Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42398.t1 | XP_003623798.2 | 95.8 | 525 | 11 | 1 | 1 | 525 | 1 | 514 | 7.20E-256 | 892.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42398.t1 | A0JJX5 | 37.5 | 464 | 252 | 10 | 1 | 432 | 1 | 458 | 6.5e-80 | 299.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42398.t1 | G7L1E7 | 95.8 | 525 | 11 | 1 | 1 | 525 | 1 | 514 | 5.2e-256 | 892.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055331 | MS.gene42398 | 0.816426 | 5.56E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42398.t1 | MTR_7g075790 | 96.000 | 525 | 10 | 1 | 1 | 525 | 1 | 514 | 0.0 | 1007 |
| MS.gene42398.t1 | MTR_8g035590 | 81.107 | 524 | 85 | 3 | 1 | 523 | 1 | 511 | 0.0 | 790 |
| MS.gene42398.t1 | MTR_4g115660 | 36.790 | 405 | 244 | 8 | 15 | 413 | 15 | 413 | 1.36e-84 | 273 |
| MS.gene42398.t1 | MTR_4g115660 | 40.385 | 104 | 59 | 2 | 262 | 362 | 440 | 543 | 1.44e-14 | 76.6 |
| MS.gene42398.t1 | MTR_3g106660 | 37.164 | 409 | 236 | 11 | 17 | 417 | 17 | 412 | 1.10e-79 | 260 |
| MS.gene42398.t1 | MTR_3g106660 | 37.374 | 99 | 61 | 1 | 262 | 359 | 439 | 537 | 4.21e-12 | 68.9 |
| MS.gene42398.t1 | MTR_4g073400 | 33.151 | 365 | 230 | 8 | 38 | 395 | 38 | 395 | 1.25e-61 | 211 |
| MS.gene42398.t1 | MTR_1g094810 | 34.197 | 386 | 234 | 11 | 4 | 378 | 3 | 379 | 3.44e-61 | 210 |
| MS.gene42398.t1 | MTR_1g025550 | 32.653 | 343 | 220 | 6 | 58 | 395 | 59 | 395 | 1.59e-53 | 189 |
| MS.gene42398.t1 | MTR_2g072180 | 25.676 | 296 | 196 | 11 | 68 | 343 | 74 | 365 | 1.00e-12 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42398.t1 | AT3G61050 | 74.952 | 523 | 117 | 2 | 1 | 523 | 1 | 509 | 0.0 | 744 |
| MS.gene42398.t1 | AT3G61050 | 74.952 | 523 | 117 | 2 | 1 | 523 | 1 | 509 | 0.0 | 744 |
| MS.gene42398.t1 | AT3G61030 | 60.519 | 347 | 71 | 8 | 18 | 364 | 1 | 281 | 7.87e-127 | 380 |
| MS.gene42398.t1 | AT3G60950 | 59.366 | 347 | 82 | 6 | 18 | 364 | 1 | 288 | 7.52e-124 | 376 |
| MS.gene42398.t1 | AT1G05500 | 40.609 | 394 | 222 | 8 | 1 | 388 | 1 | 388 | 3.64e-97 | 305 |
| MS.gene42398.t1 | AT1G05500 | 38.144 | 97 | 59 | 1 | 262 | 357 | 434 | 530 | 9.04e-13 | 71.2 |
| MS.gene42398.t1 | AT5G04220 | 35.813 | 363 | 209 | 9 | 61 | 416 | 62 | 407 | 1.01e-66 | 225 |
| MS.gene42398.t1 | AT5G04220 | 35.933 | 359 | 206 | 9 | 65 | 416 | 4 | 345 | 1.03e-65 | 221 |
| MS.gene42398.t1 | AT1G05500 | 41.600 | 250 | 135 | 7 | 144 | 388 | 1 | 244 | 2.04e-56 | 194 |
| MS.gene42398.t1 | AT1G05500 | 38.144 | 97 | 59 | 1 | 262 | 357 | 290 | 386 | 1.06e-12 | 70.5 |
