AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene43208

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43208.t1 MTR_7g018380 99.620 526 2 0 1 526 190 715 0.0 1079
MS.gene43208.t1 MTR_8g075040 98.289 526 7 1 1 526 243 766 0.0 1062
MS.gene43208.t1 MTR_1g066620 92.030 527 40 2 1 526 36 561 0.0 994
MS.gene43208.t1 MTR_3g080970 43.269 520 263 10 2 513 212 707 1.35e-140 422
MS.gene43208.t1 MTR_2g095440 41.602 512 266 7 2 513 41 519 1.21e-138 411
MS.gene43208.t1 MTR_2g095440 41.602 512 266 7 2 513 47 525 2.01e-138 410
MS.gene43208.t1 MTR_2g095440 41.602 512 266 7 2 513 101 579 7.05e-138 411
MS.gene43208.t1 MTR_4g057795 41.165 515 270 6 2 516 101 582 3.79e-134 402
MS.gene43208.t1 MTR_4g057795 41.270 504 263 7 13 516 2 472 1.04e-131 392
MS.gene43208.t1 MTR_3g095010 29.541 545 333 14 2 526 143 656 1.04e-54 196
MS.gene43208.t1 MTR_7g102070 28.814 236 127 8 293 502 420 640 3.69e-14 76.3
MS.gene43208.t1 MTR_1g063170 30.332 211 112 7 293 477 393 594 3.94e-14 76.3
MS.gene43208.t1 MTR_4g124050 29.237 236 105 9 304 502 1055 1265 8.26e-14 75.1
MS.gene43208.t1 MTR_5g029750 27.632 228 128 9 299 502 989 1203 2.21e-13 73.6
MS.gene43208.t1 MTR_3g107800 29.661 236 104 9 304 502 1031 1241 2.43e-13 73.6
MS.gene43208.t1 MTR_6g011680 31.441 229 118 10 299 502 1008 1222 3.00e-13 73.2
MS.gene43208.t1 MTR_8g022270 27.232 224 134 7 299 502 598 812 3.14e-13 73.2
MS.gene43208.t1 MTR_3g093430 30.213 235 113 9 299 502 364 578 2.97e-12 70.1
MS.gene43208.t1 MTR_7g079540 36.646 161 78 6 316 454 101 259 1.72e-11 65.9
MS.gene43208.t1 MTR_7g033710 33.714 175 98 7 299 457 425 597 2.53e-11 66.6
MS.gene43208.t1 MTR_7g079540 36.646 161 78 6 316 454 101 259 2.99e-11 65.5
MS.gene43208.t1 MTR_4g081190 26.570 207 113 7 299 477 343 538 3.93e-11 66.6
MS.gene43208.t1 MTR_3g086430 27.556 225 132 8 299 502 1001 1215 6.83e-11 65.9
MS.gene43208.t1 MTR_6g078080 28.085 235 119 8 299 502 1021 1236 9.86e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43208.t1 AT3G54540 84.820 527 77 3 1 526 199 723 0.0 914
MS.gene43208.t1 AT3G54540 84.820 527 77 3 1 526 199 723 0.0 914
MS.gene43208.t1 AT1G64550 43.077 520 265 9 2 513 212 708 1.69e-139 419
MS.gene43208.t1 AT5G60790 41.445 526 271 8 2 526 106 595 4.68e-135 404
MS.gene43208.t1 AT5G64840 29.580 524 326 11 2 512 135 628 2.27e-57 203
