCTAAATTCATTTCCAA+AGG | 0.553553 | 7.3:-29946829 | None:intergenic |
| ATATGAAACATTCTTCAGCT+AGG | 0.555082 | 7.3:+29946659 | MS.gene42196:CDS |
| CACTCTTGATTCAATATGTG+GGG | 0.559793 | 7.3:-29947383 | None:intergenic |
| TTTGTTGAAATTAGTGGACG+AGG | 0.562026 | 7.3:+29947264 | MS.gene42196:CDS |
| GATGCAAACTCATTTAAACC+TGG | 0.563444 | 7.3:+29947298 | MS.gene42196:CDS |
| TCTTGATGGCACTTACATCA+AGG | 0.564289 | 7.3:+29946237 | MS.gene42196:CDS |
| AATTATAGGAACGGAAAGCG+TGG | 0.572400 | 7.3:+29947912 | MS.gene42196:CDS |
| GACATGTTGCAAGTTATTGG+TGG | 0.572683 | 7.3:+29945965 | MS.gene42196:CDS |
| TTACTCCTTATAGAGGTCAA+AGG | 0.573713 | 7.3:+29946578 | MS.gene42196:CDS |
| TAGTAGAATCACGTTGTGGT+TGG | 0.574703 | 7.3:-29947890 | None:intergenic |
| TATTCGCAAAGAAATGACAT+TGG | 0.576923 | 7.3:+29946804 | MS.gene42196:CDS |
| CACCGTAGTTATCATGTCAC+CGG | 0.578583 | 7.3:-29946878 | None:intergenic |
| CGGAGCAGTAGTGTTAGTTG+TGG | 0.579402 | 7.3:-29947850 | None:intergenic |
| ACACATGTGTGTGGAGGAGT+TGG | 0.585582 | 7.3:+29946003 | MS.gene42196:CDS |
| TTTGGAAAAGATAAAGCAGA+TGG | 0.586596 | 7.3:+29947687 | MS.gene42196:CDS |
| TGGTTTGTTGGATTTGAACC+CGG | 0.587761 | 7.3:-29947870 | None:intergenic |
| TTGTTGAAATTAGTGGACGA+GGG | 0.590054 | 7.3:+29947265 | MS.gene42196:CDS |
| TTACATCAAGGTCAATGTGC+CGG | 0.590931 | 7.3:+29946249 | MS.gene42196:CDS |
| TAAGAATCACAAAGCGACAA+TGG | 0.591726 | 7.3:+29947209 | MS.gene42196:CDS |
| GCAGCTGATCCCTCCCAACC+AGG | 0.594468 | 7.3:-29946367 | None:intergenic |
| ATGCAAACTCATTTAAACCT+GGG | 0.599381 | 7.3:+29947299 | MS.gene42196:CDS |
| ATGTTGGGTCCAGGTGCAAG+TGG | 0.603177 | 7.3:+29947442 | MS.gene42196:CDS |
| GATTCTACTAATTATAGGAA+CGG | 0.604046 | 7.3:+29947903 | MS.gene42196:CDS |
| CAATGGATACTCCTGGCTTG+AGG | 0.604084 | 7.3:+29948195 | MS.gene42196:CDS |
| GAGTTGTTGAATAGATGGAC+GGG | 0.607031 | 7.3:+29947167 | MS.gene42196:intron |
| GATGAAGAAGTGGTAATGGC+TGG | 0.607200 | 7.3:+29948128 | MS.gene42196:CDS |
| AATGGTTTAAAGGTTCCTCA+AGG | 0.609493 | 7.3:+29946427 | MS.gene42196:CDS |
| TATGACTATTGAGATGGAGA+AGG | 0.615365 | 7.3:+29947734 | MS.gene42196:CDS |
| AAAGGTATCACCTTAGTGAG+TGG | 0.618563 | 7.3:+29946596 | MS.gene42196:CDS |
| GGTAGATATAGAACAAGGAA+GGG | 0.618775 | 7.3:+29946283 | MS.gene42196:CDS |
| AAATGTTCAATCAACACAAG+AGG | 0.626386 | 7.3:+29947758 | MS.gene42196:CDS |
| AGAAACACACAGCTGATAGG+AGG | 0.626406 | 7.3:+29948063 | MS.gene42196:CDS |
| GCTGGATACATGAATGGAGA+AGG | 0.632475 | 7.3:+29946550 | MS.gene42196:CDS |
| TGAGTTGTTGAATAGATGGA+CGG | 0.636038 | 7.3:+29947166 | MS.gene42196:intron |
