Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42419.t1 | XP_003623880.1 | 100 | 90 | 0 | 0 | 1 | 90 | 1 | 90 | 2.20E-48 | 201.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42419.t1 | G7L2K4 | 100.0 | 90 | 0 | 0 | 1 | 90 | 1 | 90 | 1.6e-48 | 201.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054733 | MS.gene42419 | 0.800502 | 1.40E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42419.t1 | MTR_7g076630 | 100.000 | 90 | 0 | 0 | 1 | 90 | 1 | 90 | 3.45e-65 | 191 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42419.t1 | AT4G00585 | 83.908 | 87 | 11 | 2 | 4 | 90 | 2 | 85 | 2.37e-48 | 148 |
Find 33 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGTAGTCTTTGTAGTCTT+TGG | 0.237115 | 7.2:-87389435 | None:intergenic |
| CAAAGTTCTTGCACCACATT+TGG | 0.239785 | 7.2:-87389409 | None:intergenic |
| GTGTTGCGTTTCCAGTGTTT+AGG | 0.292140 | 7.2:-87385762 | None:intergenic |
| GAGCCAATGGAGGAGATTTC+AGG | 0.296342 | 7.2:+87385700 | MS.gene42419:CDS |
| TGTTGCGTTTCCAGTGTTTA+GGG | 0.348623 | 7.2:-87385761 | None:intergenic |
| GAGATTTCAGGTACAAGGTT+TGG | 0.375661 | 7.2:+87385712 | MS.gene42419:CDS |
| CAAATGTGGTGCAAGAACTT+TGG | 0.398822 | 7.2:+87389410 | MS.gene42419:CDS |
| TGGGAAGGGATTGGACGAAC+AGG | 0.407466 | 7.2:-87389389 | None:intergenic |
| CACCACATTTGGGAAGGGAT+TGG | 0.408752 | 7.2:-87389398 | None:intergenic |
| TTTAGCTGAGAGTTTGAAGA+TGG | 0.461581 | 7.2:-87385823 | None:intergenic |
| AAAGTTCTTGCACCACATTT+GGG | 0.481534 | 7.2:-87389408 | None:intergenic |
| CACGGTAATGGCGGAGCCAA+TGG | 0.484941 | 7.2:+87385687 | MS.gene42419:CDS |
| TAGCTGAGAGTTTGAAGATG+GGG | 0.490985 | 7.2:-87385821 | None:intergenic |
| GTACCTGAAATCTCCTCCAT+TGG | 0.492681 | 7.2:-87385703 | None:intergenic |
| AACACTGCCATCGCTATGTT+CGG | 0.493133 | 7.2:+87385780 | MS.gene42419:CDS |
| TGGAGGAGATTTCAGGTACA+AGG | 0.512900 | 7.2:+87385707 | MS.gene42419:CDS |
| TTAGCTGAGAGTTTGAAGAT+GGG | 0.520876 | 7.2:-87385822 | None:intergenic |
| GGTGGAGCAGATCACGGTAA+TGG | 0.524664 | 7.2:+87385675 | MS.gene42419:CDS |
| TACAAGGTTTGGAGTATGAC+TGG | 0.533279 | 7.2:+87385723 | MS.gene42419:CDS |
| TTCTTGCACCACATTTGGGA+AGG | 0.536045 | 7.2:-87389404 | None:intergenic |
| CTCACTGTCGCCCTAAACAC+TGG | 0.552111 | 7.2:+87385751 | MS.gene42419:CDS |
| GTCCAATCCCTTCCCAAATG+TGG | 0.562513 | 7.2:+87389396 | MS.gene42419:CDS |
| GGGAAGGGATTGGACGAACA+GGG | 0.568151 | 7.2:-87389388 | None:intergenic |
| TCTTGCACCACATTTGGGAA+GGG | 0.579669 | 7.2:-87389403 | None:intergenic |
| CAAACTCTCAGCTAAACTTG+AGG | 0.608144 | 7.2:+87385830 | MS.gene42419:CDS |
| ATTGGACGAACAGGGTGATG+TGG | 0.616151 | 7.2:-87389380 | None:intergenic |
| GGAGGTGGTGGAGCAGATCA+CGG | 0.622572 | 7.2:+87385669 | MS.gene42419:CDS |
| GGTAATGGCGGAGCCAATGG+AGG | 0.641548 | 7.2:+87385690 | MS.gene42419:CDS |
| GACGATACCGAACATAGCGA+TGG | 0.647243 | 7.2:-87385787 | None:intergenic |
| GGAGCAGATCACGGTAATGG+CGG | 0.651187 | 7.2:+87385678 | MS.gene42419:CDS |
| CAGTGTTTAGGGCGACAGTG+AGG | 0.708119 | 7.2:-87385750 | None:intergenic |
| AAGGTTTGGAGTATGACTGG+TGG | 0.712549 | 7.2:+87385726 | MS.gene42419:CDS |
| TGAAGATGGGGATACAAACG+AGG | 0.746465 | 7.2:-87385809 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAATATATACTAGTTA+TGG | - | chr7.2:87389322-87389341 | None:intergenic | 10.0% |
| !! | ATAACTAGTATATATTATAT+TGG | + | chr7.2:87389321-87389340 | MS.gene42419:intron | 10.0% |
| !!! | AAAATTGAAATTTTTTTAGT+TGG | - | chr7.2:87387689-87387708 | None:intergenic | 10.0% |
| !!! | TTATTGTTGTTATTATTATT+TGG | + | chr7.2:87386057-87386076 | MS.gene42419:intron | 10.0% |
