Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42613.t1 | XP_003603296.2 | 95.3 | 274 | 13 | 0 | 2 | 275 | 1 | 274 | 6.70E-144 | 520 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42613.t1 | Q9S7H4 | 57.6 | 257 | 104 | 2 | 24 | 275 | 9 | 265 | 2.5e-75 | 283.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42613.t1 | G7J9U7 | 95.3 | 274 | 13 | 0 | 2 | 275 | 1 | 274 | 4.8e-144 | 520.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058208 | MS.gene42613 | 0.807151 | 5.81E-50 | -1.69E-46 |
| MS.gene060038 | MS.gene42613 | 0.804519 | 2.08E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42613.t1 | MTR_3g106000 | 95.255 | 274 | 13 | 0 | 2 | 275 | 1 | 274 | 0.0 | 544 |
| MS.gene42613.t1 | MTR_1g013820 | 61.511 | 278 | 100 | 4 | 1 | 275 | 1 | 274 | 5.77e-124 | 354 |
| MS.gene42613.t1 | MTR_1g013820 | 65.737 | 251 | 83 | 2 | 28 | 275 | 4 | 254 | 6.09e-123 | 351 |
| MS.gene42613.t1 | MTR_1g013820 | 65.339 | 251 | 82 | 3 | 28 | 275 | 4 | 252 | 2.05e-120 | 345 |
| MS.gene42613.t1 | MTR_6g013425 | 47.638 | 254 | 128 | 3 | 26 | 275 | 64 | 316 | 6.35e-78 | 239 |
| MS.gene42613.t1 | MTR_5g043210 | 49.393 | 247 | 120 | 4 | 33 | 275 | 18 | 263 | 2.48e-76 | 233 |
| MS.gene42613.t1 | MTR_5g043210 | 49.393 | 247 | 120 | 4 | 33 | 275 | 73 | 318 | 3.65e-75 | 232 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42613.t1 | AT5G10870 | 57.588 | 257 | 104 | 2 | 24 | 275 | 9 | 265 | 9.79e-100 | 293 |
| MS.gene42613.t1 | AT1G69370 | 48.810 | 252 | 124 | 3 | 29 | 275 | 65 | 316 | 5.54e-79 | 241 |
| MS.gene42613.t1 | AT3G29200 | 45.290 | 276 | 139 | 3 | 11 | 275 | 66 | 340 | 3.27e-77 | 238 |
Find 49 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGAAGCAGCTTCAATTTA+TGG | 0.102058 | 3.1:-83991653 | MS.gene42613:CDS |
| TATACCTTGGCACGAATTAA+AGG | 0.253511 | 3.1:+83988598 | None:intergenic |
| GGTGGTAAAATTCCTTTATA+AGG | 0.277992 | 3.1:+83989845 | None:intergenic |
| AAGATGCCCTCACTGATTCT+AGG | 0.300800 | 3.1:+83991557 | None:intergenic |
| AGCAACTACCTTGGCTTGAA+TGG | 0.341924 | 3.1:+83991390 | None:intergenic |
| ATCTCTAGAAGGATTCATTA+TGG | 0.362754 | 3.1:-83988670 | MS.gene42613:CDS |
| CCTGAAGAAAATCCTTATAA+AGG | 0.368752 | 3.1:-83989857 | MS.gene42613:CDS |
| GAAAAGAAGGCCATGGTGTT+TGG | 0.389912 | 3.1:-83988346 | MS.gene42613:CDS |
| AACGACATCGAGCAACGAAC+CGG | 0.410241 | 3.1:+83991429 | None:intergenic |
| TACAAGCGAGATACTATTGC+TGG | 0.411415 | 3.1:+83988274 | None:intergenic |
| TTTGTTGCTTTCGGGGATGA+TGG | 0.428043 | 3.1:-83988966 | MS.gene42613:CDS |
| AGAAGAGATAGTTGTGAAGA+GGG | 0.446517 | 3.1:-83988371 | MS.gene42613:CDS |
| TAGAAGAGATAGTTGTGAAG+AGG | 0.455201 | 3.1:-83988372 | MS.gene42613:CDS |
| TGGTAGGTGGGAGAATTAAG+AGG | 0.466502 | 3.1:+83991481 | None:intergenic |
| ATTCGCAGGCCATCTCTAGA+AGG | 0.470601 | 3.1:-83988681 | MS.gene42613:intron |
| TGTGAAGAGGGTTGAAAAGA+AGG | 0.489246 | 3.1:-83988359 | MS.gene42613:CDS |
