AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene42320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42320.t1 MTR_3g112150 94.386 570 31 1 1 569 1 570 0.0 1037
MS.gene42320.t1 MTR_1g022480 69.966 596 145 5 7 568 18 613 0.0 828
MS.gene42320.t1 MTR_1g022480 69.732 598 145 6 7 568 18 615 0.0 823
MS.gene42320.t1 MTR_1g022480 69.154 603 145 6 7 568 18 620 0.0 820
MS.gene42320.t1 MTR_1g022480 70.635 504 122 4 91 568 26 529 0.0 715
MS.gene42320.t1 MTR_3g117100 60.732 601 196 8 7 568 18 617 0.0 702
MS.gene42320.t1 MTR_4g070810 58.333 600 205 9 7 568 18 610 0.0 667
MS.gene42320.t1 MTR_4g070720 50.524 572 221 14 13 560 21 554 8.93e-172 499
MS.gene42320.t1 MTR_5g021050 47.349 547 201 6 24 568 10 471 1.54e-171 495
MS.gene42320.t1 MTR_5g021050 47.349 547 201 6 24 568 10 471 2.32e-171 494
MS.gene42320.t1 MTR_8g076880 49.135 578 211 13 18 560 13 542 6.92e-171 496
MS.gene42320.t1 MTR_3g117090 49.652 574 225 10 13 560 20 555 6.77e-164 479
MS.gene42320.t1 MTR_3g117090 49.374 559 219 10 13 545 20 540 3.71e-159 466
MS.gene42320.t1 MTR_7g056587 43.002 593 297 11 4 570 6 583 1.76e-150 446
MS.gene42320.t1 MTR_7g056587 43.002 593 297 11 4 570 14 591 2.12e-150 446
MS.gene42320.t1 MTR_7g056587 42.881 590 296 11 4 567 14 588 5.22e-149 442
MS.gene42320.t1 MTR_7g056587 42.881 590 296 11 4 567 28 602 6.15e-149 442
MS.gene42320.t1 MTR_3g010190 52.812 409 182 5 8 407 10 416 1.81e-134 402
MS.gene42320.t1 MTR_8g071000 42.583 573 288 12 30 568 33 598 1.16e-129 392
MS.gene42320.t1 MTR_6g015645 48.018 454 185 9 130 560 9 434 3.73e-127 380
MS.gene42320.t1 MTR_7g056587 43.396 477 236 8 111 567 1 463 1.33e-122 370
MS.gene42320.t1 MTR_4g070790 58.974 273 105 1 64 329 48 320 1.15e-118 357
MS.gene42320.t1 MTR_5g012460 53.763 279 129 0 52 330 74 352 1.25e-109 335
MS.gene42320.t1 MTR_4g070730 49.432 352 129 7 53 398 29 337 1.12e-103 318
MS.gene42320.t1 MTR_4g070780 50.602 332 132 5 46 377 16 315 1.62e-103 318
MS.gene42320.t1 MTR_6g034285 56.190 105 46 0 129 233 195 299 3.64e-33 131
MS.gene42320.t1 MTR_3g098530 31.336 217 130 6 93 308 69 267 2.58e-21 94.4
MS.gene42320.t1 MTR_8g096180 31.696 224 134 7 86 308 42 247 1.50e-18 85.9
MS.gene42320.t1 MTR_3g060670 29.279 222 140 6 86 300 24 235 2.82e-18 87.0
MS.gene42320.t1 MTR_8g096180 31.441 229 138 7 86 308 42 257 4.79e-18 84.7
MS.gene42320.t1 MTR_1g032580 30.275 218 133 8 94 308 32 233 2.74e-16 79.3
MS.gene42320.t1 MTR_2g027140 28.638 213 136 5 94 300 39 241 4.47e-16 80.1
MS.gene42320.t1 MTR_7g070480 27.273 220 136 8 93 303 100 304 4.20e-14 75.1
MS.gene42320.t1 MTR_8g095360 28.507 221 133 8 93 303 181 386 1.87e-12 70.1
MS.gene42320.t1 MTR_4g013300 29.148 223 129 8 93 303 125 330 4.68e-12 68.9
MS.gene42320.t1 MTR_1g032580 29.000 200 120 8 115 308 2 185 8.38e-12 65.1
MS.gene42320.t1 MTR_3g097350 27.155 232 144 8 84 303 238 456 7.05e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42320.t1 AT2G21520 59.344 610 201 8 3 568 18 624 0.0 698
MS.gene42320.t1 AT2G21520 59.344 610 201 8 3 568 18 624 0.0 698
MS.gene42320.t1 AT2G21520 59.344 610 201 8 3 568 14 620 0.0 697
MS.gene42320.t1 AT4G39170 60.500 600 209 7 3 576 14 611 0.0 696
MS.gene42320.t1 AT4G39170 60.333 600 208 8 3 576 14 609 0.0 689
MS.gene42320.t1 AT1G75370 57.191 598 218 10 8 573 19 610 0.0 591
MS.gene42320.t1 AT1G19650 55.556 594 224 10 8 568 16 602 0.0 591
MS.gene42320.t1 AT1G75370 57.262 599 218 10 8 574 19 611 0.0 590
MS.gene42320.t1 AT1G19650 56.917 506 187 7 90 568 29 530 0.0 537
MS.gene42320.t1 AT2G21540 50.817 551 237 7 13 560 18 537 0.0 521
MS.gene42320.t1 AT2G21540 50.817 551 237 7 13 560 18 537 0.0 521
MS.gene42320.t1 AT2G21540 50.817 551 237 7 13 560 18 537 0.0 521
MS.gene42320.t1 AT2G21540 50.817 551 237 7 13 560 18 537 0.0 521
MS.gene42320.t1 AT4G34580 51.332 563 227 12 14 560 11 542 1.13e-180 521
MS.gene42320.t1 AT4G34580 51.332 563 227 12 14 560 11 542 1.13e-180 521
MS.gene42320.t1 AT2G21540 50.455 549 236 8 13 560 18 531 2.32e-180 520
MS.gene42320.t1 AT2G21540 50.455 549 236 8 13 560 18 531 2.32e-180 520
MS.gene42320.t1 AT4G36490 51.268 552 224 11 22 560 12 531 3.43e-180 520
MS.gene42320.t1 AT2G18180 49.735 567 207 12 23 560 17 534 4.40e-178 514
MS.gene42320.t1 AT2G18180 49.735 567 207 12 23 560 17 534 8.18e-178 514
MS.gene42320.t1 AT4G39180 49.474 570 221 13 13 560 18 542 4.28e-174 504
MS.gene42320.t1 AT4G39180 48.611 576 216 13 13 560 18 541 1.21e-173 503
MS.gene42320.t1 AT4G39180 48.611 576 216 13 13 560 18 541 1.21e-173 503
MS.gene42320.t1 AT1G19650 64.141 396 132 4 8 397 16 407 3.71e-169 488
MS.gene42320.t1 AT3G24840 46.372 565 244 9 13 555 23 550 4.68e-160 469
MS.gene42320.t1 AT3G24840 46.372 565 244 9 13 555 23 550 4.68e-160 469
MS.gene42320.t1 AT3G24840 46.372 565 244 9 13 555 23 550 4.68e-160 469
