Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42485.t1 | KEH26817.1 | 71.1 | 769 | 205 | 6 | 1 | 758 | 1 | 763 | 1.20E-304 | 1055.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42485.t1 | Q9LD37 | 51.9 | 767 | 343 | 11 | 5 | 758 | 6 | 759 | 1.5e-210 | 734.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42485.t1 | A0A072UB02 | 71.1 | 769 | 205 | 6 | 1 | 758 | 1 | 763 | 8.8e-305 | 1055.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene006012 | MS.gene42485 | PPI |
MS.gene54751 | MS.gene42485 | PPI |
MS.gene041742 | MS.gene42485 | PPI |
MS.gene42485 | MS.gene33998 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42485.t1 | MTR_6g075290 | 72.042 | 769 | 198 | 6 | 1 | 758 | 1 | 763 | 0.0 | 1074 |
MS.gene42485.t1 | MTR_6g075290 | 67.100 | 769 | 195 | 7 | 1 | 758 | 1 | 722 | 0.0 | 974 |
MS.gene42485.t1 | MTR_5g007630 | 63.089 | 764 | 246 | 7 | 1 | 758 | 1 | 734 | 0.0 | 938 |
MS.gene42485.t1 | MTR_6g075440 | 60.864 | 764 | 268 | 6 | 1 | 758 | 1 | 739 | 0.0 | 931 |
MS.gene42485.t1 | MTR_6g075440 | 60.864 | 764 | 268 | 6 | 1 | 758 | 1 | 739 | 0.0 | 931 |
MS.gene42485.t1 | MTR_6g075390 | 80.284 | 563 | 110 | 1 | 165 | 726 | 88 | 650 | 0.0 | 909 |
MS.gene42485.t1 | MTR_6g075390 | 42.529 | 87 | 44 | 2 | 1 | 86 | 1 | 82 | 2.73e-12 | 70.9 |
MS.gene42485.t1 | MTR_6g477760 | 60.472 | 678 | 254 | 4 | 90 | 755 | 20 | 695 | 0.0 | 798 |
MS.gene42485.t1 | MTR_6g075410 | 59.836 | 610 | 232 | 6 | 156 | 758 | 62 | 665 | 0.0 | 722 |
MS.gene42485.t1 | MTR_6g075290 | 63.704 | 540 | 180 | 5 | 229 | 758 | 28 | 561 | 0.0 | 631 |
MS.gene42485.t1 | MTR_6g076060 | 66.734 | 493 | 121 | 2 | 309 | 758 | 14 | 506 | 0.0 | 620 |
MS.gene42485.t1 | MTR_3g109030 | 37.288 | 590 | 324 | 14 | 187 | 750 | 68 | 637 | 1.55e-118 | 374 |
MS.gene42485.t1 | MTR_2g460590 | 35.823 | 589 | 336 | 14 | 187 | 751 | 38 | 608 | 3.46e-116 | 366 |
MS.gene42485.t1 | MTR_4g058730 | 35.979 | 567 | 335 | 11 | 191 | 744 | 58 | 609 | 1.79e-115 | 362 |
MS.gene42485.t1 | MTR_4g130820 | 36.678 | 578 | 332 | 11 | 191 | 750 | 98 | 659 | 5.19e-112 | 357 |
MS.gene42485.t1 | MTR_3g091080 | 35.714 | 574 | 339 | 11 | 191 | 750 | 80 | 637 | 1.15e-111 | 355 |
MS.gene42485.t1 | MTR_2g094860 | 35.875 | 577 | 342 | 12 | 192 | 755 | 77 | 638 | 7.51e-111 | 353 |
MS.gene42485.t1 | MTR_7g117310 | 35.556 | 585 | 338 | 13 | 191 | 754 | 28 | 594 | 3.14e-109 | 347 |
MS.gene42485.t1 | MTR_8g027755 | 34.412 | 587 | 341 | 13 | 192 | 755 | 85 | 650 | 1.12e-108 | 347 |
MS.gene42485.t1 | MTR_7g117310 | 35.556 | 585 | 338 | 13 | 191 | 754 | 82 | 648 | 1.27e-108 | 347 |
MS.gene42485.t1 | MTR_7g117310 | 35.556 | 585 | 338 | 13 | 191 | 754 | 94 | 660 | 1.92e-108 | 347 |
MS.gene42485.t1 | MTR_1g028370 | 34.142 | 577 | 344 | 14 | 191 | 750 | 82 | 639 | 4.45e-108 | 346 |
MS.gene42485.t1 | MTR_7g034605 | 34.596 | 581 | 343 | 14 | 191 | 750 | 43 | 607 | 1.60e-106 | 340 |
