Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42611.t1 | XP_003603296.2 | 95.3 | 274 | 13 | 0 | 2 | 275 | 1 | 274 | 6.70E-144 | 520 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42611.t1 | Q9S7H4 | 57.6 | 257 | 104 | 2 | 24 | 275 | 9 | 265 | 2.5e-75 | 283.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42611.t1 | G7J9U7 | 95.3 | 274 | 13 | 0 | 2 | 275 | 1 | 274 | 4.8e-144 | 520.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058208 | MS.gene42611 | 0.805347 | 1.39E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42611.t1 | MTR_3g106000 | 95.255 | 274 | 13 | 0 | 2 | 275 | 1 | 274 | 0.0 | 544 |
| MS.gene42611.t1 | MTR_1g013820 | 61.511 | 278 | 100 | 4 | 1 | 275 | 1 | 274 | 5.77e-124 | 354 |
| MS.gene42611.t1 | MTR_1g013820 | 65.737 | 251 | 83 | 2 | 28 | 275 | 4 | 254 | 6.09e-123 | 351 |
| MS.gene42611.t1 | MTR_1g013820 | 65.339 | 251 | 82 | 3 | 28 | 275 | 4 | 252 | 2.05e-120 | 345 |
| MS.gene42611.t1 | MTR_6g013425 | 47.638 | 254 | 128 | 3 | 26 | 275 | 64 | 316 | 6.35e-78 | 239 |
| MS.gene42611.t1 | MTR_5g043210 | 49.393 | 247 | 120 | 4 | 33 | 275 | 18 | 263 | 2.48e-76 | 233 |
| MS.gene42611.t1 | MTR_5g043210 | 49.393 | 247 | 120 | 4 | 33 | 275 | 73 | 318 | 3.65e-75 | 232 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42611.t1 | AT5G10870 | 57.588 | 257 | 104 | 2 | 24 | 275 | 9 | 265 | 9.79e-100 | 293 |
| MS.gene42611.t1 | AT1G69370 | 48.810 | 252 | 124 | 3 | 29 | 275 | 65 | 316 | 5.54e-79 | 241 |
| MS.gene42611.t1 | AT3G29200 | 45.290 | 276 | 139 | 3 | 11 | 275 | 66 | 340 | 3.27e-77 | 238 |
Find 49 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGAAGCAGCTTCAATTTA+TGG | 0.102058 | 3.1:-84061452 | MS.gene42611:CDS |
| TATACCTTGGCACGAATTAA+AGG | 0.253511 | 3.1:+84058398 | None:intergenic |
| GGTGGTAAAATTCCTTTATA+AGG | 0.277992 | 3.1:+84059643 | None:intergenic |
| AAGATGCCCTCACTGATTCT+AGG | 0.300800 | 3.1:+84061356 | None:intergenic |
| AGCAACTACCTTGGCTTGAA+TGG | 0.341924 | 3.1:+84061189 | None:intergenic |
| ATCTCTAGAAGGATTCATTA+TGG | 0.362754 | 3.1:-84058470 | MS.gene42611:CDS |
| CCTGAAGAAAATCCTTATAA+AGG | 0.368752 | 3.1:-84059655 | MS.gene42611:CDS |
| GAAAAGAAGGCCATGGTGTT+TGG | 0.389912 | 3.1:-84058146 | MS.gene42611:CDS |
| AACGACATCGAGCAACGAAC+CGG | 0.410241 | 3.1:+84061228 | None:intergenic |
| TACAAGCGAGATACTATTGC+TGG | 0.411415 | 3.1:+84058074 | None:intergenic |
| TTTGTTGCTTTCGGGGATGA+TGG | 0.428043 | 3.1:-84058766 | MS.gene42611:CDS |
| AGAAGAGATAGTTGTGAAGA+GGG | 0.446517 | 3.1:-84058171 | MS.gene42611:CDS |
| TAGAAGAGATAGTTGTGAAG+AGG | 0.455201 | 3.1:-84058172 | MS.gene42611:CDS |
| TGGTAGGTGGGAGAATTAAG+AGG | 0.466502 | 3.1:+84061280 | None:intergenic |
| ATTCGCAGGCCATCTCTAGA+AGG | 0.470601 | 3.1:-84058481 | MS.gene42611:intron |
| TGTGAAGAGGGTTGAAAAGA+AGG | 0.489246 | 3.1:-84058159 | MS.gene42611:CDS |
| TTAACATAAACAAGAACATA+AGG | 0.494659 | 3.1:-84058819 | MS.gene42611:CDS |