| TCCTACTCGACACATGTGTG+TGG | 0.639193 | 7.3:+29945994 | MS.gene42196:CDS |
| GTCCGGTGACATGATAACTA+CGG | 0.641608 | 7.3:+29946876 | MS.gene42196:CDS |
| GGTATCACCTTAGTGAGTGG+AGG | 0.642466 | 7.3:+29946599 | MS.gene42196:CDS |
| AGGATTGTCTGATGAAGAAG+TGG | 0.642904 | 7.3:+29948118 | MS.gene42196:CDS |
| TTATAGGAACGGAAAGCGTG+GGG | 0.650988 | 7.3:+29947914 | MS.gene42196:CDS |
| TACTCGACACATGTGTGTGG+AGG | 0.653616 | 7.3:+29945997 | MS.gene42196:CDS |
| AATGTTCAATCAACACAAGA+GGG | 0.654380 | 7.3:+29947759 | MS.gene42196:CDS |
| TTGCGTTGAAAATACAAGGA+TGG | 0.654392 | 7.3:+29945916 | MS.gene42196:CDS |
| AGGGCAACACAGACGAACGA+TGG | 0.667738 | 7.3:+29946188 | MS.gene42196:CDS |
| GTATCCAAGCTATCATAGTG+TGG | 0.667913 | 7.3:-29947660 | None:intergenic |
| TAATTAGTAGAATCACGTTG+TGG | 0.667964 | 7.3:-29947894 | None:intergenic |
| TCCACACACATGTGTCGAGT+AGG | 0.675300 | 7.3:-29945995 | None:intergenic |
| AATGTGCCGGAAGCTGACAA+AGG | 0.679136 | 7.3:+29946262 | MS.gene42196:CDS |
| ACAAAGGTAGATATAGAACA+AGG | 0.691343 | 7.3:+29946278 | MS.gene42196:CDS |
| GTTCAATCAACACAAGAGGG+CGG | 0.700627 | 7.3:+29947762 | MS.gene42196:CDS |
| TATAGGAACGGAAAGCGTGG+GGG | 0.729484 | 7.3:+29947915 | MS.gene42196:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCATTAGATATATTTAAT+AGG | + | chr7.3:29946938-29946957 | MS.gene42196:intron | 10.0% |
| !!! | AAATACTTTAAAAATTGTTT+AGG | + | chr7.3:29946211-29946230 | MS.gene42196:CDS | 10.0% |
| !! | TTCATATTGAAAAATTCTTT+AGG | - | chr7.3:29946646-29946665 | None:intergenic | 15.0% |
| !!! | ACTTCAATTTTATTTATGAT+AGG | + | chr7.3:29946508-29946527 | MS.gene42196:intron | 15.0% |
| !!! | CTTCAATTTTATTTATGATA+GGG | + | chr7.3:29946509-29946528 | MS.gene42196:intron | 15.0% |
| !!! | TCTATTTTAAAAGAAATTGA+AGG | + | chr7.3:29948098-29948117 | MS.gene42196:CDS | 15.0% |
| !! | ACATATATGAATTGTAAATC+TGG | - | chr7.3:29946343-29946362 | None:intergenic | 20.0% |
| !! | CATTAGATATATTTAATAGG+TGG | + | chr7.3:29946941-29946960 | MS.gene42196:intron | 20.0% |
| !! | TATCATGAATTTATCAATTG+TGG | - | chr7.3:29947555-29947574 | None:intergenic | 20.0% |
| !! | TATTATTATTTATGTGATGC+TGG | + | chr7.3:29946532-29946551 | MS.gene42196:CDS | 20.0% |
| !! | TCAAATTCATTGAACAAATT+GGG | + | chr7.3:29947978-29947997 | MS.gene42196:CDS | 20.0% |
| !!! | AATGTAATAGAAAGATGTTT+TGG | + | chr7.3:29946682-29946701 | MS.gene42196:CDS | 20.0% |
| !!! | CTTTTAAAATAGAGACAATT+TGG | - | chr7.3:29948091-29948110 | None:intergenic | 20.0% |
| ! | AACGTGATTCTACTAATTAT+AGG | + | chr7.3:29947898-29947917 | MS.gene42196:CDS | 25.0% |