MS.gene42485.t1 | MTR_3g088875 | 34.300 | 586 | 348 | 15 | 186 | 750 | 30 | 599 | 1.10e-101 | 328 |
MS.gene42485.t1 | MTR_1g064240 | 34.130 | 586 | 345 | 13 | 192 | 758 | 71 | 634 | 1.22e-98 | 321 |
MS.gene42485.t1 | MTR_8g464570 | 30.822 | 584 | 363 | 16 | 192 | 751 | 62 | 628 | 1.45e-86 | 287 |
MS.gene42485.t1 | MTR_2g081110 | 28.916 | 581 | 373 | 12 | 192 | 751 | 63 | 624 | 2.87e-81 | 273 |
MS.gene42485.t1 | MTR_7g012260 | 31.472 | 591 | 355 | 14 | 191 | 752 | 108 | 677 | 1.94e-77 | 264 |
MS.gene42485.t1 | MTR_6g075320 | 40.000 | 310 | 141 | 7 | 1 | 309 | 1 | 266 | 2.78e-57 | 197 |
MS.gene42485.t1 | MTR_6g075460 | 64.894 | 94 | 33 | 0 | 665 | 758 | 26 | 119 | 1.49e-31 | 122 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42485.t1 | AT3G17700 | 52.324 | 753 | 333 | 11 | 5 | 744 | 6 | 745 | 0.0 | 739 |
MS.gene42485.t1 | AT3G17690 | 48.313 | 741 | 351 | 11 | 29 | 758 | 5 | 724 | 0.0 | 686 |
MS.gene42485.t1 | AT3G17700 | 53.028 | 677 | 292 | 11 | 5 | 668 | 6 | 669 | 0.0 | 666 |
MS.gene42485.t1 | AT3G17690 | 48.686 | 647 | 302 | 10 | 29 | 664 | 5 | 632 | 0.0 | 604 |
MS.gene42485.t1 | AT3G17690 | 46.503 | 529 | 255 | 9 | 29 | 546 | 5 | 516 | 5.42e-154 | 458 |
MS.gene42485.t1 | AT4G30360 | 36.364 | 583 | 338 | 14 | 192 | 755 | 71 | 639 | 2.69e-121 | 380 |
MS.gene42485.t1 | AT1G19780 | 38.515 | 579 | 324 | 14 | 191 | 750 | 96 | 661 | 3.38e-118 | 374 |
MS.gene42485.t1 | AT1G01340 | 37.133 | 579 | 324 | 15 | 192 | 750 | 63 | 621 | 2.53e-117 | 370 |
MS.gene42485.t1 | AT1G01340 | 37.133 | 579 | 324 | 15 | 192 | 750 | 68 | 626 | 3.35e-117 | 370 |
MS.gene42485.t1 | AT2G24610 | 37.889 | 578 | 327 | 14 | 191 | 750 | 71 | 634 | 6.22e-116 | 367 |
MS.gene42485.t1 | AT1G15990 | 38.276 | 580 | 325 | 13 | 191 | 750 | 89 | 655 | 7.71e-116 | 367 |
MS.gene42485.t1 | AT2G24610 | 37.889 | 578 | 327 | 14 | 191 | 750 | 86 | 649 | 2.69e-115 | 365 |
MS.gene42485.t1 | AT4G01010 | 36.364 | 583 | 324 | 14 | 192 | 750 | 68 | 627 | 4.36e-114 | 361 |
MS.gene42485.t1 | AT4G01010 | 36.364 | 583 | 324 | 14 | 192 | 750 | 68 | 627 | 4.36e-114 | 361 |
MS.gene42485.t1 | AT5G53130 | 33.906 | 640 | 375 | 16 | 121 | 744 | 26 | 633 | 4.82e-114 | 361 |
MS.gene42485.t1 | AT2G28260 | 36.300 | 573 | 337 | 11 | 191 | 750 | 27 | 584 | 4.36e-113 | 357 |
MS.gene42485.t1 | AT2G28260 | 36.300 | 573 | 337 | 11 | 191 | 750 | 67 | 624 | 1.22e-112 | 357 |
MS.gene42485.t1 | AT4G30560 | 37.158 | 584 | 332 | 11 | 191 | 753 | 76 | 645 | 8.27e-111 | 353 |
MS.gene42485.t1 | AT4G30560 | 37.158 | 584 | 332 | 11 | 191 | 753 | 76 | 645 | 8.27e-111 | 353 |
MS.gene42485.t1 | AT4G30560 | 37.158 | 584 | 332 | 11 | 191 | 753 | 76 | 645 | 8.27e-111 | 353 |
MS.gene42485.t1 | AT4G30560 | 37.285 | 582 | 330 | 11 | 191 | 751 | 102 | 669 | 1.34e-110 | 353 |
MS.gene42485.t1 | AT4G30560 | 37.285 | 582 | 330 | 11 | 191 | 751 | 102 | 669 | 1.34e-110 | 353 |
MS.gene42485.t1 | AT2G23980 | 36.960 | 579 | 333 | 10 | 191 | 750 | 75 | 640 | 2.62e-110 | 352 |