| AGACACAGATCAACTGCAAA+TGG | 0.502992 | 3.1:-84061397 | MS.gene42611:CDS |
| TGTTATGCTGTTAAGTTGTA+CGG | 0.509406 | 3.1:-84061422 | MS.gene42611:CDS |
| GTCCCTTGACATCATGATCA+AGG | 0.517248 | 3.1:+84058111 | None:intergenic |
| GGTAGGTGGGAGAATTAAGA+GGG | 0.519339 | 3.1:+84061281 | None:intergenic |
| GCAGCTTCAATTTATGGCTG+TGG | 0.525817 | 3.1:-84061446 | MS.gene42611:CDS |
| CTTGTTTATGTTAATCGAAG+CGG | 0.533853 | 3.1:+84058828 | None:intergenic |
| AATAGTATCTCGCTTGTACA+AGG | 0.537580 | 3.1:-84058069 | MS.gene42611:CDS |
| TTGTAATGTGGCACAATTGA+GGG | 0.543976 | 3.1:+84059622 | None:intergenic |
| TATCTCGCTTGTACAAGGAA+TGG | 0.544751 | 3.1:-84058064 | MS.gene42611:CDS |
| AGATGCCCTCACTGATTCTA+GGG | 0.546079 | 3.1:+84061357 | None:intergenic |
| GAATGGAAGCATAATGTTGA+TGG | 0.547788 | 3.1:+84061260 | None:intergenic |
| TGATGTCAAGGGACATTACA+AGG | 0.549802 | 3.1:-84058102 | MS.gene42611:CDS |
| GCATAATGTTGATGGTAGGT+GGG | 0.554786 | 3.1:+84061268 | None:intergenic |
| TTATGGAAAGTTTGTAGCTG+AGG | 0.563769 | 3.1:-84058453 | MS.gene42611:CDS |
| GAGCCTTGATCATGATGTCA+AGG | 0.568630 | 3.1:-84058114 | MS.gene42611:CDS |
| ATAATGAATCCTTCTAGAGA+TGG | 0.570026 | 3.1:+84058472 | None:intergenic |
| TGAGCCTTTAATTCGTGCCA+AGG | 0.575950 | 3.1:-84058402 | MS.gene42611:intron |
| AGCATAATGTTGATGGTAGG+TGG | 0.585994 | 3.1:+84061267 | None:intergenic |
| TACTGAAGCCATTCAAGCCA+AGG | 0.587805 | 3.1:-84061197 | MS.gene42611:intron |
| CGAACCGGAAAAGTGAGGAA+TGG | 0.610407 | 3.1:+84061243 | None:intergenic |
| GCCACATTACAACTTCTCAC+AGG | 0.612065 | 3.1:-84059611 | MS.gene42611:intron |
| GGAAGCATAATGTTGATGGT+AGG | 0.616006 | 3.1:+84061264 | None:intergenic |
| AGCAACGAACCGGAAAAGTG+AGG | 0.623308 | 3.1:+84061238 | None:intergenic |
| GAGGGTTGAAAAGAAGGCCA+TGG | 0.631982 | 3.1:-84058153 | MS.gene42611:CDS |
| CACTTCTTGACCAAACACCA+TGG | 0.632219 | 3.1:+84058136 | None:intergenic |
| AGCCTTGATCATGATGTCAA+GGG | 0.643010 | 3.1:-84058113 | MS.gene42611:CDS |
| GTTGTAATGTGGCACAATTG+AGG | 0.646000 | 3.1:+84059621 | None:intergenic |
| ACCTGTGAGAAGTTGTAATG+TGG | 0.704606 | 3.1:+84059610 | None:intergenic |
| AATACACCCTAGAATCAGTG+AGG | 0.710690 | 3.1:-84061363 | MS.gene42611:CDS |
| ATACACCCTAGAATCAGTGA+GGG | 0.715519 | 3.1:-84061362 | MS.gene42611:CDS |
| TAATGTGGCACAATTGAGGG+TGG | 0.727705 | 3.1:+84059625 | None:intergenic |
| ATTAAAGGCTCATAGTCACG+AGG | 0.752224 | 3.1:+84058413 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTAATACAGAAAATTT+AGG | + | chr3.1:84059695-84059714 | None:intergenic | 10.0% |
| !!! | ATTTTCTGTATTAAATAAAT+TGG | - | chr3.1:84059697-84059716 | MS.gene42611:intron | 10.0% |
| !!! | ATTTTGTATTAGAATTTATT+GGG | - | chr3.1:84058338-84058357 | MS.gene42611:intron | 10.0% |
| !!! | ATTTTTCTAAAAATAATCTT+TGG | - | chr3.1:84060101-84060120 | MS.gene42611:intron | 10.0% |
