Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43181.t1 | AAT45084.1 | 98.8 | 491 | 6 | 0 | 1 | 491 | 1 | 491 | 2.40E-277 | 964.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43181.t1 | P92983 | 55.9 | 499 | 210 | 6 | 1 | 490 | 1 | 498 | 3.3e-150 | 533.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43181.t1 | Q6JA03 | 98.8 | 491 | 6 | 0 | 1 | 491 | 1 | 491 | 1.7e-277 | 964.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene073368 | MS.gene43181 | PPI |
| MS.gene61281 | MS.gene43181 | PPI |
| MS.gene00318 | MS.gene43181 | PPI |
| MS.gene72354 | MS.gene43181 | PPI |
| MS.gene011574 | MS.gene43181 | PPI |
| MS.gene004578 | MS.gene43181 | PPI |
| MS.gene036485 | MS.gene43181 | PPI |
| MS.gene71995 | MS.gene43181 | PPI |
| MS.gene035333 | MS.gene43181 | PPI |
| MS.gene52423 | MS.gene43181 | PPI |
| MS.gene041559 | MS.gene43181 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43181.t1 | MTR_7g020820 | 95.927 | 491 | 20 | 0 | 1 | 491 | 1 | 491 | 0.0 | 984 |
| MS.gene43181.t1 | MTR_6g016635 | 72.709 | 491 | 132 | 2 | 1 | 491 | 1 | 489 | 0.0 | 754 |
| MS.gene43181.t1 | MTR_6g016640 | 72.301 | 491 | 134 | 2 | 1 | 491 | 1 | 489 | 0.0 | 753 |
| MS.gene43181.t1 | MTR_6g016650 | 72.301 | 491 | 134 | 2 | 1 | 491 | 1 | 489 | 0.0 | 751 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43181.t1 | AT5G38710 | 55.193 | 491 | 201 | 7 | 1 | 488 | 1 | 475 | 0.0 | 549 |
| MS.gene43181.t1 | AT5G38710 | 54.772 | 482 | 199 | 7 | 1 | 479 | 1 | 466 | 0.0 | 537 |
| MS.gene43181.t1 | AT3G30775 | 55.912 | 499 | 210 | 6 | 1 | 490 | 1 | 498 | 0.0 | 526 |
| MS.gene43181.t1 | AT3G30775 | 55.912 | 499 | 210 | 6 | 1 | 490 | 1 | 498 | 0.0 | 526 |
Find 129 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCTTCTTCTGCTGTTAA+TGG | 0.131448 | 7.2:+78454845 | None:intergenic |
| GCAAGCCAATATTCCATTAT+TGG | 0.192056 | 7.2:-78454771 | MS.gene43181:CDS |
| TCCAATTCATAACACTATTA+AGG | 0.221251 | 7.2:-78454498 | MS.gene43181:CDS |
| ATCAAAGGCTGCTGAGAAAA+TGG | 0.229693 | 7.2:-78454603 | MS.gene43181:CDS |
| AAGAAAATTGGCTGCTGATT+TGG | 0.237034 | 7.2:-78454531 | MS.gene43181:CDS |
| CGGAGTTTCCTTAGAATTCT+TGG | 0.272400 | 7.2:+78456129 | None:intergenic |
| ATGGAATTTGCACAACTATA+TGG | 0.300041 | 7.2:-78454229 | MS.gene43181:CDS |
| ATCAACCAATAATGGAATAT+TGG | 0.323034 | 7.2:+78454766 | None:intergenic |
| GGCAGTTGATTTGAGAAGTT+TGG | 0.328394 | 7.2:+78455936 | None:intergenic |
| CGACGCCGAGCTCAACTTCC+AGG | 0.345795 | 7.2:-78455992 | MS.gene43181:CDS |
| AGAAAATTGGCTGCTGATTT+GGG | 0.348106 | 7.2:-78454530 | MS.gene43181:CDS |
| GGACTTGACTCAGAGAAAAT+TGG | 0.349772 | 7.2:+78454896 | None:intergenic |
| GTTGTGCAAATTCCATCTTA+TGG | 0.359595 | 7.2:+78454236 | None:intergenic |
| TGTTCAGCATCAACCAATAA+TGG | 0.365065 | 7.2:+78454758 | None:intergenic |
| TATGTCTAGTGAAAGAAAAT+TGG | 0.367109 | 7.2:-78454543 | MS.gene43181:CDS |
| ATGGGATTTAAGTTGGTTAG+AGG | 0.368900 | 7.2:-78454572 | MS.gene43181:CDS |
| GGTGAAAACCCTATTGTGTT+TGG | 0.368909 | 7.2:-78454674 | MS.gene43181:CDS |
| TCCTTAATAGTGTTATGAAT+TGG | 0.371148 | 7.2:+78454497 | None:intergenic |
| TGAATGGTTCCAAACACAAT+AGG | 0.377372 | 7.2:+78454665 | None:intergenic |
| TCTTCTGCTGTTAATGGCTC+TGG | 0.384131 | 7.2:+78454851 | None:intergenic |
| ATGTCTGAGGCACTATCCTT+TGG | 0.385476 | 7.2:-78454205 | MS.gene43181:CDS |
| AATGTTACGTAAAGGATTAT+TGG | 0.386279 | 7.2:+78455840 | None:intergenic |
| AACCAGCATTCCACGTAAAC+CGG | 0.387024 | 7.2:+78455723 | None:intergenic |
| TCCTTTGGTTTAAGCAATGC+AGG | 0.402000 | 7.2:-78454190 | MS.gene43181:CDS |
| TAATCCCACCAAGAATTCTA+AGG | 0.403070 | 7.2:-78456137 | MS.gene43181:CDS |