MS.gene42485.t1 | AT2G23980 | 36.960 | 579 | 333 | 10 | 191 | 750 | 102 | 667 | 4.55e-110 | 352 |
MS.gene42485.t1 | AT2G23980 | 36.960 | 579 | 333 | 10 | 191 | 750 | 102 | 667 | 4.55e-110 | 352 |
MS.gene42485.t1 | AT2G23980 | 36.960 | 579 | 333 | 10 | 191 | 750 | 102 | 667 | 4.55e-110 | 352 |
MS.gene42485.t1 | AT2G23980 | 36.960 | 579 | 333 | 10 | 191 | 750 | 102 | 667 | 4.55e-110 | 352 |
MS.gene42485.t1 | AT2G23980 | 36.960 | 579 | 333 | 10 | 191 | 750 | 102 | 667 | 4.55e-110 | 352 |
MS.gene42485.t1 | AT5G57940 | 36.489 | 581 | 332 | 12 | 191 | 750 | 80 | 644 | 2.28e-109 | 349 |
MS.gene42485.t1 | AT5G57940 | 36.489 | 581 | 332 | 12 | 191 | 750 | 87 | 651 | 2.53e-109 | 349 |
MS.gene42485.t1 | AT5G57940 | 36.489 | 581 | 332 | 12 | 191 | 750 | 87 | 651 | 2.53e-109 | 349 |
MS.gene42485.t1 | AT5G14870 | 35.884 | 588 | 341 | 14 | 182 | 750 | 32 | 602 | 8.76e-108 | 345 |
MS.gene42485.t1 | AT2G23980 | 35.714 | 602 | 332 | 11 | 191 | 750 | 102 | 690 | 5.37e-105 | 339 |
MS.gene42485.t1 | AT2G23980 | 35.714 | 602 | 332 | 11 | 191 | 750 | 102 | 690 | 5.37e-105 | 339 |
MS.gene42485.t1 | AT2G23980 | 35.714 | 602 | 332 | 11 | 191 | 750 | 102 | 690 | 5.37e-105 | 339 |
MS.gene42485.t1 | AT2G23980 | 35.714 | 602 | 332 | 11 | 191 | 750 | 102 | 690 | 5.37e-105 | 339 |
MS.gene42485.t1 | AT2G46430 | 34.261 | 575 | 346 | 13 | 191 | 750 | 71 | 628 | 4.76e-99 | 322 |
MS.gene42485.t1 | AT2G46430 | 34.261 | 575 | 346 | 13 | 191 | 750 | 71 | 628 | 4.76e-99 | 322 |
MS.gene42485.t1 | AT3G48010 | 34.300 | 586 | 341 | 15 | 191 | 750 | 43 | 610 | 8.89e-99 | 321 |
MS.gene42485.t1 | AT5G15410 | 31.466 | 607 | 360 | 15 | 172 | 744 | 93 | 677 | 4.92e-80 | 271 |
MS.gene42485.t1 | AT5G54250 | 28.840 | 586 | 378 | 14 | 191 | 751 | 78 | 649 | 7.43e-80 | 270 |
MS.gene42485.t1 | AT5G54250 | 28.840 | 586 | 378 | 14 | 191 | 751 | 78 | 649 | 7.43e-80 | 270 |
MS.gene42485.t1 | AT5G54250 | 28.840 | 586 | 378 | 14 | 191 | 751 | 78 | 649 | 7.43e-80 | 270 |
MS.gene42485.t1 | AT5G15410 | 31.466 | 607 | 360 | 15 | 172 | 744 | 92 | 676 | 8.82e-80 | 271 |
MS.gene42485.t1 | AT1G19780 | 37.387 | 444 | 249 | 12 | 323 | 750 | 20 | 450 | 1.04e-78 | 263 |
MS.gene42485.t1 | AT2G46450 | 30.931 | 569 | 356 | 12 | 198 | 750 | 35 | 582 | 8.48e-77 | 261 |
MS.gene42485.t1 | AT2G46450 | 30.931 | 569 | 356 | 12 | 198 | 750 | 35 | 582 | 8.48e-77 | 261 |
MS.gene42485.t1 | AT5G54250 | 27.986 | 586 | 378 | 14 | 191 | 751 | 78 | 644 | 6.41e-75 | 256 |
MS.gene42485.t1 | AT2G46440 | 31.162 | 568 | 360 | 12 | 198 | 750 | 35 | 586 | 1.01e-71 | 246 |
MS.gene42485.t1 | AT2G46450 | 30.404 | 569 | 336 | 13 | 198 | 750 | 35 | 559 | 3.25e-71 | 245 |
MS.gene42485.t1 | AT2G46450 | 30.404 | 569 | 336 | 13 | 198 | 750 | 22 | 546 | 3.71e-71 | 244 |
MS.gene42485.t1 | AT2G46440 | 33.007 | 409 | 243 | 11 | 358 | 753 | 18 | 408 | 3.11e-45 | 168 |