| !!! | TAGTTTTAAAAGTAATAATT+TGG | + | chr3.1:84059150-84059169 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAAAACCAG+AGG | + | chr3.1:84058458-84058477 | None:intergenic | 15.0% |
| !! | AAATAAAGCCAAAAATAAAT+AGG | + | chr3.1:84058876-84058895 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr3.1:84059174-84059193 | None:intergenic | 15.0% |
| !! | AGTTATAGATGATTAAAATA+CGG | - | chr3.1:84058727-84058746 | MS.gene42611:CDS | 15.0% |
| !! | TTAAGAATCTTAAATACAAT+AGG | - | chr3.1:84059375-84059394 | MS.gene42611:intron | 15.0% |
| !!! | ACATTCTTTATTTTTTTTGA+TGG | + | chr3.1:84058981-84059000 | None:intergenic | 15.0% |
| !!! | CGAATATATTTTATAGAATA+AGG | + | chr3.1:84060965-84060984 | None:intergenic | 15.0% |
| !!! | GATCTAATGATATTTTAAAA+GGG | - | chr3.1:84058783-84058802 | MS.gene42611:CDS | 15.0% |
| !!! | GATTTTGTATTAGAATTTAT+TGG | - | chr3.1:84058337-84058356 | MS.gene42611:intron | 15.0% |
| !!! | TAAGACAATTTTGTTATATT+TGG | - | chr3.1:84060051-84060070 | MS.gene42611:intron | 15.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | chr3.1:84059164-84059183 | MS.gene42611:intron | 20.0% |
| !! | AAATCAAAAAGAAGAAGAAA+AGG | - | chr3.1:84060186-84060205 | MS.gene42611:intron | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr3.1:84059087-84059106 | None:intergenic | 20.0% |
| !! | ATAAATAAAACAAGATGCAT+AGG | + | chr3.1:84058539-84058558 | None:intergenic | 20.0% |
| !! | ATGTAAAAATGAGAAAATCA+AGG | + | chr3.1:84060894-84060913 | None:intergenic | 20.0% |
| !! | ATGTTAGTGGAAAATAATAA+AGG | - | chr3.1:84058761-84058780 | MS.gene42611:CDS | 20.0% |
| !! | ATTCTATAAAATATATTCGC+AGG | - | chr3.1:84060966-84060985 | MS.gene42611:intron | 20.0% |
| !! | TCAAAATTGTATGAAAATCA+AGG | + | chr3.1:84059569-84059588 | None:intergenic | 20.0% |
| !! | TCTATCTTTGTAATATGTAT+AGG | + | chr3.1:84060240-84060259 | None:intergenic | 20.0% |
| !! | TCTTATTAACAAGATAAAGA+TGG | - | chr3.1:84060818-84060837 | MS.gene42611:intron | 20.0% |
| !! | TGAAATATTATTCGTTAGTT+AGG | - | chr3.1:84059770-84059789 | MS.gene42611:intron | 20.0% |
| !! | TTAACATAAACAAGAACATA+AGG | - | chr3.1:84060642-84060661 | MS.gene42611:intron | 20.0% |
| !! | TTCTGTATTAAATAAATTGG+TGG | - | chr3.1:84059700-84059719 | MS.gene42611:intron | 20.0% |
| !! | TTTATATCAAAGGAAGATAT+TGG | - | chr3.1:84060319-84060338 | MS.gene42611:intron | 20.0% |
| !!! | AAAAATAATCTTTGGAAATG+CGG | - | chr3.1:84060109-84060128 | MS.gene42611:intron | 20.0% |
| !!! | AATTTTGCAGGTAAAATTTT+CGG | - | chr3.1:84060751-84060770 | MS.gene42611:intron | 20.0% |
| !!! | ATTTCCACGAATAAATTTTA+TGG | + | chr3.1:84060536-84060555 | None:intergenic | 20.0% |
| !!! | CATTTTGAAACAAATTGTTT+TGG | + | chr3.1:84059047-84059066 | None:intergenic | 20.0% |
| !!! | GGATCTAATGATATTTTAAA+AGG | - | chr3.1:84058782-84058801 | MS.gene42611:CDS | 20.0% |
| !!! | TCTCAAAAATATGTTTTACT+GGG | + | chr3.1:84060273-84060292 | None:intergenic | 20.0% |