| CGAGGCGAGGGCGGGTTGGA+AGG | 0.409462 | 7.2:+78456086 | None:intergenic |
| GCTCTGGTCTCTTCCTTGTA+TGG | 0.417428 | 7.2:+78454867 | None:intergenic |
| TTACGTGGAATGCTGGTTTA+CGG | 0.420959 | 7.2:-78455718 | MS.gene43181:CDS |
| GCAACTCATAACATTGAATC+AGG | 0.421031 | 7.2:-78454398 | MS.gene43181:intron |
| TTCCATGGTAAAACAAATGA+AGG | 0.426713 | 7.2:+78454932 | None:intergenic |
| ATTTGAGAAGTTTGGTGGTT+GGG | 0.430666 | 7.2:+78455944 | None:intergenic |
| TCAAAGGCTGCTGAGAAAAT+GGG | 0.431171 | 7.2:-78454602 | MS.gene43181:CDS |
| AGAGGAGTGTTGGCTGCATC+AGG | 0.432114 | 7.2:-78454088 | MS.gene43181:CDS |
| GAATGGTTCCAAACACAATA+GGG | 0.432754 | 7.2:+78454666 | None:intergenic |
| GATACCAATGGGATTTAAGT+TGG | 0.434398 | 7.2:-78454579 | MS.gene43181:CDS |
| ATTCTTTCTAGCAAACTCAT+TGG | 0.435303 | 7.2:+78454986 | None:intergenic |
| CGGGCGAGGCGAGGGCGGGT+TGG | 0.436090 | 7.2:+78456082 | None:intergenic |
| GTTAGCAAGTACATGCCATT+TGG | 0.441451 | 7.2:-78454160 | MS.gene43181:CDS |
| ATGCTTGAGAAGATTGCTAA+TGG | 0.443947 | 7.2:-78454440 | MS.gene43181:CDS |
| GCTCGGCGTCGGGAGGGAGG+AGG | 0.454095 | 7.2:+78456004 | None:intergenic |
| AGCGACAGCGGGCGAGGCGA+GGG | 0.455777 | 7.2:+78456074 | None:intergenic |
| TGGAAGTTGAGCTCGGCGTC+GGG | 0.458380 | 7.2:+78455994 | None:intergenic |
| GGAGAAGATGCTACCACTGC+TGG | 0.458795 | 7.2:-78455772 | MS.gene43181:CDS |
| GGCAATGAATCTTGCTTCCA+TGG | 0.463585 | 7.2:+78454917 | None:intergenic |
| GAGAATGTTGTTGGCATCAA+AGG | 0.469497 | 7.2:-78454618 | MS.gene43181:CDS |
| GAGGCGAGGGCGGGTTGGAA+GGG | 0.471655 | 7.2:+78456087 | None:intergenic |
| AGCCGGTTTACGTGGAATGC+TGG | 0.481169 | 7.2:-78455725 | MS.gene43181:CDS |
| TGCTAAGGAGAGAATGTTGT+TGG | 0.483046 | 7.2:-78454627 | MS.gene43181:CDS |
| GACTTATTTGAAAGATGCTA+AGG | 0.483282 | 7.2:-78454642 | MS.gene43181:CDS |
| CGTAGGAGCGACAGCGGGCG+AGG | 0.483719 | 7.2:+78456068 | None:intergenic |
| GAGAAAATGGGGATACCAAT+GGG | 0.487127 | 7.2:-78454590 | MS.gene43181:CDS |
| TGGCTGCATCAGGCTTTGAC+AGG | 0.489064 | 7.2:-78454078 | MS.gene43181:CDS |
| ATCTTTCAAATAAGTCTGAA+TGG | 0.490946 | 7.2:+78454649 | None:intergenic |
| CAAGTCCTTTGTACCATACA+AGG | 0.491199 | 7.2:-78454880 | MS.gene43181:CDS |
| AATTCTTGGTGGGATTACTC+TGG | 0.492199 | 7.2:+78456143 | None:intergenic |
| CAATGGTCGACCTCGGTACA+TGG | 0.493989 | 7.2:-78455888 | MS.gene43181:CDS |
| AGGAGGGTTGTTGTCAAAGA+TGG | 0.494333 | 7.2:+78456021 | None:intergenic |
| CTCGGCGTCGGGAGGGAGGA+GGG | 0.497150 | 7.2:+78456005 | None:intergenic |
| GACAGCGGGCGAGGCGAGGG+CGG | 0.499336 | 7.2:+78456077 | None:intergenic |
| ACAGCGGGCGAGGCGAGGGC+GGG | 0.499486 | 7.2:+78456078 | None:intergenic |
| CTGGAAGTTGAGCTCGGCGT+CGG | 0.500549 | 7.2:+78455993 | None:intergenic |
| AAAGAAGAGATTACCGAAGA+TGG | 0.501243 | 7.2:+78455610 | None:intergenic |
| CAGATCGCTTCCTCCATCTT+CGG | 0.508348 | 7.2:-78455623 | MS.gene43181:intron |
| ACAGTCTCCACAGGACCAAA+TGG | 0.512639 | 7.2:+78454145 | None:intergenic |
| AGAGGAGAATAGAGGAGTGT+TGG | 0.512685 | 7.2:-78454098 | MS.gene43181:CDS |
| TCCTTTACGTAACATTGCTA+TGG | 0.513932 | 7.2:-78455833 | MS.gene43181:CDS |
| TAAGTAAAGTAATCAATAGC+AGG | 0.514940 | 7.2:+78454722 | None:intergenic |
| GCTGCAAAAGCACATGAACT+AGG | 0.515207 | 7.2:-78454274 | MS.gene43181:CDS |
| GTAACAGGAAGGAGTTGGTC+AGG | 0.515317 | 7.2:-78453929 | MS.gene43181:intron |
| GAGCGACAGCGGGCGAGGCG+AGG | 0.516279 | 7.2:+78456073 | None:intergenic |
| TGCTACCGCGGTCGAGCCAA+TGG | 0.518289 | 7.2:-78455905 | MS.gene43181:CDS |
| TGGAAAGGTGAACCATAAGA+TGG | 0.519633 | 7.2:-78454248 | MS.gene43181:CDS |
| AGAAGGGCAGAGGAGAATAG+AGG | 0.520398 | 7.2:-78454106 | MS.gene43181:CDS |