| MS.gene42398.t1 | AT1G20080 | 30.000 | 400 | 260 | 9 | 1 | 395 | 11 | 395 | 1.46e-55 | 195 |
| MS.gene42398.t1 | AT1G20080 | 30.000 | 400 | 260 | 9 | 1 | 395 | 11 | 395 | 1.46e-55 | 195 |
| MS.gene42398.t1 | AT1G20080 | 30.000 | 400 | 260 | 9 | 1 | 395 | 11 | 395 | 1.46e-55 | 195 |
| MS.gene42398.t1 | AT1G20080 | 30.000 | 400 | 260 | 9 | 1 | 395 | 11 | 395 | 1.46e-55 | 195 |
| MS.gene42398.t1 | AT1G20080 | 30.000 | 400 | 260 | 9 | 1 | 395 | 11 | 395 | 1.46e-55 | 195 |
| MS.gene42398.t1 | AT2G20990 | 30.484 | 351 | 231 | 7 | 58 | 401 | 59 | 403 | 1.00e-51 | 185 |
| MS.gene42398.t1 | AT2G20990 | 28.533 | 375 | 231 | 7 | 58 | 401 | 59 | 427 | 4.18e-48 | 175 |
| MS.gene42398.t1 | AT2G20990 | 28.278 | 389 | 228 | 9 | 58 | 401 | 59 | 441 | 5.85e-45 | 167 |
| MS.gene42398.t1 | AT5G04220 | 32.828 | 198 | 113 | 6 | 224 | 416 | 3 | 185 | 9.01e-22 | 96.7 |
| MS.gene42398.t1 | AT3G14590 | 25.926 | 297 | 196 | 11 | 68 | 343 | 70 | 363 | 2.87e-14 | 76.3 |
| MS.gene42398.t1 | AT3G14590 | 25.926 | 297 | 196 | 11 | 68 | 343 | 39 | 332 | 3.59e-14 | 75.9 |
| MS.gene42398.t1 | AT3G14590 | 25.926 | 297 | 196 | 11 | 68 | 343 | 25 | 318 | 3.70e-14 | 75.9 |
| MS.gene42398.t1 | AT1G53590 | 26.144 | 306 | 200 | 11 | 68 | 353 | 70 | 369 | 4.66e-14 | 75.5 |
| MS.gene42398.t1 | AT5G47710 | 43.299 | 97 | 48 | 5 | 260 | 352 | 3 | 96 | 4.79e-11 | 62.0 |
| MS.gene42398.t1 | AT5G47710 | 43.299 | 97 | 48 | 5 | 260 | 352 | 3 | 96 | 4.79e-11 | 62.0 |
| MS.gene42398.t1 | AT5G47710 | 43.299 | 97 | 48 | 5 | 260 | 352 | 3 | 96 | 4.79e-11 | 62.0 |
| MS.gene42398.t1 | AT5G47710 | 43.299 | 97 | 48 | 5 | 260 | 352 | 3 | 96 | 4.79e-11 | 62.0 |
Find 146 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTAAGTCGTCTCTATTA+AGG | 0.184837 | 7.1:+27419659 | None:intergenic |
| TGGTGATCCTAATATTGTTT+TGG | 0.213144 | 7.1:-27416383 | MS.gene42398:CDS |
| CTGAAAGAGGAAGGAGTTAT+TGG | 0.221560 | 7.1:-27413830 | MS.gene42398:CDS |
| ATAACAACTTGAATCCAATT+TGG | 0.233940 | 7.1:-27414914 | MS.gene42398:CDS |
| TGTTGCGTCAATTCCTATTC+AGG | 0.249460 | 7.1:-27416347 | MS.gene42398:intron |
| TCAACACCCAAAACAATATT+AGG | 0.266728 | 7.1:+27416376 | None:intergenic |
| TCGAATTCCTCATTCCAAAT+TGG | 0.268535 | 7.1:+27414900 | None:intergenic |
| AGCAAATGATCTAAAGAATA+TGG | 0.282376 | 7.1:-27415012 | MS.gene42398:CDS |
| TTCAGAGTGTAATCAATTCT+AGG | 0.288525 | 7.1:+27415594 | None:intergenic |
| CTTTAAGTCGTCTCTATTAA+GGG | 0.346751 | 7.1:+27419660 | None:intergenic |
| TTGGAATATAACACGGATAA+TGG | 0.354649 | 7.1:+27416219 | None:intergenic |