| !! | AATTATTAAAGAGAAAATTG+AGG | + | chr7.2:87386898-87386917 | MS.gene42419:intron | 15.0% |
| !! | ATATGAAATAATGATATGTA+AGG | - | chr7.2:87388908-87388927 | None:intergenic | 15.0% |
| !! | TAAATTAATTCCAAATAGTT+AGG | + | chr7.2:87387907-87387926 | MS.gene42419:intron | 15.0% |
| !!! | ATTTTTAAAAGCAGAAAATA+AGG | - | chr7.2:87389009-87389028 | None:intergenic | 15.0% |
| !!! | CAACGTATTTAAAATTAATA+TGG | - | chr7.2:87387569-87387588 | None:intergenic | 15.0% |
| !!! | TATTTTTTTAAAAGCATTAC+AGG | + | chr7.2:87388008-87388027 | MS.gene42419:intron | 15.0% |
| !!! | TTTTTTCCTTCAAAAAATAT+AGG | + | chr7.2:87387743-87387762 | MS.gene42419:intron | 15.0% |
| !! | ACATGATATACAAAAATTTC+TGG | - | chr7.2:87389256-87389275 | None:intergenic | 20.0% |
| !! | ATACTATTATTTGTAACTGT+AGG | + | chr7.2:87387640-87387659 | MS.gene42419:intron | 20.0% |
| !! | ATGATCTGTATAATATCAAT+AGG | + | chr7.2:87389027-87389046 | MS.gene42419:intron | 20.0% |
| !! | CAAATAATTGGTAAAATTTC+TGG | - | chr7.2:87389136-87389155 | None:intergenic | 20.0% |
| !! | CATTACTATCAATAAAAAAG+AGG | - | chr7.2:87387411-87387430 | None:intergenic | 20.0% |
| !! | GTAATATGGAATTGAATATT+GGG | + | chr7.2:87386791-87386810 | MS.gene42419:intron | 20.0% |
| !! | GTTGAATTCAAAATTTCAAA+TGG | + | chr7.2:87387267-87387286 | MS.gene42419:intron | 20.0% |
| !! | TACTATTATTTGTAACTGTA+GGG | + | chr7.2:87387641-87387660 | MS.gene42419:intron | 20.0% |
| !! | TCGTTGTATATTCAAAAAAA+TGG | + | chr7.2:87388264-87388283 | MS.gene42419:intron | 20.0% |
| !! | TGTAATATGGAATTGAATAT+TGG | + | chr7.2:87386790-87386809 | MS.gene42419:intron | 20.0% |
| !! | TGTTAAAGAACACTTAAATT+GGG | - | chr7.2:87388410-87388429 | None:intergenic | 20.0% |
| !!! | AATTTGGCAAATTTTGATTT+TGG | + | chr7.2:87387542-87387561 | MS.gene42419:intron | 20.0% |
| !!! | AATTTTAGATGTCTATCTTT+AGG | + | chr7.2:87387064-87387083 | MS.gene42419:intron | 20.0% |
| !!! | ATTTGACCTATATTTTTTGA+AGG | - | chr7.2:87387752-87387771 | None:intergenic | 20.0% |
| !!! | ATTTTACCAATTATTTGCTT+TGG | + | chr7.2:87389139-87389158 | MS.gene42419:intron | 20.0% |
| !!! | CTAAAATTCTTTTAATGTTC+TGG | - | chr7.2:87387052-87387071 | None:intergenic | 20.0% |
| !!! | CTTTTAAAAAAATAATGCAG+TGG | - | chr7.2:87388002-87388021 | None:intergenic | 20.0% |
| !!! | CTTTTTTATTGATAGTAATG+AGG | + | chr7.2:87387411-87387430 | MS.gene42419:intron | 20.0% |
| !!! | GTATATCATGTTTTCTTTTT+TGG | + | chr7.2:87389265-87389284 | MS.gene42419:intron | 20.0% |
| !!! | TTCTTCTTTTAGGAATATTT+TGG | + | chr7.2:87387449-87387468 | MS.gene42419:intron | 20.0% |
| !!! | TTTAGTGATTTTGTCATATA+TGG | + | chr7.2:87386955-87386974 | MS.gene42419:intron | 20.0% |
| !!! | TTTATTGATGATTTTGTGTT+TGG | + | chr7.2:87386206-87386225 | MS.gene42419:intron | 20.0% |
| !!! | TTTTATTTTCCCTCAAAAAA+TGG | + | chr7.2:87388294-87388313 | MS.gene42419:intron | 20.0% |
| ! | AAAATCAAAACATGGAAATC+TGG | - | chr7.2:87385898-87385917 | None:intergenic | 25.0% |
| ! | AATAATGATATGTAAGGACT+AGG | - | chr7.2:87388902-87388921 | None:intergenic | 25.0% |
| ! | ACTATCAATAAAAAAGAGGT+GGG | - | chr7.2:87387407-87387426 | None:intergenic | 25.0% |
| ! | ATAAAAGCAAACAATGACAA+TGG | - | chr7.2:87387308-87387327 | None:intergenic | 25.0% |
| ! | ATAATGATATGTAAGGACTA+GGG | - | chr7.2:87388901-87388920 | None:intergenic | 25.0% |
| ! | ATTCCATTATACAGTATGAT+AGG | + | chr7.2:87386655-87386674 | MS.gene42419:intron | 25.0% |
| ! | CAATGTTTACTTTGATACAT+TGG | + | chr7.2:87386151-87386170 | MS.gene42419:intron | 25.0% |