| TTAACATAAACAAGAACATA+AGG | 0.494659 | 3.1:-83989019 | MS.gene42613:CDS |
| AGACACAGATCAACTGCAAA+TGG | 0.502992 | 3.1:-83991598 | MS.gene42613:CDS |
| TGTTATGCTGTTAAGTTGTA+CGG | 0.509406 | 3.1:-83991623 | MS.gene42613:CDS |
| GTCCCTTGACATCATGATCA+AGG | 0.517248 | 3.1:+83988311 | None:intergenic |
| GGTAGGTGGGAGAATTAAGA+GGG | 0.519339 | 3.1:+83991482 | None:intergenic |
| GCAGCTTCAATTTATGGCTG+TGG | 0.525817 | 3.1:-83991647 | MS.gene42613:CDS |
| CTTGTTTATGTTAATCGAAG+CGG | 0.533853 | 3.1:+83989028 | None:intergenic |
| AATAGTATCTCGCTTGTACA+AGG | 0.537580 | 3.1:-83988269 | MS.gene42613:CDS |
| TTGTAATGTGGCACAATTGA+GGG | 0.543976 | 3.1:+83989824 | None:intergenic |
| TATCTCGCTTGTACAAGGAA+TGG | 0.544751 | 3.1:-83988264 | MS.gene42613:CDS |
| AGATGCCCTCACTGATTCTA+GGG | 0.546079 | 3.1:+83991558 | None:intergenic |
| GAATGGAAGCATAATGTTGA+TGG | 0.547788 | 3.1:+83991461 | None:intergenic |
| TGATGTCAAGGGACATTACA+AGG | 0.549802 | 3.1:-83988302 | MS.gene42613:CDS |
| GCATAATGTTGATGGTAGGT+GGG | 0.554786 | 3.1:+83991469 | None:intergenic |
| TTATGGAAAGTTTGTAGCTG+AGG | 0.563769 | 3.1:-83988653 | MS.gene42613:CDS |
| GAGCCTTGATCATGATGTCA+AGG | 0.568630 | 3.1:-83988314 | MS.gene42613:CDS |
| ATAATGAATCCTTCTAGAGA+TGG | 0.570026 | 3.1:+83988672 | None:intergenic |
| TGAGCCTTTAATTCGTGCCA+AGG | 0.575950 | 3.1:-83988602 | MS.gene42613:intron |
| AGCATAATGTTGATGGTAGG+TGG | 0.585994 | 3.1:+83991468 | None:intergenic |
| TACTGAAGCCATTCAAGCCA+AGG | 0.587805 | 3.1:-83991398 | MS.gene42613:intron |
| CGAACCGGAAAAGTGAGGAA+TGG | 0.610407 | 3.1:+83991444 | None:intergenic |
| GCCACATTACAACTTCTCAC+AGG | 0.612065 | 3.1:-83989813 | MS.gene42613:intron |
| GGAAGCATAATGTTGATGGT+AGG | 0.616006 | 3.1:+83991465 | None:intergenic |
| AGCAACGAACCGGAAAAGTG+AGG | 0.623308 | 3.1:+83991439 | None:intergenic |
| GAGGGTTGAAAAGAAGGCCA+TGG | 0.631982 | 3.1:-83988353 | MS.gene42613:CDS |
| CACTTCTTGACCAAACACCA+TGG | 0.632219 | 3.1:+83988336 | None:intergenic |
| AGCCTTGATCATGATGTCAA+GGG | 0.643010 | 3.1:-83988313 | MS.gene42613:CDS |
| GTTGTAATGTGGCACAATTG+AGG | 0.646000 | 3.1:+83989823 | None:intergenic |
| ACCTGTGAGAAGTTGTAATG+TGG | 0.704606 | 3.1:+83989812 | None:intergenic |
| AATACACCCTAGAATCAGTG+AGG | 0.710690 | 3.1:-83991564 | MS.gene42613:CDS |
| ATACACCCTAGAATCAGTGA+GGG | 0.715519 | 3.1:-83991563 | MS.gene42613:CDS |
| TAATGTGGCACAATTGAGGG+TGG | 0.727705 | 3.1:+83989827 | None:intergenic |
| ATTAAAGGCTCATAGTCACG+AGG | 0.752224 | 3.1:+83988613 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTAATACAGAAAATTT+AGG | + | chr3.1:83989894-83989913 | None:intergenic | 10.0% |
| !!! | ATTTTCTGTATTAAATAAAT+TGG | - | chr3.1:83989896-83989915 | MS.gene42613:intron | 10.0% |
| !!! | ATTTTGTATTAGAATTTATT+GGG | - | chr3.1:83988538-83988557 | MS.gene42613:intron | 10.0% |
| !!! | ATTTTTCTAAAAATAATCTT+TGG | - | chr3.1:83990302-83990321 | MS.gene42613:intron | 10.0% |