| CAGCTTAGTCTAACCTGAAT+AGG | 0.359538 | 7.1:+27416334 | None:intergenic |
| ATATTTCTGGGAGTATTATT+CGG | 0.362777 | 7.1:-27420958 | MS.gene42398:CDS |
| ACAGGGAAAGATATCCATTC+AGG | 0.383895 | 7.1:+27419616 | None:intergenic |
| ATTATTCGGCGTAGCATTGA+TGG | 0.390520 | 7.1:-27420944 | MS.gene42398:CDS |
| GGAAGTTTGACGGCACTTCC+TGG | 0.392579 | 7.1:-27415561 | MS.gene42398:CDS |
| TCAGTAGTTGGTTCTGGTGC+TGG | 0.393526 | 7.1:-27413776 | MS.gene42398:CDS |
| GGAATTGTTGGCAGTGGGCT+TGG | 0.394317 | 7.1:-27413656 | MS.gene42398:CDS |
| CATCGGATTGTTGTTCCACT+TGG | 0.398534 | 7.1:-27415382 | MS.gene42398:CDS |
| AAACCTCGACAGTGAGTGAT+TGG | 0.400951 | 7.1:+27414853 | None:intergenic |
| CTAAAGAATATGGAAATGAT+TGG | 0.409580 | 7.1:-27415002 | MS.gene42398:CDS |
| GCAGCATCAGTAGTTGGTTC+TGG | 0.412024 | 7.1:-27413782 | MS.gene42398:CDS |
| AGGCACACCTGCTCATATAC+AGG | 0.414272 | 7.1:+27419598 | None:intergenic |
| GGTGCTGGACTCGTTGGAAC+TGG | 0.416389 | 7.1:-27413761 | MS.gene42398:CDS |
| GTGTAATCAATTCTAGGCTT+TGG | 0.419916 | 7.1:+27415600 | None:intergenic |
| AGTGGAATTGGTGCTGGAGC+TGG | 0.421440 | 7.1:-27413710 | MS.gene42398:CDS |
| ACTGGAATCGGCGCTGGAGC+TGG | 0.428890 | 7.1:-27413743 | MS.gene42398:CDS |
| GCTTCAGTTGAAGGATCTCC+AGG | 0.430591 | 7.1:-27416248 | MS.gene42398:intron |
| ATACCTTTGCAATTCTCTTA+CGG | 0.435021 | 7.1:+27420890 | None:intergenic |
| GGAGCTGGAATTGTTGGCAG+TGG | 0.438232 | 7.1:-27413662 | MS.gene42398:CDS |
| GGGCTTGGTGCCGTTGGCAG+TGG | 0.438797 | 7.1:-27413641 | MS.gene42398:CDS |
| GGAATGGTGGGAAGTGGAAT+TGG | 0.440702 | 7.1:-27413722 | MS.gene42398:CDS |
| TCGAGGAACCTTGAGAATAA+AGG | 0.442200 | 7.1:-27414206 | MS.gene42398:intron |
| AGTGGATTCGGTGCTGGAGC+TGG | 0.442751 | 7.1:-27413677 | MS.gene42398:CDS |
| GGAATGGTGGGAAGTGGATT+CGG | 0.455276 | 7.1:-27413689 | MS.gene42398:CDS |
| CGGATTGTTGTTCCACTTGG+TGG | 0.456780 | 7.1:-27415379 | MS.gene42398:CDS |
| AACTTCAACGAAGAAATTCC+AGG | 0.459075 | 7.1:+27417732 | None:intergenic |
| CAGTCACTTTAAGTATTCCC+TGG | 0.459434 | 7.1:+27415042 | None:intergenic |
| GCAGTTGACGTTAAACTCCT+TGG | 0.462122 | 7.1:-27419685 | MS.gene42398:CDS |
| CTTGAATCCAATTTGGAATG+AGG | 0.464090 | 7.1:-27414907 | MS.gene42398:CDS |
| GTCCAAGTTGTGGCCATTTG+TGG | 0.464860 | 7.1:-27419323 | MS.gene42398:CDS |
| GGCAGTGGACTGAGCAAGGC+AGG | 0.466321 | 7.1:-27413626 | MS.gene42398:CDS |
| AATGGACATTGATTTCCGTT+GGG | 0.469120 | 7.1:-27416407 | MS.gene42398:CDS |
| TAATGGACATTGATTTCCGT+TGG | 0.470814 | 7.1:-27416408 | MS.gene42398:CDS |