| ! | CTATTTATATGCACATAACT+TGG | - | chr7.2:87389089-87389108 | None:intergenic | 25.0% |
| ! | CTATTTCCAAAGCAAATAAT+TGG | - | chr7.2:87389148-87389167 | None:intergenic | 25.0% |
| ! | GAAATTTCCATATCCTAAAA+AGG | - | chr7.2:87387496-87387515 | None:intergenic | 25.0% |
| ! | GGAGATATAAAATCAAAACA+TGG | - | chr7.2:87385906-87385925 | None:intergenic | 25.0% |
| ! | GTGTTAAAGAACACTTAAAT+TGG | - | chr7.2:87388411-87388430 | None:intergenic | 25.0% |
| ! | GTTCTGGCATAAATTATTTA+TGG | - | chr7.2:87387036-87387055 | None:intergenic | 25.0% |
| ! | TACTATCAATAAAAAAGAGG+TGG | - | chr7.2:87387408-87387427 | None:intergenic | 25.0% |
| ! | TATTTCCAACTCATAATTCA+AGG | - | chr7.2:87386419-87386438 | None:intergenic | 25.0% |
| ! | TCAAAAATCTCAAATCACAA+AGG | - | chr7.2:87387199-87387218 | None:intergenic | 25.0% |
| ! | TTCCATTATACAGTATGATA+GGG | + | chr7.2:87386656-87386675 | MS.gene42419:intron | 25.0% |
| !! | GGCAAAATTAAGAATGTTTT+GGG | + | chr7.2:87386078-87386097 | MS.gene42419:intron | 25.0% |
| !! | TAACGGAATCTTAATTTGAT+TGG | + | chr7.2:87386028-87386047 | MS.gene42419:intron | 25.0% |
| !! | TGGCAAAATTAAGAATGTTT+TGG | + | chr7.2:87386077-87386096 | MS.gene42419:intron | 25.0% |
| !!! | TAGCGACAATTTTAATCAAA+GGG | + | chr7.2:87386260-87386279 | MS.gene42419:intron | 25.0% |
| !!! | TTAGTTGTCTTTGTTGTTAT+GGG | + | chr7.2:87387156-87387175 | MS.gene42419:intron | 25.0% |
| !!! | TTATTTGCTTTGGAAATAGA+TGG | + | chr7.2:87389149-87389168 | MS.gene42419:intron | 25.0% |
| !!! | TTGTCATTGTTTGCTTTTAT+TGG | + | chr7.2:87387308-87387327 | MS.gene42419:intron | 25.0% |
| !!! | TTTAGTTGTCTTTGTTGTTA+TGG | + | chr7.2:87387155-87387174 | MS.gene42419:intron | 25.0% |
| !!! | TTTTAGGATATGGAAATTTC+AGG | + | chr7.2:87387496-87387515 | MS.gene42419:intron | 25.0% |
| AAAATTTGCCAAATTCACAG+GGG | - | chr7.2:87387537-87387556 | None:intergenic | 30.0% | |
| AAATTCTAGCACATTTCTTC+TGG | - | chr7.2:87388376-87388395 | None:intergenic | 30.0% | |
| AATAGTTAGGTCGAAACAAT+TGG | + | chr7.2:87387920-87387939 | MS.gene42419:intron | 30.0% | |
| AATCAACGTACTTAAACCAT+GGG | - | chr7.2:87386638-87386657 | None:intergenic | 30.0% | |
| AGTGTTCTTTAACACAATAC+TGG | + | chr7.2:87388416-87388435 | MS.gene42419:intron | 30.0% | |
| ATAAATGAGGGACTTGATAA+CGG | + | chr7.2:87386011-87386030 | MS.gene42419:intron | 30.0% | |
| ATGATTGCTAAACCATGTAA+GGG | + | chr7.2:87386369-87386388 | MS.gene42419:intron | 30.0% | |
| ATTGTTTCGACCTAACTATT+TGG | - | chr7.2:87387920-87387939 | None:intergenic | 30.0% | |
| CAAAATTTGCCAAATTCACA+GGG | - | chr7.2:87387538-87387557 | None:intergenic | 30.0% | |
| CCTAACTAATCTCTTTCTTT+GGG | - | chr7.2:87387851-87387870 | None:intergenic | 30.0% | |
| CTGCACAATCATATGTAATA+TGG | + | chr7.2:87386777-87386796 | MS.gene42419:intron | 30.0% | |
| GCAGTTGTGTTTCATATTTA+CGG | + | chr7.2:87388852-87388871 | MS.gene42419:intron | 30.0% | |
| TCAAAATTTGCCAAATTCAC+AGG | - | chr7.2:87387539-87387558 | None:intergenic | 30.0% | |
| TGATTCCTTGAATTATGAGT+TGG | + | chr7.2:87386411-87386430 | MS.gene42419:intron | 30.0% | |
| TGCTCAACTAATATTATGAC+AGG | - | chr7.2:87388669-87388688 | None:intergenic | 30.0% | |
| TTTAGGCATGATTCATGATT+GGG | + | chr7.2:87387081-87387100 | MS.gene42419:intron | 30.0% | |
| ! | ATGAGTTGGAAATAGACTTT+AGG | + | chr7.2:87386425-87386444 | MS.gene42419:intron | 30.0% |
| ! | CATATGAATCTAAAACACCA+CGG | - | chr7.2:87386334-87386353 | None:intergenic | 30.0% |
| ! | GATTTTGTGTTTGGAAAGTT+TGG | + | chr7.2:87386215-87386234 | MS.gene42419:intron | 30.0% |