MS.gene42320.t1 AT3G24840 46.643 566 240 10 13 555 23 549 4.68e-160 469
MS.gene42320.t1 AT3G24840 46.643 566 240 10 13 555 23 549 4.68e-160 469
MS.gene42320.t1 AT3G24840 46.643 566 240 10 13 555 23 549 4.68e-160 469
MS.gene42320.t1 AT3G24840 46.643 566 240 10 13 555 23 549 4.68e-160 469
MS.gene42320.t1 AT2G16380 46.564 582 234 13 13 566 9 541 9.29e-160 468
MS.gene42320.t1 AT2G16380 46.564 582 234 13 13 566 9 541 9.29e-160 468
MS.gene42320.t1 AT2G18180 49.595 494 181 10 94 560 11 463 5.01e-157 458
MS.gene42320.t1 AT2G18180 49.595 494 181 10 94 560 11 463 1.15e-156 457
MS.gene42320.t1 AT2G18180 49.057 477 175 10 111 560 1 436 2.08e-148 435
MS.gene42320.t1 AT1G55690 41.815 617 295 10 2 569 18 619 3.70e-137 412
MS.gene42320.t1 AT1G55690 41.546 621 299 10 2 573 18 623 4.17e-137 412
MS.gene42320.t1 AT1G55690 41.546 621 299 10 2 573 18 623 4.17e-137 412
MS.gene42320.t1 AT1G55690 41.546 621 299 10 2 573 18 623 4.17e-137 412
MS.gene42320.t1 AT1G55690 41.546 621 299 10 2 573 18 623 4.17e-137 412
MS.gene42320.t1 AT5G56160 39.483 580 299 8 16 568 19 573 6.55e-130 392
MS.gene42320.t1 AT5G56160 39.483 580 299 8 16 568 19 573 6.55e-130 392
MS.gene42320.t1 AT2G16380 46.025 478 194 10 111 566 1 436 8.04e-129 385
MS.gene42320.t1 AT5G56160 54.518 332 142 3 16 343 19 345 9.17e-126 379
MS.gene42320.t1 AT5G47510 55.469 256 114 0 71 326 29 284 7.09e-107 325
MS.gene42320.t1 AT5G47510 55.469 256 114 0 71 326 28 283 1.14e-106 325
MS.gene42320.t1 AT5G47510 55.469 256 114 0 71 326 29 284 1.17e-106 325
MS.gene42320.t1 AT5G47510 55.752 226 100 0 101 326 2 227 2.69e-96 296
MS.gene42320.t1 AT5G47730 28.333 240 157 5 70 300 8 241 6.07e-19 89.0
MS.gene42320.t1 AT5G47730 28.333 240 157 5 70 300 8 241 6.07e-19 89.0
MS.gene42320.t1 AT1G55840 28.322 286 171 10 57 323 1 271 6.24e-18 85.5
MS.gene42320.t1 AT1G55840 29.365 252 155 8 86 323 2 244 1.31e-17 84.3
MS.gene42320.t1 AT1G01630 29.680 219 131 7 93 308 52 250 2.48e-16 79.7
MS.gene42320.t1 AT1G72160 22.302 417 270 15 1 394 72 457 1.52e-14 76.6
MS.gene42320.t1 AT5G47730 27.604 192 131 3 111 300 1 186 7.87e-14 72.8
MS.gene42320.t1 AT5G47730 27.604 192 131 3 111 300 1 186 7.87e-14 72.8
MS.gene42320.t1 AT4G09160 23.464 358 232 13 33 366 249 588 9.00e-12 68.6
MS.gene42320.t1 AT4G09160 23.464 358 232 13 33 366 249 588 9.49e-12 68.2
MS.gene42320.t1 AT4G09160 23.464 358 232 13 33 366 274 613 1.09e-11 68.2
MS.gene42320.t1 AT4G36640 29.018 224 132 10 94 311 44 246 6.83e-11 63.9
MS.gene42320.t1 AT4G36640 29.018 224 132 10 94 311 44 246 6.83e-11 63.9

Find 120 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTATCACTTGCCTCTTCT+TGG 0.202570 3.2:+89437658 None:intergenic
ATGAATCTTTGAAGTAGTTT+TGG 0.227191 3.2:+89438440 None:intergenic
AGGTTCCAGCACAACAATTT+TGG 0.228844 3.2:-89439155 MS.gene42320:CDS
TGAATGTTCCATTAGGTTCT+TGG 0.246980 3.2:-89438311 MS.gene42320:intron
GGAAAACCTTTAAAATGTTT+TGG 0.274087 3.2:+89438073 None:intergenic
GTCTTGCCATGGCCCTTTAT+CGG 0.290544 3.2:+89438095 None:intergenic
TTGTTCGAACAAAGGCAAAA+AGG 0.292384 3.2:+89437256 None:intergenic
GGGGTTTGGCTTTGTGAATC+TGG 0.297857 3.2:+89437188 None:intergenic
TAAATGCATCATGCAAATTA+AGG 0.298711 3.2:-89440017 MS.gene42320:CDS
AACCATGTGGATAGTACTTC+TGG 0.304122 3.2:+89439356 None:intergenic
CATAGAATTCCCACATGCTT+TGG 0.329438 3.2:+89437701 None:intergenic
AATGAGACAAGAAGAACTTT+TGG 0.329773 3.2:-89436833 MS.gene42320:CDS
GGCTGTATGACATCCGATAA+AGG 0.337655 3.2:-89438108 MS.gene42320:CDS
CAACTACCGCCTAGAAATTC+TGG 0.341995 3.2:+89438150 None:intergenic
CTTGGACATGAGTCAGTATA+GGG 0.349834 3.2:+89437676 None:intergenic
GATGATAAGTGGAAAAGAAT+TGG 0.351511 3.2:-89440060 MS.gene42320:CDS
AGTTACTTGCATAAGCCTAT+TGG 0.352097 3.2:+89439273 None:intergenic
GTGTGACAAAGGGAGTAAAA+AGG 0.353499 3.2:-89437224 MS.gene42320:CDS
GTTACTTGCATAAGCCTATT+GGG 0.369599 3.2:+89439274 None:intergenic
GGATGCAGAAAATCTGCTTT+TGG 0.376361 3.2:-89437313 MS.gene42320:intron
AGTGAGCTACCAGAATTTCT+AGG 0.380292 3.2:-89438159 MS.gene42320:CDS
TACCATAGTCTTTCCTCCAT+TGG 0.380545 3.2:+89439535 None:intergenic
GGTGCTGCTTGCTTCTCCTT+TGG 0.389658 3.2:+89437467 None:intergenic
CCTAGCCTCTCAATATAAAC+AGG 0.390737 3.2:+89439307 None:intergenic
ATAGAATTCCCACATGCTTT+GGG 0.391941 3.2:+89437702 None:intergenic
TCTTGGACATGAGTCAGTAT+AGG 0.395958 3.2:+89437675 None:intergenic
AGCAGCTCCTCTTTCTCACT+TGG 0.399254 3.2:+89437087 None:intergenic
CGAAACTCATTTGGCTCAAA+AGG 0.401215 3.2:-89437443 MS.gene42320:intron
GTAGAAGATGAGGAGGGGTT+TGG 0.414982 3.2:+89437174 None:intergenic
CTAGGCAAGATTTGTTGATA+AGG 0.428115 3.2:-89437561 MS.gene42320:intron
GCAAGATTTGTTGATAAGGT+TGG 0.435405 3.2:-89437557 MS.gene42320:CDS
TCAAGGTAAGTCAAAAGTTA+AGG 0.439797 3.2:-89436780 MS.gene42320:CDS