| AATTGGTGCTGGAGCTGGAA+TGG | 0.471647 | 7.1:-27413705 | MS.gene42398:CDS |
| TGCCACAAATGGCCACAACT+TGG | 0.473030 | 7.1:+27419321 | None:intergenic |
| CACGGATAATGGTGAAAACC+TGG | 0.473508 | 7.1:+27416230 | None:intergenic |
| TTAGAAGAGTATAGACCTCC+TGG | 0.475646 | 7.1:-27417750 | MS.gene42398:CDS |
| GTTGGAACTGGAATCGGCGC+TGG | 0.475798 | 7.1:-27413749 | MS.gene42398:CDS |
| TAAAGAATATGGAAATGATT+GGG | 0.477054 | 7.1:-27415001 | MS.gene42398:CDS |
| GGCAGTTGGCGGAAGTTTGA+CGG | 0.479540 | 7.1:-27415571 | MS.gene42398:CDS |
| TTCATGGGCAGGACAATCAC+AGG | 0.480614 | 7.1:-27413599 | MS.gene42398:CDS |
| TCTGCTTCCACGTTAATAAG+TGG | 0.480823 | 7.1:+27414298 | None:intergenic |
| GAGCTGGAATTGTTGGCAGT+GGG | 0.481909 | 7.1:-27413661 | MS.gene42398:CDS |
| TATTTATACCTTTATTCTCA+AGG | 0.481933 | 7.1:+27414198 | None:intergenic |
| GGTGCTGGAGCTGGAATTGT+TGG | 0.485490 | 7.1:-27413668 | MS.gene42398:CDS |
| GTGGGAAGTGGATTCGGTGC+TGG | 0.485823 | 7.1:-27413683 | MS.gene42398:CDS |
| GGCAGTGGGCTTGGTGCCGT+TGG | 0.486406 | 7.1:-27413647 | MS.gene42398:CDS |
| TCTTTAATGTGGAGGAAAGT+GGG | 0.487364 | 7.1:-27413532 | MS.gene42398:CDS |
| ATCTTTCCCTGTATATGAGC+AGG | 0.487917 | 7.1:-27419605 | MS.gene42398:intron |
| GAGCAAGGCAGGAAAGTTCA+TGG | 0.488649 | 7.1:-27413615 | MS.gene42398:CDS |
| GGACTCGTTGGAACTGGAAT+CGG | 0.491658 | 7.1:-27413755 | MS.gene42398:CDS |
| AGTCACTTTAAGTATTCCCT+GGG | 0.492552 | 7.1:+27415043 | None:intergenic |
| ATCTACTCCTGTCTTTAATG+TGG | 0.492962 | 7.1:-27413543 | MS.gene42398:CDS |
| ATTGAAAGTAAAAGATAAGA+AGG | 0.493082 | 7.1:-27414230 | MS.gene42398:CDS |
| GTGGGAAGTGGAATTGGTGC+TGG | 0.493539 | 7.1:-27413716 | MS.gene42398:CDS |
| GTCTTTAATGTGGAGGAAAG+TGG | 0.495600 | 7.1:-27413533 | MS.gene42398:CDS |
| GTGGTACTCCTGTGGATACT+AGG | 0.497141 | 7.1:-27415360 | MS.gene42398:intron |
| CGAATATGCACAACTACGTA+AGG | 0.497415 | 7.1:+27414969 | None:intergenic |
| AATCGGCGCTGGAGCTGGAA+TGG | 0.499597 | 7.1:-27413738 | MS.gene42398:CDS |
| GTGGTGAAAATTTACCTGAA+TGG | 0.501192 | 7.1:-27419630 | MS.gene42398:CDS |
| GCGTAGCATTGATGGCTGGA+TGG | 0.502557 | 7.1:-27420936 | MS.gene42398:CDS |
| GACGGAGCAGCATCAGTAGT+TGG | 0.508775 | 7.1:-27413788 | MS.gene42398:CDS |
| TTACTCACATCTGCCACAAA+TGG | 0.509266 | 7.1:+27419310 | None:intergenic |
| CAACAATCCGATGAGGCCAT+TGG | 0.515146 | 7.1:+27415392 | None:intergenic |
| GGAGCTGGAATGGTGGGAAG+TGG | 0.515418 | 7.1:-27413695 | MS.gene42398:CDS |
| GGAGCTGGAATGGTGGGAAG+TGG | 0.515418 | 7.1:-27413728 | MS.gene42398:CDS |
| ATGAGGCCATTGGAGCATAT+CGG | 0.516196 | 7.1:+27415402 | None:intergenic |