MS.gene43208.t1 AT5G09930 30.344 524 322 14 2 512 121 614 1.98e-54 195
MS.gene43208.t1 AT3G28390 31.718 227 112 10 304 502 985 1196 2.52e-14 76.6
MS.gene43208.t1 AT2G36910 30.097 206 109 7 298 477 367 563 8.56e-14 75.1
MS.gene43208.t1 AT3G28345 30.734 218 125 8 292 487 988 1201 9.23e-14 75.1
MS.gene43208.t1 AT2G47000 29.344 259 117 10 299 521 1042 1270 1.67e-12 70.9
MS.gene43208.t1 AT2G47000 29.344 259 117 10 299 521 1042 1270 1.67e-12 70.9
MS.gene43208.t1 AT2G47000 29.344 259 117 10 299 521 1042 1270 1.67e-12 70.9
MS.gene43208.t1 AT3G28860 31.364 220 120 9 304 502 1015 1224 2.08e-12 70.5
MS.gene43208.t1 AT3G28860 27.313 227 130 7 299 502 365 579 1.17e-11 68.2
MS.gene43208.t1 AT1G70610 31.792 173 104 4 299 457 455 627 2.65e-12 70.1
MS.gene43208.t1 AT1G70610 31.792 173 104 4 299 457 274 446 2.82e-12 69.3
MS.gene43208.t1 AT1G10680 26.754 228 130 9 299 502 982 1196 3.65e-12 69.7
MS.gene43208.t1 AT4G25960 28.431 204 113 8 299 477 1030 1225 6.36e-12 68.9
MS.gene43208.t1 AT4G01830 28.444 225 132 8 299 502 751 967 6.83e-12 68.9
MS.gene43208.t1 AT3G62150 27.917 240 113 9 299 502 1052 1267 8.00e-12 68.6
MS.gene43208.t1 AT3G62150 27.917 240 113 9 299 502 1052 1267 8.00e-12 68.6
MS.gene43208.t1 AT3G62150 27.917 240 113 9 299 502 1052 1267 8.00e-12 68.6
MS.gene43208.t1 AT3G28380 28.571 217 117 8 299 487 995 1201 8.70e-12 68.6
MS.gene43208.t1 AT4G01830 28.444 225 132 8 299 502 985 1201 9.30e-12 68.6
MS.gene43208.t1 AT4G18050 28.070 228 118 8 304 502 998 1208 2.41e-11 67.0
MS.gene43208.t1 AT4G18050 28.070 228 118 8 304 502 1008 1218 2.46e-11 67.0
MS.gene43208.t1 AT3G28360 28.866 291 159 14 243 501 928 1202 2.83e-11 67.0
MS.gene43208.t1 AT1G28010 27.551 196 115 6 304 477 1011 1201 5.25e-11 66.2
MS.gene43208.t1 AT5G52860 35.758 165 86 7 308 457 35 194 8.54e-11 65.1

Find 125 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGCAAAACTTGGTAAATA+TGG 0.195660 7.2:+79379218 MS.gene43208:CDS
TGTTGATGTTGGTATTGATA+TGG 0.277196 7.2:+79378965 MS.gene43208:CDS
ATGAAGAACGGAGTCAAATA+TGG 0.285206 7.2:+79379474 MS.gene43208:CDS
ACTTGTGTGGTACCTCTACT+TGG 0.330518 7.2:-79378824 None:intergenic
TAAGAATATTGATGTCCTTC+TGG 0.338734 7.2:+79378065 MS.gene43208:CDS
GTCTAAAATCCTCTCGGTTT+GGG 0.344431 7.2:-79378935 None:intergenic