| ! | GATTCTACTAATTATAGGAA+CGG | + | chr7.3:29947903-29947922 | MS.gene42196:CDS | 25.0% |
| ! | GCATTTCAGTAATGTATTAT+TGG | + | chr7.3:29946114-29946133 | MS.gene42196:CDS | 25.0% |
| ! | GTCAAATTCATTGAACAAAT+TGG | + | chr7.3:29947977-29947996 | MS.gene42196:CDS | 25.0% |
| ! | TGCCAATATATGTAAAAACA+TGG | - | chr7.3:29946032-29946051 | None:intergenic | 25.0% |
| !! | AAAAATTCTTTAGGAGTAGA+TGG | - | chr7.3:29946637-29946656 | None:intergenic | 25.0% |
| !! | AAAACAACCTAAACCAATTT+TGG | + | chr7.3:29946165-29946184 | MS.gene42196:CDS | 25.0% |
| !! | AGCATATTTTGCATAGTTTA+TGG | + | chr7.3:29946479-29946498 | MS.gene42196:intron | 25.0% |
| !! | ATTTATACTTTTGTACCTTG+AGG | - | chr7.3:29946445-29946464 | None:intergenic | 25.0% |
| !! | TGATTAGAAGACAATTTGTT+AGG | + | chr7.3:29946071-29946090 | MS.gene42196:CDS | 25.0% |
| !! | TTTTATCCTGTAAAAACTCA+AGG | + | chr7.3:29946745-29946764 | MS.gene42196:CDS | 25.0% |
| !!! | GGAAATGGTTTTTTATACAA+GGG | - | chr7.3:29947642-29947661 | None:intergenic | 25.0% |
| !!! | TGGAAATGGTTTTTTATACA+AGG | - | chr7.3:29947643-29947662 | None:intergenic | 25.0% |
| AAAGATGATTGTAGTAGAGA+AGG | + | chr7.3:29947486-29947505 | MS.gene42196:CDS | 30.0% | |
| AAATGTTCAATCAACACAAG+AGG | + | chr7.3:29947758-29947777 | MS.gene42196:CDS | 30.0% | |
| AATGTTCAATCAACACAAGA+GGG | + | chr7.3:29947759-29947778 | MS.gene42196:CDS | 30.0% | |
| ACAAAGGTAGATATAGAACA+AGG | + | chr7.3:29946278-29946297 | MS.gene42196:CDS | 30.0% | |
| ATATGAAACATTCTTCAGCT+AGG | + | chr7.3:29946659-29946678 | MS.gene42196:CDS | 30.0% | |
| ATGCAAACTCATTTAAACCT+GGG | + | chr7.3:29947299-29947318 | MS.gene42196:CDS | 30.0% | |
| CATTGATATGACTATTGAGA+TGG | + | chr7.3:29947728-29947747 | MS.gene42196:CDS | 30.0% | |
| GATATATTTAATAGGTGGAG+AGG | + | chr7.3:29946946-29946965 | MS.gene42196:intron | 30.0% | |
| TAATTAGTAGAATCACGTTG+TGG | - | chr7.3:29947897-29947916 | None:intergenic | 30.0% | |
| TATATTCACAACAAATTCCC+AGG | + | chr7.3:29947343-29947362 | MS.gene42196:CDS | 30.0% | |
| TATTCGCAAAGAAATGACAT+TGG | + | chr7.3:29946804-29946823 | MS.gene42196:CDS | 30.0% | |
| TCACTCTTGATTCAATATGT+GGG | - | chr7.3:29947387-29947406 | None:intergenic | 30.0% | |
| TCTCCTAAATTCATTTCCAA+AGG | - | chr7.3:29946832-29946851 | None:intergenic | 30.0% | |
| TCTGCAATCAAAGATATGTT+GGG | + | chr7.3:29947427-29947446 | MS.gene42196:CDS | 30.0% | |
| TTCACTCTTGATTCAATATG+TGG | - | chr7.3:29947388-29947407 | None:intergenic | 30.0% | |
| TTCTGCAATCAAAGATATGT+TGG | + | chr7.3:29947426-29947445 | MS.gene42196:CDS | 30.0% | |