| CGTGGAAGCAGAAACTGAAA+AGG | 0.516842 | 7.1:-27414287 | MS.gene42398:CDS |
| AAAGGTTACCTCAGCAAGTA+GGG | 0.517219 | 7.1:+27416156 | None:intergenic |
| CAAAGGTTACCTCAGCAAGT+AGG | 0.517568 | 7.1:+27416155 | None:intergenic |
| AAGTTCAGTAAGCTGTCCCT+TGG | 0.527726 | 7.1:-27417714 | MS.gene42398:CDS |
| GGCGCTGGAGCTGGAATGGT+GGG | 0.527757 | 7.1:-27413734 | MS.gene42398:CDS |
| GGTTCTGGTGCTGGACTCGT+TGG | 0.530249 | 7.1:-27413767 | MS.gene42398:CDS |
| ATATGCTCCAATGGCCTCAT+CGG | 0.533627 | 7.1:-27415399 | MS.gene42398:CDS |
| CGTAGCATTGATGGCTGGAT+GGG | 0.533942 | 7.1:-27420935 | MS.gene42398:CDS |
| TTCGGCGTAGCATTGATGGC+TGG | 0.540151 | 7.1:-27420940 | MS.gene42398:CDS |
| TGATCTGGAGCTTAAACCCC+AGG | 0.542723 | 7.1:-27415060 | MS.gene42398:CDS |
| CGGCGCTGGAGCTGGAATGG+TGG | 0.546378 | 7.1:-27413735 | MS.gene42398:CDS |
| AACCTCGACAGTGAGTGATT+GGG | 0.548907 | 7.1:+27414854 | None:intergenic |
| CGTTGGCAGTGGACTGAGCA+AGG | 0.551865 | 7.1:-27413630 | MS.gene42398:CDS |
| CGACTTGATTGCAGAAGACA+AGG | 0.553113 | 7.1:-27414880 | MS.gene42398:CDS |
| ATTGGGCAAGATAAACGATT+GGG | 0.553397 | 7.1:-27414334 | MS.gene42398:CDS |
| AGGCAGGAAAGTTCATGGGC+AGG | 0.553405 | 7.1:-27413610 | MS.gene42398:CDS |
| GATTACACTCTGAAGGCAGT+TGG | 0.555212 | 7.1:-27415585 | MS.gene42398:CDS |
| CTTTCCTCCACATTAAAGAC+AGG | 0.556324 | 7.1:+27413536 | None:intergenic |
| TAGAATTGATTACACTCTGA+AGG | 0.557093 | 7.1:-27415592 | MS.gene42398:CDS |
| TCCACTTGGTGGTACTCCTG+TGG | 0.560366 | 7.1:-27415368 | MS.gene42398:CDS |
| AGGAAGAAACTGAAAGAGGA+AGG | 0.561072 | 7.1:-27413839 | MS.gene42398:CDS |
| AAGGGATCTCTTCTGCGAGT+TGG | 0.564915 | 7.1:+27416200 | None:intergenic |
| TACACTCTGAAGGCAGTTGG+CGG | 0.565095 | 7.1:-27415582 | MS.gene42398:CDS |
| ATGGACATTGATTTCCGTTG+GGG | 0.568773 | 7.1:-27416406 | MS.gene42398:CDS |
| TACTCCTGTCTTTAATGTGG+AGG | 0.574175 | 7.1:-27413540 | MS.gene42398:CDS |
| CATTGGGCAAGATAAACGAT+TGG | 0.574761 | 7.1:-27414335 | MS.gene42398:CDS |
| CGTCTCTATTAAGGGATCCA+AGG | 0.577189 | 7.1:+27419668 | None:intergenic |
| ACAAGCAGCTGTCCAAGTTG+TGG | 0.582444 | 7.1:-27419333 | MS.gene42398:CDS |
| AGAAAATGACACTAGAACAA+AGG | 0.582456 | 7.1:-27413859 | MS.gene42398:CDS |
| TGTTGTTGCCCTACTTGCTG+AGG | 0.583278 | 7.1:-27416164 | MS.gene42398:intron |
| TCAATCATATCTGAAAGTCC+AGG | 0.587718 | 7.1:+27415543 | None:intergenic |
| TTGTTACCGATATGCTCCAA+TGG | 0.587786 | 7.1:-27415408 | MS.gene42398:CDS |
| GACATTGATTTCCGTTGGGG+TGG | 0.590508 | 7.1:-27416403 | MS.gene42398:CDS |
