AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene42205

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42205.t1 MTR_7g075840 99.045 628 6 0 6 633 40 667 0.0 1297
MS.gene42205.t1 MTR_8g033360 82.462 593 100 3 6 594 5 597 0.0 1014
MS.gene42205.t1 MTR_3g107930 59.802 607 227 5 39 628 57 663 0.0 733
MS.gene42205.t1 MTR_3g107930 66.031 524 176 1 107 628 63 586 0.0 731
MS.gene42205.t1 MTR_2g027740 59.961 512 200 3 118 629 160 666 0.0 656
MS.gene42205.t1 MTR_8g092000 58.547 468 189 1 163 630 118 580 0.0 597
MS.gene42205.t1 MTR_2g015550 48.069 466 233 5 169 628 70 532 7.83e-163 477
MS.gene42205.t1 MTR_7g055600 57.421 411 169 4 223 629 25 433 1.23e-159 465
MS.gene42205.t1 MTR_7g057530 57.421 411 169 4 223 629 25 433 1.23e-159 465
MS.gene42205.t1 MTR_4g109890 46.667 495 245 7 144 629 51 535 4.22e-158 465
MS.gene42205.t1 MTR_2g461670 47.312 465 237 5 169 628 128 589 3.09e-156 462
MS.gene42205.t1 MTR_7g096160 47.186 462 216 3 170 628 216 652 7.95e-154 458
MS.gene42205.t1 MTR_6g016380 48.408 471 223 8 178 629 85 554 1.34e-147 439
MS.gene42205.t1 MTR_2g006790 42.918 466 233 6 169 628 70 508 2.63e-134 403
MS.gene42205.t1 MTR_1g070490 42.251 471 240 7 165 630 156 599 1.68e-125 384
MS.gene42205.t1 MTR_2g082650 41.951 410 219 5 238 628 1 410 1.65e-115 351
MS.gene42205.t1 MTR_7g012370 42.623 427 209 8 215 617 110 524 1.54e-114 354
MS.gene42205.t1 MTR_2g082650 41.346 416 225 5 232 628 124 539 3.88e-114 352
MS.gene42205.t1 MTR_6g013840 44.365 417 213 5 233 630 116 532 2.32e-112 347
MS.gene42205.t1 MTR_4g133570 40.874 389 211 4 259 628 74 462 2.29e-104 324
MS.gene42205.t1 MTR_3g452360 38.462 442 236 11 209 628 101 528 6.12e-95 302
MS.gene42205.t1 MTR_3g452360 39.426 383 210 7 263 628 2 379 3.37e-92 290
MS.gene42205.t1 MTR_7g074680 34.440 482 286 6 156 628 103 563 2.60e-84 275
MS.gene42205.t1 MTR_7g074680 34.440 482 286 6 156 628 143 603 9.91e-84 275
MS.gene42205.t1 MTR_7g074680 34.440 482 286 6 156 628 163 623 1.46e-83 275
MS.gene42205.t1 MTR_7g074680 34.440 482 286 6 156 628 163 623 1.54e-83 275
MS.gene42205.t1 MTR_7g074680 34.440 482 286 6 156 628 183 643 1.75e-83 275
MS.gene42205.t1 MTR_7g012370 42.025 326 162 6 233 536 121 441 1.56e-81 265
MS.gene42205.t1 MTR_7g074680 33.267 499 286 7 156 628 183 660 4.31e-80 266
MS.gene42205.t1 MTR_4g133942 57.000 200 56 3 432 628 160 332 5.23e-68 225
MS.gene42205.t1 MTR_4g133942 46.667 75 35 1 171 245 61 130 2.57e-11 65.9
MS.gene42205.t1 MTR_6g008900 24.776 335 201 12 307 620 64 368 1.37e-20 94.4
MS.gene42205.t1 MTR_4g071620 24.776 335 201 12 307 620 64 368 1.37e-20 94.4
MS.gene42205.t1 MTR_4g118030 26.800 250 148 7 388 603 72 320 1.59e-19 90.9
MS.gene42205.t1 MTR_7g109210 29.231 195 130 4 434 620 159 353 1.67e-19 90.9
MS.gene42205.t1 MTR_7g094230 29.714 175 118 3 434 603 151 325 1.68e-19 90.9
MS.gene42205.t1 MTR_3g092310 29.648 199 124 5 434 620 140 334 3.89e-19 89.7
MS.gene42205.t1 MTR_3g111600 26.768 198 136 5 434 622 80 277 2.75e-17 83.2
MS.gene42205.t1 MTR_5g036580 24.545 330 202 12 304 618 62 359 4.56e-17 84.0
MS.gene42205.t1 MTR_8g078240 27.461 193 129 5 434 615 142 334 9.67e-17 82.4
MS.gene42205.t1 MTR_1g021855 28.141 199 133 5 434 622 165 363 1.35e-16 82.4
MS.gene42205.t1 MTR_5g019220 27.778 198 134 5 434 622 166 363 5.97e-15 77.4
MS.gene42205.t1 MTR_1g089820 29.143 175 119 3 434 603 154 328 9.49e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42205.t1 AT3G61130 75.517 629 151 3 4 630 46 673 0.0 1000
MS.gene42205.t1 AT4G38270 63.208 530 189 2 107 630 147 676 0.0 725
MS.gene42205.t1 AT4G38270 63.208 530 189 2 107 630 151 680 0.0 725
MS.gene42205.t1 AT2G46480 60.377 530 203 4 104 630 15 540 0.0 672
MS.gene42205.t1 AT2G46480 60.377 530 203 4 104 630 28 553 0.0 672
MS.gene42205.t1 AT5G47780 64.270 459 162 1 171 629 159 615 0.0 650
MS.gene42205.t1 AT2G46480 56.981 530 196 5 104 630 15 515 0.0 617
MS.gene42205.t1 AT2G46480 56.981 530 196 5 104 630 28 528 0.0 617
MS.gene42205.t1 AT3G25140 55.632 435 176 7 208 629 128 558 1.06e-168 493
MS.gene42205.t1 AT1G18580 48.614 469 229 4 166 626 70 534 4.21e-164 481
MS.gene42205.t1 AT2G20810 47.957 465 231 7 172 628 74 535 4.84e-152 449
MS.gene42205.t1 AT3G02350 52.174 437 201 5 200 629 125 560 9.44e-150 444
MS.gene42205.t1 AT2G30575 44.397 464 231 3 170 630 171 610 4.44e-144 432
MS.gene42205.t1 AT1G06780 44.372 462 231 2 170 628 149 587 1.85e-140 422
MS.gene42205.t1 AT1G06780 44.372 462 231 2 170 628 162 600 3.29e-140 422
MS.gene42205.t1 AT3G01040 45.215 418 210 5 232 630 115 532 4.11e-119 365
MS.gene42205.t1 AT3G01040 45.215 418 210 5 232 630 115 532 4.11e-119 365
MS.gene42205.t1 AT5G15470 45.564 417 208 5 233 630 116 532 6.15e-118 362
MS.gene42205.t1 AT5G54690 38.753 449 244 7 199 628 96 532 6.68e-111 343
MS.gene42205.t1 AT3G01040 42.344 418 189 6 232 630 115 499 2.19e-103 323
MS.gene42205.t1 AT2G38650 36.402 478 277 7 156 628 162 617 1.70e-98 314
MS.gene42205.t1 AT2G38650 36.402 478 277 7 156 628 162 617 1.70e-98 314
MS.gene42205.t1 AT3G58790 36.364 462 257 10 197 628 84 538 4.48e-89 287
MS.gene42205.t1 AT3G58790 38.119 404 224 7 247 628 7 406 9.42e-89 282