| ! | TCTAGCTTAGATGTGAAAAT+TGG | + | chr7.2:87386589-87386608 | MS.gene42419:intron | 30.0% |
| ! | TGAGTTGGAAATAGACTTTA+GGG | + | chr7.2:87386426-87386445 | MS.gene42419:intron | 30.0% |
| ! | TGATACATTGGTTAATATGC+TGG | + | chr7.2:87386163-87386182 | MS.gene42419:intron | 30.0% |
| ! | TGATTTTGTCATATATGGAG+AGG | + | chr7.2:87386960-87386979 | MS.gene42419:intron | 30.0% |
| ! | TTTCTCTTTGAGTGTTGTAT+AGG | + | chr7.2:87388725-87388744 | MS.gene42419:intron | 30.0% |
| ! | TTTTCGTTGCGAATAAATGA+GGG | + | chr7.2:87385999-87386018 | MS.gene42419:intron | 30.0% |
| ! | TTTTTGTGATTCTCAGAAGT+GGG | - | chr7.2:87388140-87388159 | None:intergenic | 30.0% |
| !! | AGAGTTTAGCTTCTTCTTTT+AGG | + | chr7.2:87387439-87387458 | MS.gene42419:intron | 30.0% |
| !! | AGCGACAATTTTAATCAAAG+GGG | + | chr7.2:87386261-87386280 | MS.gene42419:intron | 30.0% |
| !! | GTAGCGACAATTTTAATCAA+AGG | + | chr7.2:87386259-87386278 | MS.gene42419:intron | 30.0% |
| !! | TAGTTGTCTTTGTTGTTATG+GGG | + | chr7.2:87387157-87387176 | MS.gene42419:intron | 30.0% |
| !! | TGGTGTTTTAGATTCATATG+TGG | + | chr7.2:87386334-87386353 | MS.gene42419:intron | 30.0% |
| !!! | AAGAGAACCTTTTTAGGATA+TGG | + | chr7.2:87387486-87387505 | MS.gene42419:intron | 30.0% |
| !!! | CATTGATTTTCAGAGTTAGA+AGG | + | chr7.2:87386546-87386565 | MS.gene42419:intron | 30.0% |
| !!! | TGATGTGCTTTTTTAGTTGT+TGG | + | chr7.2:87387602-87387621 | MS.gene42419:intron | 30.0% |
| !!! | TTATTTTCTAGCTTATCTCG+TGG | + | chr7.2:87386490-87386509 | MS.gene42419:intron | 30.0% |
| AAAGTTCTTGCACCACATTT+GGG | - | chr7.2:87389411-87389430 | None:intergenic | 35.0% | |
| ACACATCCACTACTTATCAT+AGG | - | chr7.2:87387249-87387268 | None:intergenic | 35.0% | |
| AGAGGACTCAGAGAAAAAAA+TGG | + | chr7.2:87386978-87386997 | MS.gene42419:intron | 35.0% | |
| AGCATCCTCACAAATATGTA+AGG | - | chr7.2:87388225-87388244 | None:intergenic | 35.0% | |
| ATACATTAAATCGACACTCC+AGG | + | chr7.2:87388640-87388659 | MS.gene42419:intron | 35.0% | |
| ATGCTAGTCCATGAAAAAAC+AGG | + | chr7.2:87388240-87388259 | MS.gene42419:intron | 35.0% | |
| ATGGAGAATAGTCCAATTGT+TGG | + | chr7.2:87386997-87387016 | MS.gene42419:intron | 35.0% | |
| CATCCTTTGCATTGCAAATA+AGG | - | chr7.2:87388475-87388494 | None:intergenic | 35.0% | |
| CTCCCTATCATACTGTATAA+TGG | - | chr7.2:87386661-87386680 | None:intergenic | 35.0% | |
| CTTTAGGCATGATTCATGAT+TGG | + | chr7.2:87387080-87387099 | MS.gene42419:intron | 35.0% | |
| GAAAAAGATGGGATAGAGTA+AGG | - | chr7.2:87388327-87388346 | None:intergenic | 35.0% | |
| GAATCAACGTACTTAAACCA+TGG | - | chr7.2:87386639-87386658 | None:intergenic | 35.0% | |
| GATGATTGCTAAACCATGTA+AGG | + | chr7.2:87386368-87386387 | MS.gene42419:intron | 35.0% | |
| GCACAAAACAAGATAGGAAT+AGG | + | chr7.2:87386870-87386889 | MS.gene42419:intron | 35.0% | |
| GCCTAACTAATCTCTTTCTT+TGG | - | chr7.2:87387852-87387871 | None:intergenic | 35.0% | |
| GGAAATCTGGTAAAGAAAAC+AGG | - | chr7.2:87385885-87385904 | None:intergenic | 35.0% | |
| GGTATAAACCTGACATAACT+TGG | - | chr7.2:87389068-87389087 | None:intergenic | 35.0% | |
| GTTAATGTTAACGACGATCT+GGG | + | chr7.2:87386112-87386131 | MS.gene42419:intron | 35.0% | |
| TAATATTATGACAGGCAACC+TGG | - | chr7.2:87388661-87388680 | None:intergenic | 35.0% | |
| TACACACCTATGATAAGTAG+TGG | + | chr7.2:87387240-87387259 | MS.gene42419:intron | 35.0% | |
| TATACAGTATGATAGGGAGA+TGG | + | chr7.2:87386662-87386681 | MS.gene42419:intron | 35.0% | |
| TGAATCTACCAAGTTATGTC+AGG | + | chr7.2:87389057-87389076 | MS.gene42419:intron | 35.0% | |