Find 161 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATTAAGAACAATACATTTC+TGG | 0.173543 | 6.1:+68020637 | None:intergenic |
CGAGTTCTTCAATGTCTTTA+AGG | 0.246275 | 6.1:+68014037 | None:intergenic |
TCAGGTTCATTTGACTGTTT+TGG | 0.251028 | 6.1:+68022029 | None:intergenic |
AACATCTGTATGCACTCTTT+TGG | 0.268080 | 6.1:-68016480 | MS.gene42485:CDS |
GCGTCCTAGGTACAAGATTC+TGG | 0.275125 | 6.1:+68021994 | None:intergenic |
AAGGGGTGTTTCTGAGAAAA+TGG | 0.279537 | 6.1:-68015014 | MS.gene42485:CDS |
GTTAGGTATGAGTCGCCTTA+TGG | 0.295834 | 6.1:-68012986 | MS.gene42485:intron |
GCATTTCTTTGACTCCTTAG+AGG | 0.307441 | 6.1:+68021894 | None:intergenic |
GTTTATCGTGCGTGGAAAAT+TGG | 0.310972 | 6.1:-68014575 | MS.gene42485:CDS |
CAGTTTCAGAATGTTGTCTA+TGG | 0.314251 | 6.1:-68021012 | MS.gene42485:CDS |
TTCGGGTCTGTTCAATCTTA+AGG | 0.314759 | 6.1:-68021604 | MS.gene42485:intron |
CTTCTCACCTTTATGTTCTC+TGG | 0.322896 | 6.1:-68017100 | MS.gene42485:CDS |
GATAATGATATTGATTTCCT+TGG | 0.338594 | 6.1:-68017275 | MS.gene42485:CDS |
CTTCTTGCTATCTGTGGATA+AGG | 0.358848 | 6.1:-68020839 | MS.gene42485:intron |
GGATTAGCATCTGACAGAAT+TGG | 0.359064 | 6.1:+68022050 | None:intergenic |
ATGTCTGTCTGGAGATCTTC+TGG | 0.361522 | 6.1:+68014977 | None:intergenic |
ATAATGATATTGATTTCCTT+GGG | 0.372389 | 6.1:-68017274 | MS.gene42485:CDS |
GAGTATAGGGTGGTCGGTGC+TGG | 0.376720 | 6.1:-68019919 | MS.gene42485:CDS |
GCAGTTTAGGTTGGCTTATG+TGG | 0.377303 | 6.1:-68019947 | MS.gene42485:intron |
ACGAAGCGATTTGAAAAGTT+CGG | 0.377936 | 6.1:-68021622 | MS.gene42485:CDS |
CTTATGTGGCCCCTGAGTAT+AGG | 0.382954 | 6.1:-68019933 | MS.gene42485:CDS |
TGTTTCTGAGAAAATGGTTA+TGG | 0.385327 | 6.1:-68015008 | MS.gene42485:CDS |
TACAATTTCCATCATGGCAT+TGG | 0.387665 | 6.1:-68016014 | MS.gene42485:CDS |
ATGTTCTCTGGCCATGTTGT+TGG | 0.392417 | 6.1:-68017088 | MS.gene42485:CDS |
TTCTATTCCCATGATTCCTA+TGG | 0.393130 | 6.1:-68021958 | MS.gene42485:CDS |
GTTTAAGCATCTTACTGATC+TGG | 0.395525 | 6.1:+68014083 | None:intergenic |
GACGTCTACCTATCCTTTCT+AGG | 0.396575 | 6.1:+68015243 | None:intergenic |
TTGGAGATTTGCCAATTAGC+TGG | 0.400678 | 6.1:+68017167 | None:intergenic |
ACCGAAAAGTTTCCTTTATG+TGG | 0.403108 | 6.1:-68021771 | MS.gene42485:CDS |
AAATTAGTATCCCTTTCATA+TGG | 0.407197 | 6.1:+68021933 | None:intergenic |
TTCTGCCCGAAAAGATTTCC+AGG | 0.409816 | 6.1:+68021831 | None:intergenic |
TGCCATCATTCTAATCTACT+TGG | 0.410973 | 6.1:-68016667 | MS.gene42485:CDS |
CGAAGCGATTTGAAAAGTTC+GGG | 0.412756 | 6.1:-68021621 | MS.gene42485:CDS |
GGTGTATGAGTAACATATAA+TGG | 0.422666 | 6.1:+68021852 | None:intergenic |
TGTTCATTCATGCCACATAA+AGG | 0.423457 | 6.1:+68021759 | None:intergenic |
TTATGTGGCCCCTGAGTATA+GGG | 0.424325 | 6.1:-68019932 | MS.gene42485:CDS |
ACAATTTCCATCATGGCATT+GGG | 0.425621 | 6.1:-68016013 | MS.gene42485:CDS |
TGTTGTGCTTCCACTTCCTC+AGG | 0.425809 | 6.1:-68019827 | MS.gene42485:intron |
TTAGGTATGAGTCGCCTTAT+GGG | 0.427764 | 6.1:-68012985 | MS.gene42485:intron |