| ACAAAGGAAGAAACTGAAAG+AGG | 0.591207 | 7.1:-27413843 | MS.gene42398:CDS |
| ATTTAACAAGGAAGAACAGA+TGG | 0.593114 | 7.1:-27413897 | MS.gene42398:CDS |
| GGTGCTGGAGCTGGAATGGT+GGG | 0.593307 | 7.1:-27413701 | MS.gene42398:CDS |
| AGCAAGGCAGGAAAGTTCAT+GGG | 0.593411 | 7.1:-27413614 | MS.gene42398:CDS |
| CTTGCTCAGTCCACTGCCAA+CGG | 0.593603 | 7.1:+27413631 | None:intergenic |
| GACAGGAGTAGATGAACCGC+TGG | 0.594016 | 7.1:+27413553 | None:intergenic |
| TGGTGCTGGAGCTGGAATGG+TGG | 0.595978 | 7.1:-27413702 | MS.gene42398:CDS |
| CTTTAATGTGGAGGAAAGTG+GGG | 0.602558 | 7.1:-27413531 | MS.gene42398:CDS |
| CTGCGAGTTGGAATATAACA+CGG | 0.615766 | 7.1:+27416212 | None:intergenic |
| AGTACAATGGACGCGCTAGA+CGG | 0.619163 | 7.1:-27413806 | MS.gene42398:CDS |
| AGGAGTTATTGGAAGTACAA+TGG | 0.624734 | 7.1:-27413819 | MS.gene42398:CDS |
| CAGGGCAAACTGTATCGAGA+AGG | 0.626227 | 7.1:-27413580 | MS.gene42398:CDS |
| TCACACTACCTAGTATCCAC+AGG | 0.626835 | 7.1:+27415352 | None:intergenic |
| GACGACTTAAAGAAAATCTG+TGG | 0.628230 | 7.1:-27419649 | MS.gene42398:CDS |
| ACAACAACAGCAGAAATGCA+AGG | 0.628716 | 7.1:+27416181 | None:intergenic |
| GTAAAAGATAAGAAGGATCG+AGG | 0.631810 | 7.1:-27414223 | MS.gene42398:CDS |
| TTTAATGTGGAGGAAAGTGG+GGG | 0.634849 | 7.1:-27413530 | MS.gene42398:CDS |
| GACCCAATCACTCACTGTCG+AGG | 0.635610 | 7.1:-27414856 | MS.gene42398:intron |
| GGTCTATACTCTTCTAATAG+CGG | 0.643171 | 7.1:+27417756 | None:intergenic |
| CAACAACAGCAGAAATGCAA+GGG | 0.643698 | 7.1:+27416182 | None:intergenic |
| ACTCTTTAAAGTCAAAACAA+AGG | 0.644094 | 7.1:-27414943 | MS.gene42398:CDS |
| TTTCTATCATGAATTTAACA+AGG | 0.648565 | 7.1:-27413909 | MS.gene42398:CDS |
| AAGCCGTAAGAGAATTGCAA+AGG | 0.648972 | 7.1:-27420893 | MS.gene42398:intron |
| CTGAAAAGGAAATTGAACTG+AGG | 0.654965 | 7.1:-27414273 | MS.gene42398:CDS |
| TATTAGGATCACCACCCCAA+CGG | 0.666944 | 7.1:+27416392 | None:intergenic |
| TCCACAGGAGTACCACCAAG+TGG | 0.679811 | 7.1:+27415367 | None:intergenic |
| GAATATGCACAACTACGTAA+GGG | 0.686841 | 7.1:+27414970 | None:intergenic |
| GGCACACCTGCTCATATACA+GGG | 0.691019 | 7.1:+27419599 | None:intergenic |
| AAAATTGCCACTTATTAACG+TGG | 0.700041 | 7.1:-27414305 | MS.gene42398:CDS |
| GTATCGAGAAGGAGTGCCAG+CGG | 0.703865 | 7.1:-27413569 | MS.gene42398:CDS |
| GTCACTTTAAGTATTCCCTG+GGG | 0.708077 | 7.1:+27415044 | None:intergenic |
| GATCTGGAGCTTAAACCCCA+GGG | 0.715206 | 7.1:-27415059 | MS.gene42398:CDS |
| TCATGGGCAGGACAATCACA+GGG | 0.718450 | 7.1:-27413598 | MS.gene42398:CDS |
| AGTGGAACAACAATCCGATG+AGG | 0.732800 | 7.1:+27415385 | None:intergenic |