| !!! | GTTTTTTTTTTTTTTTTGTA+AGG | - | chr3.1:83988661-83988680 | MS.gene42613:CDS | 10.0% |
| !!! | TAGTTTTAAAAGTAATAATT+TGG | + | chr3.1:83989349-83989368 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAAAACCAG+AGG | + | chr3.1:83988658-83988677 | None:intergenic | 15.0% |
| !! | AAATAAAGCCAAAAATAAAT+AGG | + | chr3.1:83989075-83989094 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr3.1:83989373-83989392 | None:intergenic | 15.0% |
| !! | AGTTATAGATGATTAAAATA+CGG | - | chr3.1:83988926-83988945 | MS.gene42613:CDS | 15.0% |
| !! | TTAAGAATCTTAAATACAAT+AGG | - | chr3.1:83989574-83989593 | MS.gene42613:intron | 15.0% |
| !!! | AAGACAATTTTTGTTATATT+TGG | - | chr3.1:83990252-83990271 | MS.gene42613:intron | 15.0% |
| !!! | ACATTCTTTATTTTTTTTGA+TGG | + | chr3.1:83989180-83989199 | None:intergenic | 15.0% |
| !!! | CGAATATATTTTATAGAATA+AGG | + | chr3.1:83991166-83991185 | None:intergenic | 15.0% |
| !!! | GATCTAATGATATTTTAAAA+GGG | - | chr3.1:83988982-83989001 | MS.gene42613:CDS | 15.0% |
| !!! | GATTTTGTATTAGAATTTAT+TGG | - | chr3.1:83988537-83988556 | MS.gene42613:intron | 15.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | chr3.1:83989363-83989382 | MS.gene42613:intron | 20.0% |
| !! | AAATCAAAAAGAAGAAGAAA+AGG | - | chr3.1:83990387-83990406 | MS.gene42613:intron | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr3.1:83989286-83989305 | None:intergenic | 20.0% |
| !! | ATAAATAAAACAAGATGCAT+AGG | + | chr3.1:83988738-83988757 | None:intergenic | 20.0% |
| !! | ATGTAAAAATGAGAAAATCA+AGG | + | chr3.1:83991095-83991114 | None:intergenic | 20.0% |
| !! | ATGTTAGTGGAAAATAATAA+AGG | - | chr3.1:83988960-83988979 | MS.gene42613:CDS | 20.0% |
| !! | ATTCTATAAAATATATTCGC+AGG | - | chr3.1:83991167-83991186 | MS.gene42613:intron | 20.0% |
| !! | TCAAAATTGTATGAAAATCA+AGG | + | chr3.1:83989768-83989787 | None:intergenic | 20.0% |
| !! | TCTATCTTTGTAATATGTAT+AGG | + | chr3.1:83990441-83990460 | None:intergenic | 20.0% |
| !! | TCTTATTAACAAGATAAAGA+TGG | - | chr3.1:83991019-83991038 | MS.gene42613:intron | 20.0% |
| !! | TGAAATATTATTCGTTAGTT+AGG | - | chr3.1:83989969-83989988 | MS.gene42613:intron | 20.0% |
| !! | TTAACATAAACAAGAACATA+AGG | - | chr3.1:83990843-83990862 | MS.gene42613:intron | 20.0% |
| !! | TTCTGTATTAAATAAATTGG+TGG | - | chr3.1:83989899-83989918 | MS.gene42613:intron | 20.0% |
| !! | TTTATATCAAAGGAAGATAT+TGG | - | chr3.1:83990520-83990539 | MS.gene42613:intron | 20.0% |
| !!! | AAAAATAATCTTTGGAAATG+CGG | - | chr3.1:83990310-83990329 | MS.gene42613:intron | 20.0% |
| !!! | AATTTTGCAGGTAAAATTTT+CGG | - | chr3.1:83990952-83990971 | MS.gene42613:intron | 20.0% |
| !!! | ATTTCCACGAATAAATTTTA+TGG | + | chr3.1:83990737-83990756 | None:intergenic | 20.0% |
| !!! | CATTTTGAAACAAATTGTTT+TGG | + | chr3.1:83989246-83989265 | None:intergenic | 20.0% |
| !!! | GGATCTAATGATATTTTAAA+AGG | - | chr3.1:83988981-83989000 | MS.gene42613:CDS | 20.0% |