CCTTCTCATCGGAAACATAC+AGG | 0.431859 | 6.1:-68015975 | MS.gene42485:CDS |
TCCCCTTCGATTAATGTAAC+CGG | 0.433571 | 6.1:+68014529 | None:intergenic |
GCTTGTTTGAATGCCACATC+TGG | 0.434526 | 6.1:-68016568 | MS.gene42485:CDS |
CCTCTTTACAATTTCCATCA+TGG | 0.437853 | 6.1:-68016020 | MS.gene42485:CDS |
ATATGGTTCCATAGGAATCA+TGG | 0.440784 | 6.1:+68021950 | None:intergenic |
AAATCTTCTTGCCCGATCCT+TGG | 0.443744 | 6.1:+68020984 | None:intergenic |
TTCTGGAATTTAGAACCATC+AGG | 0.446386 | 6.1:+68022011 | None:intergenic |
ATCGATACACTTTGCGTCCT+AGG | 0.448288 | 6.1:+68021981 | None:intergenic |
CTGGTACCTCTTTAGTCTAC+AGG | 0.449815 | 6.1:-68017059 | MS.gene42485:intron |
TTGGAGAGCGTCGGAGAAGA+TGG | 0.449885 | 6.1:-68014556 | MS.gene42485:CDS |
AGGGACACACAGGTCCTCTA+AGG | 0.453789 | 6.1:-68021908 | MS.gene42485:CDS |
GAGAAAGTTACCTGAGGAAG+TGG | 0.454640 | 6.1:+68019817 | None:intergenic |
GCTCTATGTGATTTCCCATA+AGG | 0.457382 | 6.1:+68012971 | None:intergenic |
TGCTTACCTGTAGACTAAAG+AGG | 0.461853 | 6.1:+68017053 | None:intergenic |
TGTTGTACAAGTTTATTATG+TGG | 0.462975 | 6.1:+68020922 | None:intergenic |
CACTTGTCCAACTTACTTCG+AGG | 0.466082 | 6.1:-68021652 | MS.gene42485:CDS |
GCCATGTTGTTGGTTCATGC+TGG | 0.471591 | 6.1:-68017078 | MS.gene42485:CDS |
TTTACTAAGGTCTGGTCAGT+TGG | 0.472261 | 6.1:-68021700 | MS.gene42485:CDS |
AAATGTAATGCTTCAAGGAT+GGG | 0.476534 | 6.1:-68014118 | MS.gene42485:CDS |
TTACTAAGGTCTGGTCAGTT+GGG | 0.478858 | 6.1:-68021699 | MS.gene42485:CDS |
CAGCAAATCATTACTCTGGC+TGG | 0.479743 | 6.1:-68016076 | MS.gene42485:CDS |
GGCAAGCTGAACGGTATAGT+TGG | 0.480512 | 6.1:-68015045 | MS.gene42485:CDS |
ATTCATATTTGCGTCGGGCG+AGG | 0.481772 | 6.1:-68017140 | MS.gene42485:CDS |
TATGACGTCGTATGTCTGTC+TGG | 0.482117 | 6.1:+68014966 | None:intergenic |
GTCTGTCATGCAGGAGAGTA+CGG | 0.482234 | 6.1:-68015066 | MS.gene42485:intron |
AATGAACATTTACTAAGGTC+TGG | 0.482643 | 6.1:-68021708 | MS.gene42485:CDS |
CGTCGGAGAAGATGGAATTC+CGG | 0.486033 | 6.1:-68014548 | MS.gene42485:CDS |
TGAAAGGGATACTAATTTCA+AGG | 0.489370 | 6.1:-68021928 | MS.gene42485:CDS |
AAAATGTAATGCTTCAAGGA+TGG | 0.489509 | 6.1:-68014119 | MS.gene42485:CDS |
ACTCAATTCATATTTGCGTC+GGG | 0.491512 | 6.1:-68017145 | MS.gene42485:CDS |
CTATGGAGATGCCAAGGATC+GGG | 0.492408 | 6.1:-68020995 | MS.gene42485:CDS |
TGAGTAGCCTCGAAGTAAGT+TGG | 0.493356 | 6.1:+68021645 | None:intergenic |
GCTTACCAGAAGAGCTCAAA+AGG | 0.496306 | 6.1:-68015190 | MS.gene42485:intron |
TCCTATGGAACCATATGAAA+GGG | 0.499109 | 6.1:-68021943 | MS.gene42485:CDS |
GACGTCATGATGTTGAGAAA+TGG | 0.500216 | 6.1:-68015226 | MS.gene42485:CDS |
ATCCAAGTAGATTAGAATGA+TGG | 0.505063 | 6.1:+68016665 | None:intergenic |
AACTCAATTCATATTTGCGT+CGG | 0.510524 | 6.1:-68017146 | MS.gene42485:CDS |
TTATGTGGATTTATAACTCT+AGG | 0.514938 | 6.1:+68020937 | None:intergenic |
TGGAGATTTGCCAATTAGCT+GGG | 0.515770 | 6.1:+68017168 | None:intergenic |
