AlfalfaGEDB | MS.gene006012

M. sativa cultivar XinJiangDaYe / MS.gene006012

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF12854.10 PF12921.10 PF13041.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006012.t1	XP_003591979.2	94.6	203	11	0	38	240	36	238	2.50E-103	386.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006012.t1	Q9ZVX5	43.8	203	109	3	42	239	28	230	1.7e-36	156.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006012.t1	G7I9N3	94.6	203	11	0	38	240	36	238	1.8e-103	386.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene006012	MS.gene42485	PPI
MS.gene006012	MS.gene038510	PPI
MS.gene006012	MS.gene27389	PPI
MS.gene006012	MS.gene046411	PPI
MS.gene006012	MS.gene009064	PPI
MS.gene006012	MS.gene61060	PPI
MS.gene006012	MS.gene041684	PPI
MS.gene006012	MS.gene041688	PPI
MS.gene006012	MS.gene069674	PPI
MS.gene006012	MS.gene065923	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006012.t1	MTR_1g095880	95.201	771	35	1	1	771	1	769	0.0	1469
MS.gene006012.t1	MTR_7g099380	82.126	207	35	1	274	478	1	207	4.56e-120	359
MS.gene006012.t1	MTR_7g099380	35.294	204	130	1	414	615	1	204	3.74e-34	130
MS.gene006012.t1	MTR_7g099380	34.314	204	132	1	208	409	5	208	9.07e-31	120
MS.gene006012.t1	MTR_7g099380	31.535	241	128	2	309	547	1	206	3.50e-29	115
MS.gene006012.t1	MTR_7g099380	33.971	209	134	3	379	584	1	208	9.53e-28	112
MS.gene006012.t1	MTR_7g099380	31.553	206	137	3	485	687	2	206	2.22e-25	105
MS.gene006012.t1	MTR_7g099380	31.579	209	139	3	449	654	1	208	1.58e-22	96.7
MS.gene006012.t1	MTR_7g099380	29.897	194	127	1	558	751	5	189	3.47e-22	95.9
MS.gene006012.t1	MTR_7g099380	29.032	217	141	2	519	733	1	206	2.15e-19	87.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006012.t1	AT2G16880	49.178	730	351	7	22	732	8	736	0.0	690
MS.gene006012.t1	AT5G64320	33.588	524	340	3	156	678	198	714	1.32e-97	319
MS.gene006012.t1	AT5G64320	28.358	603	373	8	173	769	180	729	1.40e-81	276
MS.gene006012.t1	AT5G64320	28.076	577	342	8	250	761	113	681	3.49e-68	239
MS.gene006012.t1	AT5G64320	27.096	513	307	3	242	687	176	688	2.18e-65	231
MS.gene006012.t1	AT1G62670	31.947	529	357	1	162	690	68	593	1.36e-97	316
MS.gene006012.t1	AT1G62670	30.354	537	363	2	225	761	58	583	2.00e-85	284
MS.gene006012.t1	AT1G62670	31.200	500	342	2	200	698	68	566	1.72e-83	278
MS.gene006012.t1	AT1G62670	31.073	531	325	4	158	687	134	624	1.63e-79	268
MS.gene006012.t1	AT1G62670	27.729	458	307	1	331	764	59	516	1.42e-61	219