| TTGTGAAAAAATAGTCGCAA+AGG | - | chr7.3:29948178-29948197 | None:intergenic | 30.0% | |
| TTTGGAAAAGATAAAGCAGA+TGG | + | chr7.3:29947687-29947706 | MS.gene42196:CDS | 30.0% | |
| ! | ATTCTTCCTTGAGTTTTTAC+AGG | - | chr7.3:29946754-29946773 | None:intergenic | 30.0% |
| ! | CAATTCATATATGTTTTGCC+TGG | + | chr7.3:29946349-29946368 | MS.gene42196:CDS | 30.0% |
| ! | GATCCTTTGGAAATGAATTT+AGG | + | chr7.3:29946826-29946845 | MS.gene42196:CDS | 30.0% |
| ! | TTGTTGAGTTGTTGAATAGA+TGG | + | chr7.3:29947162-29947181 | MS.gene42196:intron | 30.0% |
| !! | AGATGTTTTGGACTTTTGAA+AGG | + | chr7.3:29946694-29946713 | MS.gene42196:CDS | 30.0% |
| !! | CGCCATGTTTTTACATATAT+TGG | + | chr7.3:29946027-29946046 | MS.gene42196:CDS | 30.0% |
| !! | TTTTGAGTAACAATGGTTCT+AGG | + | chr7.3:29948237-29948256 | MS.gene42196:CDS | 30.0% |
| !!! | AATGGTTTTTTATACAAGGG+CGG | - | chr7.3:29947639-29947658 | None:intergenic | 30.0% |
| !!! | GACATTGTTTTGAGTAACAA+TGG | + | chr7.3:29948230-29948249 | MS.gene42196:CDS | 30.0% |
| !!! | TTGCGACTATTTTTTCACAA+TGG | + | chr7.3:29948178-29948197 | MS.gene42196:CDS | 30.0% |
| AAGCTATCATAGTGTGGAAA+TGG | - | chr7.3:29947657-29947676 | None:intergenic | 35.0% | |
| AATGGTTTAAAGGTTCCTCA+AGG | + | chr7.3:29946427-29946446 | MS.gene42196:CDS | 35.0% | |
| AATTGTTTAGGAGCTCTTGA+TGG | + | chr7.3:29946223-29946242 | MS.gene42196:CDS | 35.0% | |
| AGAAATGACATTGGATCCTT+TGG | + | chr7.3:29946813-29946832 | MS.gene42196:CDS | 35.0% | |
| AGAAGGAGATTTATCGTCAA+TGG | + | chr7.3:29947503-29947522 | MS.gene42196:CDS | 35.0% | |
| AGGTAGATATAGAACAAGGA+AGG | + | chr7.3:29946282-29946301 | MS.gene42196:CDS | 35.0% | |
| ATATTTAATAGGTGGAGAGG+TGG | + | chr7.3:29946949-29946968 | MS.gene42196:intron | 35.0% | |
| ATTTCCACACTATGATAGCT+TGG | + | chr7.3:29947656-29947675 | MS.gene42196:CDS | 35.0% | |
| CACTCTTGATTCAATATGTG+GGG | - | chr7.3:29947386-29947405 | None:intergenic | 35.0% | |
| GAGATAGCTACAAATGTGTT+AGG | + | chr7.3:29946307-29946326 | MS.gene42196:CDS | 35.0% | |
| GATAGCTTGGATACTGTATT+TGG | + | chr7.3:29947669-29947688 | MS.gene42196:CDS | 35.0% | |
| GATGCAAACTCATTTAAACC+TGG | + | chr7.3:29947298-29947317 | MS.gene42196:CDS | 35.0% | |
| GGATTTCTTACTCCTTATAG+AGG | + | chr7.3:29946571-29946590 | MS.gene42196:CDS | 35.0% | |
| GGTAGATATAGAACAAGGAA+GGG | + | chr7.3:29946283-29946302 | MS.gene42196:CDS | 35.0% | |
| TAAGAATCACAAAGCGACAA+TGG | + | chr7.3:29947209-29947228 | MS.gene42196:CDS | 35.0% | |
| TATGACTATTGAGATGGAGA+AGG | + | chr7.3:29947734-29947753 | MS.gene42196:CDS | 35.0% | |