| !!! | TCTCAAAAATATGTTTTACT+GGG | + | chr3.1:83990474-83990493 | None:intergenic | 20.0% |
| !!! | TCTTTATTTTTTTTGATGGT+CGG | + | chr3.1:83989176-83989195 | None:intergenic | 20.0% |
| !!! | TTCATTAAATTTTCATTTCG+TGG | + | chr3.1:83989718-83989737 | None:intergenic | 20.0% |
| !!! | TTCTAATGCTTTTATATCAA+AGG | - | chr3.1:83990510-83990529 | MS.gene42613:intron | 20.0% |
| !!! | TTCTCAAAAATATGTTTTAC+TGG | + | chr3.1:83990475-83990494 | None:intergenic | 20.0% |
| !!! | TTTGATGGTAGTAAAAATAA+TGG | - | chr3.1:83990120-83990139 | MS.gene42613:intron | 20.0% |
| !!! | TTTTGGTGTAAAAATTGAAA+CGG | - | chr3.1:83991407-83991426 | MS.gene42613:CDS | 20.0% |
| ! | ATAGATGATTAAAATACGGT+AGG | - | chr3.1:83988930-83988949 | MS.gene42613:CDS | 25.0% |
| ! | ATCTTGTTAATAAGAACCAA+GGG | + | chr3.1:83991014-83991033 | None:intergenic | 25.0% |
| ! | ATGCAACAATAAAGAATGTA+TGG | - | chr3.1:83989113-83989132 | MS.gene42613:intron | 25.0% |
| ! | CTCTTGAATTGATTAGAAAA+GGG | + | chr3.1:83990636-83990655 | None:intergenic | 25.0% |
| ! | CTTTCATTAATTCGATTGTA+AGG | + | chr3.1:83989516-83989535 | None:intergenic | 25.0% |
| ! | GTAAAAATTGAAACGGTAAA+TGG | - | chr3.1:83991414-83991433 | MS.gene42613:CDS | 25.0% |
| ! | TATCTTGTTAATAAGAACCA+AGG | + | chr3.1:83991015-83991034 | None:intergenic | 25.0% |
| ! | TCAACCATGAAAAGAAAATA+AGG | - | chr3.1:83990771-83990790 | MS.gene42613:intron | 25.0% |
| ! | TCCAAAACTCTTCAATTTAT+CGG | - | chr3.1:83988603-83988622 | MS.gene42613:CDS | 25.0% |
| ! | TCGAATTAATGAAAGAGAAA+TGG | - | chr3.1:83989521-83989540 | MS.gene42613:intron | 25.0% |
| ! | TCTCTTGAATTGATTAGAAA+AGG | + | chr3.1:83990637-83990656 | None:intergenic | 25.0% |
| ! | TGTTCCATAAAATTTATTCG+TGG | - | chr3.1:83990730-83990749 | MS.gene42613:intron | 25.0% |
| !! | ATTAAGTTGTAATCATGTGA+CGG | + | chr3.1:83989841-83989860 | None:intergenic | 25.0% |
| !! | CGTTTAAAACTTAAATGTGA+GGG | + | chr3.1:83988780-83988799 | None:intergenic | 25.0% |
| !! | CTCAAAAATATGTTTTACTG+GGG | + | chr3.1:83990473-83990492 | None:intergenic | 25.0% |
| !! | CTTTATAAGGATTTTCTTCA+GGG | + | chr3.1:83990007-83990026 | None:intergenic | 25.0% |
| !! | TTTATGTTGTTACTACGTTT+TGG | - | chr3.1:83991390-83991409 | MS.gene42613:intron | 25.0% |
| !!! | AAGTTCAACATTTTTAGTCA+TGG | + | chr3.1:83991631-83991650 | None:intergenic | 25.0% |
| !!! | AGAGGTTACCTATTTATTTT+TGG | - | chr3.1:83989064-83989083 | MS.gene42613:intron | 25.0% |
| !!! | AGATCCTTATTTTCTTTTCA+TGG | + | chr3.1:83990778-83990797 | None:intergenic | 25.0% |
| !!! | AGTTCAACATTTTTAGTCAT+GGG | + | chr3.1:83991630-83991649 | None:intergenic | 25.0% |
| !!! | CCTCACATTTAAGTTTTAAA+CGG | - | chr3.1:83988778-83988797 | MS.gene42613:intron | 25.0% |
| !!! | CGTTTTTTAAATGCAAAACT+TGG | - | chr3.1:83991364-83991383 | MS.gene42613:intron | 25.0% |
| !!! | CTTTATTTTTTTTGATGGTC+GGG | + | chr3.1:83989175-83989194 | None:intergenic | 25.0% |
| !!! | TTTATTTTTTTTGATGGTCG+GGG | + | chr3.1:83989174-83989193 | None:intergenic | 25.0% |