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Find 199 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTGATAACCAAGCTCA+TGG	0.564116	1.3:+66697660	None:intergenic
AACACCGTCGCCGGCGGCAG+TGG	0.444023	1.3:-66698112	MS.gene006012:CDS
AACACTAACACCGTCGCCGG+CGG	0.600441	1.3:-66698118	MS.gene006012:CDS
AACGTATGGAACTCTAATCA+TGG	0.490968	1.3:-66696643	MS.gene006012:CDS
AACTGAGGAAGCAGAGAAAC+TGG	0.421006	1.3:-66696076	MS.gene006012:CDS
AAGTCAGTTGAGTCAAGTTA+GGG	0.461243	1.3:-66697342	MS.gene006012:CDS
AAGTGTCAAGTAAGGGTTTA+GGG	0.381520	1.3:+66697711	None:intergenic
AATAAGTAGTTTGTGTACTC+AGG	0.458882	1.3:-66695965	MS.gene006012:CDS
AATGAAGAGGTTTGTATGAA+AGG	0.445073	1.3:+66697948	None:intergenic
AATGAAGGCGAGGGGAGTTA+AGG	0.324082	1.3:-66696991	MS.gene006012:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGAAGAGGTTTGTATGAA+AGG	+	chr1.3:66696010-66696029	None:intergenic	30.0%
AATTATTCATGGCTATTGCT+GGG	-	chr1.3:66697534-66697553	MS.gene006012:CDS	30.0%
ACATGTAATATTCTTCTTCG+AGG	-	chr1.3:66697628-66697647	MS.gene006012:CDS	30.0%
ACGTATATCAAGTTAATGGA+TGG	-	chr1.3:66698081-66698100	MS.gene006012:CDS	30.0%
ACTTATAATACTATGGTGAG+GGG	-	chr1.3:66696788-66696807	MS.gene006012:CDS	30.0%
ATGAATTGTTGAAGATTCTG+TGG	+	chr1.3:66695954-66695973	None:intergenic	30.0%
ATGTTACTAGTAGATTCATC+GGG	+	chr1.3:66697514-66697533	None:intergenic	30.0%
ATTAATCAAATGGGGGAATA+TGG	-	chr1.3:66696536-66696555	MS.gene006012:CDS	30.0%
ATTCCAGTTCCATAACAAAA+TGG	-	chr1.3:66697576-66697595	MS.gene006012:CDS	30.0%
CAATAGCATTATAGGTATAC+CGG	+	chr1.3:66697834-66697853	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	66695831	66698146	66695831	ID=MS.gene006012
chr1.3	mRNA	66695831	66698146	66695831	ID=MS.gene006012.t1;Parent=MS.gene006012
chr1.3	exon	66695831	66698146	66695831	ID=MS.gene006012.t1.exon1;Parent=MS.gene006012.t1
chr1.3	CDS	66695831	66698146	66695831	ID=cds.MS.gene006012.t1;Parent=MS.gene006012.t1