| TGAGGAACCTTTAAACCATT+TGG | - | chr7.3:29946427-29946446 | None:intergenic | 35.0% | |
| TGAGTTGTTGAATAGATGGA+CGG | + | chr7.3:29947166-29947185 | MS.gene42196:intron | 35.0% | |
| TGATACCTTTGACCTCTATA+AGG | - | chr7.3:29946586-29946605 | None:intergenic | 35.0% | |
| TGTGACATGTTGCAAGTTAT+TGG | + | chr7.3:29945962-29945981 | MS.gene42196:CDS | 35.0% | |
| TTACTCCTTATAGAGGTCAA+AGG | + | chr7.3:29946578-29946597 | MS.gene42196:CDS | 35.0% | |
| TTCTCGACCAAATGGTTTAA+AGG | + | chr7.3:29946417-29946436 | MS.gene42196:CDS | 35.0% | |
| TTGCGTTGAAAATACAAGGA+TGG | + | chr7.3:29945916-29945935 | MS.gene42196:CDS | 35.0% | |
| TTGGGTGAGATTTATGCTAA+TGG | + | chr7.3:29947996-29948015 | MS.gene42196:CDS | 35.0% | |
| ! | ACAACCTAAACCAATTTTGG+AGG | + | chr7.3:29946168-29946187 | MS.gene42196:CDS | 35.0% |
| ! | CAACCTAAACCAATTTTGGA+GGG | + | chr7.3:29946169-29946188 | MS.gene42196:CDS | 35.0% |
| ! | CATATATGTTTTGCCTGGTT+GGG | + | chr7.3:29946354-29946373 | MS.gene42196:CDS | 35.0% |
| ! | TCATATATGTTTTGCCTGGT+TGG | + | chr7.3:29946353-29946372 | MS.gene42196:CDS | 35.0% |
| ! | TTGTTGAAATTAGTGGACGA+GGG | + | chr7.3:29947265-29947284 | MS.gene42196:CDS | 35.0% |
| ! | TTTGTTGAAATTAGTGGACG+AGG | + | chr7.3:29947264-29947283 | MS.gene42196:CDS | 35.0% |
| ! | TTTTTCACAATGGATACTCC+TGG | + | chr7.3:29948188-29948207 | MS.gene42196:CDS | 35.0% |
| !! | AGAAGACAATTTGTTAGGTC+TGG | + | chr7.3:29946076-29946095 | MS.gene42196:CDS | 35.0% |
| !! | GGAAGGTTTGTTGAAATTAG+TGG | + | chr7.3:29947258-29947277 | MS.gene42196:CDS | 35.0% |
| !!! | TTTTTTATACAAGGGCGGTA+GGG | - | chr7.3:29947634-29947653 | None:intergenic | 35.0% |
| AATTATAGGAACGGAAAGCG+TGG | + | chr7.3:29947912-29947931 | MS.gene42196:CDS | 40.0% | |
| ACCAATACTCCATCTTCTTC+AGG | - | chr7.3:29947238-29947257 | None:intergenic | 40.0% | |
| AGGATTGTCTGATGAAGAAG+TGG | + | chr7.3:29948118-29948137 | MS.gene42196:CDS | 40.0% | |
| ATCAAAGATATGTTGGGTCC+AGG | + | chr7.3:29947433-29947452 | MS.gene42196:CDS | 40.0% | |
| GACATGTTGCAAGTTATTGG+TGG | + | chr7.3:29945965-29945984 | MS.gene42196:CDS | 40.0% | |
| GAGTTGTTGAATAGATGGAC+GGG | + | chr7.3:29947167-29947186 | MS.gene42196:intron | 40.0% | |
| GATAAAGCAGATGGTACTGT+AGG | + | chr7.3:29947696-29947715 | MS.gene42196:CDS | 40.0% | |
| GATTTATCGTCAATGGTGCA+AGG | + | chr7.3:29947510-29947529 | MS.gene42196:intron | 40.0% | |
| GCAACATGTCACATAGTTTG+TGG | - | chr7.3:29945955-29945974 | None:intergenic | 40.0% | |
| GTATCCAAGCTATCATAGTG+TGG | - | chr7.3:29947663-29947682 | None:intergenic | 40.0% | |