| !!! | TCTTTATTTTTTTTGATGGT+CGG | + | chr3.1:84058977-84058996 | None:intergenic | 20.0% |
| !!! | TTCATTAAATTTTCATTTCG+TGG | + | chr3.1:84059519-84059538 | None:intergenic | 20.0% |
| !!! | TTCTAATGCTTTTATATCAA+AGG | - | chr3.1:84060309-84060328 | MS.gene42611:intron | 20.0% |
| !!! | TTCTCAAAAATATGTTTTAC+TGG | + | chr3.1:84060274-84060293 | None:intergenic | 20.0% |
| !!! | TTTGATGGTAGTAAAAATAA+TGG | - | chr3.1:84059920-84059939 | MS.gene42611:intron | 20.0% |
| !!! | TTTTGGTGTAAAAATTGAAA+CGG | - | chr3.1:84061206-84061225 | MS.gene42611:CDS | 20.0% |
| ! | ATAGATGATTAAAATACGGT+AGG | - | chr3.1:84058731-84058750 | MS.gene42611:CDS | 25.0% |
| ! | ATCTTGTTAATAAGAACCAA+GGG | + | chr3.1:84060813-84060832 | None:intergenic | 25.0% |
| ! | ATGCAACAATAAAGAATGTA+TGG | - | chr3.1:84058914-84058933 | MS.gene42611:intron | 25.0% |
| ! | CTCTTGAATTGATTAGAAAA+GGG | + | chr3.1:84060435-84060454 | None:intergenic | 25.0% |
| ! | CTTTCATTAATTCGATTGTA+AGG | + | chr3.1:84059317-84059336 | None:intergenic | 25.0% |
| ! | GTAAAAATTGAAACGGTAAA+TGG | - | chr3.1:84061213-84061232 | MS.gene42611:CDS | 25.0% |
| ! | TATCTTGTTAATAAGAACCA+AGG | + | chr3.1:84060814-84060833 | None:intergenic | 25.0% |
| ! | TCAACCATGAAAAGAAAATA+AGG | - | chr3.1:84060570-84060589 | MS.gene42611:intron | 25.0% |
| ! | TCCAAAACTCTTCAATTTAT+CGG | - | chr3.1:84058403-84058422 | MS.gene42611:CDS | 25.0% |
| ! | TCGAATTAATGAAAGAGAAA+TGG | - | chr3.1:84059322-84059341 | MS.gene42611:intron | 25.0% |
| ! | TCTCTTGAATTGATTAGAAA+AGG | + | chr3.1:84060436-84060455 | None:intergenic | 25.0% |
| ! | TGTTCCATAAAATTTATTCG+TGG | - | chr3.1:84060529-84060548 | MS.gene42611:intron | 25.0% |
| !! | ATTAAGTTGTAATCATGTGA+CGG | + | chr3.1:84059642-84059661 | None:intergenic | 25.0% |
| !! | CGTTTAAAACTTAAATGTGA+GGG | + | chr3.1:84058581-84058600 | None:intergenic | 25.0% |
| !! | CTCAAAAATATGTTTTACTG+GGG | + | chr3.1:84060272-84060291 | None:intergenic | 25.0% |
| !! | CTTTATAAGGATTTTCTTCA+GGG | + | chr3.1:84059808-84059827 | None:intergenic | 25.0% |
| !! | TTTATGTTGTTACTACGTTT+TGG | - | chr3.1:84061189-84061208 | MS.gene42611:intron | 25.0% |
| !!! | AAGTTCAACATTTTTAGTCA+TGG | + | chr3.1:84061430-84061449 | None:intergenic | 25.0% |
| !!! | AGAGGTTACCTATTTATTTT+TGG | - | chr3.1:84058865-84058884 | MS.gene42611:intron | 25.0% |
| !!! | AGATCCTTATTTTCTTTTCA+TGG | + | chr3.1:84060577-84060596 | None:intergenic | 25.0% |
| !!! | AGTTCAACATTTTTAGTCAT+GGG | + | chr3.1:84061429-84061448 | None:intergenic | 25.0% |
| !!! | CCTCACATTTAAGTTTTAAA+CGG | - | chr3.1:84058579-84058598 | MS.gene42611:intron | 25.0% |
| !!! | CGTTTTTTAAATGCAAAACT+TGG | - | chr3.1:84061163-84061182 | MS.gene42611:intron | 25.0% |
| !!! | CTTTATTTTTTTTGATGGTC+GGG | + | chr3.1:84058976-84058995 | None:intergenic | 25.0% |
| !!! | TTTATTTTTTTTGATGGTCG+GGG | + | chr3.1:84058975-84058994 | None:intergenic | 25.0% |
| AAAAAAAGAGTAGGAAGATG+CGG | + | chr3.1:84058430-84058449 | None:intergenic | 30.0% | |