| TGATTCATGATTGGGCATTA+TGG | + | chr7.2:87387089-87387108 | MS.gene42419:intron | 35.0% | |
| TGTATTAACCCCTGTGAATT+TGG | + | chr7.2:87387526-87387545 | MS.gene42419:intron | 35.0% | |
| TGTTAATGTTAACGACGATC+TGG | + | chr7.2:87386111-87386130 | MS.gene42419:intron | 35.0% | |
| TTAGCTGAGAGTTTGAAGAT+GGG | - | chr7.2:87385825-87385844 | None:intergenic | 35.0% | |
| TTAGTCAAAGGACCCAATTT+GGG | + | chr7.2:87386694-87386713 | MS.gene42419:intron | 35.0% | |
| TTCGTAGTCTTTGTAGTCTT+TGG | - | chr7.2:87389438-87389457 | None:intergenic | 35.0% | |
| TTTAGCTGAGAGTTTGAAGA+TGG | - | chr7.2:87385826-87385845 | None:intergenic | 35.0% | |
| ! | ACTCACACCTTTTGTACAAT+GGG | - | chr7.2:87386929-87386948 | None:intergenic | 35.0% |
| ! | CCCAAAGAAAGAGATTAGTT+AGG | + | chr7.2:87387848-87387867 | MS.gene42419:intron | 35.0% |
| ! | CTTTTCTCACATTGTCTCTA+CGG | + | chr7.2:87387333-87387352 | MS.gene42419:intron | 35.0% |
| ! | CTTTTTGTGATTCTCAGAAG+TGG | - | chr7.2:87388141-87388160 | None:intergenic | 35.0% |
| ! | GACTGAAAGAGAACCTTTTT+AGG | + | chr7.2:87387480-87387499 | MS.gene42419:intron | 35.0% |
| ! | GCTGAGTGAACTATTTGTTT+TGG | + | chr7.2:87388953-87388972 | MS.gene42419:intron | 35.0% |
| ! | GTTTTCGTTGCGAATAAATG+AGG | + | chr7.2:87385998-87386017 | MS.gene42419:intron | 35.0% |
| ! | TCTTTGGGAAAAAGAAGAGA+GGG | - | chr7.2:87387836-87387855 | None:intergenic | 35.0% |
| ! | TTCTTTGGGAAAAAGAAGAG+AGG | - | chr7.2:87387837-87387856 | None:intergenic | 35.0% |
| ! | TTGAGTGTTGTATAGGAAGA+AGG | + | chr7.2:87388732-87388751 | MS.gene42419:intron | 35.0% |
| ! | TTTTCTCACATTGTCTCTAC+GGG | + | chr7.2:87387334-87387353 | MS.gene42419:intron | 35.0% |
| ! | TTTTGTGATTCTCAGAAGTG+GGG | - | chr7.2:87388139-87388158 | None:intergenic | 35.0% |
| !! | TTGCCTTATTTGCAATGCAA+AGG | + | chr7.2:87388469-87388488 | MS.gene42419:intron | 35.0% |
| !!! | ACAACGAACCTGTTTTTTCA+TGG | - | chr7.2:87388251-87388270 | None:intergenic | 35.0% |
| !!! | AGGCAAAGAACCATTTTTTG+AGG | - | chr7.2:87388307-87388326 | None:intergenic | 35.0% |
| !!! | GCTTTTTTAGTTGTTGGTGA+GGG | + | chr7.2:87387608-87387627 | MS.gene42419:intron | 35.0% |
| !!! | GGCAAAGAACCATTTTTTGA+GGG | - | chr7.2:87388306-87388325 | None:intergenic | 35.0% |
| !!! | TGCTTTTTTAGTTGTTGGTG+AGG | + | chr7.2:87387607-87387626 | MS.gene42419:intron | 35.0% |
| AACACCACGGACTTACATTA+TGG | - | chr7.2:87386321-87386340 | None:intergenic | 40.0% | |
| AATATGTAAGGCAGCAGCAT+CGG | - | chr7.2:87388213-87388232 | None:intergenic | 40.0% | |
| ACAGTGATTTGAAGACCTTG+GGG | + | chr7.2:87388566-87388585 | MS.gene42419:intron | 40.0% | |
| ACTGCATGGATGTCAAAGAT+GGG | + | chr7.2:87386452-87386471 | MS.gene42419:intron | 40.0% | |
| AGACAGTGATTTGAAGACCT+TGG | + | chr7.2:87388564-87388583 | MS.gene42419:intron | 40.0% | |
| AGCATAAAGTTGGGGAAGAT+GGG | + | chr7.2:87388829-87388848 | MS.gene42419:intron | 40.0% | |
| ATCACTGTCTACAGGATTCA+CGG | - | chr7.2:87388554-87388573 | None:intergenic | 40.0% | |
| CAAACTCTCAGCTAAACTTG+AGG | + | chr7.2:87385830-87385849 | MS.gene42419:CDS | 40.0% | |
| CAAAGTTCTTGCACCACATT+TGG | - | chr7.2:87389412-87389431 | None:intergenic | 40.0% | |
| CAAATGTGGTGCAAGAACTT+TGG | + | chr7.2:87389410-87389429 | MS.gene42419:CDS | 40.0% | |
| CCATTTCATCCACCCAAATT+GGG | - | chr7.2:87386709-87386728 | None:intergenic | 40.0% | |
| GACAGTGATTTGAAGACCTT+GGG | + | chr7.2:87388565-87388584 | MS.gene42419:intron | 40.0% | |
| GAGAATAGTCCAATTGTTGG+AGG | + | chr7.2:87387000-87387019 | MS.gene42419:intron | 40.0% | |