CTCCTCTTTCTCACTTGGCA+TGG 0.452012 3.2:+89437092 None:intergenic
AAGCTCACTGAGGCGTTTCA+AGG 0.453754 3.2:+89437152 None:intergenic
AAAAGTGGCTATACATCTAC+TGG 0.454005 3.2:-89437759 MS.gene42320:CDS
TACTATCCACATGGTTATCA+TGG 0.455469 3.2:-89439349 MS.gene42320:CDS
AACATCCAAAATTGTTGTGC+TGG 0.460482 3.2:+89439150 None:intergenic
GCAGCACCACGAAACTCATT+TGG 0.462925 3.2:-89437452 MS.gene42320:CDS
TTTATCATCAATGCTGGTCC+TGG 0.464243 3.2:-89438504 MS.gene42320:CDS
ATCCAATGGAGGAAAGACTA+TGG 0.472951 3.2:-89439537 MS.gene42320:CDS
TTTGAGCCAAATGAGTTTCG+TGG 0.473382 3.2:+89437446 None:intergenic
GTTGATAAGGTTGGTCATAC+CGG 0.475173 3.2:-89437548 MS.gene42320:CDS
GGTAACCAGGACTGTTACAG+TGG 0.476374 3.2:-89437292 MS.gene42320:CDS
GTCGAACATCCTCAATGGAC+AGG 0.479812 3.2:+89439941 None:intergenic
ATGACTATCATATGTTATTG+AGG 0.481600 3.2:-89439843 MS.gene42320:intron
TTGAGAAAGCAAAGCTTATG+TGG 0.482104 3.2:-89439569 MS.gene42320:CDS
GCTGTATGACATCCGATAAA+GGG 0.483951 3.2:-89438107 MS.gene42320:CDS
GATGAGTTCTCGAGCAGACT+TGG 0.484272 3.2:+89438865 None:intergenic
TCGTAACAATTTCCAACGAC+GGG 0.488552 3.2:-89437914 MS.gene42320:CDS
AGAGTTCAGAGGATGATAAG+TGG 0.489773 3.2:-89440071 MS.gene42320:CDS
ATCAATAATCTTGTCAACCA+TGG 0.500918 3.2:+89437496 None:intergenic
TAGGAAAAGTTGATCCCAAT+AGG 0.504043 3.2:-89439288 MS.gene42320:CDS
TGCCATGCCAAGTGAGAAAG+AGG 0.504746 3.2:-89437094 MS.gene42320:CDS
GTTGACAAGATTATTGATGT+TGG 0.506685 3.2:-89437491 MS.gene42320:CDS
TTTCCTCCATTGGATCATGT+TGG 0.513399 3.2:+89439545 None:intergenic
TGATAGTCATCATGTATTGA+AGG 0.523730 3.2:+89439856 None:intergenic
AACTTGTCGAACATCCTCAA+TGG 0.528444 3.2:+89439936 None:intergenic
CCTGTTTATATTGAGAGGCT+AGG 0.536718 3.2:-89439307 MS.gene42320:CDS
GTTGTAGATTCTTGAAAGCA+AGG 0.537683 3.2:-89439602 MS.gene42320:intron
CAAATGTTTATCATCAATGC+TGG 0.541743 3.2:-89438510 MS.gene42320:CDS
ATATTTGAGATACCACGTGC+AGG 0.550213 3.2:-89439239 MS.gene42320:CDS
TGGTACAGATACAATTATAG+AGG 0.554834 3.2:-89439517 MS.gene42320:intron
TGAGGATGTTCGACAAGTTG+AGG 0.556408 3.2:-89439932 MS.gene42320:CDS
TGGTTATCATGGTGTGGACA+AGG 0.560676 3.2:-89439338 MS.gene42320:CDS
TAACAATTTCCAACGACGGG+GGG 0.562654 3.2:-89437911 MS.gene42320:CDS
TATTTGAGATACCACGTGCA+GGG 0.563935 3.2:-89439238 MS.gene42320:CDS
ATAGCATTTCGTGTGACAAA+GGG 0.564103 3.2:-89437234 MS.gene42320:CDS
AATAGCATTTCGTGTGACAA+AGG 0.565114 3.2:-89437235 MS.gene42320:CDS
TCAATAATCTTGTCAACCAT+GGG 0.565693 3.2:+89437497 None:intergenic
GATTATTGATGTTGGACCAA+AGG 0.573610 3.2:-89437483 MS.gene42320:CDS
ATTCCCACATGCTTTGGGAG+AGG 0.576118 3.2:+89437707 None:intergenic
TTTGGCATACATAGACAGTC+GGG 0.579008 3.2:-89436815 MS.gene42320:CDS
AGAGCTCATTGCTACAAAGA+AGG 0.579053 3.2:-89437028 MS.gene42320:intron
GCAGCAAAAGTAGTGGCAGT+AGG 0.581849 3.2:-89439972 MS.gene42320:CDS
GGAACATATTCATCATACTC+AGG 0.584478 3.2:+89437518 None:intergenic
GAAGACCTGTTTATATTGAG+AGG 0.585453 3.2:-89439312 MS.gene42320:CDS
GCGTTTCAAGGTAGAAGATG+AGG 0.585982 3.2:+89437164 None:intergenic
GTATCTCAAATATCTTTCCA+TGG 0.587541 3.2:+89439249 None:intergenic
ATCACCTCTCCCAAAGCATG+TGG 0.587564 3.2:-89437711 MS.gene42320:CDS
AACAATTTCCAACGACGGGG+GGG 0.590029 3.2:-89437910 MS.gene42320:CDS
GATGCCCACTGTAACAGTCC+TGG 0.590148 3.2:+89437287 None:intergenic
AAATGCTATTGTTCGAACAA+AGG 0.593799 3.2:+89437248 None:intergenic
TGCATGCAGATGGTTCTTAG+TGG 0.596223 3.2:-89437960 MS.gene42320:intron
TGTGGGCCAACATGATCCAA+TGG 0.599513 3.2:-89439551 MS.gene42320:CDS
GAGCAATTCCCTGTCCATTG+AGG 0.600815 3.2:-89439950 MS.gene42320:CDS
TACTTGAGATTATCGATGCG+AGG 0.602427 3.2:-89438268 MS.gene42320:intron
ACTGACTCATGTCCAAGAAG+AGG 0.602573 3.2:-89437670 MS.gene42320:intron
AGTTTATCGTGTGGATGCAT+TGG 0.603746 3.2:-89437055 MS.gene42320:CDS
ATCGTAACAATTTCCAACGA+CGG 0.608081 3.2:-89437915 MS.gene42320:CDS
TCCTAAACAGGCTTTGTACG+AGG 0.609326 3.2:-89436860 MS.gene42320:intron
GATAAGGTTGGTCATACCGG+TGG 0.614668 3.2:-89437545 MS.gene42320:CDS
TGACATCCGATAAAGGGCCA+TGG 0.616150 3.2:-89438101 MS.gene42320:CDS
TTCAAGGTAGAAGATGAGGA+GGG 0.616304 3.2:+89437168 None:intergenic
TCAAGGTAGAAGATGAGGAG+GGG 0.617122 3.2:+89437169 None:intergenic
AAAAGAAGCAGCAAAAGTAG+TGG 0.618855 3.2:-89439979 MS.gene42320:CDS
TCCACATGGTTATCATGGTG+TGG 0.619712 3.2:-89439344 MS.gene42320:CDS
TCGAACATCCTCAATGGACA+GGG 0.623693 3.2:+89439942 None:intergenic
TTAGCAGCTATAGAGCAAGC+TGG 0.628886 3.2:+89439187 None:intergenic
ATCATACTCAGGAAAACCAC+CGG 0.629075 3.2:+89437529 None:intergenic
TGAAAGAAGAGAGAGTTCAG+AGG 0.630165 3.2:-89440082 MS.gene42320:CDS
TTTCAAGGTAGAAGATGAGG+AGG 0.637871 3.2:+89437167 None:intergenic
TGAGAAAGCAAAGCTTATGT+GGG 0.641603 3.2:-89439568 MS.gene42320:CDS
GTAACAATTTCCAACGACGG+GGG 0.643422 3.2:-89437912 MS.gene42320:CDS
ATAGCTGCTAAGAGACACAT+AGG 0.643444 3.2:-89439175 MS.gene42320:CDS