TATAGTAAGTGGTATGGCAT+TGG | 0.518434 | 6.1:+68016522 | None:intergenic |
GTCGCTCAAGGATGGCATCT+AGG | 0.519921 | 6.1:+68014665 | None:intergenic |
GCACCGACCACCCTATACTC+AGG | 0.521545 | 6.1:+68019922 | None:intergenic |
GGTATAGTTGGGCAGTAACA+AGG | 0.522016 | 6.1:-68015033 | MS.gene42485:CDS |
TGGGGAATATAACCACACTA+TGG | 0.522817 | 6.1:-68016612 | MS.gene42485:CDS |
CACCGACCACCCTATACTCA+GGG | 0.524935 | 6.1:+68019923 | None:intergenic |
GACGCAAATATGAATTGAGT+TGG | 0.527384 | 6.1:+68017148 | None:intergenic |
CTCACAGTCAAGGAGTCATA+AGG | 0.529721 | 6.1:-68013984 | MS.gene42485:intron |
TAATTCTTTGCAGTTTAGGT+TGG | 0.531151 | 6.1:-68019956 | MS.gene42485:intron |
TCCCTTTCATATGGTTCCAT+AGG | 0.532967 | 6.1:+68021942 | None:intergenic |
ACATTGGTTTCTATAGTAAG+TGG | 0.533736 | 6.1:+68016511 | None:intergenic |
TTCTAATCTACTTGGATGCA+TGG | 0.533953 | 6.1:-68016659 | MS.gene42485:CDS |
TATGAGTCCCAATGCCATGA+TGG | 0.541159 | 6.1:+68016006 | None:intergenic |
GCAAGCTGAACGGTATAGTT+GGG | 0.541167 | 6.1:-68015044 | MS.gene42485:CDS |
AATGTAATGCTTCAAGGATG+GGG | 0.547293 | 6.1:-68014117 | MS.gene42485:CDS |
AATTCCAGAATCTTGTACCT+AGG | 0.548541 | 6.1:-68021998 | MS.gene42485:CDS |
ATGTATTAGTCGCTCAAGGA+TGG | 0.549082 | 6.1:+68014657 | None:intergenic |
GCCCCTGAGTATAGGGTGGT+CGG | 0.549673 | 6.1:-68019925 | MS.gene42485:CDS |
CCTGTATGTTTCCGATGAGA+AGG | 0.551252 | 6.1:+68015975 | None:intergenic |
CTGCTTATAGGAGCCTAGAA+AGG | 0.551604 | 6.1:-68015256 | MS.gene42485:intron |
GGTTTCTATAGTAAGTGGTA+TGG | 0.553817 | 6.1:+68016516 | None:intergenic |
ATAATAAACTTGTACAACAA+TGG | 0.557948 | 6.1:-68020918 | MS.gene42485:CDS |
AATACAGCAAATCATTACTC+TGG | 0.558894 | 6.1:-68016080 | MS.gene42485:intron |
ACTTCCCACACAAAATAGCT+TGG | 0.560883 | 6.1:+68016043 | None:intergenic |
TATGGTTCCATAGGAATCAT+GGG | 0.561155 | 6.1:+68021951 | None:intergenic |
GTTGGACAAGTGGTACAGTA+AGG | 0.563251 | 6.1:+68021663 | None:intergenic |
CCAACAAAATTCAGATTGCA+TGG | 0.563525 | 6.1:-68012949 | MS.gene42485:CDS |
GGCGAGGCAAATTTAACTAT+AGG | 0.565893 | 6.1:-68017124 | MS.gene42485:CDS |
TCAAGGATGGCATCTAGGAT+AGG | 0.567759 | 6.1:+68014670 | None:intergenic |
TTCCTATGGAACCATATGAA+AGG | 0.569799 | 6.1:-68021944 | MS.gene42485:CDS |
TCTATGGAGATGCCAAGGAT+CGG | 0.571624 | 6.1:-68020996 | MS.gene42485:CDS |
GGCAAGCATCTCGCAAACAT+TGG | 0.571845 | 6.1:+68016686 | None:intergenic |
GAACGATCTTCTAAAAGCAA+AGG | 0.576672 | 6.1:-68014472 | MS.gene42485:intron |
TTCCGGTTACATTAATCGAA+GGG | 0.577441 | 6.1:-68014531 | MS.gene42485:CDS |
CGCGGCAACGAGCAAAGCAG+TGG | 0.578115 | 6.1:-68021802 | MS.gene42485:CDS |
ATTCCGGTTACATTAATCGA+AGG | 0.583352 | 6.1:-68014532 | MS.gene42485:CDS |
TATAGGAGCCTAGAAAGGAT+AGG | 0.584916 | 6.1:-68015251 | MS.gene42485:intron |
CAGATGTTTGTTGAACACAT+TGG | 0.588636 | 6.1:+68016495 | None:intergenic |
CTTCTCATCGGAAACATACA+GGG | 0.589084 | 6.1:-68015974 | MS.gene42485:CDS |