| GATACCATAATGTAAGTCCG+TGG | + | chr7.2:87386314-87386333 | MS.gene42419:intron | 40.0% | |
| GCTCAATGTTGCAAATGAGT+CGG | + | chr7.2:87386839-87386858 | MS.gene42419:intron | 40.0% | |
| GGACGACTTGAATTTCTTTC+TGG | + | chr7.2:87389170-87389189 | MS.gene42419:intron | 40.0% | |
| GGTTTCTCCCATTGTACAAA+AGG | + | chr7.2:87386919-87386938 | MS.gene42419:intron | 40.0% | |
| GTCAACCTCACCAAAATTGT+GGG | - | chr7.2:87388515-87388534 | None:intergenic | 40.0% | |
| GTCTTCAAATCACTGTCTAC+AGG | - | chr7.2:87388562-87388581 | None:intergenic | 40.0% | |
| GTGTGATATAGCTGCATAGT+CGG | - | chr7.2:87388038-87388057 | None:intergenic | 40.0% | |
| GTTAGTCAAAGGACCCAATT+TGG | + | chr7.2:87386693-87386712 | MS.gene42419:intron | 40.0% | |
| GTTGCAGGTGAGAAAAAGAT+GGG | - | chr7.2:87388338-87388357 | None:intergenic | 40.0% | |
| TAGCTGAGAGTTTGAAGATG+GGG | - | chr7.2:87385824-87385843 | None:intergenic | 40.0% | |
| TCCATTTCATCCACCCAAAT+TGG | - | chr7.2:87386710-87386729 | None:intergenic | 40.0% | |
| TCTAGCACATTTCTTCTGGT+CGG | - | chr7.2:87388372-87388391 | None:intergenic | 40.0% | |
| TGCTGCCTTACATATTTGTG+AGG | + | chr7.2:87388217-87388236 | MS.gene42419:intron | 40.0% | |
| TGGAGAGAGATGTTAGTCAA+AGG | + | chr7.2:87386682-87386701 | MS.gene42419:intron | 40.0% | |
| TGGAGTGTAGAGCAATTCTA+TGG | + | chr7.2:87387940-87387959 | MS.gene42419:intron | 40.0% | |
| TGTTGCAGGTGAGAAAAAGA+TGG | - | chr7.2:87388339-87388358 | None:intergenic | 40.0% | |
| TGTTGCGTTTCCAGTGTTTA+GGG | - | chr7.2:87385764-87385783 | None:intergenic | 40.0% | |
| TTGCTAAACCATGTAAGGGT+TGG | + | chr7.2:87386373-87386392 | MS.gene42419:intron | 40.0% | |
| ! | CTCTTTGCTTCCCACAATTT+TGG | + | chr7.2:87388502-87388521 | MS.gene42419:intron | 40.0% |
| ! | GACTCACACCTTTTGTACAA+TGG | - | chr7.2:87386930-87386949 | None:intergenic | 40.0% |
| ! | GAGATTTCAGGTACAAGGTT+TGG | + | chr7.2:87385712-87385731 | MS.gene42419:CDS | 40.0% |
| ! | GTGTAAAAAGAGTGTGTCAG+AGG | + | chr7.2:87388690-87388709 | MS.gene42419:intron | 40.0% |
| ! | TAAGGGTTGGCATTTGAGTT+AGG | + | chr7.2:87386386-87386405 | MS.gene42419:intron | 40.0% |
| ! | TACAAGGTTTGGAGTATGAC+TGG | + | chr7.2:87385723-87385742 | MS.gene42419:CDS | 40.0% |
| ! | TCTAGCTTATCTCGTGGAAA+TGG | + | chr7.2:87386496-87386515 | MS.gene42419:intron | 40.0% |
| ! | TGAGATTTTCACCGATGCAT+GGG | + | chr7.2:87386287-87386306 | MS.gene42419:intron | 40.0% |
| !! | CACAATTTTGGTGAGGTTGA+CGG | + | chr7.2:87388514-87388533 | MS.gene42419:intron | 40.0% |
| !! | GATGTCAAAGATGGGTTAAG+TGG | + | chr7.2:87386460-87386479 | MS.gene42419:intron | 40.0% |
| !! | TGTCTTTGTTGTTATGGGGT+GGG | + | chr7.2:87387161-87387180 | MS.gene42419:intron | 40.0% |
| !! | TTGTCTTTGTTGTTATGGGG+TGG | + | chr7.2:87387160-87387179 | MS.gene42419:intron | 40.0% |
| AACACTGCCATCGCTATGTT+CGG | + | chr7.2:87385780-87385799 | MS.gene42419:CDS | 45.0% | |
| ACAGAATAGCAGCAGCAACT+AGG | - | chr7.2:87389216-87389235 | None:intergenic | 45.0% | |
| ACGTACTTAAACCATGGGAC+TGG | - | chr7.2:87386633-87386652 | None:intergenic | 45.0% | |
| ACTACGTGAGAACAGCTACA+TGG | - | chr7.2:87387126-87387145 | None:intergenic | 45.0% | |
| AGTTCCCTGCAGCATAAAGT+TGG | + | chr7.2:87388819-87388838 | MS.gene42419:intron | 45.0% | |
| ATAGTCCAATTGTTGGAGGC+AGG | + | chr7.2:87387004-87387023 | MS.gene42419:intron | 45.0% | |
| CACTGCATGGATGTCAAAGA+TGG | + | chr7.2:87386451-87386470 | MS.gene42419:intron | 45.0% | |
| CAGCATAAAGTTGGGGAAGA+TGG | + | chr7.2:87388828-87388847 | MS.gene42419:intron | 45.0% | |