| AAAAAAAGAGTAGGAAGATG+CGG | + | chr3.1:83988630-83988649 | None:intergenic | 30.0% | |
| AAAGGAAGATATTGGAGAAA+AGG | - | chr3.1:83990528-83990547 | MS.gene42613:intron | 30.0% | |
| AAGATAAAGATGGATATCGT+AGG | - | chr3.1:83991029-83991048 | MS.gene42613:intron | 30.0% | |
| AAGGAAGATATTGGAGAAAA+GGG | - | chr3.1:83990529-83990548 | MS.gene42613:intron | 30.0% | |
| CCTGAAGAAAATCCTTATAA+AGG | - | chr3.1:83990005-83990024 | MS.gene42613:intron | 30.0% | |
| CTCGATTACAGATAATTCTA+AGG | - | chr3.1:83990588-83990607 | MS.gene42613:intron | 30.0% | |
| CTGTGTGATTTGATATTCTA+GGG | - | chr3.1:83990088-83990107 | MS.gene42613:intron | 30.0% | |
| CTTAGAATTATCTGTAATCG+AGG | + | chr3.1:83990590-83990609 | None:intergenic | 30.0% | |
| CTTGTTTATGTTAATCGAAG+CGG | + | chr3.1:83990837-83990856 | None:intergenic | 30.0% | |
| GAATTGATTAGAAAAGGGTT+TGG | + | chr3.1:83990631-83990650 | None:intergenic | 30.0% | |
| GAGGATAAGAAAAAAAGAGT+AGG | + | chr3.1:83988639-83988658 | None:intergenic | 30.0% | |
| GATTGTAAGGACTAAATTGT+TGG | + | chr3.1:83989503-83989522 | None:intergenic | 30.0% | |
| GGTGGTAAAATTCCTTTATA+AGG | + | chr3.1:83990020-83990039 | None:intergenic | 30.0% | |
| TGTGTGATTTGATATTCTAG+GGG | - | chr3.1:83990089-83990108 | MS.gene42613:intron | 30.0% | |
| TTAAAACTTAAATGTGAGGG+AGG | + | chr3.1:83988777-83988796 | None:intergenic | 30.0% | |
| TTTCCAGTTTCAAATATGAG+AGG | + | chr3.1:83988503-83988522 | None:intergenic | 30.0% | |
| ! | ATAATGAATCCTTCTAGAGA+TGG | + | chr3.1:83991193-83991212 | None:intergenic | 30.0% |
| ! | ATCTCTAGAAGGATTCATTA+TGG | - | chr3.1:83991192-83991211 | MS.gene42613:intron | 30.0% |
| ! | ATTCCTCTCATATTTGAAAC+TGG | - | chr3.1:83988497-83988516 | MS.gene42613:intron | 30.0% |
| ! | CATTTCAATTTTCACTGCAT+TGG | + | chr3.1:83989631-83989650 | None:intergenic | 30.0% |
| ! | CCGTTTAAAACTTAAATGTG+AGG | + | chr3.1:83988781-83988800 | None:intergenic | 30.0% |
| ! | CCTTTATAAGGATTTTCTTC+AGG | + | chr3.1:83990008-83990027 | None:intergenic | 30.0% |
| ! | GGAAGACAACACAATTTTTA+AGG | + | chr3.1:83989037-83989056 | None:intergenic | 30.0% |
| ! | GTAGTGTGTAGAGTATTAAT+TGG | + | chr3.1:83989324-83989343 | None:intergenic | 30.0% |
| ! | TAGTGATCTTTCAATTTTGC+AGG | - | chr3.1:83990940-83990959 | MS.gene42613:intron | 30.0% |
| ! | TCCGATAAATTGAAGAGTTT+TGG | + | chr3.1:83988607-83988626 | None:intergenic | 30.0% |
| ! | TGTGTAGAGTATTAATTGGA+GGG | + | chr3.1:83989320-83989339 | None:intergenic | 30.0% |
| ! | TGTTATGCTGTTAAGTTGTA+CGG | - | chr3.1:83988239-83988258 | MS.gene42613:CDS | 30.0% |
| !!! | ACTCTTTTTTTCTTATCCTC+TGG | - | chr3.1:83988639-83988658 | MS.gene42613:CDS | 30.0% |
| !!! | ATTGAAGAGTTTTGGATCAA+AGG | + | chr3.1:83988599-83988618 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr3.1:83989454-83989473 | None:intergenic | 30.0% |
| AACAAGATCACTGTATACCT+TGG | + | chr3.1:83991280-83991299 | None:intergenic | 35.0% | |