| TCTGCCCTTCTCAAGAGGTA+TGG | 0.522489 | 7.2:+78454118 | None:intergenic |
| AGTTGAGCTCGGCGTCGGGA+GGG | 0.523522 | 7.2:+78455998 | None:intergenic |
| GACGTCCTGGAAGTTGAGCT+CGG | 0.525511 | 7.2:+78455987 | None:intergenic |
| GAGAAGATTGCTAATGGTCC+TGG | 0.526190 | 7.2:-78454434 | MS.gene43181:CDS |
| TTGAATGAAGCCGGTTTACG+TGG | 0.536980 | 7.2:-78455733 | MS.gene43181:CDS |
| AAAGCACATGAACTAGGCAT+TGG | 0.541016 | 7.2:-78454268 | MS.gene43181:CDS |
| AAGTTGAGCTCGGCGTCGGG+AGG | 0.542028 | 7.2:+78455997 | None:intergenic |
| TCTTGGTGGGATTACTCTGG+TGG | 0.544261 | 7.2:+78456146 | None:intergenic |
| TGAGCTCGGCGTCGGGAGGG+AGG | 0.546223 | 7.2:+78456001 | None:intergenic |
| TTGGCTCGACCGCGGTAGCA+TGG | 0.546822 | 7.2:+78455908 | None:intergenic |
| AGTTGATTTGAGAAGTTTGG+TGG | 0.547853 | 7.2:+78455939 | None:intergenic |
| CCCTGCATTGCTTAAACCAA+AGG | 0.548005 | 7.2:+78454189 | None:intergenic |
| TCTCCTCTGCCCTTCTCAAG+AGG | 0.548277 | 7.2:+78454113 | None:intergenic |
| AGCAGTGGTAGCATCTTCTC+CGG | 0.551973 | 7.2:+78455774 | None:intergenic |
| CTCTTCCTTGTATGGTACAA+AGG | 0.552313 | 7.2:+78454875 | None:intergenic |
| CTAACCAACTTAAATCCCAT+TGG | 0.556156 | 7.2:+78454575 | None:intergenic |
| GGCTGTGATCGCAATCTCAA+AGG | 0.556621 | 7.2:-78455670 | MS.gene43181:CDS |
| GCCATAGCAATGTTACGTAA+AGG | 0.557815 | 7.2:+78455832 | None:intergenic |
| GAATGAGTGATTTGCTGAGA+TGG | 0.558930 | 7.2:-78454967 | MS.gene43181:CDS |
| TGAGAAAATGGGGATACCAA+TGG | 0.562625 | 7.2:-78454591 | MS.gene43181:CDS |
| ACCTCGGTACATGGATGTTG+AGG | 0.563108 | 7.2:-78455879 | MS.gene43181:CDS |
| ATTGCCGGGTTGAATGAAGC+CGG | 0.569365 | 7.2:-78455742 | MS.gene43181:CDS |
| CCTTTGGTTTAAGCAATGCA+GGG | 0.571154 | 7.2:-78454189 | MS.gene43181:CDS |
| ATACCTCTTGAGAAGGGCAG+AGG | 0.573142 | 7.2:-78454116 | MS.gene43181:CDS |
| TTATGCCATACCTCTTGAGA+AGG | 0.578455 | 7.2:-78454123 | MS.gene43181:CDS |
| CATGTACCGAGGTCGACCAT+TGG | 0.580563 | 7.2:+78455889 | None:intergenic |
| GTTTCCTTAGAATTCTTGGT+GGG | 0.589566 | 7.2:+78456133 | None:intergenic |
| GTCGAGCCAATGGTCGACCT+CGG | 0.591911 | 7.2:-78455895 | MS.gene43181:CDS |
| GTACATGCCATTTGGTCCTG+TGG | 0.593486 | 7.2:-78454152 | MS.gene43181:CDS |
| GATTTGAGAAGTTTGGTGGT+TGG | 0.596318 | 7.2:+78455943 | None:intergenic |
| TGTGTGTAACAGGAAGGAGT+TGG | 0.596944 | 7.2:-78453934 | MS.gene43181:intron |
| CACATTTCTGACAAAGCTCA+AGG | 0.598840 | 7.2:+78454795 | None:intergenic |
| CAAAGGCTGCTGAGAAAATG+GGG | 0.601355 | 7.2:-78454601 | MS.gene43181:CDS |
| GACCGCGGTAGCATGGAGGA+TGG | 0.611857 | 7.2:+78455915 | None:intergenic |
| AGGGTTGTTGTCAAAGATGG+CGG | 0.612502 | 7.2:+78456024 | None:intergenic |
| TGCCATCCTCCATGCTACCG+CGG | 0.616863 | 7.2:-78455917 | MS.gene43181:CDS |
| AGTTTCCTTAGAATTCTTGG+TGG | 0.617238 | 7.2:+78456132 | None:intergenic |
| TGGTCTAAAATATTAGACGT+AGG | 0.627525 | 7.2:+78456051 | None:intergenic |
| AAGCGATCTGCTGACATCAA+CGG | 0.628709 | 7.2:+78455636 | None:intergenic |
| ATTAGACGTAGGAGCGACAG+CGG | 0.629436 | 7.2:+78456062 | None:intergenic |
| GTCGACCATTGGCTCGACCG+CGG | 0.630016 | 7.2:+78455900 | None:intergenic |
| GAAGAGATTACCGAAGATGG+AGG | 0.632295 | 7.2:+78455613 | None:intergenic |
| TTAGACGTAGGAGCGACAGC+GGG | 0.641379 | 7.2:+78456063 | None:intergenic |
| GCTTTGACAGGCAATTGATG+AGG | 0.647646 | 7.2:-78454066 | MS.gene43181:intron |
| TCCATGGTAAAACAAATGAA+GGG | 0.647799 | 7.2:+78454933 | None:intergenic |
| ACATGAACTAGGCATTGGAA+AGG | 0.653123 | 7.2:-78454263 | MS.gene43181:CDS |
| TATGGCATAACAGTCTCCAC+AGG | 0.658251 | 7.2:+78454136 | None:intergenic |
| TATGCCATACCTCTTGAGAA+GGG | 0.660273 | 7.2:-78454122 | MS.gene43181:CDS |
| TCTGCTATTATGCATAACAA+AGG | 0.660959 | 7.2:-78454695 | MS.gene43181:CDS |