ATCTTGTTGAGCCTTGTTCC+CGG 0.359673 7.2:-79378715 None:intergenic
GTTGCCATTGTTGGGCCTAA+TGG 0.366354 7.2:+79378996 MS.gene43208:CDS
GTTGATGTTGGTATTGATAT+GGG 0.367817 7.2:+79378966 MS.gene43208:CDS
GAATCTTCTAGCTGGTGATT+TGG 0.379502 7.2:+79379040 MS.gene43208:CDS
TTGTAATCCTCAAATGTTCC+AGG 0.380069 7.2:-79379527 None:intergenic
TTGAAAGCAGCTAGAAGAAC+CGG 0.393435 7.2:+79378696 MS.gene43208:CDS
GGGACTCGTGTTGCCATTGT+TGG 0.395294 7.2:+79378987 MS.gene43208:CDS
TGCATATCCAAATGATTTGT+GGG 0.395419 7.2:-79379356 None:intergenic
AGATGAACCCACAAATCATT+TGG 0.396989 7.2:+79379349 MS.gene43208:CDS
GAGGGCTGTTCTGTGGTTAG+AGG 0.402715 7.2:+79378476 MS.gene43208:CDS
CACTATTGAAGCTTCTTGCT+TGG 0.403215 7.2:+79378025 MS.gene43208:CDS
GATCTACAAAATGCAGCTTC+TGG 0.417738 7.2:+79378180 MS.gene43208:CDS
CTTCGAACTTCACCTTCACT+TGG 0.420634 7.2:-79379065 None:intergenic
TTACTAAGCCCCTCCTGGTC+TGG 0.421538 7.2:-79379182 None:intergenic
AGTCTAAAATCCTCTCGGTT+TGG 0.427353 7.2:-79378936 None:intergenic
GAGATATTCCCAACACTTTG+TGG 0.436079 7.2:+79379109 MS.gene43208:CDS
GAAGTCAGAAGTTGAGGATA+GGG 0.442070 7.2:+79379087 MS.gene43208:CDS
TTGCATATCCAAATGATTTG+TGG 0.442799 7.2:-79379357 None:intergenic
AGCTAAGTTTGCAGCAGCTA+AGG 0.445509 7.2:+79378752 MS.gene43208:CDS
CCTCCTGATAGTTTGACAAT+GGG 0.445696 7.2:-79379266 None:intergenic
GTGTTTCATCCATTGTTAGT+AGG 0.453766 7.2:-79379133 None:intergenic
CATTCTCCAGCCGCCACTAA+AGG 0.455107 7.2:-79378376 None:intergenic
AGAAGGACATCAATATTCTT+AGG 0.458676 7.2:-79378063 None:intergenic
CTTGCTTACTAAGCCCCTCC+TGG 0.460120 7.2:-79379187 None:intergenic
TGATGTCCTTCTGGTTGAGC+AGG 0.464580 7.2:+79378074 MS.gene43208:CDS
GGTGTAAGTTCAGTAGGTTC+AGG 0.465377 7.2:-79378876 None:intergenic
AAATTTCCCTGGAACATTTG+AGG 0.467370 7.2:+79379520 MS.gene43208:CDS
GTGCAAAACTTGGTAAATAT+GGG 0.472556 7.2:+79379219 MS.gene43208:CDS
CAAAATCCTTTAGTGGCGGC+TGG 0.473137 7.2:+79378370 MS.gene43208:CDS
TAGTAGGTCCACAAAGTGTT+GGG 0.476791 7.2:-79379117 None:intergenic
TATCAGGAGGGCAGAAAGCT+CGG 0.480167 7.2:+79379279 MS.gene43208:CDS
CAAATATGGGTTGTTGAAGA+TGG 0.482826 7.2:+79379488 MS.gene43208:CDS
GTTCAGTAGGTTCAGGAAAG+TGG 0.490159 7.2:-79378869 None:intergenic
CCCTCCTGATAGTTTGACAA+TGG 0.490991 7.2:-79379267 None:intergenic
ATCAGGAGGGCAGAAAGCTC+GGG 0.492201 7.2:+79379280 MS.gene43208:CDS