CTGTATGTTTCCGATGAGAA+GGG | 0.589788 | 6.1:+68015976 | None:intergenic |
ACTAATTTCAAGGGACACAC+AGG | 0.589893 | 6.1:-68021918 | MS.gene42485:CDS |
GAAAGGGATACTAATTTCAA+GGG | 0.590743 | 6.1:-68021927 | MS.gene42485:CDS |
AATGTTTGATAATCATTGTG+CGG | 0.591415 | 6.1:+68012892 | None:intergenic |
CCATGATGGAAATTGTAAAG+AGG | 0.592725 | 6.1:+68016020 | None:intergenic |
TTATATGTTACTCATACACC+TGG | 0.597765 | 6.1:-68021849 | MS.gene42485:CDS |
TTGCGGAGCCCTCACAGTCA+AGG | 0.597907 | 6.1:-68013994 | MS.gene42485:CDS |
AAGGTGGTGTTTATCGTGCG+TGG | 0.600695 | 6.1:-68014583 | MS.gene42485:CDS |
AACATGGCCAGAGAACATAA+AGG | 0.602162 | 6.1:+68017093 | None:intergenic |
TTTATAACTCTAGGTACATG+TGG | 0.602488 | 6.1:+68020946 | None:intergenic |
TCCGGTTACATTAATCGAAG+GGG | 0.602955 | 6.1:-68014530 | MS.gene42485:CDS |
GGTTTGCAGAATAACAATGC+TGG | 0.606356 | 6.1:-68021735 | MS.gene42485:CDS |
GCTCTTCTGGTAAGCGACGA+TGG | 0.606460 | 6.1:+68015198 | None:intergenic |
GTATAGTTGGGCAGTAACAA+GGG | 0.606984 | 6.1:-68015032 | MS.gene42485:CDS |
CTTATCTTCACTCCATAGTG+TGG | 0.607134 | 6.1:+68016600 | None:intergenic |
TTTCGGGCAGAATATGGTCG+CGG | 0.609991 | 6.1:-68021820 | MS.gene42485:CDS |
TCGTATGTATTAGTCGCTCA+AGG | 0.611156 | 6.1:+68014653 | None:intergenic |
TTATGACTCCTTGACTGTGA+GGG | 0.612462 | 6.1:+68013986 | None:intergenic |
AAACAGTCAAATGAACCTGA+TGG | 0.615207 | 6.1:-68022026 | MS.gene42485:CDS |
TGTTGTCTATGGAGATGCCA+AGG | 0.615837 | 6.1:-68021001 | MS.gene42485:CDS |
CTCGAAGTAAGTTGGACAAG+TGG | 0.616356 | 6.1:+68021653 | None:intergenic |
TCAAGGTTGTCTCATACAGA+AGG | 0.617051 | 6.1:-68014602 | MS.gene42485:CDS |
CGTGGAAAATTGGAGAGCGT+CGG | 0.618147 | 6.1:-68014565 | MS.gene42485:CDS |
CTTATGACTCCTTGACTGTG+AGG | 0.620566 | 6.1:+68013985 | None:intergenic |
GTTCTTCAATGTCTTTAAGG+CGG | 0.621653 | 6.1:+68014040 | None:intergenic |
GGAGAGTACGGCAAGCTGAA+CGG | 0.622032 | 6.1:-68015054 | MS.gene42485:CDS |
TGAAATCATTCACACTTCTG+AGG | 0.626852 | 6.1:+68020589 | None:intergenic |
TAATGATATTGATTTCCTTG+GGG | 0.626931 | 6.1:-68017273 | MS.gene42485:CDS |
AGTAAGATGCTTAAACAATG+TGG | 0.628866 | 6.1:-68014076 | MS.gene42485:CDS |
CGATGCACAACAAAGGAAGT+CGG | 0.630525 | 6.1:-68014633 | MS.gene42485:CDS |
ATGTGCTGCTGAAGACCCCA+AGG | 0.634206 | 6.1:+68017258 | None:intergenic |
AATGCTTCATTTAATCCGAG+TGG | 0.640738 | 6.1:-68021876 | MS.gene42485:CDS |
TTAATCGAAGGGGATGCTTG+TGG | 0.642616 | 6.1:-68014520 | MS.gene42485:CDS |
AGGTTGTCTCATACAGAAGG+TGG | 0.644779 | 6.1:-68014599 | MS.gene42485:CDS |
ACCAGCATGAACCAACAACA+TGG | 0.650102 | 6.1:+68017077 | None:intergenic |
ATACATACGATGCACAACAA+AGG | 0.659521 | 6.1:-68014640 | MS.gene42485:CDS |
TTATGTGGCATGAATGAACA+TGG | 0.660239 | 6.1:-68021756 | MS.gene42485:CDS |
TATTGTACAAAGATCACTAG+AGG | 0.662556 | 6.1:+68017217 | None:intergenic |
AAGATGCTTAAACAATGTGG+AGG | 0.664920 | 6.1:-68014073 | MS.gene42485:CDS |
GTAACATATAATGGACCACT+CGG | 0.667159 | 6.1:+68021861 | None:intergenic |