MS.gene42205.t1 AT2G38650 37.143 385 216 6 156 536 162 524 2.03e-76 253
MS.gene42205.t1 AT3G06260 30.857 175 116 3 434 603 150 324 5.29e-21 95.5
MS.gene42205.t1 AT4G02130 28.205 195 132 4 434 620 150 344 3.00e-20 93.2
MS.gene42205.t1 AT4G02130 28.205 195 132 4 434 620 150 344 3.00e-20 93.2
MS.gene42205.t1 AT4G02130 28.205 195 132 4 434 620 150 344 3.00e-20 93.2
MS.gene42205.t1 AT1G70090 28.571 196 131 5 434 620 169 364 6.79e-19 89.7
MS.gene42205.t1 AT1G70090 28.571 196 131 5 434 620 169 364 6.79e-19 89.7
MS.gene42205.t1 AT3G62660 27.179 195 134 4 434 620 164 358 1.26e-18 88.6
MS.gene42205.t1 AT1G02720 28.718 195 131 4 434 620 165 359 1.35e-18 88.6
MS.gene42205.t1 AT1G02720 28.718 195 131 4 434 620 165 359 1.35e-18 88.6
MS.gene42205.t1 AT3G28340 28.351 194 129 6 432 615 153 346 2.41e-18 87.8
MS.gene42205.t1 AT1G19300 27.778 198 134 5 434 622 150 347 2.27e-17 84.7
MS.gene42205.t1 AT1G24170 23.913 322 192 10 317 620 81 367 2.70e-16 81.6
MS.gene42205.t1 AT3G50760 26.396 197 136 4 432 619 134 330 6.75e-15 77.0
MS.gene42205.t1 AT1G13250 25.424 295 180 9 317 603 56 318 7.65e-13 70.9

Find 145 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTACTGATAAACTAAATTT+TGG 0.147550 7.3:+29905487 MS.gene42205:CDS
CAGCTTGTGCTTACCTCTTT+TGG 0.165480 7.3:-29903657 None:intergenic
TCTTGTCTAAGATGTGTTTC+TGG 0.168293 7.3:-29903989 None:intergenic
GTTCCCTATGACTGAGAATT+TGG 0.196098 7.3:+29905154 MS.gene42205:CDS
TCCACAAGTTTATCCGAAAT+TGG 0.201752 7.3:+29905747 MS.gene42205:CDS
GAAATAATCTTTCTGCTTCT+TGG 0.205764 7.3:+29903821 MS.gene42205:CDS
GACAGGGTACTATGGAAATT+AGG 0.250416 7.3:+29906376 MS.gene42205:CDS
TAAGCCGTGTTTGCAGTTCT+TGG 0.267033 7.3:-29904755 None:intergenic
TATGACTGCAAGTTGGTTAT+TGG 0.275774 7.3:+29904966 MS.gene42205:CDS
ATATCACAGGTGGCAGAATT+TGG 0.278377 7.3:+29906020 MS.gene42205:CDS
AGAAGGATTTGACTGGATTA+TGG 0.290586 7.3:+29905806 MS.gene42205:CDS
ACCCTTCTGGCTAGCCTTAC+GGG 0.301649 7.3:-29904147 None:intergenic
AAAAGAATCTTATCCAATTT+CGG 0.301889 7.3:-29905760 None:intergenic
AAAGAGAGTCAGCGTGCTTT+AGG 0.304821 7.3:+29904777 MS.gene42205:CDS
ATGGTTATACTTGACATATT+TGG 0.307908 7.3:-29906590 None:intergenic
CTGCTTCTTGGAGAGTTGTT+GGG 0.314790 7.3:+29903833 MS.gene42205:CDS
GAGAAGGAAGGAAGATCTTC+AGG 0.324973 7.3:+29904022 MS.gene42205:CDS
CCAGGGCTAATGACATTCTA+TGG 0.326202 7.3:+29906409 MS.gene42205:CDS
TCAGTTGATTCAGCAGTTCT+AGG 0.328896 7.3:+29904600 MS.gene42205:CDS
TCTGCTTCTTGGAGAGTTGT+TGG 0.331359 7.3:+29903832 MS.gene42205:CDS
CACCCTTCTGGCTAGCCTTA+CGG 0.339727 7.3:-29904148 None:intergenic
CCTATTCTCAGACAATGTTT+TGG 0.343893 7.3:+29905202 MS.gene42205:CDS
TGACAAAGTATCGTCCTTAC+TGG 0.346721 7.3:+29906566 MS.gene42205:CDS
CAAAACATTGTCTGAGAATA+GGG 0.349585 7.3:-29905201 None:intergenic
AATGGGCCAAGTTCTTTCTA+AGG 0.354321 7.3:+29904929 MS.gene42205:CDS
TCATGGCATGTACTCGGTTT+GGG 0.356589 7.3:+29906454 MS.gene42205:CDS
ATCATGGCATGTACTCGGTT+TGG 0.363039 7.3:+29906453 MS.gene42205:CDS
TGCCTTCTGTTCTCTCCATT+TGG 0.363246 7.3:-29903610 None:intergenic
TATGTCCAGCACGAATGATA+TGG 0.364399 7.3:+29903774 MS.gene42205:CDS
AAGAAGCAGAAAGATTATTT+CGG 0.364907 7.3:-29903819 None:intergenic
AGTATAACCATCCTTATCTT+AGG 0.371790 7.3:+29906602 MS.gene42205:CDS
CTTGTCTAAGATGTGTTTCT+GGG 0.373678 7.3:-29903988 None:intergenic
TTAACCAAATTCTCAGTCAT+AGG 0.376964 7.3:-29905158 None:intergenic
CCAAAACATTGTCTGAGAAT+AGG 0.379751 7.3:-29905202 None:intergenic
TTCTAGGTAAATACAACCTT+TGG 0.386455 7.3:+29904616 MS.gene42205:CDS
CTTTCGCCTTAGAAAGAACT+TGG 0.387580 7.3:-29904935 None:intergenic
TGGGAGGAGGTAGTAATCTA+TGG 0.391808 7.3:-29905117 None:intergenic
AGTTGGTTATTGGGAAAGTA+AGG 0.391814 7.3:+29904976 MS.gene42205:CDS
ATGACTGCAAGTTGGTTATT+GGG 0.393638 7.3:+29904967 MS.gene42205:CDS
AAGAATGATGCTCACCCTTC+TGG 0.396798 7.3:-29904160 None:intergenic
ACAGGGTACTATGGAAATTA+GGG 0.397082 7.3:+29906377 MS.gene42205:CDS
AATGAACATGTTTGATTTGA+AGG 0.399962 7.3:+29905969 MS.gene42205:CDS
GTCATTGCTATCTCTAACCA+TGG 0.402027 7.3:-29906547 None:intergenic
GCAGCAGTTGTACACTATAA+TGG 0.404766 7.3:+29906514 MS.gene42205:CDS
ACTGCTGATGAGCAGGTTAG+AGG 0.405243 7.3:+29905011 MS.gene42205:CDS
GGCTGCTGAGTTGGTACAAC+AGG 0.408103 7.3:+29904527 MS.gene42205:CDS
AATGAAAGAGTATTATTTCA+AGG 0.412072 7.3:+29905636 MS.gene42205:CDS
TTGAGCATTGAAAGATACTT+TGG 0.416508 7.3:-29905706 None:intergenic
AGAATGAAGACAGGGTACTA+TGG 0.423957 7.3:+29906368 MS.gene42205:intron
ATAATCCAGTCAAATCCTTC+TGG 0.433499 7.3:-29905804 None:intergenic
GACTTCAAACGCAACAAATC+AGG 0.442440 7.3:+29903861 MS.gene42205:CDS
AGCTTACAGTTCCTAAGATA+AGG 0.446048 7.3:-29906613 None:intergenic
TGATCCCAATGCTTGTGGTT+GGG 0.448672 7.3:+29905939 MS.gene42205:CDS
GATTCAAGCTGTCTCAAGAC+TGG 0.449905 7.3:-29905607 None:intergenic
AGTTAAGATATTTGTCGAAT+CGG 0.454272 7.3:-29905888 None:intergenic
GATAAGCAGTGAATTCCATT+TGG 0.456313 7.3:-29905083 None:intergenic
GATGCGAGATCAGATCATTA+TGG 0.457993 7.3:+29904683 MS.gene42205:CDS
ACATGCCATGATTTATTTAG+CGG 0.458664 7.3:-29906442 None:intergenic
AATTCCATTTGGTATGGTCT+TGG 0.460571 7.3:-29905072 None:intergenic
CTCCGATGTTACAAGCCAAC+AGG 0.462187 7.3:+29903488 MS.gene42205:CDS