| GTCGAGAAATAGCATCTCTA+AGG | - | chr7.3:29946405-29946424 | None:intergenic | 40.0% | |
| GTCGCAAAGGTTATTGTCTT+TGG | - | chr7.3:29948165-29948184 | None:intergenic | 40.0% | |
| GTCTGATGAAGAAGTGGTAA+TGG | + | chr7.3:29948124-29948143 | MS.gene42196:CDS | 40.0% | |
| TAGTAGAATCACGTTGTGGT+TGG | - | chr7.3:29947893-29947912 | None:intergenic | 40.0% | |
| TATCTACCTTTGTCAGCTTC+CGG | - | chr7.3:29946271-29946290 | None:intergenic | 40.0% | |
| TCCTGAAGAAGATGGAGTAT+TGG | + | chr7.3:29947234-29947253 | MS.gene42196:CDS | 40.0% | |
| TGTGATGCTGGATACATGAA+TGG | + | chr7.3:29946544-29946563 | MS.gene42196:CDS | 40.0% | |
| TTACATCAAGGTCAATGTGC+CGG | + | chr7.3:29946249-29946268 | MS.gene42196:CDS | 40.0% | |
| TTCTCTGATGAAGTCATGTC+CGG | + | chr7.3:29946859-29946878 | MS.gene42196:CDS | 40.0% | |
| ! | ATTATAGGAACGGAAAGCGT+GGG | + | chr7.3:29947913-29947932 | MS.gene42196:CDS | 40.0% |
| ! | TAGCTTTTAGTGTGCAACCT+GGG | - | chr7.3:29947363-29947382 | None:intergenic | 40.0% |
| ! | TCTTGATGGCACTTACATCA+AGG | + | chr7.3:29946237-29946256 | MS.gene42196:CDS | 40.0% |
| ! | TGGCTTGCGTTGAAAATACA+AGG | + | chr7.3:29945912-29945931 | MS.gene42196:CDS | 40.0% |
| ! | TTGCCCTCCAAAATTGGTTT+AGG | - | chr7.3:29946175-29946194 | None:intergenic | 40.0% |
| !! | AAAGGTATCACCTTAGTGAG+TGG | + | chr7.3:29946596-29946615 | MS.gene42196:CDS | 40.0% |
| !! | GATGCTATTTCTCGACCAAA+TGG | + | chr7.3:29946409-29946428 | MS.gene42196:CDS | 40.0% |
| !! | TGAAGAAGATGGAGTATTGG+TGG | + | chr7.3:29947237-29947256 | MS.gene42196:CDS | 40.0% |
| !! | TGGACTTTTGAAAGGACGTT+GGG | + | chr7.3:29946702-29946721 | MS.gene42196:CDS | 40.0% |
| !! | TGGTTTGTTGGATTTGAACC+CGG | - | chr7.3:29947873-29947892 | None:intergenic | 40.0% |
| !! | TTGGACTTTTGAAAGGACGT+TGG | + | chr7.3:29946701-29946720 | MS.gene42196:CDS | 40.0% |
| !!! | GTTTTTTATACAAGGGCGGT+AGG | - | chr7.3:29947635-29947654 | None:intergenic | 40.0% |
| ACAACTAACACTACTGCTCC+GGG | + | chr7.3:29947852-29947871 | MS.gene42196:CDS | 45.0% | |
| ACCTGGGTACACTAAAGCTT+TGG | + | chr7.3:29947315-29947334 | MS.gene42196:CDS | 45.0% | |
| ACGAGAAACACACAGCTGAT+AGG | + | chr7.3:29948060-29948079 | MS.gene42196:CDS | 45.0% | |
| AGAAACACACAGCTGATAGG+AGG | + | chr7.3:29948063-29948082 | MS.gene42196:CDS | 45.0% | |
| ATCCATTCCTCCACTCACTA+AGG | - | chr7.3:29946609-29946628 | None:intergenic | 45.0% | |
| CAAGTACGACATGGAGTCAA+TGG | + | chr7.3:29946905-29946924 | MS.gene42196:intron | 45.0% | |
| CACAACTAACACTACTGCTC+CGG | + | chr7.3:29947851-29947870 | MS.gene42196:CDS | 45.0% | |
| CACCGTAGTTATCATGTCAC+CGG | - | chr7.3:29946881-29946900 | None:intergenic | 45.0% | |