TGATGCATTGGCTGATGCGC+TGG 0.493126 7.2:+79379385 MS.gene43208:CDS
AGACTCTCGGATGTTGATGT+TGG 0.493998 7.2:+79378954 MS.gene43208:CDS
CCTCAGGTCAAGATGATTAG+TGG 0.497140 7.2:-79378457 None:intergenic
AAAAGCAAAAGCAAGGGAAA+GGG 0.497237 7.2:+79378780 MS.gene43208:CDS
GGACTCGTGTTGCCATTGTT+GGG 0.501610 7.2:+79378988 MS.gene43208:CDS
CTGGTTGAGCAGGAGGTAGT+TGG 0.501745 7.2:+79378084 MS.gene43208:CDS
CGTCCTACAAAATCCTTTAG+TGG 0.502520 7.2:+79378363 MS.gene43208:CDS
TTGAAACTTCATTTCTATCG+TGG 0.502609 7.2:+79378594 MS.gene43208:CDS
TATTGAAGCTTCTTGCTTGG+AGG 0.502846 7.2:+79378028 MS.gene43208:CDS
TTCGAAGAAGTCAGAAGTTG+AGG 0.502896 7.2:+79379081 MS.gene43208:CDS
AATGCAGCTTCTGGTGAAGA+AGG 0.504187 7.2:+79378189 MS.gene43208:CDS
GAGGCTGTTCGTGCAAAACT+TGG 0.509140 7.2:+79379209 MS.gene43208:CDS
AGAAGTCAGAAGTTGAGGAT+AGG 0.509662 7.2:+79379086 MS.gene43208:CDS
TTAGTAGGTCCACAAAGTGT+TGG 0.510313 7.2:-79379118 None:intergenic
TCTTGCTTGGAGGAAGATAC+CGG 0.512342 7.2:+79378038 MS.gene43208:CDS
TAGAGGAGTACTTGTGTCGT+TGG 0.513249 7.2:+79378493 MS.gene43208:CDS
AGTGGAGGTGTAAGTTCAGT+AGG 0.514390 7.2:-79378882 None:intergenic
GAAAAGCAAAAGCAAGGGAA+AGG 0.518492 7.2:+79378779 MS.gene43208:CDS
TATGAACAATTACAACTGAT+GGG 0.518809 7.2:+79378270 MS.gene43208:CDS
GTATGAACAATTACAACTGA+TGG 0.520659 7.2:+79378269 MS.gene43208:CDS
AAATGATACTAACGAGGAAG+AGG 0.525034 7.2:+79378221 MS.gene43208:CDS
GATGCGCTGGATGAATTCAC+TGG 0.525230 7.2:+79379398 MS.gene43208:CDS
TGTCCTTCTGGTTGAGCAGG+AGG 0.526914 7.2:+79378077 MS.gene43208:CDS
TAAGCCCCTCCTGGTCTGGA+TGG 0.527473 7.2:-79379178 None:intergenic
ATTGTTGGGCCTAATGGTGC+TGG 0.529640 7.2:+79379002 MS.gene43208:CDS
AGACGAAGAAGGTACTGAAC+AGG 0.533085 7.2:-79379155 None:intergenic
TGGAACATTTGAGGATTACA+AGG 0.538781 7.2:+79379529 MS.gene43208:CDS
TATGCAAAGTATTGATGCAT+TGG 0.543005 7.2:+79379373 MS.gene43208:CDS
ACTAACGAGGAAGAGGATGC+AGG 0.546607 7.2:+79378228 MS.gene43208:CDS
GAACAAGGCTCAACAAGATA+AGG 0.549422 7.2:+79378719 MS.gene43208:CDS
AGCTAGAAGAACCGGGAACA+AGG 0.549535 7.2:+79378704 MS.gene43208:CDS
TGAAGAACGGAGTCAAATAT+GGG 0.551908 7.2:+79379475 MS.gene43208:CDS
GGCACTGTCAGAAATTTCCC+TGG 0.559821 7.2:+79379509 MS.gene43208:CDS
CGTCTCCATCCAGACCAGGA+GGG 0.561023 7.2:+79379173 MS.gene43208:CDS
GTCTCCATCCAGACCAGGAG+GGG 0.564083 7.2:+79379174 MS.gene43208:CDS