| CCCAATTTGGGTGGATGAAA+TGG | + | chr7.2:87386706-87386725 | MS.gene42419:intron | 45.0% | |
| CGTCAACCTCACCAAAATTG+TGG | - | chr7.2:87388516-87388535 | None:intergenic | 45.0% | |
| CTAGCACATTTCTTCTGGTC+GGG | - | chr7.2:87388371-87388390 | None:intergenic | 45.0% | |
| CTCAAATGCCAACCCTTACA+TGG | - | chr7.2:87386384-87386403 | None:intergenic | 45.0% | |
| CTGTGCGCACAAAACAAGAT+AGG | + | chr7.2:87386864-87386883 | MS.gene42419:intron | 45.0% | |
| GCATAAAGTTGGGGAAGATG+GGG | + | chr7.2:87388830-87388849 | MS.gene42419:intron | 45.0% | |
| GTACCTGAAATCTCCTCCAT+TGG | - | chr7.2:87385706-87385725 | None:intergenic | 45.0% | |
| GTGTTGCGTTTCCAGTGTTT+AGG | - | chr7.2:87385765-87385784 | None:intergenic | 45.0% | |
| GTTCCCTGCAGCATAAAGTT+GGG | + | chr7.2:87388820-87388839 | MS.gene42419:intron | 45.0% | |
| TACTTAAACCATGGGACTGG+AGG | - | chr7.2:87386630-87386649 | None:intergenic | 45.0% | |
| TAGCACATTTCTTCTGGTCG+GGG | - | chr7.2:87388370-87388389 | None:intergenic | 45.0% | |
| TAGTCCAATTGTTGGAGGCA+GGG | + | chr7.2:87387005-87387024 | MS.gene42419:intron | 45.0% | |
| TCTTGCACCACATTTGGGAA+GGG | - | chr7.2:87389406-87389425 | None:intergenic | 45.0% | |
| TGAAGATGGGGATACAAACG+AGG | - | chr7.2:87385812-87385831 | None:intergenic | 45.0% | |
| TGGGAAAAAGAAGAGAGGGT+GGG | - | chr7.2:87387832-87387851 | None:intergenic | 45.0% | |
| TGGTATCCAATCCCATGCAT+CGG | - | chr7.2:87386301-87386320 | None:intergenic | 45.0% | |
| TTCCCCAACTTTATGCTGCA+GGG | - | chr7.2:87388826-87388845 | None:intergenic | 45.0% | |
| TTCCCTGCAGCATAAAGTTG+GGG | + | chr7.2:87388821-87388840 | MS.gene42419:intron | 45.0% | |
| TTCTTGCACCACATTTGGGA+AGG | - | chr7.2:87389407-87389426 | None:intergenic | 45.0% | |
| TTGGGAAAAAGAAGAGAGGG+TGG | - | chr7.2:87387833-87387852 | None:intergenic | 45.0% | |
| TTGGGTGGATGAAATGGAGA+AGG | + | chr7.2:87386712-87386731 | MS.gene42419:intron | 45.0% | |
| ! | AAGGTTTGGAGTATGACTGG+TGG | + | chr7.2:87385726-87385745 | MS.gene42419:CDS | 45.0% |
| ! | GTGAGATTTTCACCGATGCA+TGG | + | chr7.2:87386286-87386305 | MS.gene42419:intron | 45.0% |
| ! | TATGCTGCAGGGAACTCTTT+TGG | - | chr7.2:87388815-87388834 | None:intergenic | 45.0% |
| ! | TGGAGGAGATTTCAGGTACA+AGG | + | chr7.2:87385707-87385726 | MS.gene42419:CDS | 45.0% |
| ! | TTTTCACCGATGCATGGGAT+TGG | + | chr7.2:87386292-87386311 | MS.gene42419:intron | 45.0% |
| !! | AGACTTTAGGGTACACTGCA+TGG | + | chr7.2:87386438-87386457 | MS.gene42419:intron | 45.0% |
| !! | GTCTTTGTTGTTATGGGGTG+GGG | + | chr7.2:87387162-87387181 | MS.gene42419:intron | 45.0% |
| !! | TGCTTCCCACAATTTTGGTG+AGG | + | chr7.2:87388507-87388526 | MS.gene42419:intron | 45.0% |
| !! | TTTGGCTTGTTGAGATGTGG+TGG | - | chr7.2:87388190-87388209 | None:intergenic | 45.0% |
| !!! | AAAAAAAATTGATAATAATT+TGG | - | chr7.2:87385927-87385946 | None:intergenic | 5.0% |
| !!! | AATTATTATCAATTTTTTTT+AGG | + | chr7.2:87385927-87385946 | MS.gene42419:intron | 5.0% |
| !!! | ATTATTATCAATTTTTTTTA+GGG | + | chr7.2:87385928-87385947 | MS.gene42419:intron | 5.0% |
| !!! | ATTATTTCATATTTTTTAAA+AGG | + | chr7.2:87388916-87388935 | MS.gene42419:intron | 5.0% |
| ACCTTGGGGAAAACGTTGTG+TGG | + | chr7.2:87388580-87388599 | MS.gene42419:intron | 50.0% | |
| ATTGGACGAACAGGGTGATG+TGG | - | chr7.2:87389383-87389402 | None:intergenic | 50.0% | |
| ATTTCTTCTGGTCGGGGTGT+GGG | - | chr7.2:87388364-87388383 | None:intergenic | 50.0% | |
| CACAATCCCTGCTCAGAACA+AGG | - | chr7.2:87388758-87388777 | None:intergenic | 50.0% | |
| CACCACATTTGGGAAGGGAT+TGG | - | chr7.2:87389401-87389420 | None:intergenic | 50.0% | |