TTCCATAGAAGCTTAAAACC+AGG 0.645111 3.2:+89438486 None:intergenic
GCTTATGCAAGTAACTACCA+TGG 0.650661 3.2:-89439266 MS.gene42320:CDS
TATCATGGTGTGGACAAGGA+GGG 0.652614 3.2:-89439334 MS.gene42320:CDS
TAATCTCAAGTAATTTACTG+TGG 0.654334 3.2:+89438279 None:intergenic
GTATGATGAATATGTTCCCA+TGG 0.657630 3.2:-89437513 MS.gene42320:CDS
CGTAACAATTTCCAACGACG+GGG 0.667892 3.2:-89437913 MS.gene42320:CDS
GTAACCAGGACTGTTACAGT+GGG 0.670798 3.2:-89437291 MS.gene42320:CDS
TGCACCTGTGTAGATCATGA+TGG 0.672539 3.2:-89438129 MS.gene42320:CDS
GTCCAGAAGTACTATCCACA+TGG 0.674124 3.2:-89439358 MS.gene42320:CDS
TCACCTCTCCCAAAGCATGT+GGG 0.674728 3.2:-89437710 MS.gene42320:CDS
TTATCATGGTGTGGACAAGG+AGG 0.685438 3.2:-89439335 MS.gene42320:CDS
GAATGCTGCAGTTTATCGTG+TGG 0.686694 3.2:-89437064 MS.gene42320:CDS
GGGCCAACATGATCCAATGG+AGG 0.693515 3.2:-89439548 MS.gene42320:CDS
ACAGCCATCATGATCTACAC+AGG 0.695056 3.2:+89438125 None:intergenic
TCCACACCATGATAACCATG+TGG 0.713264 3.2:+89439343 None:intergenic
GAGCTACCAGAATTTCTAGG+CGG 0.787653 3.2:-89438156 MS.gene42320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTAATTTTAAATTAATT+AGG - chr3.2:89438076-89438095 MS.gene42320:intron 0.0%
!!! TAATTAATTTAAAATTAATA+TGG + chr3.2:89438077-89438096 None:intergenic 0.0%
!!! AATTAATTGAAAAATTGTTT+TGG - chr3.2:89437254-89437273 MS.gene42320:CDS 10.0%
!!! AATTTTTCAATTAATTTTCA+TGG + chr3.2:89437250-89437269 None:intergenic 10.0%
!! AAAAGAATAAAAAGTAACAA+AGG + chr3.2:89436803-89436822 None:intergenic 15.0%
!!! TTATTCTTTTTCATGAATTT+AGG - chr3.2:89436813-89436832 MS.gene42320:CDS 15.0%
!! ATCCTATGATTAATAATAAG+TGG + chr3.2:89438974-89438993 None:intergenic 20.0%
!! TATTTCAGGAAAATACATAA+GGG + chr3.2:89438677-89438696 None:intergenic 20.0%
!! TTATTTCAGGAAAATACATA+AGG + chr3.2:89438678-89438697 None:intergenic 20.0%
!! TTCCACTTATTATTAATCAT+AGG - chr3.2:89438969-89438988 MS.gene42320:intron 20.0%
!! TTTCAATTCATCATTATTTC+AGG + chr3.2:89438691-89438710 None:intergenic 20.0%
!!! ACTCTCTTTTTTTTCATATT+TGG - chr3.2:89437582-89437601 MS.gene42320:intron 20.0%
!!! ATTTTTATAAGATTCCATTG+AGG - chr3.2:89438645-89438664 MS.gene42320:intron 20.0%
!!! TATTTAGGTTCCATTTATAT+TGG - chr3.2:89439632-89439651 MS.gene42320:intron 20.0%
!!! TTAAGAACTTCTTTAACTTT+AGG - chr3.2:89440078-89440097 MS.gene42320:CDS 20.0%
! AGAATAAAAAGTAACAAAGG+AGG + chr3.2:89436800-89436819 None:intergenic 25.0%
! ATAGGTTTATACTACAGATT+AGG - chr3.2:89439608-89439627 MS.gene42320:intron 25.0%
! ATGACTATCATATGTTATTG+AGG - chr3.2:89437180-89437199 MS.gene42320:CDS 25.0%
! ATTAAAGAATCTTTATGGCA+TGG - chr3.2:89439689-89439708 MS.gene42320:intron 25.0%
! CAGTCATTAAAGAATCTTTA+TGG - chr3.2:89439684-89439703 MS.gene42320:intron 25.0%
! GTGATAGTACATTAATTACA+AGG - chr3.2:89439379-89439398 MS.gene42320:CDS 25.0%
! TAAATGCATCATGCAAATTA+AGG - chr3.2:89437006-89437025 MS.gene42320:intron 25.0%
! TAATCTCAAGTAATTTACTG+TGG + chr3.2:89438747-89438766 None:intergenic 25.0%
! TACTACAGATTAGGATATTT+AGG - chr3.2:89439617-89439636 MS.gene42320:intron 25.0%
! TATCTTATTCTACATACTTC+AGG + chr3.2:89438217-89438236 None:intergenic 25.0%
! TCAGTTACATATCTTAAATG+AGG + chr3.2:89438474-89438493 None:intergenic 25.0%
! TGTTTGACATCCAATATAAA+TGG + chr3.2:89439645-89439664 None:intergenic 25.0%
! TTAGAGCTTCAATTAAATCA+TGG + chr3.2:89437970-89437989 None:intergenic 25.0%
! TTGAAATTGAATGTTCCATT+AGG - chr3.2:89438705-89438724 MS.gene42320:intron 25.0%
!! TGATAAAACATCTTTTCCAA+AGG - chr3.2:89439146-89439165 MS.gene42320:CDS 25.0%
!! TGCTATAATCCTTTGAATTT+TGG - chr3.2:89439225-89439244 MS.gene42320:CDS 25.0%
!!! ATGAATCTTTGAAGTAGTTT+TGG + chr3.2:89438586-89438605 None:intergenic 25.0%
!!! GGAAAACCTTTAAAATGTTT+TGG + chr3.2:89438953-89438972 None:intergenic 25.0%
!!! TACTATGGTTTTTTCTCTAT+AGG - chr3.2:89437616-89437635 MS.gene42320:intron 25.0%
!!! TCTATAGGATTTTGATTTCA+AGG - chr3.2:89437631-89437650 MS.gene42320:intron 25.0%
!!! TGAATCTTTGAAGTAGTTTT+GGG + chr3.2:89438585-89438604 None:intergenic 25.0%
AAATGCTATTGTTCGAACAA+AGG + chr3.2:89439778-89439797 None:intergenic 30.0%
ACATAGCAAGTAAAGCATAA+TGG + chr3.2:89437213-89437232 None:intergenic 30.0%
ACTCAGTAACCAAAATTCAA+AGG + chr3.2:89439237-89439256 None:intergenic 30.0%
ATCAATAATCTTGTCAACCA+TGG + chr3.2:89439530-89439549 None:intergenic 30.0%
ATGAATATGCAAAGAGATCT+AGG + chr3.2:89437350-89437369 None:intergenic 30.0%
ATTCATACTACATCTTAACC+TGG - chr3.2:89438992-89439011 MS.gene42320:intron 30.0%
CAAATGTTTATCATCAATGC+TGG - chr3.2:89438513-89438532 MS.gene42320:CDS 30.0%
GAAATGAAAAACTGTACCTT+TGG + chr3.2:89439165-89439184 None:intergenic 30.0%
GATGATAAGTGGAAAAGAAT+TGG - chr3.2:89436963-89436982 MS.gene42320:intron 30.0%
GTATCTCAAATATCTTTCCA+TGG + chr3.2:89437777-89437796 None:intergenic 30.0%