| TTCAACGAAGAAATTCCAGG+AGG | 0.772265 | 7.1:+27417735 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 27413511 | 27420998 | 27413511 | ID=MS.gene42398 |
| chr7.1 | mRNA | 27413511 | 27420998 | 27413511 | ID=MS.gene42398.t1;Parent=MS.gene42398 |
| chr7.1 | exon | 27420894 | 27420998 | 27420894 | ID=MS.gene42398.t1.exon1;Parent=MS.gene42398.t1 |
| chr7.1 | CDS | 27420894 | 27420998 | 27420894 | ID=cds.MS.gene42398.t1;Parent=MS.gene42398.t1 |
| chr7.1 | exon | 27419606 | 27419707 | 27419606 | ID=MS.gene42398.t1.exon2;Parent=MS.gene42398.t1 |
| chr7.1 | CDS | 27419606 | 27419707 | 27419606 | ID=cds.MS.gene42398.t1;Parent=MS.gene42398.t1 |
| chr7.1 | exon | 27419318 | 27419368 | 27419318 | ID=MS.gene42398.t1.exon3;Parent=MS.gene42398.t1 |
| chr7.1 | CDS | 27419318 | 27419368 | 27419318 | ID=cds.MS.gene42398.t1;Parent=MS.gene42398.t1 |
| chr7.1 | exon | 27417691 | 27417811 | 27417691 | ID=MS.gene42398.t1.exon4;Parent=MS.gene42398.t1 |
| chr7.1 | CDS | 27417691 | 27417811 | 27417691 | ID=cds.MS.gene42398.t1;Parent=MS.gene42398.t1 |
| chr7.1 | exon | 27416348 | 27416466 | 27416348 | ID=MS.gene42398.t1.exon5;Parent=MS.gene42398.t1 |
| chr7.1 | CDS | 27416348 | 27416466 | 27416348 | ID=cds.MS.gene42398.t1;Parent=MS.gene42398.t1 |
| chr7.1 | exon | 27416165 | 27416263 | 27416165 | ID=MS.gene42398.t1.exon6;Parent=MS.gene42398.t1 |
| chr7.1 | CDS | 27416165 | 27416263 | 27416165 | ID=cds.MS.gene42398.t1;Parent=MS.gene42398.t1 |
| chr7.1 | exon | 27415542 | 27415622 | 27415542 | ID=MS.gene42398.t1.exon7;Parent=MS.gene42398.t1 |
| chr7.1 | CDS | 27415542 | 27415622 | 27415542 | ID=cds.MS.gene42398.t1;Parent=MS.gene42398.t1 |
| chr7.1 | exon | 27415361 | 27415446 | 27415361 | ID=MS.gene42398.t1.exon8;Parent=MS.gene42398.t1 |
| chr7.1 | CDS | 27415361 | 27415446 | 27415361 | ID=cds.MS.gene42398.t1;Parent=MS.gene42398.t1 |
| chr7.1 | exon | 27414857 | 27415082 | 27414857 | ID=MS.gene42398.t1.exon9;Parent=MS.gene42398.t1 |
| chr7.1 | CDS | 27414857 | 27415082 | 27414857 | ID=cds.MS.gene42398.t1;Parent=MS.gene42398.t1 |
| chr7.1 | exon | 27414207 | 27414371 | 27414207 | ID=MS.gene42398.t1.exon10;Parent=MS.gene42398.t1 |
| chr7.1 | CDS | 27414207 | 27414371 | 27414207 | ID=cds.MS.gene42398.t1;Parent=MS.gene42398.t1 |
| chr7.1 | exon | 27413511 | 27413933 | 27413511 | ID=MS.gene42398.t1.exon11;Parent=MS.gene42398.t1 |
| chr7.1 | CDS | 27413511 | 27413933 | 27413511 | ID=cds.MS.gene42398.t1;Parent=MS.gene42398.t1 |
| Gene Sequence |
| Protein sequence |