| GAAGATGCTCATGATAACGC+TGG | 0.669461 | 7.2:-78455691 | MS.gene43181:CDS |
| AAGATTGCTAATGGTCCTGG+TGG | 0.669644 | 7.2:-78454431 | MS.gene43181:CDS |
| GTTGCAAGAACAACTCCACC+AGG | 0.681012 | 7.2:+78454416 | None:intergenic |
| ACAACTATATGGAATGTCTG+AGG | 0.702468 | 7.2:-78454218 | MS.gene43181:CDS |
| GCTCGACCGCGGTAGCATGG+AGG | 0.710481 | 7.2:+78455911 | None:intergenic |
| ACCTCAACATCCATGTACCG+AGG | 0.713651 | 7.2:+78455878 | None:intergenic |
| TAAACCGGCTTCATTCAACC+CGG | 0.724383 | 7.2:+78455738 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTAATGTTGTTTTGTAT+AGG | - | chr7.2:78455748-78455767 | MS.gene43181:CDS | 15.0% |
| !! | AAAAATAGGTTATGAATTTG+AGG | - | chr7.2:78454927-78454946 | MS.gene43181:CDS | 20.0% |
| !! | AAAATAGGTTATGAATTTGA+GGG | - | chr7.2:78454928-78454947 | MS.gene43181:CDS | 20.0% |
| !! | ATATTAATGTATGCAATTGA+GGG | - | chr7.2:78455711-78455730 | MS.gene43181:CDS | 20.0% |
| !! | TATATTAATGTATGCAATTG+AGG | - | chr7.2:78455710-78455729 | MS.gene43181:CDS | 20.0% |
| !!! | AACAAACAAACAATTGTTTT+TGG | - | chr7.2:78454813-78454832 | MS.gene43181:CDS | 20.0% |
| !!! | GTTTTCTTTTTTTGCTTTTT+TGG | - | chr7.2:78454497-78454516 | MS.gene43181:CDS | 20.0% |
| !!! | TTTAAATTTTTCCGTTGTAT+AGG | - | chr7.2:78455011-78455030 | MS.gene43181:CDS | 20.0% |
| ! | AAATAGGTTATGAATTTGAG+GGG | - | chr7.2:78454929-78454948 | MS.gene43181:CDS | 25.0% |
| ! | AATGAAAAGAAAACTAAGCA+TGG | - | chr7.2:78454715-78454734 | MS.gene43181:CDS | 25.0% |
| ! | AATGTTACGTAAAGGATTAT+TGG | + | chr7.2:78454218-78454237 | None:intergenic | 25.0% |
| ! | ACAAAAATGATCGAAAAAAG+TGG | + | chr7.2:78454260-78454279 | None:intergenic | 25.0% |
| ! | ATCTTTCAAATAAGTCTGAA+TGG | + | chr7.2:78455409-78455428 | None:intergenic | 25.0% |
| ! | TAACTAGGTTAAACATGAAA+TGG | + | chr7.2:78456039-78456058 | None:intergenic | 25.0% |
| ! | TAAGTAAAGTAATCAATAGC+AGG | + | chr7.2:78455336-78455355 | None:intergenic | 25.0% |
| ! | TATGTCTAGTGAAAGAAAAT+TGG | - | chr7.2:78455512-78455531 | MS.gene43181:intron | 25.0% |
| ! | TATTAATGTATGCAATTGAG+GGG | - | chr7.2:78455712-78455731 | MS.gene43181:CDS | 25.0% |
| ! | TCCAATTCATAACACTATTA+AGG | - | chr7.2:78455557-78455576 | MS.gene43181:intron | 25.0% |
| ! | TCCTTAATAGTGTTATGAAT+TGG | + | chr7.2:78455561-78455580 | None:intergenic | 25.0% |
| !! | ATCAACCAATAATGGAATAT+TGG | + | chr7.2:78455292-78455311 | None:intergenic | 25.0% |
| !! | TAGTTTTCTTTTCATTCCTT+AGG | + | chr7.2:78454711-78454730 | None:intergenic | 25.0% |
| !!! | CTTTTTTTGCTTTTTTGGTT+CGG | - | chr7.2:78454502-78454521 | MS.gene43181:CDS | 25.0% |
| !!! | GTTGTTTTGTATAGGAAAAT+TGG | - | chr7.2:78455756-78455775 | MS.gene43181:CDS | 25.0% |
| AAATCAATCAAAGCATGGAT+TGG | - | chr7.2:78454765-78454784 | MS.gene43181:CDS | 30.0% | |
| AGAAAAAAAACTGTGGTTGA+TGG | - | chr7.2:78454867-78454886 | MS.gene43181:CDS | 30.0% | |
| AGTAGTGCTGTATTAAATTG+CGG | + | chr7.2:78454632-78454651 | None:intergenic | 30.0% | |
| ATGGAATTTGCACAACTATA+TGG | - | chr7.2:78455826-78455845 | MS.gene43181:CDS | 30.0% | |
| CGGTTATTCTCAATTGAATT+TGG | + | chr7.2:78454573-78454592 | None:intergenic | 30.0% | |
| GACTCATGAAATGTAACATT+TGG | - | chr7.2:78456068-78456087 | MS.gene43181:CDS | 30.0% | |
| GACTTATTTGAAAGATGCTA+AGG | - | chr7.2:78455413-78455432 | MS.gene43181:intron | 30.0% | |
| TCATGAAATCAATCAAAGCA+TGG | - | chr7.2:78454760-78454779 | MS.gene43181:CDS | 30.0% | |
| TCCATGGTAAAACAAATGAA+GGG | + | chr7.2:78455125-78455144 | None:intergenic | 30.0% | |
| TCTGCTATTATGCATAACAA+AGG | - | chr7.2:78455360-78455379 | MS.gene43181:intron | 30.0% | |