GTATGATATTGCATATTGAC+TGG - chr3.2:89437371-89437390 MS.gene42320:intron 30.0%
GTTGACAAGATTATTGATGT+TGG - chr3.2:89439532-89439551 MS.gene42320:CDS 30.0%
TCAAGGTAAGTCAAAAGTTA+AGG - chr3.2:89440243-89440262 MS.gene42320:intron 30.0%
TCAATAATCTTGTCAACCAT+GGG + chr3.2:89439529-89439548 None:intergenic 30.0%
TGATAGTCATCATGTATTGA+AGG + chr3.2:89437170-89437189 None:intergenic 30.0%
TGGTACAGATACAATTATAG+AGG - chr3.2:89437506-89437525 MS.gene42320:CDS 30.0%
TTGAAACCCTATAAAGCAAA+GGG + chr3.2:89438130-89438149 None:intergenic 30.0%
! AATGAGACAAGAAGAACTTT+TGG - chr3.2:89440190-89440209 MS.gene42320:intron 30.0%
! ACAACAATTTTGGATGTTCA+AGG - chr3.2:89437878-89437897 MS.gene42320:CDS 30.0%
! GAAACACTACTGATTATAGT+AGG - chr3.2:89436912-89436931 MS.gene42320:intron 30.0%
! GCAAGACCAAAACATTTTAA+AGG - chr3.2:89438944-89438963 MS.gene42320:intron 30.0%
! TTAGACATAGTTCCTTGTTT+AGG + chr3.2:89438405-89438424 None:intergenic 30.0%
! TTGGTGTTCATACTATACTA+TGG - chr3.2:89437601-89437620 MS.gene42320:intron 30.0%
! TTTGAAACCCTATAAAGCAA+AGG + chr3.2:89438131-89438150 None:intergenic 30.0%
!! TCAACATTTGGTTCTGTTAT+TGG - chr3.2:89438782-89438801 MS.gene42320:intron 30.0%
!!! AACTGTTTTTATACTCGTCT+AGG - chr3.2:89439444-89439463 MS.gene42320:intron 30.0%
AAAAGAAGCAGCAAAAGTAG+TGG - chr3.2:89437044-89437063 MS.gene42320:CDS 35.0%
AAAAGTGGCTATACATCTAC+TGG - chr3.2:89439264-89439283 MS.gene42320:CDS 35.0%
AACATCCAAAATTGTTGTGC+TGG + chr3.2:89437876-89437895 None:intergenic 35.0%
AATAGCATTTCGTGTGACAA+AGG - chr3.2:89439788-89439807 MS.gene42320:intron 35.0%
ACTTGTTTCCAAGAACCTAA+TGG + chr3.2:89438723-89438742 None:intergenic 35.0%
AGAAGTTCTTAACAATGACG+TGG + chr3.2:89440070-89440089 None:intergenic 35.0%
AGTTACTTGCATAAGCCTAT+TGG + chr3.2:89437753-89437772 None:intergenic 35.0%
ATAGAATTCCCACATGCTTT+GGG + chr3.2:89439324-89439343 None:intergenic 35.0%
ATAGCATTTCGTGTGACAAA+GGG - chr3.2:89439789-89439808 MS.gene42320:intron 35.0%
ATCGTAACAATTTCCAACGA+CGG - chr3.2:89439108-89439127 MS.gene42320:intron 35.0%
CTTCTTCCCTTTGCTTTATA+GGG - chr3.2:89438121-89438140 MS.gene42320:CDS 35.0%
GAAGACCTGTTTATATTGAG+AGG - chr3.2:89437711-89437730 MS.gene42320:CDS 35.0%
GATTATTGATGTTGGACCAA+AGG - chr3.2:89439540-89439559 MS.gene42320:CDS 35.0%
GCATGTTCAATTTCCTAAAC+AGG - chr3.2:89440151-89440170 MS.gene42320:intron 35.0%
GCTTATGAGAACTTATCTAC+TGG + chr3.2:89437314-89437333 None:intergenic 35.0%
GGAACATATTCATCATACTC+AGG + chr3.2:89439508-89439527 None:intergenic 35.0%
GTATGATGAATATGTTCCCA+TGG - chr3.2:89439510-89439529 MS.gene42320:intron 35.0%
GTTACTTGCATAAGCCTATT+GGG + chr3.2:89437752-89437771 None:intergenic 35.0%
GTTGTAGATTCTTGAAAGCA+AGG - chr3.2:89437421-89437440 MS.gene42320:intron 35.0%
GTTTAGATTGACAGTGAGTA+TGG - chr3.2:89437928-89437947 MS.gene42320:CDS 35.0%
TACTATCCACATGGTTATCA+TGG - chr3.2:89437674-89437693 MS.gene42320:CDS 35.0%
TCGGGAAAAAAGCAAATTCA+AGG - chr3.2:89440226-89440245 MS.gene42320:intron 35.0%
TCTTCTTCCCTTTGCTTTAT+AGG - chr3.2:89438120-89438139 MS.gene42320:CDS 35.0%
TGAATGTTCCATTAGGTTCT+TGG - chr3.2:89438712-89438731 MS.gene42320:intron 35.0%
TGAGAAAGCAAAGCTTATGT+GGG - chr3.2:89437455-89437474 MS.gene42320:CDS 35.0%
TGGACTAATGGTGAATTTAG+CGG + chr3.2:89438010-89438029 None:intergenic 35.0%
TGTGACAAAGGGAGTAAAAA+GGG - chr3.2:89439800-89439819 MS.gene42320:intron 35.0%
TGTTCGAACAAAGGCAAAAA+GGG + chr3.2:89439769-89439788 None:intergenic 35.0%
TTCCATAGAAGCTTAAAACC+AGG + chr3.2:89438540-89438559 None:intergenic 35.0%
TTGAGAAAGCAAAGCTTATG+TGG - chr3.2:89437454-89437473 MS.gene42320:CDS 35.0%
TTGTTCGAACAAAGGCAAAA+AGG + chr3.2:89439770-89439789 None:intergenic 35.0%
! TAGGAAAAGTTGATCCCAAT+AGG - chr3.2:89437735-89437754 MS.gene42320:CDS 35.0%
! TGATATTGCATATTGACTGG+TGG - chr3.2:89437374-89437393 MS.gene42320:intron 35.0%
! TTTTGGCATACATAGACAGT+CGG - chr3.2:89440207-89440226 MS.gene42320:intron 35.0%
!! AAAATCTGCTTTTGGTAACC+AGG - chr3.2:89439718-89439737 MS.gene42320:intron 35.0%
!! CTACATCTTAACCTGGTTTT+TGG - chr3.2:89438999-89439018 MS.gene42320:intron 35.0%
!! CTAGGCAAGATTTGTTGATA+AGG - chr3.2:89439462-89439481 MS.gene42320:intron 35.0%
!! GCAAGATTTGTTGATAAGGT+TGG - chr3.2:89439466-89439485 MS.gene42320:intron 35.0%
!!! AAAATGTTTTGGTCTTGCCA+TGG + chr3.2:89438942-89438961 None:intergenic 35.0%
!!! CATTTTTTTCAAGCTCACTG+AGG + chr3.2:89439884-89439903 None:intergenic 35.0%
!!! GAATTTTGGTTACTGAGTAC+AGG - chr3.2:89439239-89439258 MS.gene42320:CDS 35.0%
AACCATGTGGATAGTACTTC+TGG + chr3.2:89437670-89437689 None:intergenic 40.0%
AACTTGTCGAACATCCTCAA+TGG + chr3.2:89437090-89437109 None:intergenic 40.0%
AATAGTTGTCTGCATGCAGA+TGG - chr3.2:89439053-89439072 MS.gene42320:intron 40.0%
AGAGCTCATTGCTACAAAGA+AGG - chr3.2:89439995-89440014 MS.gene42320:CDS 40.0%