CACTAATCATCTTGACCTGA+GGG 0.565689 7.2:+79378458 MS.gene43208:CDS
CTTTGTGGACCTACTAACAA+TGG 0.566897 7.2:+79379124 MS.gene43208:CDS
TCTTCGTCTCCATCCAGACC+AGG 0.570272 7.2:+79379169 MS.gene43208:CDS
ACTTCAATAAGCTGCAGAAG+TGG 0.570862 7.2:-79378900 None:intergenic
GGAATCGAAAAGCAAAAGCA+AGG 0.571756 7.2:+79378773 MS.gene43208:CDS
TTGACCTGAGGGCTGTTCTG+TGG 0.577822 7.2:+79378469 MS.gene43208:CDS
ACATCAATATTCTTAGGCAC+CGG 0.584768 7.2:-79378057 None:intergenic
ACACTGCTGAATCTTCTAGC+TGG 0.589769 7.2:+79379032 MS.gene43208:CDS
TAGAGGTACCACACAAGTGG+AGG 0.593380 7.2:+79378829 MS.gene43208:CDS
GAATCGAAAAGCAAAAGCAA+GGG 0.597247 7.2:+79378774 MS.gene43208:CDS
CTTGTGTGGTACCTCTACTT+GGG 0.597963 7.2:-79378823 None:intergenic
CTCAGGTCAAGATGATTAGT+GGG 0.599587 7.2:-79378456 None:intergenic
GGGAAAGGGAAAGGTTGATG+AGG 0.600456 7.2:+79378794 MS.gene43208:CDS
CCGAGAGTCTAAAATCCTCT+CGG 0.603865 7.2:-79378941 None:intergenic
CTAACCACAGAACAGCCCTC+AGG 0.604974 7.2:-79378473 None:intergenic
CTGTAGTCCCTCCACTTGTG+TGG 0.605482 7.2:-79378837 None:intergenic
TTGATGTTGGTATTGATATG+GGG 0.606166 7.2:+79378967 MS.gene43208:CDS
AAGTAGAGGTACCACACAAG+TGG 0.606298 7.2:+79378826 MS.gene43208:CDS
CAAAAGCAAGGGAAAGGGAA+AGG 0.608390 7.2:+79378785 MS.gene43208:CDS
GGGGTAAGATGATTATGACT+TGG 0.608520 7.2:-79379245 None:intergenic
TCATCGAGCAATAATAGAGT+GGG 0.608704 7.2:-79378432 None:intergenic
TCAATAAGCTGCAGAAGTGG+AGG 0.610264 7.2:-79378897 None:intergenic
GGTGATTTGGTTCCAAGTGA+AGG 0.610276 7.2:+79379053 MS.gene43208:CDS
TGTAATCCTCAAATGTTCCA+GGG 0.613886 7.2:-79379526 None:intergenic
TTCATCGAGCAATAATAGAG+TGG 0.615022 7.2:-79378433 None:intergenic
GGAGGGGCTTAGTAAGCAAG+AGG 0.616783 7.2:+79379190 MS.gene43208:CDS
CCCATTGTCAAACTATCAGG+AGG 0.619312 7.2:+79379266 MS.gene43208:CDS
TCATCTAACAATAAAATGTG+AGG 0.624906 7.2:-79379332 None:intergenic
CTCCTGATAGTTTGACAATG+GGG 0.626825 7.2:-79379265 None:intergenic
CCACTAATCATCTTGACCTG+AGG 0.627165 7.2:+79378457 MS.gene43208:CDS
CTACCTCCTGCTCAACCAGA+AGG 0.630434 7.2:-79378080 None:intergenic
TGAAAGCAGCTAGAAGAACC+GGG 0.637063 7.2:+79378697 MS.gene43208:CDS
AGCACCATTAGGCCCAACAA+TGG 0.640352 7.2:-79379000 None:intergenic
GGTCTGGATGGAGACGAAGA+AGG 0.643717 7.2:-79379166 None:intergenic
GGCTCAACAAGATAAGGTGA+AGG 0.644665 7.2:+79378725 MS.gene43208:CDS