| GCTGGATACATGAATGGAGA+AGG | + | chr7.3:29946550-29946569 | MS.gene42196:CDS | 45.0% | |
| GGAGCAGTAGTGTTAGTTGT+GGG | - | chr7.3:29947852-29947871 | None:intergenic | 45.0% | |
| GGTCTGGTGAAACGATTAGT+AGG | + | chr7.3:29946092-29946111 | MS.gene42196:CDS | 45.0% | |
| GTCCGGTGACATGATAACTA+CGG | + | chr7.3:29946876-29946895 | MS.gene42196:CDS | 45.0% | |
| GTGTTAGTTGTGGGTGTTTC+TGG | - | chr7.3:29947843-29947862 | None:intergenic | 45.0% | |
| GTTCAATCAACACAAGAGGG+CGG | + | chr7.3:29947762-29947781 | MS.gene42196:CDS | 45.0% | |
| TCTGTGTTGCCCTCCAAAAT+TGG | - | chr7.3:29946181-29946200 | None:intergenic | 45.0% | |
| ! | ATATGTTTTGCCTGGTTGGG+AGG | + | chr7.3:29946357-29946376 | MS.gene42196:CDS | 45.0% |
| ! | CAATGGACTCCTGAAGAAGA+TGG | + | chr7.3:29947226-29947245 | MS.gene42196:CDS | 45.0% |
| ! | GTAGCTTTTAGTGTGCAACC+TGG | - | chr7.3:29947364-29947383 | None:intergenic | 45.0% |
| ! | TATGTTTTGCCTGGTTGGGA+GGG | + | chr7.3:29946358-29946377 | MS.gene42196:CDS | 45.0% |
| ! | TCCAAAGCTTTAGTGTACCC+AGG | - | chr7.3:29947319-29947338 | None:intergenic | 45.0% |
| ! | TGAAATTAGTGGACGAGGGT+TGG | + | chr7.3:29947269-29947288 | MS.gene42196:CDS | 45.0% |
| ! | TTATAGGAACGGAAAGCGTG+GGG | + | chr7.3:29947914-29947933 | MS.gene42196:CDS | 45.0% |
| !! | CATTGACTCCATGTCGTACT+TGG | - | chr7.3:29946907-29946926 | None:intergenic | 45.0% |
| !! | GAAGATGGAGTATTGGTGGA+AGG | + | chr7.3:29947241-29947260 | MS.gene42196:CDS | 45.0% |
| !! | GATGAAGAAGTGGTAATGGC+TGG | + | chr7.3:29948128-29948147 | MS.gene42196:CDS | 45.0% |
| !! | TCACGTTGTGGTTGGTTTGT+TGG | - | chr7.3:29947885-29947904 | None:intergenic | 45.0% |
| AATGTGCCGGAAGCTGACAA+AGG | + | chr7.3:29946262-29946281 | MS.gene42196:CDS | 50.0% | |
| ACACATGTGTGTGGAGGAGT+TGG | + | chr7.3:29946003-29946022 | MS.gene42196:CDS | 50.0% | |
| CACCTTAGTGAGTGGAGGAA+TGG | + | chr7.3:29946604-29946623 | MS.gene42196:CDS | 50.0% | |
| CGGAGCAGTAGTGTTAGTTG+TGG | - | chr7.3:29947853-29947872 | None:intergenic | 50.0% | |
| CGGTGACATGATAACTACGG+TGG | + | chr7.3:29946879-29946898 | MS.gene42196:intron | 50.0% | |
| GGTATCACCTTAGTGAGTGG+AGG | + | chr7.3:29946599-29946618 | MS.gene42196:CDS | 50.0% | |
| GTAGGGTGAGACTGCGTTAA+AGG | - | chr7.3:29947617-29947636 | None:intergenic | 50.0% | |
| TACTCGACACATGTGTGTGG+AGG | + | chr7.3:29945997-29946016 | MS.gene42196:CDS | 50.0% | |
| TCCACACACATGTGTCGAGT+AGG | - | chr7.3:29945998-29946017 | None:intergenic | 50.0% | |
| TCCTACTCGACACATGTGTG+TGG | + | chr7.3:29945994-29946013 | MS.gene42196:CDS | 50.0% | |