| AATAGGTAACCTCTTACATG+TGG | + | chr3.1:83989058-83989077 | None:intergenic | 35.0% | |
| AATAGTATCTCGCTTGTACA+AGG | - | chr3.1:83991593-83991612 | MS.gene42613:CDS | 35.0% | |
| AGAAGAGATAGTTGTGAAGA+GGG | - | chr3.1:83991491-83991510 | MS.gene42613:CDS | 35.0% | |
| CATAAAATATGCAAGGTCTG+GGG | - | chr3.1:83989142-83989161 | MS.gene42613:intron | 35.0% | |
| CCTAGAATATCAAATCACAC+AGG | + | chr3.1:83990090-83990109 | None:intergenic | 35.0% | |
| CCTGTGTGATTTGATATTCT+AGG | - | chr3.1:83990087-83990106 | MS.gene42613:intron | 35.0% | |
| GACAGTGCATAAAATATGCA+AGG | - | chr3.1:83989135-83989154 | MS.gene42613:intron | 35.0% | |
| GATGAAGCAGCTTCAATTTA+TGG | - | chr3.1:83988209-83988228 | MS.gene42613:CDS | 35.0% | |
| GCATAAAATATGCAAGGTCT+GGG | - | chr3.1:83989141-83989160 | MS.gene42613:intron | 35.0% | |
| TAGAAGAGATAGTTGTGAAG+AGG | - | chr3.1:83991490-83991509 | MS.gene42613:CDS | 35.0% | |
| TATACCTTGGCACGAATTAA+AGG | + | chr3.1:83991267-83991286 | None:intergenic | 35.0% | |
| TGCATAAAATATGCAAGGTC+TGG | - | chr3.1:83989140-83989159 | MS.gene42613:intron | 35.0% | |
| TTATGGAAAGTTTGTAGCTG+AGG | - | chr3.1:83991209-83991228 | MS.gene42613:intron | 35.0% | |
| TTGTAAGGTTGAACAACATG+AGG | - | chr3.1:83988676-83988695 | MS.gene42613:CDS | 35.0% | |
| TTGTAATGTGGCACAATTGA+GGG | + | chr3.1:83990041-83990060 | None:intergenic | 35.0% | |
| ! | GAATGGAAGCATAATGTTGA+TGG | + | chr3.1:83988404-83988423 | None:intergenic | 35.0% |
| ! | GTGTGTAGAGTATTAATTGG+AGG | + | chr3.1:83989321-83989340 | None:intergenic | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr3.1:83989220-83989239 | None:intergenic | 35.0% |
| !! | CTAGGGGCTATTTTATTTGA+TGG | - | chr3.1:83990105-83990124 | MS.gene42613:intron | 35.0% |
| !! | TCCTAGTCCTTTTAGGAATT+GGG | - | chr3.1:83990975-83990994 | MS.gene42613:intron | 35.0% |
| !!! | AACGACACTCATTTTGAAAC+AGG | - | chr3.1:83989456-83989475 | MS.gene42613:intron | 35.0% |
| !!! | GGTAAATGGTTTGTTTTTGC+AGG | - | chr3.1:83991428-83991447 | MS.gene42613:CDS | 35.0% |
| AATACACCCTAGAATCAGTG+AGG | - | chr3.1:83988298-83988317 | MS.gene42613:CDS | 40.0% | |
| ACCTGTGAGAAGTTGTAATG+TGG | + | chr3.1:83990053-83990072 | None:intergenic | 40.0% | |
| AGACACAGATCAACTGCAAA+TGG | - | chr3.1:83988264-83988283 | MS.gene42613:CDS | 40.0% | |
| AGCCTTGATCATGATGTCAA+GGG | - | chr3.1:83991549-83991568 | MS.gene42613:CDS | 40.0% | |
| AGGATGCATTAGTCAAACCA+AGG | + | chr3.1:83991146-83991165 | None:intergenic | 40.0% | |
| ATACACCCTAGAATCAGTGA+GGG | - | chr3.1:83988299-83988318 | MS.gene42613:CDS | 40.0% | |
| ATTAAAGGCTCATAGTCACG+AGG | + | chr3.1:83991252-83991271 | None:intergenic | 40.0% | |
| CAGTACTCCCAATTCCTAAA+AGG | + | chr3.1:83990985-83991004 | None:intergenic | 40.0% | |
| GAGGAATTAAGCAACTACCT+TGG | + | chr3.1:83988484-83988503 | None:intergenic | 40.0% | |
| GGATGCATTAGTCAAACCAA+GGG | + | chr3.1:83991145-83991164 | None:intergenic | 40.0% | |