AATGCTTGTGGTTGGGCATA+CGG 0.463683 7.3:+29905946 MS.gene42205:CDS
AGGTGAAACACATGCTTTGA+AGG 0.468782 7.3:-29905463 None:intergenic
ATGTCCAGCACGAATGATAT+GGG 0.468872 7.3:+29903775 MS.gene42205:CDS
TTGACATATTTGGTCCAGTA+AGG 0.471463 7.3:-29906580 None:intergenic
AAAGAGTATTATTTCAAGGC+AGG 0.473099 7.3:+29905640 MS.gene42205:CDS
TAGGTAAATACAACCTTTGG+AGG 0.475012 7.3:+29904619 MS.gene42205:CDS
AGAGAAAAGGATGGCAAAGC+GGG 0.478274 7.3:+29904506 MS.gene42205:CDS
TGCAGCAATTAATAGAGAAA+AGG 0.478481 7.3:+29904493 MS.gene42205:intron
TTATGGAATGTGGATCTTCA+TGG 0.483883 7.3:+29905823 MS.gene42205:CDS
TCCAATTTCGGATAAACTTG+TGG 0.484620 7.3:-29905748 None:intergenic
GATCTTCATGGAAAAGTTAA+CGG 0.487784 7.3:+29905835 MS.gene42205:CDS
CACATCCGCTAAATAAATCA+TGG 0.490767 7.3:+29906437 MS.gene42205:CDS
TTTGATTTCAGAATGAAGAC+AGG 0.492079 7.3:+29906359 MS.gene42205:intron
GGCAAAGCGGGCTGCTGAGT+TGG 0.492938 7.3:+29904518 MS.gene42205:CDS
GCTACAAACTGCTGATGAGC+AGG 0.495112 7.3:+29905004 MS.gene42205:CDS
TCTTGGCAGCCAACTGACTA+AGG 0.499672 7.3:-29905055 None:intergenic
TATGCCCAACCACAAGCATT+GGG 0.502397 7.3:-29905943 None:intergenic
CCATAGAATGTCATTAGCCC+TGG 0.504949 7.3:-29906409 None:intergenic
TAGGGCATAATGATAAAGAC+TGG 0.506359 7.3:-29905183 None:intergenic
TCTTAGACAAGAAGTTCAAA+AGG 0.513227 7.3:+29904000 MS.gene42205:CDS
GCAGGCCACCCATCCACTAC+TGG 0.513960 7.3:+29905658 MS.gene42205:CDS
ACATAGATTGTAGCTTTACC+AGG 0.515583 7.3:-29905541 None:intergenic
CTTGTGGAAGATAGAACCTC+AGG 0.518942 7.3:-29905732 None:intergenic
AAAATGTTGATGAATTTAAG+TGG 0.519458 7.3:+29905566 MS.gene42205:CDS
TGTAAGCTAAGTGAATGGTC+TGG 0.522229 7.3:+29906628 MS.gene42205:CDS
ATCTCCGTACGATCTATACT+TGG 0.524349 7.3:-29906484 None:intergenic
GTTGTCCAGAAGGATTTGAC+TGG 0.529202 7.3:+29905799 MS.gene42205:CDS
TTGATCCCAATGCTTGTGGT+TGG 0.532084 7.3:+29905938 MS.gene42205:CDS
GCAGTGAATTCCATTTGGTA+TGG 0.537356 7.3:-29905078 None:intergenic
AGGCCCCATATCATTCGTGC+TGG 0.538645 7.3:-29903779 None:intergenic
GTATGCCCAACCACAAGCAT+TGG 0.539148 7.3:-29905944 None:intergenic
CAGTCCAAGTATAGATCGTA+CGG 0.543562 7.3:+29906480 MS.gene42205:CDS
AAGCACATTCCTTAGTCAGT+TGG 0.552027 7.3:+29905046 MS.gene42205:CDS
GCTGCCAAGACCATACCAAA+TGG 0.554333 7.3:+29905068 MS.gene42205:CDS
AACTTTGATCCCAATGCTTG+TGG 0.555666 7.3:+29905934 MS.gene42205:CDS
AGAATGCTGATTCTACCGTT+CGG 0.555890 7.3:+29904658 MS.gene42205:CDS
AGATCAGATCATTATGGCTA+GGG 0.557672 7.3:+29904689 MS.gene42205:CDS
GGAGGTAGTAATCTATGGTA+AGG 0.557714 7.3:-29905112 None:intergenic
ACATTACTGGCATATATCAC+AGG 0.557897 7.3:+29906007 MS.gene42205:CDS
TAACCAAATTCTCAGTCATA+GGG 0.564966 7.3:-29905157 None:intergenic
ACAAGAAGTTCAAAAGGAGA+AGG 0.565190 7.3:+29904006 MS.gene42205:CDS
TCCCGTAAGGCTAGCCAGAA+GGG 0.568105 7.3:+29904146 MS.gene42205:CDS
GAGATCAGATCATTATGGCT+AGG 0.570674 7.3:+29904688 MS.gene42205:CDS
GTCCCGTAAGGCTAGCCAGA+AGG 0.574160 7.3:+29904145 MS.gene42205:CDS
AAATTAGGGACATTACCTCC+AGG 0.574173 7.3:+29906391 MS.gene42205:CDS
ACATGTTTGATTTGAAGGTG+TGG 0.576976 7.3:+29905974 MS.gene42205:CDS
AATAAATCATGGCATGTACT+CGG 0.577057 7.3:+29906448 MS.gene42205:CDS
GGCTGTTGCAGGCTACCAAA+TGG 0.577386 7.3:+29903595 MS.gene42205:intron
TACCTGTTGGCTTGTAACAT+CGG 0.579742 7.3:-29903490 None:intergenic
TTAGAAGCACCAGTAGTGGA+TGG 0.580206 7.3:-29905667 None:intergenic
GAAGTTCAAAAGGAGAAGGA+AGG 0.583365 7.3:+29904010 MS.gene42205:CDS
GAGATTAGAAGCACCAGTAG+TGG 0.588353 7.3:-29905671 None:intergenic
TCAATTGTATGACTGCAAGT+TGG 0.592735 7.3:+29904959 MS.gene42205:CDS
GGAACTGTAAGCTAAGTGAA+TGG 0.593776 7.3:+29906623 MS.gene42205:CDS
TACCAAATGGAGAGAACAGA+AGG 0.593932 7.3:+29903608 MS.gene42205:CDS
CTGATCTCGCATCAACCGAA+CGG 0.595642 7.3:-29904673 None:intergenic
TTTCAATGCTCAACCACCTG+AGG 0.596049 7.3:+29905716 MS.gene42205:CDS
TACAGTTCCTAAGATAAGGA+TGG 0.597078 7.3:-29906609 None:intergenic
ATTCAAGCTGTCTCAAGACT+GGG 0.597835 7.3:-29905606 None:intergenic
TGTACCAAGAACTGCAAACA+CGG 0.602677 7.3:+29904751 MS.gene42205:CDS
AATTTAGTTTATCAGTAACA+AGG 0.603779 7.3:-29905483 None:intergenic
TGATGACATTGTTGTCCAGA+AGG 0.605837 7.3:+29905789 MS.gene42205:CDS
TTTGACTGGATTATGGAATG+TGG 0.606404 7.3:+29905813 MS.gene42205:CDS
ATTGTGCATACCTCTGGTGT+AGG 0.607000 7.3:-29904821 None:intergenic
TAGAAGCACCAGTAGTGGAT+GGG 0.607302 7.3:-29905666 None:intergenic
ATGCAGCAGGTCTTCCTCAG+TGG 0.620368 7.3:+29904115 MS.gene42205:intron
GCAATTAATAGAGAAAAGGA+TGG 0.621349 7.3:+29904497 MS.gene42205:intron
CTCAACTGTTGTGAATGCAA+AGG 0.621934 7.3:+29905244 MS.gene42205:CDS
AAGCACCAGTAGTGGATGGG+TGG 0.630751 7.3:-29905663 None:intergenic
ATAATGGTAATATGAAGCCA+TGG 0.631825 7.3:+29906530 MS.gene42205:CDS
GTTGGTTATTGGGAAAGTAA+GGG 0.635336 7.3:+29904977 MS.gene42205:CDS
GAGTCAGCGTGCTTTAGGTG+AGG 0.637586 7.3:+29904782 MS.gene42205:CDS
TTGATTTCAGAATGAAGACA+GGG 0.646041 7.3:+29906360 MS.gene42205:intron
AGTGGACTGATAGTCCCGTA+AGG 0.647693 7.3:+29904133 MS.gene42205:CDS
AGGGCATAATGATAAAGACT+GGG 0.655474 7.3:-29905182 None:intergenic
TAGAATGTCATTAGCCCTGG+AGG 0.657306 7.3:-29906406 None:intergenic
AATTAGGGACATTACCTCCA+GGG 0.657912 7.3:+29906392 MS.gene42205:CDS