| ! | ATACTCCTGGCTTGAGGAAG+CGG | + | chr7.3:29948201-29948220 | MS.gene42196:CDS | 50.0% |
| ! | ATTAGTGGACGAGGGTTGGA+AGG | + | chr7.3:29947273-29947292 | MS.gene42196:CDS | 50.0% |
| ! | CAATGGATACTCCTGGCTTG+AGG | + | chr7.3:29948195-29948214 | MS.gene42196:CDS | 50.0% |
| ! | GTCCAGGTGCAAGTGGTTTT+GGG | + | chr7.3:29947449-29947468 | MS.gene42196:CDS | 50.0% |
| ! | TATAGGAACGGAAAGCGTGG+GGG | + | chr7.3:29947915-29947934 | MS.gene42196:CDS | 50.0% |
| ACAAACCGCTTCCTCAAGCC+AGG | - | chr7.3:29948209-29948228 | None:intergenic | 55.0% | |
| AGGGCAACACAGACGAACGA+TGG | + | chr7.3:29946188-29946207 | MS.gene42196:CDS | 55.0% | |
| ATGTTGGGTCCAGGTGCAAG+TGG | + | chr7.3:29947442-29947461 | MS.gene42196:CDS | 55.0% | |
| CACCCAAAACCACTTGCACC+TGG | - | chr7.3:29947454-29947473 | None:intergenic | 55.0% | |
| TCAACACAAGAGGGCGGATC+AGG | + | chr7.3:29947768-29947787 | MS.gene42196:CDS | 55.0% | |
| TGGCTTGAGGAAGCGGTTTG+TGG | + | chr7.3:29948208-29948227 | MS.gene42196:CDS | 55.0% | |
| ! | ACGGAAAGCGTGGGGGAAAA+AGG | + | chr7.3:29947922-29947941 | MS.gene42196:CDS | 55.0% |
| ! | CGGAAAGCGTGGGGGAAAAA+GGG | + | chr7.3:29947923-29947942 | MS.gene42196:CDS | 55.0% |
| ! | GGTCCAGGTGCAAGTGGTTT+TGG | + | chr7.3:29947448-29947467 | MS.gene42196:CDS | 55.0% |
| !!! | CAGGTGCAAGTGGTTTTGGG+TGG | + | chr7.3:29947452-29947471 | MS.gene42196:CDS | 55.0% |
| CGGTGGAGCCAAGTACGACA+TGG | + | chr7.3:29946896-29946915 | MS.gene42196:intron | 60.0% | |
| GCAGCTGATCCCTCCCAACC+AGG | - | chr7.3:29946370-29946389 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 29945902 | 29948262 | 29945902 | ID=MS.gene42196 |
| chr7.3 | mRNA | 29945902 | 29948262 | 29945902 | ID=MS.gene42196.t1;Parent=MS.gene42196 |
| chr7.3 | exon | 29945902 | 29946448 | 29945902 | ID=MS.gene42196.t1.exon1;Parent=MS.gene42196.t1 |
| chr7.3 | CDS | 29945902 | 29946448 | 29945902 | ID=cds.MS.gene42196.t1;Parent=MS.gene42196.t1 |
| chr7.3 | exon | 29946530 | 29946897 | 29946530 | ID=MS.gene42196.t1.exon2;Parent=MS.gene42196.t1 |
| chr7.3 | CDS | 29946530 | 29946897 | 29946530 | ID=cds.MS.gene42196.t1;Parent=MS.gene42196.t1 |
| chr7.3 | exon | 29947181 | 29947524 | 29947181 | ID=MS.gene42196.t1.exon3;Parent=MS.gene42196.t1 |
| chr7.3 | CDS | 29947181 | 29947524 | 29947181 | ID=cds.MS.gene42196.t1;Parent=MS.gene42196.t1 |
| chr7.3 | exon | 29947626 | 29948262 | 29947626 | ID=MS.gene42196.t1.exon4;Parent=MS.gene42196.t1 |
| chr7.3 | CDS | 29947626 | 29948262 | 29947626 | ID=cds.MS.gene42196.t1;Parent=MS.gene42196.t1 |
| Gene Sequence |
| Protein sequence |