| AAAGGAAGATATTGGAGAAA+AGG | - | chr3.1:84060327-84060346 | MS.gene42611:intron | 30.0% | |
| AAGATAAAGATGGATATCGT+AGG | - | chr3.1:84060828-84060847 | MS.gene42611:intron | 30.0% | |
| AAGGAAGATATTGGAGAAAA+GGG | - | chr3.1:84060328-84060347 | MS.gene42611:intron | 30.0% | |
| CCTGAAGAAAATCCTTATAA+AGG | - | chr3.1:84059806-84059825 | MS.gene42611:intron | 30.0% | |
| CTCGATTACAGATAATTCTA+AGG | - | chr3.1:84060387-84060406 | MS.gene42611:intron | 30.0% | |
| CTGTGTGATTTGATATTCTA+GGG | - | chr3.1:84059889-84059908 | MS.gene42611:intron | 30.0% | |
| CTTAGAATTATCTGTAATCG+AGG | + | chr3.1:84060389-84060408 | None:intergenic | 30.0% | |
| CTTGTTTATGTTAATCGAAG+CGG | + | chr3.1:84060636-84060655 | None:intergenic | 30.0% | |
| GAATTGATTAGAAAAGGGTT+TGG | + | chr3.1:84060430-84060449 | None:intergenic | 30.0% | |
| GAGGATAAGAAAAAAAGAGT+AGG | + | chr3.1:84058439-84058458 | None:intergenic | 30.0% | |
| GATTGTAAGGACTAAATTGT+TGG | + | chr3.1:84059304-84059323 | None:intergenic | 30.0% | |
| GGTGGTAAAATTCCTTTATA+AGG | + | chr3.1:84059821-84059840 | None:intergenic | 30.0% | |
| TTAAAACTTAAATGTGAGGG+AGG | + | chr3.1:84058578-84058597 | None:intergenic | 30.0% | |
| TTTCCAGTTTCAAATATGAG+AGG | + | chr3.1:84058303-84058322 | None:intergenic | 30.0% | |
| ! | ATAATGAATCCTTCTAGAGA+TGG | + | chr3.1:84060992-84061011 | None:intergenic | 30.0% |
| ! | ATCTCTAGAAGGATTCATTA+TGG | - | chr3.1:84060991-84061010 | MS.gene42611:intron | 30.0% |
| ! | ATTCCTCTCATATTTGAAAC+TGG | - | chr3.1:84058297-84058316 | MS.gene42611:intron | 30.0% |
| ! | CATTTCAATTTTCACTGCAT+TGG | + | chr3.1:84059432-84059451 | None:intergenic | 30.0% |
| ! | CCGTTTAAAACTTAAATGTG+AGG | + | chr3.1:84058582-84058601 | None:intergenic | 30.0% |
| ! | CCTTTATAAGGATTTTCTTC+AGG | + | chr3.1:84059809-84059828 | None:intergenic | 30.0% |
| ! | GGAAGACAACACAATTTTTA+AGG | + | chr3.1:84058838-84058857 | None:intergenic | 30.0% |
| ! | GTAGTGTGTAGAGTATTAAT+TGG | + | chr3.1:84059125-84059144 | None:intergenic | 30.0% |
| ! | TAGTGATCTTTCAATTTTGC+AGG | - | chr3.1:84060739-84060758 | MS.gene42611:intron | 30.0% |
| ! | TCCGATAAATTGAAGAGTTT+TGG | + | chr3.1:84058407-84058426 | None:intergenic | 30.0% |
| ! | TGTGTAGAGTATTAATTGGA+GGG | + | chr3.1:84059121-84059140 | None:intergenic | 30.0% |
| ! | TGTTATGCTGTTAAGTTGTA+CGG | - | chr3.1:84058039-84058058 | MS.gene42611:CDS | 30.0% |
| !! | TCTAGGGCTATTTTATTTGA+TGG | - | chr3.1:84059905-84059924 | MS.gene42611:intron | 30.0% |
| !!! | ACTCTTTTTTTCTTATCCTC+TGG | - | chr3.1:84058439-84058458 | MS.gene42611:CDS | 30.0% |
| !!! | ATTGAAGAGTTTTGGATCAA+AGG | + | chr3.1:84058399-84058418 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr3.1:84059255-84059274 | None:intergenic | 30.0% |
| AACAAGATCACTGTATACCT+TGG | + | chr3.1:84061079-84061098 | None:intergenic | 35.0% | |