TAGAGAAAAGGATGGCAAAG+CGG 0.669580 7.3:+29904505 MS.gene42205:CDS
TAGATTGTAGCTTTACCAGG+AGG 0.679016 7.3:-29905538 None:intergenic
TGTCCAGCACGAATGATATG+GGG 0.682822 7.3:+29903776 MS.gene42205:CDS
AACGGTGCAGTTGAAACATG+TGG 0.702671 7.3:+29905853 MS.gene42205:CDS
TTACTGGCATATATCACAGG+TGG 0.707903 7.3:+29906010 MS.gene42205:CDS
GTGGAAGATAGAACCTCAGG+TGG 0.712503 7.3:-29905729 None:intergenic
CTGATGCTGACCTACACCAG+AGG 0.718609 7.3:+29904811 MS.gene42205:CDS
ACGGGACTATCAGTCCACTG+AGG 0.806472 7.3:-29904129 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTTATCAAATAATAGA+TGG - chr7.3:29905384-29905403 None:intergenic 10.0%
!!! ATTAGTTTTAAAATAGAAAT+TGG - chr7.3:29906177-29906196 None:intergenic 10.0%
!! AAATCAAACATGAAAAAAAA+TGG - chr7.3:29906347-29906366 None:intergenic 15.0%
!! TAGCATTCTAATAATATAAT+TGG + chr7.3:29903378-29903397 MS.gene42205:intron 15.0%
!! TTAATGAAAAATTAATGAGA+AGG - chr7.3:29904096-29904115 None:intergenic 15.0%
!! TTCACTAAAGATAATTAATT+AGG - chr7.3:29904892-29904911 None:intergenic 15.0%
!! AAAAGAATCTTATCCAATTT+CGG - chr7.3:29905763-29905782 None:intergenic 20.0%
!! AACATAAGTTAATGAATGAA+GGG - chr7.3:29905421-29905440 None:intergenic 20.0%
!! TACAAACACAATTTAGTTAA+TGG - chr7.3:29904221-29904240 None:intergenic 20.0%
!!! AAAATGTTGATGAATTTAAG+TGG + chr7.3:29905566-29905585 MS.gene42205:CDS 20.0%
!!! AATGAAAGAGTATTATTTCA+AGG + chr7.3:29905636-29905655 MS.gene42205:CDS 20.0%
!!! AATTTAGTTTATCAGTAACA+AGG - chr7.3:29905486-29905505 None:intergenic 20.0%
!!! GTTACTGATAAACTAAATTT+TGG + chr7.3:29905487-29905506 MS.gene42205:CDS 20.0%
! AACAACATAGGGTAAAAAAA+TGG - chr7.3:29903575-29903594 None:intergenic 25.0%
! AAGAAGCAGAAAGATTATTT+CGG - chr7.3:29903822-29903841 None:intergenic 25.0%
! ACATGAAAAAATCAAAGCAA+TGG + chr7.3:29904911-29904930 MS.gene42205:CDS 25.0%
! ACATTAAAATCAGTAGCAAT+AGG - chr7.3:29903947-29903966 None:intergenic 25.0%
! AGGTGAAATAAAATAAAGCA+TGG - chr7.3:29904076-29904095 None:intergenic 25.0%
! AGTTAAGATATTTGTCGAAT+CGG - chr7.3:29905891-29905910 None:intergenic 25.0%
! ATGGTTATACTTGACATATT+TGG - chr7.3:29906593-29906612 None:intergenic 25.0%
! CAACATAAGTTAATGAATGA+AGG - chr7.3:29905422-29905441 None:intergenic 25.0%
! CAATAAAAACCACATATTCA+TGG - chr7.3:29905515-29905534 None:intergenic 25.0%
! CATGAAAAAATCAAAGCAAT+GGG + chr7.3:29904912-29904931 MS.gene42205:CDS 25.0%
! GGTGAAATAAAATAAAGCAT+GGG - chr7.3:29904075-29904094 None:intergenic 25.0%
! GTGAAATAAAATAAAGCATG+GGG - chr7.3:29904074-29904093 None:intergenic 25.0%
! TCTAATCAATACCATATTGT+AGG + chr7.3:29903738-29903757 MS.gene42205:intron 25.0%
!! CAAATCCATCATCTTTAAAA+AGG - chr7.3:29905329-29905348 None:intergenic 25.0%
!! CATGCTATTTGTATATGATA+AGG - chr7.3:29904303-29904322 None:intergenic 25.0%
!! TAAATCTCTTTTTCCAAAAG+AGG + chr7.3:29903644-29903663 MS.gene42205:CDS 25.0%
!! TAATTTTTCATTAATGCAGC+AGG + chr7.3:29904102-29904121 MS.gene42205:intron 25.0%
!! TTACATCATGTTTCTATTCT+CGG + chr7.3:29906068-29906087 MS.gene42205:intron 25.0%
!!! AATGAACATGTTTGATTTGA+AGG + chr7.3:29905969-29905988 MS.gene42205:CDS 25.0%
!!! ACAATATGGTATTGATTAGA+AGG - chr7.3:29903738-29903757 None:intergenic 25.0%
!!! ACATTCCTTTTTAAAGATGA+TGG + chr7.3:29905321-29905340 MS.gene42205:intron 25.0%
!!! ATTTTTTTACCCTATGTTGT+TGG + chr7.3:29903574-29903593 MS.gene42205:intron 25.0%
!!! CTTTTGGAAAAAGAGATTTA+AGG - chr7.3:29903644-29903663 None:intergenic 25.0%
!!! TCAAAGTTTTTTGCAATATG+TGG - chr7.3:29905922-29905941 None:intergenic 25.0%
!!! TTATACATTTTCAGGTTCAT+TGG + chr7.3:29903520-29903539 MS.gene42205:intron 25.0%
AACATCAAGAACCTACAATA+TGG - chr7.3:29903752-29903771 None:intergenic 30.0%
AAGTTAATGAATGAAGGGTT+GGG - chr7.3:29905416-29905435 None:intergenic 30.0%
AATAAATCATGGCATGTACT+CGG + chr7.3:29906448-29906467 MS.gene42205:CDS 30.0%
AATAGGACAATAATGCCTTT+CGG - chr7.3:29903930-29903949 None:intergenic 30.0%
ACATGCCATGATTTATTTAG+CGG - chr7.3:29906445-29906464 None:intergenic 30.0%
AGCCATATTTGTGTTTAAAC+AGG - chr7.3:29903255-29903274 None:intergenic 30.0%
AGTATAACCATCCTTATCTT+AGG + chr7.3:29906602-29906621 MS.gene42205:CDS 30.0%
ATAATGGTAATATGAAGCCA+TGG + chr7.3:29906530-29906549 MS.gene42205:CDS 30.0%
ATCAAGGCTACTATTATTGT+AGG - chr7.3:29904357-29904376 None:intergenic 30.0%
CAAAACATTGTCTGAGAATA+GGG - chr7.3:29905204-29905223 None:intergenic 30.0%
GAAATAATCTTTCTGCTTCT+TGG + chr7.3:29903821-29903840 MS.gene42205:CDS 30.0%
GAGCAAATTGAACATAACAT+CGG + chr7.3:29906044-29906063 MS.gene42205:intron 30.0%
GATCTTCATGGAAAAGTTAA+CGG + chr7.3:29905835-29905854 MS.gene42205:CDS 30.0%
GCAATTAATAGAGAAAAGGA+TGG + chr7.3:29904497-29904516 MS.gene42205:intron 30.0%
GTCCTGTTTAAACACAAATA+TGG + chr7.3:29903250-29903269 MS.gene42205:intron 30.0%
TAACCAAATTCTCAGTCATA+GGG - chr7.3:29905160-29905179 None:intergenic 30.0%
TAAGTTAATGAATGAAGGGT+TGG - chr7.3:29905417-29905436 None:intergenic 30.0%
TCTTAGACAAGAAGTTCAAA+AGG + chr7.3:29904000-29904019 MS.gene42205:CDS 30.0%
TGAAAATATTGTTTGACCTG+TGG + chr7.3:29904395-29904414 MS.gene42205:intron 30.0%
TGCAGCAATTAATAGAGAAA+AGG + chr7.3:29904493-29904512 MS.gene42205:intron 30.0%