AGAGTTCAGAGGATGATAAG+TGG - chr3.2:89436952-89436971 MS.gene42320:intron 40.0%
AGCCATTTAGTGCATGACTT+TGG + chr3.2:89438030-89438049 None:intergenic 40.0%
AGTGAGCTACCAGAATTTCT+AGG - chr3.2:89438864-89438883 MS.gene42320:CDS 40.0%
AGTGCATGACTTTGGACTAA+TGG + chr3.2:89438022-89438041 None:intergenic 40.0%
AGTTTATCGTGTGGATGCAT+TGG - chr3.2:89439968-89439987 MS.gene42320:CDS 40.0%
ATAGCTGCTAAGAGACACAT+AGG - chr3.2:89437848-89437867 MS.gene42320:intron 40.0%
ATCATACTCAGGAAAACCAC+CGG + chr3.2:89439497-89439516 None:intergenic 40.0%
ATCCAATGGAGGAAAGACTA+TGG - chr3.2:89437486-89437505 MS.gene42320:CDS 40.0%
ATGCGAGGTAACTCAACATT+TGG - chr3.2:89438770-89438789 MS.gene42320:intron 40.0%
CAGTGAGTATGGCTTAATCA+TGG - chr3.2:89437939-89437958 MS.gene42320:CDS 40.0%
CATAAGGGTTCTTACCTCAA+TGG + chr3.2:89438662-89438681 None:intergenic 40.0%
CATAGAATTCCCACATGCTT+TGG + chr3.2:89439325-89439344 None:intergenic 40.0%
CCTAGCCTCTCAATATAAAC+AGG + chr3.2:89437719-89437738 None:intergenic 40.0%
CCTGTTTATATTGAGAGGCT+AGG - chr3.2:89437716-89437735 MS.gene42320:CDS 40.0%
CTTGGACATGAGTCAGTATA+GGG + chr3.2:89439350-89439369 None:intergenic 40.0%
GCAAAGTAGAACCAAAAACC+AGG + chr3.2:89439013-89439032 None:intergenic 40.0%
GCTGTATGACATCCGATAAA+GGG - chr3.2:89438916-89438935 MS.gene42320:intron 40.0%
GCTTATGCAAGTAACTACCA+TGG - chr3.2:89437757-89437776 MS.gene42320:CDS 40.0%
GTCCAAAGTCATGCACTAAA+TGG - chr3.2:89438025-89438044 MS.gene42320:intron 40.0%
GTGTGACAAAGGGAGTAAAA+AGG - chr3.2:89439799-89439818 MS.gene42320:intron 40.0%
TACCATAGTCTTTCCTCCAT+TGG + chr3.2:89437491-89437510 None:intergenic 40.0%
TACTATCACTTGCCTCTTCT+TGG + chr3.2:89439368-89439387 None:intergenic 40.0%
TACTGAGTACAGGCAAAAAG+TGG - chr3.2:89439249-89439268 MS.gene42320:CDS 40.0%
TACTTGAGATTATCGATGCG+AGG - chr3.2:89438755-89438774 MS.gene42320:intron 40.0%
TCGTAACAATTTCCAACGAC+GGG - chr3.2:89439109-89439128 MS.gene42320:intron 40.0%
TCTTGGACATGAGTCAGTAT+AGG + chr3.2:89439351-89439370 None:intergenic 40.0%
TGAAAGAAGAGAGAGTTCAG+AGG - chr3.2:89436941-89436960 MS.gene42320:intron 40.0%
TGAGTATGGCTTAATCATGG+CGG - chr3.2:89437942-89437961 MS.gene42320:CDS 40.0%
TTCAAGGTAGAAGATGAGGA+GGG + chr3.2:89439858-89439877 None:intergenic 40.0%
TTGAGAAGCTCACCTAAACA+AGG - chr3.2:89438390-89438409 MS.gene42320:intron 40.0%
TTGGCTCAAAAGGTGAGAAT+AGG - chr3.2:89439590-89439609 MS.gene42320:CDS 40.0%
TTTATCATCAATGCTGGTCC+TGG - chr3.2:89438519-89438538 MS.gene42320:CDS 40.0%
TTTCAAGGTAGAAGATGAGG+AGG + chr3.2:89439859-89439878 None:intergenic 40.0%
TTTCCTCCATTGGATCATGT+TGG + chr3.2:89437481-89437500 None:intergenic 40.0%
TTTGAGCCAAATGAGTTTCG+TGG + chr3.2:89439580-89439599 None:intergenic 40.0%
TTTGGCATACATAGACAGTC+GGG - chr3.2:89440208-89440227 MS.gene42320:intron 40.0%
! AATTTTGGATGTTCAAGGCG+TGG - chr3.2:89437883-89437902 MS.gene42320:CDS 40.0%
! AGGTTCCAGCACAACAATTT+TGG - chr3.2:89437868-89437887 MS.gene42320:intron 40.0%
! ATATTTGAGATACCACGTGC+AGG - chr3.2:89437784-89437803 MS.gene42320:intron 40.0%
! CGAAACTCATTTGGCTCAAA+AGG - chr3.2:89439580-89439599 MS.gene42320:CDS 40.0%
! GGATGCAGAAAATCTGCTTT+TGG - chr3.2:89439710-89439729 MS.gene42320:intron 40.0%
! GTTGATAAGGTTGGTCATAC+CGG - chr3.2:89439475-89439494 MS.gene42320:intron 40.0%
! TATTTGAGATACCACGTGCA+GGG - chr3.2:89437785-89437804 MS.gene42320:intron 40.0%
!!! GTCCTGGTTTTAAGCTTCTA+TGG - chr3.2:89438535-89438554 MS.gene42320:intron 40.0%
ACAGCCATCATGATCTACAC+AGG + chr3.2:89438901-89438920 None:intergenic 45.0%
CAACTACCGCCTAGAAATTC+TGG + chr3.2:89438876-89438895 None:intergenic 45.0%
CGTAACAATTTCCAACGACG+GGG - chr3.2:89439110-89439129 MS.gene42320:intron 45.0%
GAATGCTGCAGTTTATCGTG+TGG - chr3.2:89439959-89439978 MS.gene42320:CDS 45.0%
GACAAAGGGAGTAAAAAGGG+AGG - chr3.2:89439803-89439822 MS.gene42320:intron 45.0%
GCGTTTCAAGGTAGAAGATG+AGG + chr3.2:89439862-89439881 None:intergenic 45.0%
GCTCACTGAGAACTTATAGC+TGG + chr3.2:89438851-89438870 None:intergenic 45.0%
GGCTGTATGACATCCGATAA+AGG - chr3.2:89438915-89438934 MS.gene42320:intron 45.0%
GTAACAATTTCCAACGACGG+GGG - chr3.2:89439111-89439130 MS.gene42320:intron 45.0%
GTAACCAGGACTGTTACAGT+GGG - chr3.2:89439732-89439751 MS.gene42320:intron 45.0%
TAACAATTTCCAACGACGGG+GGG - chr3.2:89439112-89439131 MS.gene42320:intron 45.0%
TATCATGGTGTGGACAAGGA+GGG - chr3.2:89437689-89437708 MS.gene42320:CDS 45.0%
TCAAGGTAGAAGATGAGGAG+GGG + chr3.2:89439857-89439876 None:intergenic 45.0%
TCCACACCATGATAACCATG+TGG + chr3.2:89437683-89437702 None:intergenic 45.0%
TCCACATGGTTATCATGGTG+TGG - chr3.2:89437679-89437698 MS.gene42320:CDS 45.0%
TCGAACATCCTCAATGGACA+GGG + chr3.2:89437084-89437103 None:intergenic 45.0%
TGAGGATGTTCGACAAGTTG+AGG - chr3.2:89437091-89437110 MS.gene42320:CDS 45.0%