| AATAGGTAACCTCTTACATG+TGG | + | chr3.1:84058859-84058878 | None:intergenic | 35.0% | |
| AATAGTATCTCGCTTGTACA+AGG | - | chr3.1:84061392-84061411 | MS.gene42611:CDS | 35.0% | |
| AGAAGAGATAGTTGTGAAGA+GGG | - | chr3.1:84061290-84061309 | MS.gene42611:CDS | 35.0% | |
| CATAAAATATGCAAGGTCTG+GGG | - | chr3.1:84058943-84058962 | MS.gene42611:intron | 35.0% | |
| CCTAGAATATCAAATCACAC+AGG | + | chr3.1:84059891-84059910 | None:intergenic | 35.0% | |
| CCTGTGTGATTTGATATTCT+AGG | - | chr3.1:84059888-84059907 | MS.gene42611:intron | 35.0% | |
| GACAGTGCATAAAATATGCA+AGG | - | chr3.1:84058936-84058955 | MS.gene42611:intron | 35.0% | |
| GATGAAGCAGCTTCAATTTA+TGG | - | chr3.1:84058009-84058028 | MS.gene42611:CDS | 35.0% | |
| GCATAAAATATGCAAGGTCT+GGG | - | chr3.1:84058942-84058961 | MS.gene42611:intron | 35.0% | |
| TAGAAGAGATAGTTGTGAAG+AGG | - | chr3.1:84061289-84061308 | MS.gene42611:CDS | 35.0% | |
| TATACCTTGGCACGAATTAA+AGG | + | chr3.1:84061066-84061085 | None:intergenic | 35.0% | |
| TGCATAAAATATGCAAGGTC+TGG | - | chr3.1:84058941-84058960 | MS.gene42611:intron | 35.0% | |
| TTATGGAAAGTTTGTAGCTG+AGG | - | chr3.1:84061008-84061027 | MS.gene42611:intron | 35.0% | |
| TTGTAAGGTTGAACAACATG+AGG | - | chr3.1:84058477-84058496 | MS.gene42611:intron | 35.0% | |
| TTGTAATGTGGCACAATTGA+GGG | + | chr3.1:84059842-84059861 | None:intergenic | 35.0% | |
| ! | GAATGGAAGCATAATGTTGA+TGG | + | chr3.1:84058204-84058223 | None:intergenic | 35.0% |
| ! | GTGTGTAGAGTATTAATTGG+AGG | + | chr3.1:84059122-84059141 | None:intergenic | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr3.1:84059021-84059040 | None:intergenic | 35.0% |
| !! | TCCTAGTCCTTTTAGGAATT+GGG | - | chr3.1:84060774-84060793 | MS.gene42611:intron | 35.0% |
| !!! | AACGACACTCATTTTGAAAC+AGG | - | chr3.1:84059257-84059276 | MS.gene42611:intron | 35.0% |
| !!! | GGTAAATGGTTTGTTTTTGC+AGG | - | chr3.1:84061227-84061246 | MS.gene42611:CDS | 35.0% |
| AATACACCCTAGAATCAGTG+AGG | - | chr3.1:84058098-84058117 | MS.gene42611:CDS | 40.0% | |
| ACCTGTGAGAAGTTGTAATG+TGG | + | chr3.1:84059854-84059873 | None:intergenic | 40.0% | |
| AGACACAGATCAACTGCAAA+TGG | - | chr3.1:84058064-84058083 | MS.gene42611:CDS | 40.0% | |
| AGCCTTGATCATGATGTCAA+GGG | - | chr3.1:84061348-84061367 | MS.gene42611:CDS | 40.0% | |
| AGGATGCATTAGTCAAACCA+AGG | + | chr3.1:84060945-84060964 | None:intergenic | 40.0% | |
| ATACACCCTAGAATCAGTGA+GGG | - | chr3.1:84058099-84058118 | MS.gene42611:CDS | 40.0% | |
| ATTAAAGGCTCATAGTCACG+AGG | + | chr3.1:84061051-84061070 | None:intergenic | 40.0% | |
| CAGTACTCCCAATTCCTAAA+AGG | + | chr3.1:84060784-84060803 | None:intergenic | 40.0% | |
| GAGGAATTAAGCAACTACCT+TGG | + | chr3.1:84058284-84058303 | None:intergenic | 40.0% | |
| GGATGCATTAGTCAAACCAA+GGG | + | chr3.1:84060944-84060963 | None:intergenic | 40.0% | |
| GTTGTAATGTGGCACAATTG+AGG | + | chr3.1:84059843-84059862 | None:intergenic | 40.0% | |