TTAACCAAATTCTCAGTCAT+AGG - chr7.3:29905161-29905180 None:intergenic 30.0%
TTCTAGGTAAATACAACCTT+TGG + chr7.3:29904616-29904635 MS.gene42205:CDS 30.0%
TTGATTTCAGAATGAAGACA+GGG + chr7.3:29906360-29906379 MS.gene42205:intron 30.0%
! AGCTCGTTTTATACATTTTC+AGG + chr7.3:29903512-29903531 MS.gene42205:intron 30.0%
! AGTCTTTTATGATACATGTG+CGG + chr7.3:29905279-29905298 MS.gene42205:intron 30.0%
! TTTCATTTTCTTTCCTCCAA+AGG - chr7.3:29904635-29904654 None:intergenic 30.0%
! TTTGATTTCAGAATGAAGAC+AGG + chr7.3:29906359-29906378 MS.gene42205:intron 30.0%
!! AAAGAGTATTATTTCAAGGC+AGG + chr7.3:29905640-29905659 MS.gene42205:CDS 30.0%
!! ATGGTATTGATTAGAAGGTT+AGG - chr7.3:29903733-29903752 None:intergenic 30.0%
!! TTGAGCATTGAAAGATACTT+TGG - chr7.3:29905709-29905728 None:intergenic 30.0%
!!! ATCCTCATCTTTTGTTGTTA+AGG + chr7.3:29903289-29903308 MS.gene42205:intron 30.0%
AAGCACCACATTAAAAGGTA+TGG - chr7.3:29904259-29904278 None:intergenic 35.0%
AATTCCATTTGGTATGGTCT+TGG - chr7.3:29905075-29905094 None:intergenic 35.0%
ACAAGAAGTTCAAAAGGAGA+AGG + chr7.3:29904006-29904025 MS.gene42205:CDS 35.0%
ACATTACTGGCATATATCAC+AGG + chr7.3:29906007-29906026 MS.gene42205:CDS 35.0%
AGAAGGATTTGACTGGATTA+TGG + chr7.3:29905806-29905825 MS.gene42205:CDS 35.0%
AGATCAGATCATTATGGCTA+GGG + chr7.3:29904689-29904708 MS.gene42205:CDS 35.0%
AGCATGATTCCCTACAATTA+GGG - chr7.3:29906276-29906295 None:intergenic 35.0%
AGCTTACAGTTCCTAAGATA+AGG - chr7.3:29906616-29906635 None:intergenic 35.0%
AGGCTACTATTATTGTAGGT+TGG - chr7.3:29904353-29904372 None:intergenic 35.0%
AGGGCATAATGATAAAGACT+GGG - chr7.3:29905185-29905204 None:intergenic 35.0%
AGTTGGTTATTGGGAAAGTA+AGG + chr7.3:29904976-29904995 MS.gene42205:CDS 35.0%
ATAATCCAGTCAAATCCTTC+TGG - chr7.3:29905807-29905826 None:intergenic 35.0%
ATAGGACAATAATGCCTTTC+GGG - chr7.3:29903929-29903948 None:intergenic 35.0%
ATCACAAGCACCACATTAAA+AGG - chr7.3:29904264-29904283 None:intergenic 35.0%
CACATCCGCTAAATAAATCA+TGG + chr7.3:29906437-29906456 MS.gene42205:CDS 35.0%
CAGAACATCATACTTCATCA+AGG - chr7.3:29904373-29904392 None:intergenic 35.0%
CCAAAACATTGTCTGAGAAT+AGG - chr7.3:29905205-29905224 None:intergenic 35.0%
GATAAGCAGTGAATTCCATT+TGG - chr7.3:29905086-29905105 None:intergenic 35.0%
GCTACTATTATTGTAGGTTG+GGG - chr7.3:29904351-29904370 None:intergenic 35.0%
GGCTACTATTATTGTAGGTT+GGG - chr7.3:29904352-29904371 None:intergenic 35.0%
GTCCTTAACAACAAAAGATG+AGG - chr7.3:29903294-29903313 None:intergenic 35.0%
GTTGGTTATTGGGAAAGTAA+GGG + chr7.3:29904977-29904996 MS.gene42205:CDS 35.0%
TACAGTTCCTAAGATAAGGA+TGG - chr7.3:29906612-29906631 None:intergenic 35.0%
TAGGGCATAATGATAAAGAC+TGG - chr7.3:29905186-29905205 None:intergenic 35.0%
TAGGTAAATACAACCTTTGG+AGG + chr7.3:29904619-29904638 MS.gene42205:CDS 35.0%
TCAATTGTATGACTGCAAGT+TGG + chr7.3:29904959-29904978 MS.gene42205:CDS 35.0%
TCCAATTTCGGATAAACTTG+TGG - chr7.3:29905751-29905770 None:intergenic 35.0%
TCCACAAGTTTATCCGAAAT+TGG + chr7.3:29905747-29905766 MS.gene42205:CDS 35.0%
TGGAAAAAGAAGGACATTAC+TGG + chr7.3:29905994-29906013 MS.gene42205:CDS 35.0%
TTATGGAATGTGGATCTTCA+TGG + chr7.3:29905823-29905842 MS.gene42205:CDS 35.0%
TTGACATATTTGGTCCAGTA+AGG - chr7.3:29906583-29906602 None:intergenic 35.0%
TTTGACTGGATTATGGAATG+TGG + chr7.3:29905813-29905832 MS.gene42205:CDS 35.0%
! ACAGGGTACTATGGAAATTA+GGG + chr7.3:29906377-29906396 MS.gene42205:CDS 35.0%
! ACATAGATTGTAGCTTTACC+AGG - chr7.3:29905544-29905563 None:intergenic 35.0%
! AGCACCACATTAAAAGGTAT+GGG - chr7.3:29904258-29904277 None:intergenic 35.0%
! ATAGGGAACTTTCTCTTTTC+AGG - chr7.3:29905143-29905162 None:intergenic 35.0%
! ATCTCCCATACCTTTTAATG+TGG + chr7.3:29904251-29904270 MS.gene42205:intron 35.0%
! CATGTTTCTATTCTCGGAAT+TGG + chr7.3:29906074-29906093 MS.gene42205:intron 35.0%
! CCTATTCTCAGACAATGTTT+TGG + chr7.3:29905202-29905221 MS.gene42205:CDS 35.0%
! CGGAAATTTTCTAGACTCAA+AGG - chr7.3:29903802-29903821 None:intergenic 35.0%
! CTTGTCTAAGATGTGTTTCT+GGG - chr7.3:29903991-29904010 None:intergenic 35.0%
! GTCTTTTATGATACATGTGC+GGG + chr7.3:29905280-29905299 MS.gene42205:intron 35.0%
! TCTTGTCTAAGATGTGTTTC+TGG - chr7.3:29903992-29904011 None:intergenic 35.0%
! TGGTTTTTATTGAATCCTCC+TGG + chr7.3:29905523-29905542 MS.gene42205:CDS 35.0%
! TTTGAAGGTGTGGAAAAAGA+AGG + chr7.3:29905984-29906003 MS.gene42205:CDS 35.0%
!! AAAGATGATGGATTTGAGCT+TGG + chr7.3:29905333-29905352 MS.gene42205:intron 35.0%
!! ACATGTTTGATTTGAAGGTG+TGG + chr7.3:29905974-29905993 MS.gene42205:CDS 35.0%
!! ATGACTGCAAGTTGGTTATT+GGG + chr7.3:29904967-29904986 MS.gene42205:CDS 35.0%
!! GTATTGATTAGAAGGTTAGG+AGG - chr7.3:29903730-29903749 None:intergenic 35.0%
!! TATGACTGCAAGTTGGTTAT+TGG + chr7.3:29904966-29904985 MS.gene42205:CDS 35.0%
!!! ATTTTGGAGCCATGAATATG+TGG + chr7.3:29905503-29905522 MS.gene42205:CDS 35.0%
AAATTAGGGACATTACCTCC+AGG + chr7.3:29906391-29906410 MS.gene42205:CDS 40.0%
AACCAAGGAATCTAGACTGT+TGG - chr7.3:29906236-29906255 None:intergenic 40.0%
AACTTTGATCCCAATGCTTG+TGG + chr7.3:29905934-29905953 MS.gene42205:CDS 40.0%
AAGCACATTCCTTAGTCAGT+TGG + chr7.3:29905046-29905065 MS.gene42205:CDS 40.0%