Gene Sequence

>MS.gene006012

ATGATGAACACTAACACCGTCGCCGGCGGCAGTGGTGGTGGTGGCGGAGACGGCAGAGGAAAAGAACAACAACTGATACAAACAATAACCACAATACTAACCAAAACTAAAAACGAAAACCCACAGAATCTTCAACAATTCATCCCACACTTAACACTTCCAATCATAATCTCAATCCTTTCATACAAACCTCTTCATTCTCAACCAAAAACCCTACTTTCCTTCTTCAAATGGTTCCAATCCAACGCACATTCCTCTCTCATTCATTCCCCTAAACCCCTTCTCACTCTCCTCCCTCCTCTCCTCTCTCGTCGCAAATTCTCCGACGTTAAATCCCTTCTCCTCAATTTCATCTCCTCTGATCACCCTCATCATTCTCTTCATGCTCACCTCCTTCGTGCCGATCACTCCGTCCCTAAACCCTTACTTGACACTTCCCTTGCTGCTTATGTCATCTCTAAACACCATGAGCTTGGTTATCAGATTTTTAACAAAATGAAACGCCTTCGTTTTCGACCGAATTTGCTTACTTGTAATACTCTTCTTAATGCTCTTGTCAGGTCTAATTCCTCTCATTCTTTGGTTTTGTCAAGAGAGGTTTTTCAAGATGCTGTTAAGCTTGGTGTTCAACCTAATGTTAATACTTTTAATATTTTGATTCATGGTTATTGTTCTGATAATAATGTCGAAGAAGCGCTTCGGTTGATTAATCAAATGGGGGAATATGGTTGTTGTCCTGATAATGTTACTTATAATACTGTTTTAACTGCTTTGTGTAAGAGAAGTCAGTTGAGTCAAGTTAGGGATTTGTTGCTTCAAATGAAGAATAGTGGTCTTGTTCCTAATAGGAATACTTATAATATTTTGGTTCATGGGTATTGTAAGCTGAAATGGTTGAAAGAAGCTGCTGAGGTTATTGAGTTGATGACTAGGAGTGGTATGTTGCCGGATGTTTGGACTTATAATACTATGGTGAGGGGTTTTTGTGATGAGGGTAAGATTGATGAGGCGGTTAGGTTTAGAGATGAGATGGAGAGATTGAAACTGGTTCCGGATGTTGTTACTTATAATACTTTGATAGATGGGTGTTTTGAGCATCGGGGTAGTGATGCGGCGTTTAAGTTGATGGAGGAAATGAAGGCGAGGGGAGTTAAGGAGAATGGTGTGACACATAATATAATGGTTAAGTGGTTCTGTAAGGAAGGTAAGATTGATGAGGCGAGCAATGTAATGGTGAAGATGGTGGAAAGTGGGTTTTCTCCGGATTGTTTTACTTATAACACGATGATTAATGGTTATTGTAAAGCTGGAAAGATGGCAGAGGCTTATAAGATGATGGATGAAATGGGAAGGAAAGGATTGAAACCAGATACTTTTACTCTTAACACCTTACTGCACATTATGTGCTTGGAGAAGAAGCTAGACGATGCTTACGCCTTGACTGTGAAGGCTAGGAAGCGAGGTTATATTCTTGATGAGGTAACGTATGGAACTCTAATCATGGGGTATTTCAAGCATGAACAAGCAGATAGGGCGTTGAAGCTTTGGGAGGAGATGAAGGAGAAGGGAATTGTTGCCACTATTATCACTTATAACACTATAATCAGGGGGTTGTGTCTGTCTGGGAAAACTGATCAAGCTGTAGACAAATTAAACGAGCTTTTAGAGAAGGGTTTGGTCCCCGATGAATCTACTAGTAACATAATTATTCATGGCTATTGCTGGGAGGGAGCGGTAGAGAAAGCATTCCAGTTCCATAACAAAATGGTAGAGCACTCCTTGAAACCAGATATTTTCACATGTAATATTCTTCTTCGAGGTCTTTGCAGAGAGGGAATGCTGGAGAAAGGTCTAACACTATTTAACACATGGATCTCTAAAGGGAAGCCCATGGACACAGTTACCTACAACATAATAATATCCTCTTTTTGCAAAGAAGGAAAACTTGAGGATGCTTTTGACCTTATGACTGAAATGGAGGGGAAAAATTTGGAGCCTGACCGGTATACCTATAATGCTATTGTGACTGGGCTTACCAAAGCTGGTAGAACTGAGGAAGCAGAGAAACTGGCGTTGAAATTTGCAGAGAAAGGGCAACAGGTGAAAACTCAAGACATCTCTCCGGAGCTTGGTACAAGTGATATGATGTACTCAGAGCAAATAAGTAGTTTGTGTACTCAGGGAAAGTACAAGGATGCAATGAAATTGTTTCAACAGGCAGAGCAGAAAGGAGTTAGTTTAAATAAATATACGTATATCAAGTTAATGGATGGACTTTTGAAGAGGCGGAAAAGCATATCAAAGGCTGTTAGATAA

Protein sequence

>MS.gene006012.t1

MMNTNTVAGGSGGGGGDGRGKEQQLIQTITTILTKTKNENPQNLQQFIPHLTLPIIISILSYKPLHSQPKTLLSFFKWFQSNAHSSLIHSPKPLLTLLPPLLSRRKFSDVKSLLLNFISSDHPHHSLHAHLLRADHSVPKPLLDTSLAAYVISKHHELGYQIFNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVLSREVFQDAVKLGVQPNVNTFNILIHGYCSDNNVEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLSQVRDLLLQMKNSGLVPNRNTYNILVHGYCKLKWLKEAAEVIELMTRSGMLPDVWTYNTMVRGFCDEGKIDEAVRFRDEMERLKLVPDVVTYNTLIDGCFEHRGSDAAFKLMEEMKARGVKENGVTHNIMVKWFCKEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKPDTFTLNTLLHIMCLEKKLDDAYALTVKARKRGYILDEVTYGTLIMGYFKHEQADRALKLWEEMKEKGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMDTVTYNIIISSFCKEGKLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLALKFAEKGQQVKTQDISPELGTSDMMYSEQISSLCTQGKYKDAMKLFQQAEQKGVSLNKYTYIKLMDGLLKRRKSISKAVR