| TACAAGCGAGATACTATTGC+TGG | + | chr3.1:84061390-84061409 | None:intergenic | 40.0% | |
| TATCTCGCTTGTACAAGGAA+TGG | - | chr3.1:84061397-84061416 | MS.gene42611:CDS | 40.0% | |
| TCCCAATTCCTAAAAGGACT+AGG | + | chr3.1:84060778-84060797 | None:intergenic | 40.0% | |
| TGATGTCAAGGGACATTACA+AGG | - | chr3.1:84061359-84061378 | MS.gene42611:CDS | 40.0% | |
| TGTGAAGAGGGTTGAAAAGA+AGG | - | chr3.1:84061302-84061321 | MS.gene42611:CDS | 40.0% | |
| TGTTGTCTTCCACATGTAAG+AGG | - | chr3.1:84058847-84058866 | MS.gene42611:CDS | 40.0% | |
| ! | GGTAGGTAAGAGTATGTTAG+TGG | - | chr3.1:84058748-84058767 | MS.gene42611:CDS | 40.0% |
| ! | TGATCAGTGCTCTAAGTCTA+AGG | - | chr3.1:84059345-84059364 | MS.gene42611:intron | 40.0% |
| ! | TTTTCGGTCCTAGTCCTTTT+AGG | - | chr3.1:84060767-84060786 | MS.gene42611:intron | 40.0% |
| !! | AGCATAATGTTGATGGTAGG+TGG | + | chr3.1:84058197-84058216 | None:intergenic | 40.0% |
| !! | GCATAATGTTGATGGTAGGT+GGG | + | chr3.1:84058196-84058215 | None:intergenic | 40.0% |
| !! | GGAAGCATAATGTTGATGGT+AGG | + | chr3.1:84058200-84058219 | None:intergenic | 40.0% |
| !! | GGGCTTCACTTGTTTGTTTT+TGG | - | chr3.1:84058358-84058377 | MS.gene42611:intron | 40.0% |
| !! | GTCCTAGTCCTTTTAGGAAT+TGG | - | chr3.1:84060773-84060792 | MS.gene42611:intron | 40.0% |
| !!! | CTTCCGCTTTTTGTTGCTTT+CGG | - | chr3.1:84060686-84060705 | MS.gene42611:intron | 40.0% |
| !!! | GACACTCATTTTGAAACAGG+AGG | - | chr3.1:84059260-84059279 | MS.gene42611:intron | 40.0% |
| !!! | TTCCGCTTTTTGTTGCTTTC+GGG | - | chr3.1:84060687-84060706 | MS.gene42611:intron | 40.0% |
| AGGGCAAGAATCGTCTAAAG+TGG | + | chr3.1:84060925-84060944 | None:intergenic | 45.0% | |
| CACTTCTTGACCAAACACCA+TGG | + | chr3.1:84061328-84061347 | None:intergenic | 45.0% | |
| CTTTAGACGATTCTTGCCCT+TGG | - | chr3.1:84060925-84060944 | MS.gene42611:intron | 45.0% | |
| GAAAAGAAGGCCATGGTGTT+TGG | - | chr3.1:84061315-84061334 | MS.gene42611:CDS | 45.0% | |
| GAGCCTTGATCATGATGTCA+AGG | - | chr3.1:84061347-84061366 | MS.gene42611:CDS | 45.0% | |
| GCAGCTTCAATTTATGGCTG+TGG | - | chr3.1:84058015-84058034 | MS.gene42611:CDS | 45.0% | |
| GCCACATTACAACTTCTCAC+AGG | - | chr3.1:84059850-84059869 | MS.gene42611:intron | 45.0% | |
| GGTAGGTGGGAGAATTAAGA+GGG | + | chr3.1:84058183-84058202 | None:intergenic | 45.0% | |
| GTCCCTTGACATCATGATCA+AGG | + | chr3.1:84061353-84061372 | None:intergenic | 45.0% | |
| TAATGTGGCACAATTGAGGG+TGG | + | chr3.1:84059839-84059858 | None:intergenic | 45.0% | |
| TACTGAAGCCATTCAAGCCA+AGG | - | chr3.1:84058264-84058283 | MS.gene42611:intron | 45.0% | |
| TCCCCGAAAGCAACAAAAAG+CGG | + | chr3.1:84060692-84060711 | None:intergenic | 45.0% | |
| TGAGCCTTTAATTCGTGCCA+AGG | - | chr3.1:84061059-84061078 | MS.gene42611:intron | 45.0% | |
| TGGTAGGTGGGAGAATTAAG+AGG | + | chr3.1:84058184-84058203 | None:intergenic | 45.0% | |
| ! | AGCAACTACCTTGGCTTGAA+TGG | + | chr3.1:84058275-84058294 | None:intergenic | 45.0% |