TGCACCTGTGTAGATCATGA+TGG - chr3.2:89438894-89438913 MS.gene42320:intron 45.0%
TGCATGCAGATGGTTCTTAG+TGG - chr3.2:89439063-89439082 MS.gene42320:intron 45.0%
TGGTTATCATGGTGTGGACA+AGG - chr3.2:89437685-89437704 MS.gene42320:CDS 45.0%
TTAGCAGCTATAGAGCAAGC+TGG + chr3.2:89437839-89437858 None:intergenic 45.0%
TTATCATGGTGTGGACAAGG+AGG - chr3.2:89437688-89437707 MS.gene42320:CDS 45.0%
! ACTGACTCATGTCCAAGAAG+AGG - chr3.2:89439353-89439372 MS.gene42320:CDS 45.0%
! GAGCTACCAGAATTTCTAGG+CGG - chr3.2:89438867-89438886 MS.gene42320:CDS 45.0%
! GCATATTGACTGGTGGAATG+TGG - chr3.2:89437381-89437400 MS.gene42320:intron 45.0%
! TCCTAAACAGGCTTTGTACG+AGG - chr3.2:89440163-89440182 MS.gene42320:intron 45.0%
! TTTTCTCAAAACCCTGCACG+TGG + chr3.2:89437799-89437818 None:intergenic 45.0%
!! GTCCAGAAGTACTATCCACA+TGG - chr3.2:89437665-89437684 MS.gene42320:intron 45.0%
AACAATTTCCAACGACGGGG+GGG - chr3.2:89439113-89439132 MS.gene42320:intron 50.0%
AGCAGCTCCTCTTTCTCACT+TGG + chr3.2:89439939-89439958 None:intergenic 50.0%
ATCACCTCTCCCAAAGCATG+TGG - chr3.2:89439312-89439331 MS.gene42320:CDS 50.0%
CTCCTCTTTCTCACTTGGCA+TGG + chr3.2:89439934-89439953 None:intergenic 50.0%
GAGCAATTCCCTGTCCATTG+AGG - chr3.2:89437073-89437092 MS.gene42320:CDS 50.0%
GATGAGTTCTCGAGCAGACT+TGG + chr3.2:89438161-89438180 None:intergenic 50.0%
GCAGCAAAAGTAGTGGCAGT+AGG - chr3.2:89437051-89437070 MS.gene42320:CDS 50.0%
GCAGCACCACGAAACTCATT+TGG - chr3.2:89439571-89439590 MS.gene42320:CDS 50.0%
GCCTCGTACAAAGCCTGTTT+AGG + chr3.2:89440167-89440186 None:intergenic 50.0%
GGTAACCAGGACTGTTACAG+TGG - chr3.2:89439731-89439750 MS.gene42320:intron 50.0%
GTAGAAGATGAGGAGGGGTT+TGG + chr3.2:89439852-89439871 None:intergenic 50.0%
GTCGAACATCCTCAATGGAC+AGG + chr3.2:89437085-89437104 None:intergenic 50.0%
GTCTTGCCATGGCCCTTTAT+CGG + chr3.2:89438931-89438950 None:intergenic 50.0%
TCACCTCTCCCAAAGCATGT+GGG - chr3.2:89439313-89439332 MS.gene42320:CDS 50.0%
TGACATCCGATAAAGGGCCA+TGG - chr3.2:89438922-89438941 MS.gene42320:intron 50.0%
TGACTGGTGGAATGTGGACA+TGG - chr3.2:89437387-89437406 MS.gene42320:intron 50.0%
TGCCATGCCAAGTGAGAAAG+AGG - chr3.2:89439929-89439948 MS.gene42320:CDS 50.0%
TGTGGGCCAACATGATCCAA+TGG - chr3.2:89437472-89437491 MS.gene42320:CDS 50.0%
! AAGCTCACTGAGGCGTTTCA+AGG + chr3.2:89439874-89439893 None:intergenic 50.0%
! GATAAGGTTGGTCATACCGG+TGG - chr3.2:89439478-89439497 MS.gene42320:intron 50.0%
!! ATTCCCACATGCTTTGGGAG+AGG + chr3.2:89439319-89439338 None:intergenic 50.0%
!! GGGGTTTGGCTTTGTGAATC+TGG + chr3.2:89439838-89439857 None:intergenic 50.0%
GATGCCCACTGTAACAGTCC+TGG + chr3.2:89439739-89439758 None:intergenic 55.0%
GGGCCAACATGATCCAATGG+AGG - chr3.2:89437475-89437494 MS.gene42320:CDS 55.0%
!! GGTGCTGCTTGCTTCTCCTT+TGG + chr3.2:89439559-89439578 None:intergenic 55.0%
TTCAATCACCCCCCCGTCGT+TGG + chr3.2:89439124-89439143 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 89436768 89440277 89436768 ID=MS.gene42320
chr3.2 mRNA 89436768 89440277 89436768 ID=MS.gene42320.t1;Parent=MS.gene42320
chr3.2 exon 89440262 89440277 89440262 ID=MS.gene42320.t1.exon1;Parent=MS.gene42320.t1
chr3.2 CDS 89440262 89440277 89440262 ID=cds.MS.gene42320.t1;Parent=MS.gene42320.t1
chr3.2 exon 89439844 89440114 89439844 ID=MS.gene42320.t1.exon2;Parent=MS.gene42320.t1
chr3.2 CDS 89439844 89440114 89439844 ID=cds.MS.gene42320.t1;Parent=MS.gene42320.t1
chr3.2 exon 89439518 89439617 89439518 ID=MS.gene42320.t1.exon3;Parent=MS.gene42320.t1
chr3.2 CDS 89439518 89439617 89439518 ID=cds.MS.gene42320.t1;Parent=MS.gene42320.t1
chr3.2 exon 89439141 89439407 89439141 ID=MS.gene42320.t1.exon4;Parent=MS.gene42320.t1
chr3.2 CDS 89439141 89439407 89439141 ID=cds.MS.gene42320.t1;Parent=MS.gene42320.t1
chr3.2 exon 89438826 89438903 89438826 ID=MS.gene42320.t1.exon5;Parent=MS.gene42320.t1
chr3.2 CDS 89438826 89438903 89438826 ID=cds.MS.gene42320.t1;Parent=MS.gene42320.t1
chr3.2 exon 89438440 89438541 89438440 ID=MS.gene42320.t1.exon6;Parent=MS.gene42320.t1
chr3.2 CDS 89438440 89438541 89438440 ID=cds.MS.gene42320.t1;Parent=MS.gene42320.t1
chr3.2 exon 89438269 89438318 89438269 ID=MS.gene42320.t1.exon7;Parent=MS.gene42320.t1
chr3.2 CDS 89438269 89438318 89438269 ID=cds.MS.gene42320.t1;Parent=MS.gene42320.t1
chr3.2 exon 89438080 89438179 89438080 ID=MS.gene42320.t1.exon8;Parent=MS.gene42320.t1
chr3.2 CDS 89438080 89438179 89438080 ID=cds.MS.gene42320.t1;Parent=MS.gene42320.t1
chr3.2 exon 89437878 89437973 89437878 ID=MS.gene42320.t1.exon9;Parent=MS.gene42320.t1
chr3.2 CDS 89437878 89437973 89437878 ID=cds.MS.gene42320.t1;Parent=MS.gene42320.t1
chr3.2 exon 89437671 89437784 89437671 ID=MS.gene42320.t1.exon10;Parent=MS.gene42320.t1
chr3.2 CDS 89437671 89437784 89437671 ID=cds.MS.gene42320.t1;Parent=MS.gene42320.t1