| TGAGTCACAAACAATTAACT+AGG | + | chr7.2:78456054-78456073 | None:intergenic | 30.0% | |
| TTCCATGGTAAAACAAATGA+AGG | + | chr7.2:78455126-78455145 | None:intergenic | 30.0% | |
| ! | ATTCTTTCTAGCAAACTCAT+TGG | + | chr7.2:78455072-78455091 | None:intergenic | 30.0% |
| ! | ATTGAGAATAACCGTTTTCA+TGG | - | chr7.2:78454579-78454598 | MS.gene43181:CDS | 30.0% |
| ! | TGGTCTAAAATATTAGACGT+AGG | + | chr7.2:78454007-78454026 | None:intergenic | 30.0% |
| !! | TTTTTCGATCATTTTTGTGC+CGG | - | chr7.2:78454262-78454281 | MS.gene43181:CDS | 30.0% |
| !!! | GAATTTGTTTTGTGTGTAAC+AGG | - | chr7.2:78456111-78456130 | MS.gene43181:CDS | 30.0% |
| AAAGAAGAGATTACCGAAGA+TGG | + | chr7.2:78454448-78454467 | None:intergenic | 35.0% | |
| ACAACTATATGGAATGTCTG+AGG | - | chr7.2:78455837-78455856 | MS.gene43181:CDS | 35.0% | |
| ACCACACAGAAAAAAAACTG+TGG | - | chr7.2:78454860-78454879 | MS.gene43181:CDS | 35.0% | |
| AGAGATGCAATCTGCTTTAA+TGG | - | chr7.2:78454545-78454564 | MS.gene43181:CDS | 35.0% | |
| AGTTTCCTTAGAATTCTTGG+TGG | + | chr7.2:78453926-78453945 | None:intergenic | 35.0% | |
| ATGCTTGAGAAGATTGCTAA+TGG | - | chr7.2:78455615-78455634 | MS.gene43181:intron | 35.0% | |
| CAATGGAAATGGAATGGAAT+TGG | - | chr7.2:78454790-78454809 | MS.gene43181:CDS | 35.0% | |
| CACAAAGCTTACCTATACAA+CGG | + | chr7.2:78455025-78455044 | None:intergenic | 35.0% | |
| CTAACCAACTTAAATCCCAT+TGG | + | chr7.2:78455483-78455502 | None:intergenic | 35.0% | |
| GAAAACTAAGCATGGAACAA+TGG | - | chr7.2:78454723-78454742 | MS.gene43181:CDS | 35.0% | |
| GAATGGTTCCAAACACAATA+GGG | + | chr7.2:78455392-78455411 | None:intergenic | 35.0% | |
| GATACCAATGGGATTTAAGT+TGG | - | chr7.2:78455476-78455495 | MS.gene43181:intron | 35.0% | |
| GCAACTCATAACATTGAATC+AGG | - | chr7.2:78455657-78455676 | MS.gene43181:CDS | 35.0% | |
| GCAAGCCAATATTCCATTAT+TGG | - | chr7.2:78455284-78455303 | MS.gene43181:intron | 35.0% | |
| GTTGTGCAAATTCCATCTTA+TGG | + | chr7.2:78455822-78455841 | None:intergenic | 35.0% | |
| GTTTCCTTAGAATTCTTGGT+GGG | + | chr7.2:78453925-78453944 | None:intergenic | 35.0% | |
| TAAGCATGGAACAATGGAAT+TGG | - | chr7.2:78454729-78454748 | MS.gene43181:CDS | 35.0% | |
| TAATCCCACCAAGAATTCTA+AGG | - | chr7.2:78453918-78453937 | MS.gene43181:CDS | 35.0% | |
| TCCTTTACGTAACATTGCTA+TGG | - | chr7.2:78454222-78454241 | MS.gene43181:CDS | 35.0% | |
| TGAATGGTTCCAAACACAAT+AGG | + | chr7.2:78455393-78455412 | None:intergenic | 35.0% | |
| TGTTCAGCATCAACCAATAA+TGG | + | chr7.2:78455300-78455319 | None:intergenic | 35.0% | |
| TTGGAACAATGGAAATGGAA+TGG | - | chr7.2:78454784-78454803 | MS.gene43181:CDS | 35.0% | |
| ! | AAGAAAATTGGCTGCTGATT+TGG | - | chr7.2:78455524-78455543 | MS.gene43181:intron | 35.0% |
| ! | ATTTGAGAAGTTTGGTGGTT+GGG | + | chr7.2:78454114-78454133 | None:intergenic | 35.0% |
| !! | AGAAAATTGGCTGCTGATTT+GGG | - | chr7.2:78455525-78455544 | MS.gene43181:intron | 35.0% |
| !! | AGTTGATTTGAGAAGTTTGG+TGG | + | chr7.2:78454119-78454138 | None:intergenic | 35.0% |
| !! | ATGGATTGGAACAATGGAAA+TGG | - | chr7.2:78454779-78454798 | MS.gene43181:CDS | 35.0% |
| !! | ATGGGATTTAAGTTGGTTAG+AGG | - | chr7.2:78455483-78455502 | MS.gene43181:intron | 35.0% |
| !! | TTGTTTTGTGTGTAACAGGA+AGG | - | chr7.2:78456115-78456134 | MS.gene43181:CDS | 35.0% |
| !!! | ACCACAGTTTTTTTTCTGTG+TGG | + | chr7.2:78454864-78454883 | None:intergenic | 35.0% |
| !!! | ACCCTTCATTTGTTTTACCA+TGG | - | chr7.2:78455121-78455140 | MS.gene43181:intron | 35.0% |
| AAAGCACATGAACTAGGCAT+TGG | - | chr7.2:78455787-78455806 | MS.gene43181:CDS | 40.0% | |
| AATTCTTGGTGGGATTACTC+TGG | + | chr7.2:78453915-78453934 | None:intergenic | 40.0% | |