| ! | GGGCAAGAATCGTCTAAAGT+GGG | + | chr3.1:84060924-84060943 | None:intergenic | 45.0% |
| !! | AAGATGCCCTCACTGATTCT+AGG | + | chr3.1:84058108-84058127 | None:intergenic | 45.0% |
| !! | AGATGCCCTCACTGATTCTA+GGG | + | chr3.1:84058107-84058126 | None:intergenic | 45.0% |
| !! | GCTTCCATTCCTCACTTTTC+CGG | - | chr3.1:84058214-84058233 | MS.gene42611:CDS | 45.0% |
| !! | GGGAGTACTGTATAATCCCT+TGG | - | chr3.1:84060794-84060813 | MS.gene42611:intron | 45.0% |
| !! | TTTGTTGCTTTCGGGGATGA+TGG | - | chr3.1:84060695-84060714 | MS.gene42611:intron | 45.0% |
| !!! | TCCGCTTTTTGTTGCTTTCG+GGG | - | chr3.1:84060688-84060707 | MS.gene42611:intron | 45.0% |
| !!! | AAAAAAAAAAAAGTTTTAAA+CGG | - | chr3.1:84058615-84058634 | MS.gene42611:intron | 5.0% |
| !!! | AATTTTATTCTTTTTTTTAA+TGG | + | chr3.1:84060469-84060488 | None:intergenic | 5.0% |
| !!! | TTAAAACTTTTTTTTTTTTT+TGG | + | chr3.1:84058614-84058633 | None:intergenic | 5.0% |
| !!! | TTTTTGATTTTTTTTTTTTA+CGG | + | chr3.1:84060176-84060195 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTTTTGTA+AGG | - | chr3.1:84058462-84058481 | MS.gene42611:CDS | 5.0% |
| AACGACATCGAGCAACGAAC+CGG | + | chr3.1:84058236-84058255 | None:intergenic | 50.0% | |
| AGCAACGAACCGGAAAAGTG+AGG | + | chr3.1:84058226-84058245 | None:intergenic | 50.0% | |
| ATTCGCAGGCCATCTCTAGA+AGG | - | chr3.1:84060980-84060999 | MS.gene42611:intron | 50.0% | |
| CGAACCGGAAAAGTGAGGAA+TGG | + | chr3.1:84058221-84058240 | None:intergenic | 50.0% | |
| GAGGGTTGAAAAGAAGGCCA+TGG | - | chr3.1:84061308-84061327 | MS.gene42611:CDS | 50.0% | |
| !! | CAAAAAGCGGAAGCATCTCG+TGG | + | chr3.1:84060679-84060698 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 84058007 | 84061476 | 84058007 | ID=MS.gene42611 |
| chr3.1 | mRNA | 84058007 | 84061476 | 84058007 | ID=MS.gene42611.t1;Parent=MS.gene42611 |
| chr3.1 | exon | 84061198 | 84061476 | 84061198 | ID=MS.gene42611.t1.exon1;Parent=MS.gene42611.t1 |
| chr3.1 | CDS | 84061198 | 84061476 | 84061198 | ID=cds.MS.gene42611.t1;Parent=MS.gene42611.t1 |
| chr3.1 | exon | 84059612 | 84059695 | 84059612 | ID=MS.gene42611.t1.exon2;Parent=MS.gene42611.t1 |
| chr3.1 | CDS | 84059612 | 84059695 | 84059612 | ID=cds.MS.gene42611.t1;Parent=MS.gene42611.t1 |
| chr3.1 | exon | 84058723 | 84058866 | 84058723 | ID=MS.gene42611.t1.exon3;Parent=MS.gene42611.t1 |
| chr3.1 | CDS | 84058723 | 84058866 | 84058723 | ID=cds.MS.gene42611.t1;Parent=MS.gene42611.t1 |
| chr3.1 | exon | 84058403 | 84058495 | 84058403 | ID=MS.gene42611.t1.exon4;Parent=MS.gene42611.t1 |
| chr3.1 | CDS | 84058403 | 84058495 | 84058403 | ID=cds.MS.gene42611.t1;Parent=MS.gene42611.t1 |
| chr3.1 | exon | 84058007 | 84058234 | 84058007 | ID=MS.gene42611.t1.exon5;Parent=MS.gene42611.t1 |
| chr3.1 | CDS | 84058007 | 84058234 | 84058007 | ID=cds.MS.gene42611.t1;Parent=MS.gene42611.t1 |
| Gene Sequence |
| Protein sequence |