TCGTCTCCATCCAGACCAGG+AGG 0.645629 7.2:+79379172 MS.gene43208:CDS
TAAAATGTGAGGTCTTGACA+TGG 0.645742 7.2:-79379321 None:intergenic
TCCTGATAGTTTGACAATGG+GGG 0.650226 7.2:-79379264 None:intergenic
TGAGGATGAGACCCAAGTAG+AGG 0.652669 7.2:+79378812 MS.gene43208:CDS
AGAGGTACCACACAAGTGGA+GGG 0.653345 7.2:+79378830 MS.gene43208:CDS
AGGAGGGCAGAAAGCTCGGG+TGG 0.658600 7.2:+79379283 MS.gene43208:CDS
CCTACAAAATCCTTTAGTGG+CGG 0.660892 7.2:+79378366 MS.gene43208:CDS
ATGAACAATTACAACTGATG+GGG 0.661536 7.2:+79378271 MS.gene43208:CDS
AGCTTCTGGTGAAGAAGGTG+TGG 0.667605 7.2:+79378194 MS.gene43208:CDS
GCGCTGGATGAATTCACTGG+TGG 0.669802 7.2:+79379401 MS.gene43208:CDS
CCATTGTCAAACTATCAGGA+GGG 0.684004 7.2:+79379267 MS.gene43208:CDS
CAAGTGGAGGGACTACAGCG+TGG 0.701926 7.2:+79378842 MS.gene43208:CDS
CTTCAGTTACCCAAACCGAG+AGG 0.710739 7.2:+79378926 MS.gene43208:CDS
GTGTCTGTGATGATGAAGAA+CGG 0.713477 7.2:+79379462 MS.gene43208:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TATGAACAATTACAACTGAT+GGG + chr7.2:79378270-79378289 MS.gene43208:CDS 25.0%
! TCATCTAACAATAAAATGTG+AGG - chr7.2:79379335-79379354 None:intergenic 25.0%
AGAAGGACATCAATATTCTT+AGG - chr7.2:79378066-79378085 None:intergenic 30.0%
ATGAACAATTACAACTGATG+GGG + chr7.2:79378271-79378290 MS.gene43208:CDS 30.0%
GGATAAAAATGATACTAACG+AGG + chr7.2:79378215-79378234 MS.gene43208:CDS 30.0%
GTATGAACAATTACAACTGA+TGG + chr7.2:79378269-79378288 MS.gene43208:CDS 30.0%
GTGCAAAACTTGGTAAATAT+GGG + chr7.2:79379219-79379238 MS.gene43208:CDS 30.0%
TAAGAATATTGATGTCCTTC+TGG + chr7.2:79378065-79378084 MS.gene43208:CDS 30.0%
TTGAAACTTCATTTCTATCG+TGG + chr7.2:79378594-79378613 MS.gene43208:CDS 30.0%
TTGCATATCCAAATGATTTG+TGG - chr7.2:79379360-79379379 None:intergenic 30.0%
! TGCATATCCAAATGATTTGT+GGG - chr7.2:79379359-79379378 None:intergenic 30.0%
!! AATTTTGATGCTTTTGAGAG+TGG + chr7.2:79378618-79378637 MS.gene43208:CDS 30.0%
!! ATTTTGATGCTTTTGAGAGT+GGG + chr7.2:79378619-79378638 MS.gene43208:CDS 30.0%
!! GTTGATGTTGGTATTGATAT+GGG + chr7.2:79378966-79378985 MS.gene43208:CDS 30.0%
!! TATGCAAAGTATTGATGCAT+TGG + chr7.2:79379373-79379392 MS.gene43208:CDS 30.0%
!! TGTTGATGTTGGTATTGATA+TGG + chr7.2:79378965-79378984 MS.gene43208:CDS 30.0%
!! TTGATGTTGGTATTGATATG+GGG + chr7.2:79378967-79378986 MS.gene43208:CDS 30.0%