| AGAACTCAGCACCATGAAAA+CGG | + | chr7.2:78454593-78454612 | None:intergenic | 40.0% | |
| ATCAAAGGCTGCTGAGAAAA+TGG | - | chr7.2:78455452-78455471 | MS.gene43181:intron | 40.0% | |
| CAAGTCCTTTGTACCATACA+AGG | - | chr7.2:78455175-78455194 | MS.gene43181:intron | 40.0% | |
| CACATTTCTGACAAAGCTCA+AGG | + | chr7.2:78455263-78455282 | None:intergenic | 40.0% | |
| CGGAGTTTCCTTAGAATTCT+TGG | + | chr7.2:78453929-78453948 | None:intergenic | 40.0% | |
| CTCTCTTCTTCTGCTGTTAA+TGG | + | chr7.2:78455213-78455232 | None:intergenic | 40.0% | |
| CTCTTCCTTGTATGGTACAA+AGG | + | chr7.2:78455183-78455202 | None:intergenic | 40.0% | |
| GAGAAAATGGGGATACCAAT+GGG | - | chr7.2:78455465-78455484 | MS.gene43181:intron | 40.0% | |
| GAGAATGTTGTTGGCATCAA+AGG | - | chr7.2:78455437-78455456 | MS.gene43181:intron | 40.0% | |
| GCCATAGCAATGTTACGTAA+AGG | + | chr7.2:78454226-78454245 | None:intergenic | 40.0% | |
| GGACTTGACTCAGAGAAAAT+TGG | + | chr7.2:78455162-78455181 | None:intergenic | 40.0% | |
| GGTGAAAACCCTATTGTGTT+TGG | - | chr7.2:78455381-78455400 | MS.gene43181:intron | 40.0% | |
| GTTAGCAAGTACATGCCATT+TGG | - | chr7.2:78455895-78455914 | MS.gene43181:CDS | 40.0% | |
| TATGCCATACCTCTTGAGAA+GGG | - | chr7.2:78455933-78455952 | MS.gene43181:CDS | 40.0% | |
| TCAAAGGCTGCTGAGAAAAT+GGG | - | chr7.2:78455453-78455472 | MS.gene43181:intron | 40.0% | |
| TGAGAAAATGGGGATACCAA+TGG | - | chr7.2:78455464-78455483 | MS.gene43181:intron | 40.0% | |
| TGCTAAGGAGAGAATGTTGT+TGG | - | chr7.2:78455428-78455447 | MS.gene43181:intron | 40.0% | |
| TGGAAAGGTGAACCATAAGA+TGG | - | chr7.2:78455807-78455826 | MS.gene43181:CDS | 40.0% | |
| TTATGCCATACCTCTTGAGA+AGG | - | chr7.2:78455932-78455951 | MS.gene43181:CDS | 40.0% | |
| ! | CCTTTGGTTTAAGCAATGCA+GGG | - | chr7.2:78455866-78455885 | MS.gene43181:CDS | 40.0% |
| ! | CTTTTCATTCCTTAGGAGCA+CGG | + | chr7.2:78454704-78454723 | None:intergenic | 40.0% |
| ! | GATTTGAGAAGTTTGGTGGT+TGG | + | chr7.2:78454115-78454134 | None:intergenic | 40.0% |
| ! | TCCTTTGGTTTAAGCAATGC+AGG | - | chr7.2:78455865-78455884 | MS.gene43181:CDS | 40.0% |
| !! | AAAAGAGTTTTTCGACGTCC+TGG | + | chr7.2:78454084-78454103 | None:intergenic | 40.0% |
| !! | ACATGAACTAGGCATTGGAA+AGG | - | chr7.2:78455792-78455811 | MS.gene43181:CDS | 40.0% |
| !! | ACTGCTGGAAAAAGTATTGC+CGG | - | chr7.2:78454298-78454317 | MS.gene43181:intron | 40.0% |
| !! | CAAAGCATGGATTGGAACAA+TGG | - | chr7.2:78454773-78454792 | MS.gene43181:CDS | 40.0% |
| !! | GAATGAGTGATTTGCTGAGA+TGG | - | chr7.2:78455088-78455107 | MS.gene43181:intron | 40.0% |
| !! | GGCAGTTGATTTGAGAAGTT+TGG | + | chr7.2:78454122-78454141 | None:intergenic | 40.0% |
| !! | TTACGTGGAATGCTGGTTTA+CGG | - | chr7.2:78454337-78454356 | MS.gene43181:intron | 40.0% |
| !! | TTGTCAAAGATGGCGGTTTT+TGG | + | chr7.2:78454027-78454046 | None:intergenic | 40.0% |
| AACCAGCATTCCACGTAAAC+CGG | + | chr7.2:78454335-78454354 | None:intergenic | 45.0% | |
| AAGATTGCTAATGGTCCTGG+TGG | - | chr7.2:78455624-78455643 | MS.gene43181:CDS | 45.0% | |
| AAGCGATCTGCTGACATCAA+CGG | + | chr7.2:78454422-78454441 | None:intergenic | 45.0% | |
| AGGAGGGTTGTTGTCAAAGA+TGG | + | chr7.2:78454037-78454056 | None:intergenic | 45.0% | |
| AGGGTTGTTGTCAAAGATGG+CGG | + | chr7.2:78454034-78454053 | None:intergenic | 45.0% | |
| CAAAGGCTGCTGAGAAAATG+GGG | - | chr7.2:78455454-78455473 | MS.gene43181:intron | 45.0% | |
| CCCTGCATTGCTTAAACCAA+AGG | + | chr7.2:78455869-78455888 | None:intergenic | 45.0% | |
| GAAGAGATTACCGAAGATGG+AGG | + | chr7.2:78454445-78454464 | None:intergenic | 45.0% | |
| GAGAAGATTGCTAATGGTCC+TGG | - | chr7.2:78455621-78455640 | MS.gene43181:intron | 45.0% | |