AATAAAGAAACTCGCTCCAC+AGG - chr7.3:29904414-29904433 None:intergenic 40.0%
AATGGGCCAAGTTCTTTCTA+AGG + chr7.3:29904929-29904948 MS.gene42205:CDS 40.0%
AATTAGGGACATTACCTCCA+GGG + chr7.3:29906392-29906411 MS.gene42205:CDS 40.0%
AGGTGAAACACATGCTTTGA+AGG - chr7.3:29905466-29905485 None:intergenic 40.0%
AGTGTAATGTCCTTGATGTG+AGG + chr7.3:29903340-29903359 MS.gene42205:intron 40.0%
ATATCACAGGTGGCAGAATT+TGG + chr7.3:29906020-29906039 MS.gene42205:CDS 40.0%
ATCTCCGTACGATCTATACT+TGG - chr7.3:29906487-29906506 None:intergenic 40.0%
ATGTCCAGCACGAATGATAT+GGG + chr7.3:29903775-29903794 MS.gene42205:CDS 40.0%
ATTCAAGCTGTCTCAAGACT+GGG - chr7.3:29905609-29905628 None:intergenic 40.0%
ATTTCTTCCTCCTCACATCA+AGG - chr7.3:29903353-29903372 None:intergenic 40.0%
CAAACGCAACAAATCAGGTT+AGG + chr7.3:29903866-29903885 MS.gene42205:intron 40.0%
CAGAAAATTGTGCATACCTC+TGG - chr7.3:29904830-29904849 None:intergenic 40.0%
CAGCATGATTCCCTACAATT+AGG - chr7.3:29906277-29906296 None:intergenic 40.0%
CAGTCCAAGTATAGATCGTA+CGG + chr7.3:29906480-29906499 MS.gene42205:CDS 40.0%
CTCAACTGTTGTGAATGCAA+AGG + chr7.3:29905244-29905263 MS.gene42205:CDS 40.0%
CTTTCGCCTTAGAAAGAACT+TGG - chr7.3:29904938-29904957 None:intergenic 40.0%
GAAGTTCAAAAGGAGAAGGA+AGG + chr7.3:29904010-29904029 MS.gene42205:CDS 40.0%
GACTTCAAACGCAACAAATC+AGG + chr7.3:29903861-29903880 MS.gene42205:CDS 40.0%
GAGATCAGATCATTATGGCT+AGG + chr7.3:29904688-29904707 MS.gene42205:CDS 40.0%
GATGCGAGATCAGATCATTA+TGG + chr7.3:29904683-29904702 MS.gene42205:CDS 40.0%
GCAGCAGTTGTACACTATAA+TGG + chr7.3:29906514-29906533 MS.gene42205:CDS 40.0%
GCAGTGAATTCCATTTGGTA+TGG - chr7.3:29905081-29905100 None:intergenic 40.0%
GGAACTGTAAGCTAAGTGAA+TGG + chr7.3:29906623-29906642 MS.gene42205:CDS 40.0%
GGAGGTAGTAATCTATGGTA+AGG - chr7.3:29905115-29905134 None:intergenic 40.0%
GTATAAAACGAGCTACCTGT+TGG - chr7.3:29903506-29903525 None:intergenic 40.0%
GTCATTGCTATCTCTAACCA+TGG - chr7.3:29906550-29906569 None:intergenic 40.0%
GTTCCCTATGACTGAGAATT+TGG + chr7.3:29905154-29905173 MS.gene42205:CDS 40.0%
GTTGTTGTCTTTGACATTGC+AGG + chr7.3:29905438-29905457 MS.gene42205:intron 40.0%
TACCAAATGGAGAGAACAGA+AGG + chr7.3:29903608-29903627 MS.gene42205:CDS 40.0%
TAGAGAAAAGGATGGCAAAG+CGG + chr7.3:29904505-29904524 MS.gene42205:CDS 40.0%
TAGGACAATAATGCCTTTCG+GGG - chr7.3:29903928-29903947 None:intergenic 40.0%
TATGTCCAGCACGAATGATA+TGG + chr7.3:29903774-29903793 MS.gene42205:CDS 40.0%
TGATGACATTGTTGTCCAGA+AGG + chr7.3:29905789-29905808 MS.gene42205:CDS 40.0%
TGATGTGAGGAGGAAGAAAT+AGG + chr7.3:29903353-29903372 MS.gene42205:intron 40.0%
TGTAAGCTAAGTGAATGGTC+TGG + chr7.3:29906628-29906647 MS.gene42205:CDS 40.0%
TGTACCAAGAACTGCAAACA+CGG + chr7.3:29904751-29904770 MS.gene42205:CDS 40.0%
TTACTGGCATATATCACAGG+TGG + chr7.3:29906010-29906029 MS.gene42205:CDS 40.0%
! AGAATGAAGACAGGGTACTA+TGG + chr7.3:29906368-29906387 MS.gene42205:intron 40.0%
! GACAGGGTACTATGGAAATT+AGG + chr7.3:29906376-29906395 MS.gene42205:CDS 40.0%
! TAGATTGTAGCTTTACCAGG+AGG - chr7.3:29905541-29905560 None:intergenic 40.0%
! TCAGTTGATTCAGCAGTTCT+AGG + chr7.3:29904600-29904619 MS.gene42205:CDS 40.0%
!! AGAATGCTGATTCTACCGTT+CGG + chr7.3:29904658-29904677 MS.gene42205:CDS 40.0%
!! TACCTGTTGGCTTGTAACAT+CGG - chr7.3:29903493-29903512 None:intergenic 40.0%
!! TGACAAAGTATCGTCCTTAC+TGG + chr7.3:29906566-29906585 MS.gene42205:CDS 40.0%
!!! GGAACTTTCTCTTTTCAGGT+GGG - chr7.3:29905139-29905158 None:intergenic 40.0%
AAAGAGAGTCAGCGTGCTTT+AGG + chr7.3:29904777-29904796 MS.gene42205:CDS 45.0%
AACGGTGCAGTTGAAACATG+TGG + chr7.3:29905853-29905872 MS.gene42205:CDS 45.0%
AAGAATGATGCTCACCCTTC+TGG - chr7.3:29904163-29904182 None:intergenic 45.0%
AATGCTTGTGGTTGGGCATA+CGG + chr7.3:29905946-29905965 MS.gene42205:CDS 45.0%
ACTGTTGCAAGCAAAACACG+TGG - chr7.3:29905361-29905380 None:intergenic 45.0%
AGAAGGGTGAGCATCATTCT+TGG + chr7.3:29904162-29904181 MS.gene42205:intron 45.0%
AGAGAAAAGGATGGCAAAGC+GGG + chr7.3:29904506-29904525 MS.gene42205:CDS 45.0%
AGCCAACAGTCTAGATTCCT+TGG + chr7.3:29906231-29906250 MS.gene42205:intron 45.0%
AGGACAATAATGCCTTTCGG+GGG - chr7.3:29903927-29903946 None:intergenic 45.0%
AGTCTAGATTCCTTGGTTGC+AGG + chr7.3:29906238-29906257 MS.gene42205:intron 45.0%
ATCATGGCATGTACTCGGTT+TGG + chr7.3:29906453-29906472 MS.gene42205:CDS 45.0%
ATTGTGCATACCTCTGGTGT+AGG - chr7.3:29904824-29904843 None:intergenic 45.0%
CAACCACGAATCTCGAATCT+TGG + chr7.3:29906125-29906144 MS.gene42205:intron 45.0%
CCAGGGCTAATGACATTCTA+TGG + chr7.3:29906409-29906428 MS.gene42205:CDS 45.0%
CCATAGAATGTCATTAGCCC+TGG - chr7.3:29906412-29906431 None:intergenic 45.0%
CTGCAACAGCCAACAACATA+GGG - chr7.3:29903586-29903605 None:intergenic 45.0%
CTGCTTCTTGGAGAGTTGTT+GGG + chr7.3:29903833-29903852 MS.gene42205:CDS 45.0%
CTTGTGGAAGATAGAACCTC+AGG - chr7.3:29905735-29905754 None:intergenic 45.0%
GAATCTCGAATCTTGGCTGT+TGG + chr7.3:29906132-29906151 MS.gene42205:intron 45.0%
GAGAAGGAAGGAAGATCTTC+AGG + chr7.3:29904022-29904041 MS.gene42205:CDS 45.0%
GATTCAAGCTGTCTCAAGAC+TGG - chr7.3:29905610-29905629 None:intergenic 45.0%
GTAATGTCCTTGATGTGAGG+AGG + chr7.3:29903343-29903362 MS.gene42205:intron 45.0%