| CTTCCCCAACTTTATGCTGC+AGG | - | chr7.2:87388827-87388846 | None:intergenic | 50.0% | |
| GACGATACCGAACATAGCGA+TGG | - | chr7.2:87385790-87385809 | None:intergenic | 50.0% | |
| GAGCCAATGGAGGAGATTTC+AGG | + | chr7.2:87385700-87385719 | MS.gene42419:CDS | 50.0% | |
| GGAAAAAGAAGAGAGGGTGG+GGG | - | chr7.2:87387830-87387849 | None:intergenic | 50.0% | |
| GGGAAAAAGAAGAGAGGGTG+GGG | - | chr7.2:87387831-87387850 | None:intergenic | 50.0% | |
| GGTGGATGAAATGGAGAAGG+TGG | + | chr7.2:87386715-87386734 | MS.gene42419:intron | 50.0% | |
| GTAGCTGTTCTCACGTAGTG+TGG | + | chr7.2:87387127-87387146 | MS.gene42419:intron | 50.0% | |
| GTCAAAGGACCCAATTTGGG+TGG | + | chr7.2:87386697-87386716 | MS.gene42419:intron | 50.0% | |
| GTCCAATCCCTTCCCAAATG+TGG | + | chr7.2:87389396-87389415 | MS.gene42419:CDS | 50.0% | |
| TGTCTCTACGGGAGAGCAAA+TGG | + | chr7.2:87387345-87387364 | MS.gene42419:intron | 50.0% | |
| TTTGGTGAGGTTGACGGTGA+AGG | + | chr7.2:87388520-87388539 | MS.gene42419:intron | 50.0% | |
| ! | ACCACACAACGTTTTCCCCA+AGG | - | chr7.2:87388584-87388603 | None:intergenic | 50.0% |
| !! | AAGAAGGCCTTGTTCTGAGC+AGG | + | chr7.2:87388748-87388767 | MS.gene42419:intron | 50.0% |
| !! | AGAAGGCCTTGTTCTGAGCA+GGG | + | chr7.2:87388749-87388768 | MS.gene42419:intron | 50.0% |
| !! | CGGTTTGGCTTGTTGAGATG+TGG | - | chr7.2:87388193-87388212 | None:intergenic | 50.0% |
| AAACCATGGGACTGGAGGCA+TGG | - | chr7.2:87386625-87386644 | None:intergenic | 55.0% | |
| ATACCATGCCTCCAGTCCCA+TGG | + | chr7.2:87386619-87386638 | MS.gene42419:intron | 55.0% | |
| CATTTCTTCTGGTCGGGGTG+TGG | - | chr7.2:87388365-87388384 | None:intergenic | 55.0% | |
| CTCACTGTCGCCCTAAACAC+TGG | + | chr7.2:87385751-87385770 | MS.gene42419:CDS | 55.0% | |
| CTCTCCCTGCCTCCAACAAT+TGG | - | chr7.2:87387012-87387031 | None:intergenic | 55.0% | |
| GGGAAGGGATTGGACGAACA+GGG | - | chr7.2:87389391-87389410 | None:intergenic | 55.0% | |
| GGTGGAGCAGATCACGGTAA+TGG | + | chr7.2:87385675-87385694 | MS.gene42419:CDS | 55.0% | |
| TGGGAAGGGATTGGACGAAC+AGG | - | chr7.2:87389392-87389411 | None:intergenic | 55.0% | |
| TTTCTTCTGGTCGGGGTGTG+GGG | - | chr7.2:87388363-87388382 | None:intergenic | 55.0% | |
| ! | CAGTGTTTAGGGCGACAGTG+AGG | - | chr7.2:87385753-87385772 | None:intergenic | 55.0% |
| ! | GGAGCAGATCACGGTAATGG+CGG | + | chr7.2:87385678-87385697 | MS.gene42419:CDS | 55.0% |
| !! | GTAAGGCAGCAGCATCGGTT+TGG | - | chr7.2:87388208-87388227 | None:intergenic | 55.0% |
| GGTGAGGTTGACGGTGAAGG+CGG | + | chr7.2:87388523-87388542 | MS.gene42419:intron | 60.0% | |
| ! | CACGGTAATGGCGGAGCCAA+TGG | + | chr7.2:87385687-87385706 | MS.gene42419:CDS | 60.0% |
| ! | GGTAATGGCGGAGCCAATGG+AGG | + | chr7.2:87385690-87385709 | MS.gene42419:CDS | 60.0% |
| !! | GGAGGTGGTGGAGCAGATCA+CGG | + | chr7.2:87385669-87385688 | MS.gene42419:CDS | 60.0% |
| TCGGGGTGTGGGGTTGTTGC+AGG | - | chr7.2:87388353-87388372 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 87385666 | 87389460 | 87385666 | ID=MS.gene42419 |
| chr7.2 | mRNA | 87385666 | 87389460 | 87385666 | ID=MS.gene42419.t1;Parent=MS.gene42419 |
| chr7.2 | exon | 87385666 | 87385851 | 87385666 | ID=MS.gene42419.t1.exon1;Parent=MS.gene42419.t1 |
| chr7.2 | CDS | 87385666 | 87385851 | 87385666 | ID=cds.MS.gene42419.t1;Parent=MS.gene42419.t1 |
| chr7.2 | exon | 87389374 | 87389460 | 87389374 | ID=MS.gene42419.t1.exon2;Parent=MS.gene42419.t1 |
| chr7.2 | CDS | 87389374 | 87389460 | 87389374 | ID=cds.MS.gene42419.t1;Parent=MS.gene42419.t1 |
| Gene Sequence |
| Protein sequence |