| GCTTTGACAGGCAATTGATG+AGG | - | chr7.2:78455989-78456008 | MS.gene43181:CDS | 45.0% | |
| GGCAATGAATCTTGCTTCCA+TGG | + | chr7.2:78455141-78455160 | None:intergenic | 45.0% | |
| TATGGCATAACAGTCTCCAC+AGG | + | chr7.2:78455922-78455941 | None:intergenic | 45.0% | |
| TCTTCTGCTGTTAATGGCTC+TGG | + | chr7.2:78455207-78455226 | None:intergenic | 45.0% | |
| TGTGTGTAACAGGAAGGAGT+TGG | - | chr7.2:78456121-78456140 | MS.gene43181:CDS | 45.0% | |
| ! | AGAGGAGAATAGAGGAGTGT+TGG | - | chr7.2:78455957-78455976 | MS.gene43181:CDS | 45.0% |
| ! | ATGTCTGAGGCACTATCCTT+TGG | - | chr7.2:78455850-78455869 | MS.gene43181:CDS | 45.0% |
| ! | GAAGATGCTCATGATAACGC+TGG | - | chr7.2:78454364-78454383 | MS.gene43181:intron | 45.0% |
| ! | GCTGCAAAAGCACATGAACT+AGG | - | chr7.2:78455781-78455800 | MS.gene43181:CDS | 45.0% |
| ! | TAAACCGGCTTCATTCAACC+CGG | + | chr7.2:78454320-78454339 | None:intergenic | 45.0% |
| ! | TTGAATGAAGCCGGTTTACG+TGG | - | chr7.2:78454322-78454341 | MS.gene43181:intron | 45.0% |
| !! | CTGCTGGAAAAAGTATTGCC+GGG | - | chr7.2:78454299-78454318 | MS.gene43181:intron | 45.0% |
| !!! | GGCAATACTTTTTCCAGCAG+TGG | + | chr7.2:78454299-78454318 | None:intergenic | 45.0% |
| !!! | GTTTTGTGGCGGTGTTGTAT+CGG | + | chr7.2:78453949-78453968 | None:intergenic | 45.0% |
| !! | AAATTATGTAAAAAAAAAAT+AGG | - | chr7.2:78454913-78454932 | MS.gene43181:CDS | 5.0% |
| ACAGTCTCCACAGGACCAAA+TGG | + | chr7.2:78455913-78455932 | None:intergenic | 50.0% | |
| ACCTCAACATCCATGTACCG+AGG | + | chr7.2:78454180-78454199 | None:intergenic | 50.0% | |
| ACCTCGGTACATGGATGTTG+AGG | - | chr7.2:78454176-78454195 | MS.gene43181:CDS | 50.0% | |
| AGAAGGGCAGAGGAGAATAG+AGG | - | chr7.2:78455949-78455968 | MS.gene43181:CDS | 50.0% | |
| AGCAGTGGTAGCATCTTCTC+CGG | + | chr7.2:78454284-78454303 | None:intergenic | 50.0% | |
| ATACCTCTTGAGAAGGGCAG+AGG | - | chr7.2:78455939-78455958 | MS.gene43181:CDS | 50.0% | |
| ATCGAAAAAAGTGGCGCGTG+TGG | + | chr7.2:78454251-78454270 | None:intergenic | 50.0% | |
| ATTAGACGTAGGAGCGACAG+CGG | + | chr7.2:78453996-78454015 | None:intergenic | 50.0% | |
| CAGATCGCTTCCTCCATCTT+CGG | - | chr7.2:78454432-78454451 | MS.gene43181:CDS | 50.0% | |
| GCTCTGGTCTCTTCCTTGTA+TGG | + | chr7.2:78455191-78455210 | None:intergenic | 50.0% | |
| GGCTGTGATCGCAATCTCAA+AGG | - | chr7.2:78454385-78454404 | MS.gene43181:intron | 50.0% | |
| GTTGCAAGAACAACTCCACC+AGG | + | chr7.2:78455642-78455661 | None:intergenic | 50.0% | |
| TCTGCCCTTCTCAAGAGGTA+TGG | + | chr7.2:78455940-78455959 | None:intergenic | 50.0% | |
| TCTTGGTGGGATTACTCTGG+TGG | + | chr7.2:78453912-78453931 | None:intergenic | 50.0% | |
| TGCTGCTGATGTGACGTATC+TGG | - | chr7.2:78454663-78454682 | MS.gene43181:CDS | 50.0% | |
| TGTCTGATTCCGTGCTCCTA+AGG | - | chr7.2:78454692-78454711 | MS.gene43181:CDS | 50.0% | |
| ! | ATTGCCGGGTTGAATGAAGC+CGG | - | chr7.2:78454313-78454332 | MS.gene43181:intron | 50.0% |
| ! | GTAACAGGAAGGAGTTGGTC+AGG | - | chr7.2:78456126-78456145 | MS.gene43181:CDS | 50.0% |
| ! | GTACATGCCATTTGGTCCTG+TGG | - | chr7.2:78455903-78455922 | MS.gene43181:CDS | 50.0% |
| ! | TAGGAGCACGGAATCAGACA+CGG | + | chr7.2:78454692-78454711 | None:intergenic | 50.0% |
| CAATGGTCGACCTCGGTACA+TGG | - | chr7.2:78454167-78454186 | MS.gene43181:CDS | 55.0% | |
| CATGTACCGAGGTCGACCAT+TGG | + | chr7.2:78454169-78454188 | None:intergenic | 55.0% | |
| GACGTCCTGGAAGTTGAGCT+CGG | + | chr7.2:78454071-78454090 | None:intergenic | 55.0% | |
| GGAGAAGATGCTACCACTGC+TGG | - | chr7.2:78454283-78454302 | MS.gene43181:CDS | 55.0% | |
| TCTCCTCTGCCCTTCTCAAG+AGG | + | chr7.2:78455945-78455964 | None:intergenic | 55.0% | |