GTGTGCTTGCCCTAATTGTA+GGG + chr7.3:29906264-29906283 MS.gene42205:intron 45.0%
GTTGTCCAGAAGGATTTGAC+TGG + chr7.3:29905799-29905818 MS.gene42205:CDS 45.0%
TAAGCCGTGTTTGCAGTTCT+TGG - chr7.3:29904758-29904777 None:intergenic 45.0%
TAGAATGTCATTAGCCCTGG+AGG - chr7.3:29906409-29906428 None:intergenic 45.0%
TATGCCCAACCACAAGCATT+GGG - chr7.3:29905946-29905965 None:intergenic 45.0%
TCATGGCATGTACTCGGTTT+GGG + chr7.3:29906454-29906473 MS.gene42205:CDS 45.0%
TCTGCTTCTTGGAGAGTTGT+TGG + chr7.3:29903832-29903851 MS.gene42205:CDS 45.0%
TGATCCCAATGCTTGTGGTT+GGG + chr7.3:29905939-29905958 MS.gene42205:CDS 45.0%
TGCCTTCTGTTCTCTCCATT+TGG - chr7.3:29903613-29903632 None:intergenic 45.0%
TGGGAGGAGGTAGTAATCTA+TGG - chr7.3:29905120-29905139 None:intergenic 45.0%
TGTCCAGCACGAATGATATG+GGG + chr7.3:29903776-29903795 MS.gene42205:CDS 45.0%
TGTGTGCTTGCCCTAATTGT+AGG + chr7.3:29906263-29906282 MS.gene42205:intron 45.0%
TTGATCCCAATGCTTGTGGT+TGG + chr7.3:29905938-29905957 MS.gene42205:CDS 45.0%
TTTCAATGCTCAACCACCTG+AGG + chr7.3:29905716-29905735 MS.gene42205:CDS 45.0%
! AAGTTTGATTTCCCCCCGAA+AGG + chr7.3:29903912-29903931 MS.gene42205:intron 45.0%
! CAGCTTGTGCTTACCTCTTT+TGG - chr7.3:29903660-29903679 None:intergenic 45.0%
!! GAGATTAGAAGCACCAGTAG+TGG - chr7.3:29905674-29905693 None:intergenic 45.0%
!! GGGAACTTTCTCTTTTCAGG+TGG - chr7.3:29905140-29905159 None:intergenic 45.0%
!! TAGAAGCACCAGTAGTGGAT+GGG - chr7.3:29905669-29905688 None:intergenic 45.0%
!! TTAGAAGCACCAGTAGTGGA+TGG - chr7.3:29905670-29905689 None:intergenic 45.0%
!!! ACTTTCTCTTTTCAGGTGGG+AGG - chr7.3:29905136-29905155 None:intergenic 45.0%
ACTGCTGATGAGCAGGTTAG+AGG + chr7.3:29905011-29905030 MS.gene42205:CDS 50.0%
CAGCCAAGATTCGAGATTCG+TGG - chr7.3:29906131-29906150 None:intergenic 50.0%
CCTGCAACAGCCAACAACAT+AGG - chr7.3:29903587-29903606 None:intergenic 50.0%
CTCCGATGTTACAAGCCAAC+AGG + chr7.3:29903488-29903507 MS.gene42205:CDS 50.0%
CTGATCTCGCATCAACCGAA+CGG - chr7.3:29904676-29904695 None:intergenic 50.0%
GCTACAAACTGCTGATGAGC+AGG + chr7.3:29905004-29905023 MS.gene42205:CDS 50.0%
GCTGCCAAGACCATACCAAA+TGG + chr7.3:29905068-29905087 MS.gene42205:CDS 50.0%
GGACAATAATGCCTTTCGGG+GGG - chr7.3:29903926-29903945 None:intergenic 50.0%
GTATGCCCAACCACAAGCAT+TGG - chr7.3:29905947-29905966 None:intergenic 50.0%
GTGGAAGATAGAACCTCAGG+TGG - chr7.3:29905732-29905751 None:intergenic 50.0%
TCTTGGCAGCCAACTGACTA+AGG - chr7.3:29905058-29905077 None:intergenic 50.0%
TGGTTGCGTGCAGTACTATG+TGG - chr7.3:29906111-29906130 None:intergenic 50.0%
! ACTGTTGGCTGAGGATCAGA+CGG - chr7.3:29906221-29906240 None:intergenic 50.0%
! CCTATGTTGTTGGCTGTTGC+AGG + chr7.3:29903584-29903603 MS.gene42205:intron 50.0%
! GGAATCTAGACTGTTGGCTG+AGG - chr7.3:29906230-29906249 None:intergenic 50.0%
!! AGTGGACTGATAGTCCCGTA+AGG + chr7.3:29904133-29904152 MS.gene42205:CDS 50.0%
!!! TTCTCTTTTCAGGTGGGAGG+AGG - chr7.3:29905133-29905152 None:intergenic 50.0%
ACGGGACTATCAGTCCACTG+AGG - chr7.3:29904132-29904151 None:intergenic 55.0%
AGCACACAGTCCTGCAACCA+AGG - chr7.3:29906251-29906270 None:intergenic 55.0%
AGGCCCCATATCATTCGTGC+TGG - chr7.3:29903782-29903801 None:intergenic 55.0%
ATGCAGCAGGTCTTCCTCAG+TGG + chr7.3:29904115-29904134 MS.gene42205:intron 55.0%
CTGATGCTGACCTACACCAG+AGG + chr7.3:29904811-29904830 MS.gene42205:CDS 55.0%
GGCTGTTGCAGGCTACCAAA+TGG + chr7.3:29903595-29903614 MS.gene42205:intron 55.0%
! GAGTCAGCGTGCTTTAGGTG+AGG + chr7.3:29904782-29904801 MS.gene42205:CDS 55.0%
! TCCCGTAAGGCTAGCCAGAA+GGG + chr7.3:29904146-29904165 MS.gene42205:CDS 55.0%
!! AAGCACCAGTAGTGGATGGG+TGG - chr7.3:29905666-29905685 None:intergenic 55.0%
!! ACCCTTCTGGCTAGCCTTAC+GGG - chr7.3:29904150-29904169 None:intergenic 55.0%
!! CACCCTTCTGGCTAGCCTTA+CGG - chr7.3:29904151-29904170 None:intergenic 55.0%
!! GGCTGCTGAGTTGGTACAAC+AGG + chr7.3:29904527-29904546 MS.gene42205:CDS 55.0%
! GTCCCGTAAGGCTAGCCAGA+AGG + chr7.3:29904145-29904164 MS.gene42205:CDS 60.0%
GCAGGCCACCCATCCACTAC+TGG + chr7.3:29905658-29905677 MS.gene42205:CDS 65.0%
!! GGCAAAGCGGGCTGCTGAGT+TGG + chr7.3:29904518-29904537 MS.gene42205:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 29903223 29906654 29903223 ID=MS.gene42205
chr7.3 mRNA 29903223 29906654 29903223 ID=MS.gene42205.t1;Parent=MS.gene42205
chr7.3 exon 29903223 29903238 29903223 ID=MS.gene42205.t1.exon1;Parent=MS.gene42205.t1
chr7.3 CDS 29903223 29903238 29903223 ID=cds.MS.gene42205.t1;Parent=MS.gene42205.t1
chr7.3 exon 29903475 29903509 29903475 ID=MS.gene42205.t1.exon2;Parent=MS.gene42205.t1
chr7.3 CDS 29903475 29903509 29903475 ID=cds.MS.gene42205.t1;Parent=MS.gene42205.t1
chr7.3 exon 29903606 29903665 29903606 ID=MS.gene42205.t1.exon3;Parent=MS.gene42205.t1
chr7.3 CDS 29903606 29903665 29903606 ID=cds.MS.gene42205.t1;Parent=MS.gene42205.t1
chr7.3 exon 29903760 29903882 29903760 ID=MS.gene42205.t1.exon4;Parent=MS.gene42205.t1
chr7.3 CDS 29903760 29903882 29903760 ID=cds.MS.gene42205.t1;Parent=MS.gene42205.t1
chr7.3 exon 29903980 29904043 29903980 ID=MS.gene42205.t1.exon5;Parent=MS.gene42205.t1
chr7.3 CDS 29903980 29904043 29903980 ID=cds.MS.gene42205.t1;Parent=MS.gene42205.t1