chr3.2 exon 89437444 89437579 89437444 ID=MS.gene42320.t1.exon11;Parent=MS.gene42320.t1
chr3.2 CDS 89437444 89437579 89437444 ID=cds.MS.gene42320.t1;Parent=MS.gene42320.t1
chr3.2 exon 89437029 89437327 89437029 ID=MS.gene42320.t1.exon12;Parent=MS.gene42320.t1
chr3.2 CDS 89437029 89437327 89437029 ID=cds.MS.gene42320.t1;Parent=MS.gene42320.t1
chr3.2 exon 89436768 89436872 89436768 ID=MS.gene42320.t1.exon13;Parent=MS.gene42320.t1
chr3.2 CDS 89436768 89436872 89436768 ID=cds.MS.gene42320.t1;Parent=MS.gene42320.t1
Gene Sequence

>MS.gene42320

ATGTCAGAACTTCTTTGTGAGTAGTAGTACCTCCTTTGTTACTTTTTATTCTTTTTCATGAATTTAGGTGTTTATTTTTGTCATCATTCTTTGATTGAGCTGAGTTTAGTTTAGTTGAATGAATGAATGAATTATGACACTTTTGAAACACTACTGATTATAGTAGGCAACGATGAAAGAAGAGAGAGTTCAGAGGATGATAAGTGGAAAAGAATTGGAAGTCTTAAAAAGAAAGCAATAAATGCATCATGCAAATTAAGGCATTCTCTTAAGAAGAAAAGAAGCAGCAAAAGTAGTGGCAGTAGGAGCAATTCCCTGTCCATTGAGGATGTTCGACAAGTTGAGGAGCTAAATGCAGTCGATGCATTTCGACAAACACTTCTACTAGACAACTTGCTTCCTTCAATACATGATGACTATCATATGTTATTGAGGTTACACACCATTATGCTTTACTTGCTATGTATGTTCAAGCATGTCCATGAAAATTAATTGAAAAATTGTTTTGGCAAGTTCTTTCAAACACTTTGTCAAGTGCTTATTCCAGTAGATAAGTTCTCATAAGCTATTCATATGCAACCTAGATCTCTTTGCATATTCATAGTATGATATTGCATATTGACTGGTGGAATGTGGACATGGTTTGATGTTACGTTGTAGATTCTTGAAAGCAAGGAAGTTTGATATTGAGAAAGCAAAGCTTATGTGGGCCAACATGATCCAATGGAGGAAAGACTATGGTACAGATACAATTATAGAGGTGAGCAATCTGATTCACTCACTAATCATGTTTCATTTGATAATCTAAACATTGACTCTCTTTTTTTTCATATTTGGTGTTCATACTATACTATGGTTTTTTCTCTATAGGATTTTGATTTCAAGGAGTTGCAAGAAGTCCAGAAGTACTATCCACATGGTTATCATGGTGTGGACAAGGAGGGAAGACCTGTTTATATTGAGAGGCTAGGAAAAGTTGATCCCAATAGGCTTATGCAAGTAACTACCATGGAAAGATATTTGAGATACCACGTGCAGGGTTTTGAGAAAACATTCTCTGTGAAGTTTCCAGCTTGCTCTATAGCTGCTAAGAGACACATAGGTTCCAGCACAACAATTTTGGATGTTCAAGGCGTGGTAAGTTGTCTGTCTAAATGCATGTTTAGATTGACAGTGAGTATGGCTTAATCATGGCGGCACCATGATTTAATTGAAGCTCTAAAATAGCACACTGCAATTCCGCTAAATTCACCATTAGTCCAAAGTCATGCACTAAATGGCTATTGAAAGTTATTCGAATCGAACACCATATTAATTTTAAATTAATTAGGACTTGAGCTTGTATTGACTATTCTTCTTCCCTTTGCTTTATAGGGTTTCAAAAACTTCACCAAGTCTGCTCGAGAACTCATCATTCAGCTGCAGAAGATTGATAGTGATTACTATCCTGAAGTATGTAGAATAAGATAGTTTACATAAACATGTCGATAAGAACTCAAGATTTTTTTTTAAAAGAATATAGTAATAACTCTGAGCATGTTAAACAATAGCTTCTCATATAAACTGAAATTAGTTTCTATATCTCAATGTTTTCATTTAACTTCTCTATAAACTTTTTTCAATTGAGAAGCTCACCTAAACAAGGAACTATGTCTAAATCGTTAAATTTTTAAAAGTTCATTTTTCTAATTATTTGTAGTGTTCCTCATTTAAGATATGTAACTGACATTGTGCAGACACTTCATCAAATGTTTATCATCAATGCTGGTCCTGGTTTTAAGCTTCTATGGAACACAGTGAAAACATTTCTTGATCCCAAAACTACTTCAAAGATTCATGTATGTGTTCATTACTTGAGTTATTGTTTTTTGTGTCAGATTTTTATAAGATTCCATTGAGGTAAGAACCCTTATGTATTTTCCTGAAATAATGATGAATTGAAATTGAATGTTCCATTAGGTTCTTGGAAACAAGTTCCACAGTAAATTACTTGAGATTATCGATGCGAGGTAACTCAACATTTGGTTCTGTTATTGGCATAATTTCTCAATCAACTTATATTGTTATTTGAAAATTCTGACCAGCTATAAGTTCTCAGTGAGCTACCAGAATTTCTAGGCGGTAGTTGCACCTGTGTAGATCATGATGGCTGTATGACATCCGATAAAGGGCCATGGCAAGACCAAAACATTTTAAAGGTTTTCCACTTATTATTAATCATAGGATTCATACTACATCTTAACCTGGTTTTTGGTTCTACTTTGCATTTTCTGTGACTCAATTAGAATAGTTGTCTGCATGCAGATGGTTCTTAGTGGTAAAGTGCAATGTTCTAAACAAATCGTAACAATTTCCAACGACGGGGGGGTGATTGAATGTGATAAAACATCTTTTCCAAAGGTACAGTTTTTCATTTCTATCTTAGACGCTGCATGATGTGATGTAATAATTATCACTTGCTATAATCCTTTGAATTTTGGTTACTGAGTACAGGCAAAAAGTGGCTATACATCTACTGGAGAATCAGTATCTGAAGTTGAAGATATCACCTCTCCCAAAGCATGTGGGAATTCTATGAACCCTATACTGACTCATGTCCAAGAAGAGGCAAGTGATAGTACATTAATTACAAGGTTACACAAAACAAAAACGTTGCAACGAATAACAAATAAATATAACTGTTTTTATACTCGTCTAGGCAAGATTTGTTGATAAGGTTGGTCATACCGGTGGTTTTCCTGAGTATGATGAATATGTTCCCATGGTTGACAAGATTATTGATGTTGGACCAAAGGAGAAGCAAGCAGCACCACGAAACTCATTTGGCTCAAAAGGTGAGAATAGGTTTATACTACAGATTAGGATATTTAGGTTCCATTTATATTGGATGTCAAACATCTCGTTGATACTTAGTAGCAGTCATTAAAGAATCTTTATGGCATGGATGCAGAAAATCTGCTTTTGGTAACCAGGACTGTTACAGTGGGCATCGTGTTTGCCCTTTTTGCCTTTGTTCGAACAATAGCATTTCGTGTGACAAAGGGAGTAAAAAGGGAGGAACTTGCTACCAGATTCACAAAGCCAAACCCCTCCTCATCTTCTACCTTGAAACGCCTCAGTGAGCTTGAAAAAAATGTTGACATACTACAGTCAAAACTTAATGCCATGCCAAGTGAGAAAGAGGAGCTGCTGAATGCTGCAGTTTATCGTGTGGATGCATTGGAAGCAGAGCTCATTGCTACAAAGAAGGTAACTGTATTTCATTTCAAATCAAATTATATATCATGTAGATTTTTTTGCCACGTCATTGTTAAGAACTTCTTTAACTTTAGGTGTGTACATGATGTACGCAAGATTGTTCAAAAAATTGTTATGATAATCTAGCATGTTCAATTTCCTAAACAGGCTTTGTACGAGGCTTTAATGAGACAAGAAGAACTTTTGGCATACATAGACAGTCGGGAAAAAAGCAAATTCAAGGTAAGTCAAAAGTTAAGGCGTCTTGTCTAG
Protein sequence

>MS.gene42320.t1

MSELLLGNDERRESSEDDKWKRIGSLKKKAINASCKLRHSLKKKRSSKSSGSRSNSLSIEDVRQVEELNAVDAFRQTLLLDNLLPSIHDDYHMLLRFLKARKFDIEKAKLMWANMIQWRKDYGTDTIIEDFDFKELQEVQKYYPHGYHGVDKEGRPVYIERLGKVDPNRLMQVTTMERYLRYHVQGFEKTFSVKFPACSIAAKRHIGSSTTILDVQGVGFKNFTKSARELIIQLQKIDSDYYPETLHQMFIINAGPGFKLLWNTVKTFLDPKTTSKIHVLGNKFHSKLLEIIDASELPEFLGGSCTCVDHDGCMTSDKGPWQDQNILKMVLSGKVQCSKQIVTISNDGGVIECDKTSFPKAKSGYTSTGESVSEVEDITSPKACGNSMNPILTHVQEEARFVDKVGHTGGFPEYDEYVPMVDKIIDVGPKEKQAAPRNSFGSKENLLLVTRTVTVGIVFALFAFVRTIAFRVTKGVKREELATRFTKPNPSSSSTLKRLSELEKNVDILQSKLNAMPSEKEELLNAAVYRVDALEAELIATKKALYEALMRQEELLAYIDSREKSKFKVSQKLRRLV