| TTAGACGTAGGAGCGACAGC+GGG | + | chr7.2:78453995-78454014 | None:intergenic | 55.0% | |
| ! | AGCCGGTTTACGTGGAATGC+TGG | - | chr7.2:78454330-78454349 | MS.gene43181:intron | 55.0% |
| ! | TGGCTGCATCAGGCTTTGAC+AGG | - | chr7.2:78455977-78455996 | MS.gene43181:CDS | 55.0% |
| !! | AGAGGAGTGTTGGCTGCATC+AGG | - | chr7.2:78455967-78455986 | MS.gene43181:CDS | 55.0% |
| !! | GGGTTGGAAGGGTTTTGTGG+CGG | + | chr7.2:78453960-78453979 | None:intergenic | 55.0% |
| CTGGAAGTTGAGCTCGGCGT+CGG | + | chr7.2:78454065-78454084 | None:intergenic | 60.0% | |
| GTCGAGCCAATGGTCGACCT+CGG | - | chr7.2:78454160-78454179 | MS.gene43181:CDS | 60.0% | |
| TGCCATCCTCCATGCTACCG+CGG | - | chr7.2:78454138-78454157 | MS.gene43181:CDS | 60.0% | |
| TGGAAGTTGAGCTCGGCGTC+GGG | + | chr7.2:78454064-78454083 | None:intergenic | 60.0% | |
| !!! | GGCGGGTTGGAAGGGTTTTG+TGG | + | chr7.2:78453963-78453982 | None:intergenic | 60.0% |
| CGACGCCGAGCTCAACTTCC+AGG | - | chr7.2:78454063-78454082 | MS.gene43181:intron | 65.0% | |
| GACCGCGGTAGCATGGAGGA+TGG | + | chr7.2:78454143-78454162 | None:intergenic | 65.0% | |
| TGCTACCGCGGTCGAGCCAA+TGG | - | chr7.2:78454150-78454169 | MS.gene43181:CDS | 65.0% | |
| ! | AAGTTGAGCTCGGCGTCGGG+AGG | + | chr7.2:78454061-78454080 | None:intergenic | 65.0% |
| ! | AGTTGAGCTCGGCGTCGGGA+GGG | + | chr7.2:78454060-78454079 | None:intergenic | 65.0% |
| ! | TTGGCTCGACCGCGGTAGCA+TGG | + | chr7.2:78454150-78454169 | None:intergenic | 65.0% |
| !! | GTCGACCATTGGCTCGACCG+CGG | + | chr7.2:78454158-78454177 | None:intergenic | 65.0% |
| GCTCGACCGCGGTAGCATGG+AGG | + | chr7.2:78454147-78454166 | None:intergenic | 70.0% | |
| !! | GAGGCGAGGGCGGGTTGGAA+GGG | + | chr7.2:78453971-78453990 | None:intergenic | 70.0% |
| AGCGACAGCGGGCGAGGCGA+GGG | + | chr7.2:78453984-78454003 | None:intergenic | 75.0% | |
| CGTAGGAGCGACAGCGGGCG+AGG | + | chr7.2:78453990-78454009 | None:intergenic | 75.0% | |
| ! | CTCGGCGTCGGGAGGGAGGA+GGG | + | chr7.2:78454053-78454072 | None:intergenic | 75.0% |
| ! | TGAGCTCGGCGTCGGGAGGG+AGG | + | chr7.2:78454057-78454076 | None:intergenic | 75.0% |
| !! | CGAGGCGAGGGCGGGTTGGA+AGG | + | chr7.2:78453972-78453991 | None:intergenic | 75.0% |
| ! | ACAGCGGGCGAGGCGAGGGC+GGG | + | chr7.2:78453980-78453999 | None:intergenic | 80.0% |
| ! | GACAGCGGGCGAGGCGAGGG+CGG | + | chr7.2:78453981-78454000 | None:intergenic | 80.0% |
| ! | GAGCGACAGCGGGCGAGGCG+AGG | + | chr7.2:78453985-78454004 | None:intergenic | 80.0% |
| !! | GCTCGGCGTCGGGAGGGAGG+AGG | + | chr7.2:78454054-78454073 | None:intergenic | 80.0% |
| ! | CGGGCGAGGCGAGGGCGGGT+TGG | + | chr7.2:78453976-78453995 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 78453905 | 78456172 | 78453905 | ID=MS.gene43181 |
| chr7.2 | mRNA | 78453905 | 78456172 | 78453905 | ID=MS.gene43181.t1;Parent=MS.gene43181 |
| chr7.2 | exon | 78455624 | 78456172 | 78455624 | ID=MS.gene43181.t1.exon1;Parent=MS.gene43181.t1 |
| chr7.2 | CDS | 78455624 | 78456172 | 78455624 | ID=cds.MS.gene43181.t1;Parent=MS.gene43181.t1 |
| chr7.2 | exon | 78454399 | 78455044 | 78454399 | ID=MS.gene43181.t1.exon2;Parent=MS.gene43181.t1 |
| chr7.2 | CDS | 78454399 | 78455044 | 78454399 | ID=cds.MS.gene43181.t1;Parent=MS.gene43181.t1 |
| chr7.2 | exon | 78454067 | 78454307 | 78454067 | ID=MS.gene43181.t1.exon3;Parent=MS.gene43181.t1 |
| chr7.2 | CDS | 78454067 | 78454307 | 78454067 | ID=cds.MS.gene43181.t1;Parent=MS.gene43181.t1 |
| chr7.2 | exon | 78453905 | 78453944 | 78453905 | ID=MS.gene43181.t1.exon4;Parent=MS.gene43181.t1 |
| chr7.2 | CDS | 78453905 | 78453944 | 78453905 | ID=cds.MS.gene43181.t1;Parent=MS.gene43181.t1 |
| Gene Sequence |
| Protein sequence |