| GTTGTAATGTGGCACAATTG+AGG | + | chr3.1:83990042-83990061 | None:intergenic | 40.0% | |
| TACAAGCGAGATACTATTGC+TGG | + | chr3.1:83991591-83991610 | None:intergenic | 40.0% | |
| TATCTCGCTTGTACAAGGAA+TGG | - | chr3.1:83991598-83991617 | MS.gene42613:CDS | 40.0% | |
| TCCCAATTCCTAAAAGGACT+AGG | + | chr3.1:83990979-83990998 | None:intergenic | 40.0% | |
| TGATGTCAAGGGACATTACA+AGG | - | chr3.1:83991560-83991579 | MS.gene42613:CDS | 40.0% | |
| TGTGAAGAGGGTTGAAAAGA+AGG | - | chr3.1:83991503-83991522 | MS.gene42613:CDS | 40.0% | |
| TGTTGTCTTCCACATGTAAG+AGG | - | chr3.1:83989046-83989065 | MS.gene42613:CDS | 40.0% | |
| ! | GGTAGGTAAGAGTATGTTAG+TGG | - | chr3.1:83988947-83988966 | MS.gene42613:CDS | 40.0% |
| ! | TGATCAGTGCTCTAAGTCTA+AGG | - | chr3.1:83989544-83989563 | MS.gene42613:intron | 40.0% |
| ! | TTTTCGGTCCTAGTCCTTTT+AGG | - | chr3.1:83990968-83990987 | MS.gene42613:intron | 40.0% |
| !! | AGCATAATGTTGATGGTAGG+TGG | + | chr3.1:83988397-83988416 | None:intergenic | 40.0% |
| !! | GCATAATGTTGATGGTAGGT+GGG | + | chr3.1:83988396-83988415 | None:intergenic | 40.0% |
| !! | GGAAGCATAATGTTGATGGT+AGG | + | chr3.1:83988400-83988419 | None:intergenic | 40.0% |
| !! | GGGCTTCACTTGTTTGTTTT+TGG | - | chr3.1:83988558-83988577 | MS.gene42613:intron | 40.0% |
| !! | GTCCTAGTCCTTTTAGGAAT+TGG | - | chr3.1:83990974-83990993 | MS.gene42613:intron | 40.0% |
| !!! | CTTCCGCTTTTTGTTGCTTT+CGG | - | chr3.1:83990887-83990906 | MS.gene42613:intron | 40.0% |
| !!! | GACACTCATTTTGAAACAGG+AGG | - | chr3.1:83989459-83989478 | MS.gene42613:intron | 40.0% |
| !!! | TTCCGCTTTTTGTTGCTTTC+GGG | - | chr3.1:83990888-83990907 | MS.gene42613:intron | 40.0% |
| AGGGCAAGAATCGTCTAAAG+TGG | + | chr3.1:83991126-83991145 | None:intergenic | 45.0% | |
| CACTTCTTGACCAAACACCA+TGG | + | chr3.1:83991529-83991548 | None:intergenic | 45.0% | |
| CTTTAGACGATTCTTGCCCT+TGG | - | chr3.1:83991126-83991145 | MS.gene42613:intron | 45.0% | |
| GAAAAGAAGGCCATGGTGTT+TGG | - | chr3.1:83991516-83991535 | MS.gene42613:CDS | 45.0% | |
| GAGCCTTGATCATGATGTCA+AGG | - | chr3.1:83991548-83991567 | MS.gene42613:CDS | 45.0% | |
| GCAGCTTCAATTTATGGCTG+TGG | - | chr3.1:83988215-83988234 | MS.gene42613:CDS | 45.0% | |
| GCCACATTACAACTTCTCAC+AGG | - | chr3.1:83990049-83990068 | MS.gene42613:intron | 45.0% | |
| GGTAGGTGGGAGAATTAAGA+GGG | + | chr3.1:83988383-83988402 | None:intergenic | 45.0% | |
| GTCCCTTGACATCATGATCA+AGG | + | chr3.1:83991554-83991573 | None:intergenic | 45.0% | |
| TAATGTGGCACAATTGAGGG+TGG | + | chr3.1:83990038-83990057 | None:intergenic | 45.0% | |
| TACTGAAGCCATTCAAGCCA+AGG | - | chr3.1:83988464-83988483 | MS.gene42613:intron | 45.0% | |
| TCCCCGAAAGCAACAAAAAG+CGG | + | chr3.1:83990893-83990912 | None:intergenic | 45.0% | |
| TGAGCCTTTAATTCGTGCCA+AGG | - | chr3.1:83991260-83991279 | MS.gene42613:intron | 45.0% | |
| TGGTAGGTGGGAGAATTAAG+AGG | + | chr3.1:83988384-83988403 | None:intergenic | 45.0% | |