TATAGTTGGGCAGTAACAAG+GGG | 0.668647 | 6.1:-68015031 | MS.gene42485:CDS |
TGTGGCCCCTGAGTATAGGG+TGG | 0.690527 | 6.1:-68019929 | MS.gene42485:CDS |
GGCTGAGTTTGATAATGATG+AGG | 0.702163 | 6.1:-68022075 | MS.gene42485:CDS |
ACCGACCACCCTATACTCAG+GGG | 0.727086 | 6.1:+68019924 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 68012904 | 68022099 | 68012904 | ID=MS.gene42485 |
chr6.1 | mRNA | 68012904 | 68022099 | 68012904 | ID=MS.gene42485.t1;Parent=MS.gene42485 |
chr6.1 | exon | 68021605 | 68022099 | 68021605 | ID=MS.gene42485.t1.exon1;Parent=MS.gene42485.t1 |
chr6.1 | CDS | 68021605 | 68022099 | 68021605 | ID=cds.MS.gene42485.t1;Parent=MS.gene42485.t1 |
chr6.1 | exon | 68020840 | 68021031 | 68020840 | ID=MS.gene42485.t1.exon2;Parent=MS.gene42485.t1 |
chr6.1 | CDS | 68020840 | 68021031 | 68020840 | ID=cds.MS.gene42485.t1;Parent=MS.gene42485.t1 |
chr6.1 | exon | 68020563 | 68020661 | 68020563 | ID=MS.gene42485.t1.exon3;Parent=MS.gene42485.t1 |
chr6.1 | CDS | 68020563 | 68020661 | 68020563 | ID=cds.MS.gene42485.t1;Parent=MS.gene42485.t1 |
chr6.1 | exon | 68019828 | 68019965 | 68019828 | ID=MS.gene42485.t1.exon4;Parent=MS.gene42485.t1 |
chr6.1 | CDS | 68019828 | 68019965 | 68019828 | ID=cds.MS.gene42485.t1;Parent=MS.gene42485.t1 |
chr6.1 | exon | 68017060 | 68017296 | 68017060 | ID=MS.gene42485.t1.exon5;Parent=MS.gene42485.t1 |
chr6.1 | CDS | 68017060 | 68017296 | 68017060 | ID=cds.MS.gene42485.t1;Parent=MS.gene42485.t1 |
chr6.1 | exon | 68016471 | 68016716 | 68016471 | ID=MS.gene42485.t1.exon6;Parent=MS.gene42485.t1 |
chr6.1 | CDS | 68016471 | 68016716 | 68016471 | ID=cds.MS.gene42485.t1;Parent=MS.gene42485.t1 |
chr6.1 | exon | 68015950 | 68016095 | 68015950 | ID=MS.gene42485.t1.exon7;Parent=MS.gene42485.t1 |
chr6.1 | CDS | 68015950 | 68016095 | 68015950 | ID=cds.MS.gene42485.t1;Parent=MS.gene42485.t1 |
chr6.1 | exon | 68015191 | 68015268 | 68015191 | ID=MS.gene42485.t1.exon8;Parent=MS.gene42485.t1 |
chr6.1 | CDS | 68015191 | 68015268 | 68015191 | ID=cds.MS.gene42485.t1;Parent=MS.gene42485.t1 |
chr6.1 | exon | 68014946 | 68015075 | 68014946 | ID=MS.gene42485.t1.exon9;Parent=MS.gene42485.t1 |
chr6.1 | CDS | 68014946 | 68015075 | 68014946 | ID=cds.MS.gene42485.t1;Parent=MS.gene42485.t1 |
chr6.1 | exon | 68014473 | 68014725 | 68014473 | ID=MS.gene42485.t1.exon10;Parent=MS.gene42485.t1 |
chr6.1 | CDS | 68014473 | 68014725 | 68014473 | ID=cds.MS.gene42485.t1;Parent=MS.gene42485.t1 |
chr6.1 | exon | 68013985 | 68014147 | 68013985 | ID=MS.gene42485.t1.exon11;Parent=MS.gene42485.t1 |
chr6.1 | CDS | 68013985 | 68014147 | 68013985 | ID=cds.MS.gene42485.t1;Parent=MS.gene42485.t1 |
chr6.1 | exon | 68012904 | 68013003 | 68012904 | ID=MS.gene42485.t1.exon12;Parent=MS.gene42485.t1 |
chr6.1 | CDS | 68012904 | 68013003 | 68012904 | ID=cds.MS.gene42485.t1;Parent=MS.gene42485.t1 |
Gene Sequence |
Protein sequence |