chr7.3 exon 29904124 29904167 29904124 ID=MS.gene42205.t1.exon6;Parent=MS.gene42205.t1
chr7.3 CDS 29904124 29904167 29904124 ID=cds.MS.gene42205.t1;Parent=MS.gene42205.t1
chr7.3 exon 29904498 29904832 29904498 ID=MS.gene42205.t1.exon7;Parent=MS.gene42205.t1
chr7.3 CDS 29904498 29904832 29904498 ID=cds.MS.gene42205.t1;Parent=MS.gene42205.t1
chr7.3 exon 29904908 29905265 29904908 ID=MS.gene42205.t1.exon8;Parent=MS.gene42205.t1
chr7.3 CDS 29904908 29905265 29904908 ID=cds.MS.gene42205.t1;Parent=MS.gene42205.t1
chr7.3 exon 29905460 29906041 29905460 ID=MS.gene42205.t1.exon9;Parent=MS.gene42205.t1
chr7.3 CDS 29905460 29906041 29905460 ID=cds.MS.gene42205.t1;Parent=MS.gene42205.t1
chr7.3 exon 29906370 29906654 29906370 ID=MS.gene42205.t1.exon10;Parent=MS.gene42205.t1
chr7.3 CDS 29906370 29906654 29906370 ID=cds.MS.gene42205.t1;Parent=MS.gene42205.t1
Gene Sequence

>MS.gene42205

ATGGATGCTCTAGAAAGTATTGATCTTGTCCTGTTTAAACACAAATATGGCTCAGTTTGTTTGTGAATCCTCATCTTTTGTTGTTAAGGACTTTTAATTATGAAAATTAAGAGATTTAGTGTAATGTCCTTGATGTGAGGAGGAAGAAATAGGAGTAGCATTCTAATAATATAATTGGCATCGCTATGAATTTCTCTTACGCGCATATACATGAGTTTATGTTATAGTAATTACTTCATTTACATTATGCAGATCACAATGATATCTCCGATGTTACAAGCCAACAGGTAGCTCGTTTTATACATTTTCAGGTTCATTGGTTATACAGATGAATGCATACAATATCTAGCCATTTTTTTACCCTATGTTGTTGGCTGTTGCAGGCTACCAAATGGAGAGAACAGAAGGCACTACACGACCTTAAATCTCTTTTTCCAAAAGAGGTAAGCACAAGCTGACATCACTCTTGTTTTGTCTTTCGTAATATTTTCATGCAAGAGTTATCCTCCTAACCTTCTAATCAATACCATATTGTAGGTTCTTGATGTTATTATGTCCAGCACGAATGATATGGGGCCTTTGAGTCTAGAAAATTTCCGAAATAATCTTTCTGCTTCTTGGAGAGTTGTTGGGTCAAAGACTTCAAACGCAACAAATCAGGTTAGGATTACTGATGTGCTTCTGCTTGAAAGTTTGATTTCCCCCCGAAAGGCATTATTGTCCTATTGCTACTGATTTTAATGTTTTTTAATTAAAGCTAAACAACCCAGAAACACATCTTAGACAAGAAGTTCAAAAGGAGAAGGAAGGAAGATCTTCAGGTTGTATCAGATACTATCAGTTAATATCCCCATGCTTTATTTTATTTCACCTTCTCATTAATTTTTCATTAATGCAGCAGGTCTTCCTCAGTGGACTGATAGTCCCGTAAGGCTAGCCAGAAGGGTGAGCATCATTCTTGGATATTTATCTTTTTTCACTTAGCATTTTAGATACCATTAACTAAATTGTGTTTGTAGTGAAGAGTAATCTCCCATACCTTTTAATGTGGTGCTTGTGATAGTGACAAAAAAAAAGCCTTATCATATACAAATAGCATGATATAATAATATAATTCTTAGCAGACCCCAACCTACAATAATAGTAGCCTTGATGAAGTATGATGTTCTGTTTGAAAATATTGTTTGACCTGTGGAGCGAGTTTCTTTATTTAGAGAACAACAAATATATTCTTAAAGTAAACTTTGTTTTGCTCTTTTTTAATATCTTCTGCAGCAATTAATAGAGAAAAGGATGGCAAAGCGGGCTGCTGAGTTGGTACAACAGGATGATGAAGTTATTGTAAAACTTGAAGATTTAGCTATTGAACGTTCAAAATCAGTTGATTCAGCAGTTCTAGGTAAATACAACCTTTGGAGGAAAGAAAATGAAAATGAGAATGCTGATTCTACCGTTCGGTTGATGCGAGATCAGATCATTATGGCTAGGGTATACTTGAGTATTGCAAAGATGAAGAACAAGCTTGAATTGTACCAAGAACTGCAAACACGGCTTAAAGAGAGTCAGCGTGCTTTAGGTGAGGCAACTTCTGATGCTGACCTACACCAGAGGTATGCACAATTTTCTGAAGTGTATAAATATCTGCATCTGTTTGTATATACACTAACCTAATTAATTATCTTTAGTGAACATGAAAAAATCAAAGCAATGGGCCAAGTTCTTTCTAAGGCGAAAGATCAATTGTATGACTGCAAGTTGGTTATTGGGAAAGTAAGGGCAATGCTACAAACTGCTGATGAGCAGGTTAGAGGCTTGAAGAAACAAAGCACATTCCTTAGTCAGTTGGCTGCCAAGACCATACCAAATGGAATTCACTGCTTATCGATGCGCCTTACCATAGATTACTACCTCCTCCCACCTGAAAAGAGAAAGTTCCCTATGACTGAGAATTTGGTTAATCCCAGTCTTTATCATTATGCCCTATTCTCAGACAATGTTTTGGCTGCATCTGTTGTTGTCAACTCAACTGTTGTGAATGCAAAGGTAAAGAACTAACAGTCTTTTATGATACATGTGCGGGTGTGTATGTTTTTCAAGCACATTCCTTTTTAAAGATGATGGATTTGAGCTTGGATCCACGTGTTTTGCTTGCAACAGTCCATCTATTATTTGATAAATAATATTATTAAACCCAACCCTTCATTCATTAACTTATGTTGTTGTCTTTGACATTGCAGGATCCTTCAAAGCATGTGTTTCACCTTGTTACTGATAAACTAAATTTTGGAGCCATGAATATGTGGTTTTTATTGAATCCTCCTGGTAAAGCTACAATCTATGTTGAAAATGTTGATGAATTTAAGTGGTTGAACTCATCTTACTGCCCAGTCTTGAGACAGCTTGAATCTGCGACAATGAAAGAGTATTATTTCAAGGCAGGCCACCCATCCACTACTGGTGCTTCTAATCTCAAATACAGAAATCCAAAGTATCTTTCAATGCTCAACCACCTGAGGTTCTATCTTCCACAAGTTTATCCGAAATTGGATAAGATTCTTTTTCTTGATGATGACATTGTTGTCCAGAAGGATTTGACTGGATTATGGAATGTGGATCTTCATGGAAAAGTTAACGGTGCAGTTGAAACATGTGGTGAGAGTTTTCACCGATTCGACAAATATCTTAACTTTTCAAATCCACATATTGCAAAAAACTTTGATCCCAATGCTTGTGGTTGGGCATACGGAATGAACATGTTTGATTTGAAGGTGTGGAAAAAGAAGGACATTACTGGCATATATCACAGGTGGCAGAATTTGGTGAGCAAATTGAACATAACATCGGTTTACATCATGTTTCTATTCTCGGAATTGGCTTCTCTGCAACCACATAGTACTGCACGCAACCACGAATCTCGAATCTTGGCTGTTGGATATCAGATGACTCTTATTCCAATTTCTATTTTAAAACTAATTTGAAGAAGTCAGAATGTGAGCCGTCTGATCCTCAGCCAACAGTCTAGATTCCTTGGTTGCAGGACTGTGTGCTTGCCCTAATTGTAGGGAATCATGCTGTGTCTATCTTCACATAAATAGACAAAACAAATGTGATCTTTCACTGACCATTTTTTTTCATGTTTGATTTCAGAATGAAGACAGGGTACTATGGAAATTAGGGACATTACCTCCAGGGCTAATGACATTCTATGGATTAACACATCCGCTAAATAAATCATGGCATGTACTCGGTTTGGGTTACAGTCCAAGTATAGATCGTACGGAGATTGAGAATGCAGCAGTTGTACACTATAATGGTAATATGAAGCCATGGTTAGAGATAGCAATGACAAAGTATCGTCCTTACTGGACCAAATATGTCAAGTATAACCATCCTTATCTTAGGAACTGTAAGCTAAGTGAATGGTCTGGATAA
Protein sequence

>MS.gene42205.t1

MDALENHNDISDVTSQQATKWREQKALHDLKSLFPKEVLDVIMSSTNDMGPLSLENFRNNLSASWRVVGSKTSNATNQLNNPETHLRQEVQKEKEGRSSGLPQWTDSPVRLARRQLIEKRMAKRAAELVQQDDEVIVKLEDLAIERSKSVDSAVLGKYNLWRKENENENADSTVRLMRDQIIMARVYLSIAKMKNKLELYQELQTRLKESQRALGEATSDADLHQSEHEKIKAMGQVLSKAKDQLYDCKLVIGKVRAMLQTADEQVRGLKKQSTFLSQLAAKTIPNGIHCLSMRLTIDYYLLPPEKRKFPMTENLVNPSLYHYALFSDNVLAASVVVNSTVVNAKDPSKHVFHLVTDKLNFGAMNMWFLLNPPGKATIYVENVDEFKWLNSSYCPVLRQLESATMKEYYFKAGHPSTTGASNLKYRNPKYLSMLNHLRFYLPQVYPKLDKILFLDDDIVVQKDLTGLWNVDLHGKVNGAVETCGESFHRFDKYLNFSNPHIAKNFDPNACGWAYGMNMFDLKVWKKKDITGIYHRWQNLNEDRVLWKLGTLPPGLMTFYGLTHPLNKSWHVLGLGYSPSIDRTEIENAAVVHYNGNMKPWLEIAMTKYRPYWTKYVKYNHPYLRNCKLSEWSG