| ! | AGCAACTACCTTGGCTTGAA+TGG | + | chr3.1:83988475-83988494 | None:intergenic | 45.0% |
| ! | GGGCAAGAATCGTCTAAAGT+GGG | + | chr3.1:83991125-83991144 | None:intergenic | 45.0% |
| !! | AAGATGCCCTCACTGATTCT+AGG | + | chr3.1:83988308-83988327 | None:intergenic | 45.0% |
| !! | AGATGCCCTCACTGATTCTA+GGG | + | chr3.1:83988307-83988326 | None:intergenic | 45.0% |
| !! | GCTTCCATTCCTCACTTTTC+CGG | - | chr3.1:83988414-83988433 | MS.gene42613:CDS | 45.0% |
| !! | GGGAGTACTGTATAATCCCT+TGG | - | chr3.1:83990995-83991014 | MS.gene42613:intron | 45.0% |
| !! | TTTGTTGCTTTCGGGGATGA+TGG | - | chr3.1:83990896-83990915 | MS.gene42613:intron | 45.0% |
| !!! | TCCGCTTTTTGTTGCTTTCG+GGG | - | chr3.1:83990889-83990908 | MS.gene42613:intron | 45.0% |
| !!! | AAAAAAAAAAAAGTTTTAAA+CGG | - | chr3.1:83988814-83988833 | MS.gene42613:intron | 5.0% |
| !!! | AATTTTATTCTTTTTTTTAA+TGG | + | chr3.1:83990670-83990689 | None:intergenic | 5.0% |
| !!! | TTAAAACTTTTTTTTTTTTT+TGG | + | chr3.1:83988813-83988832 | None:intergenic | 5.0% |
| !!! | TTTTTGATTTTTTTTTTTTA+CGG | + | chr3.1:83990377-83990396 | None:intergenic | 5.0% |
| AACGACATCGAGCAACGAAC+CGG | + | chr3.1:83988436-83988455 | None:intergenic | 50.0% | |
| AGCAACGAACCGGAAAAGTG+AGG | + | chr3.1:83988426-83988445 | None:intergenic | 50.0% | |
| ATTCGCAGGCCATCTCTAGA+AGG | - | chr3.1:83991181-83991200 | MS.gene42613:intron | 50.0% | |
| CGAACCGGAAAAGTGAGGAA+TGG | + | chr3.1:83988421-83988440 | None:intergenic | 50.0% | |
| GAGGGTTGAAAAGAAGGCCA+TGG | - | chr3.1:83991509-83991528 | MS.gene42613:CDS | 50.0% | |
| !! | CAAAAAGCGGAAGCATCTCG+TGG | + | chr3.1:83990880-83990899 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 83988207 | 83991677 | 83988207 | ID=MS.gene42613 |
| chr3.1 | mRNA | 83988207 | 83991677 | 83988207 | ID=MS.gene42613.t1;Parent=MS.gene42613 |
| chr3.1 | exon | 83991399 | 83991677 | 83991399 | ID=MS.gene42613.t1.exon1;Parent=MS.gene42613.t1 |
| chr3.1 | CDS | 83991399 | 83991677 | 83991399 | ID=cds.MS.gene42613.t1;Parent=MS.gene42613.t1 |
| chr3.1 | exon | 83989814 | 83989897 | 83989814 | ID=MS.gene42613.t1.exon2;Parent=MS.gene42613.t1 |
| chr3.1 | CDS | 83989814 | 83989897 | 83989814 | ID=cds.MS.gene42613.t1;Parent=MS.gene42613.t1 |
| chr3.1 | exon | 83988923 | 83989066 | 83988923 | ID=MS.gene42613.t1.exon3;Parent=MS.gene42613.t1 |
| chr3.1 | CDS | 83988923 | 83989066 | 83988923 | ID=cds.MS.gene42613.t1;Parent=MS.gene42613.t1 |
| chr3.1 | exon | 83988603 | 83988695 | 83988603 | ID=MS.gene42613.t1.exon4;Parent=MS.gene42613.t1 |
| chr3.1 | CDS | 83988603 | 83988695 | 83988603 | ID=cds.MS.gene42613.t1;Parent=MS.gene42613.t1 |
| chr3.1 | exon | 83988207 | 83988434 | 83988207 | ID=MS.gene42613.t1.exon5;Parent=MS.gene42613.t1 |
| chr3.1 | CDS | 83988207 | 83988434 | 83988207 | ID=cds.MS.gene42613.t1;Parent=MS.gene42613.t1 |
| Gene Sequence |
| Protein sequence |