AAAAGCAAAAGCAAGGGAAA+GGG + chr7.2:79378780-79378799 MS.gene43208:CDS 35.0%
AAATGATACTAACGAGGAAG+AGG + chr7.2:79378221-79378240 MS.gene43208:CDS 35.0%
AAATTTCCCTGGAACATTTG+AGG + chr7.2:79379520-79379539 MS.gene43208:CDS 35.0%
ACATCAATATTCTTAGGCAC+CGG - chr7.2:79378060-79378079 None:intergenic 35.0%
AGATGAACCCACAAATCATT+TGG + chr7.2:79379349-79379368 MS.gene43208:CDS 35.0%
ATGAAGAACGGAGTCAAATA+TGG + chr7.2:79379474-79379493 MS.gene43208:CDS 35.0%
CGTGCAAAACTTGGTAAATA+TGG + chr7.2:79379218-79379237 MS.gene43208:CDS 35.0%
GAATCGAAAAGCAAAAGCAA+GGG + chr7.2:79378774-79378793 MS.gene43208:CDS 35.0%
GTGTTTCATCCATTGTTAGT+AGG - chr7.2:79379136-79379155 None:intergenic 35.0%
TAAAATGTGAGGTCTTGACA+TGG - chr7.2:79379324-79379343 None:intergenic 35.0%
TCATCGAGCAATAATAGAGT+GGG - chr7.2:79378435-79378454 None:intergenic 35.0%
TCGTTGGAAAAAAACTTTGG+TGG + chr7.2:79378509-79378528 MS.gene43208:CDS 35.0%
TGAAGAACGGAGTCAAATAT+GGG + chr7.2:79379475-79379494 MS.gene43208:CDS 35.0%
TGGAACATTTGAGGATTACA+AGG + chr7.2:79379529-79379548 MS.gene43208:CDS 35.0%
TGTAATCCTCAAATGTTCCA+GGG - chr7.2:79379529-79379548 None:intergenic 35.0%
TTCATCGAGCAATAATAGAG+TGG - chr7.2:79378436-79378455 None:intergenic 35.0%
TTGTAATCCTCAAATGTTCC+AGG - chr7.2:79379530-79379549 None:intergenic 35.0%
! CAAATATGGGTTGTTGAAGA+TGG + chr7.2:79379488-79379507 MS.gene43208:CDS 35.0%
! CACTAAAGGATTTTGTAGGA+CGG - chr7.2:79378365-79378384 None:intergenic 35.0%
! GTGTCGTTGGAAAAAAACTT+TGG + chr7.2:79378506-79378525 MS.gene43208:CDS 35.0%
!!! TCAAAGATTTTAGCTGGTCT+GGG + chr7.2:79378318-79378337 MS.gene43208:CDS 35.0%
ACTTCAATAAGCTGCAGAAG+TGG - chr7.2:79378903-79378922 None:intergenic 40.0%
AGAAGTCAGAAGTTGAGGAT+AGG + chr7.2:79379086-79379105 MS.gene43208:CDS 40.0%
CACTAATCATCTTGACCTGA+GGG + chr7.2:79378458-79378477 MS.gene43208:CDS 40.0%
CACTATTGAAGCTTCTTGCT+TGG + chr7.2:79378025-79378044 MS.gene43208:CDS 40.0%
CCATTGTCAAACTATCAGGA+GGG + chr7.2:79379267-79379286 MS.gene43208:CDS 40.0%
CCTACAAAATCCTTTAGTGG+CGG + chr7.2:79378366-79378385 MS.gene43208:CDS 40.0%
CCTCCTGATAGTTTGACAAT+GGG - chr7.2:79379269-79379288 None:intergenic 40.0%
CGTCCTACAAAATCCTTTAG+TGG + chr7.2:79378363-79378382 MS.gene43208:CDS 40.0%
CTCAGGTCAAGATGATTAGT+GGG - chr7.2:79378459-79378478 None:intergenic 40.0%
CTCCTGATAGTTTGACAATG+GGG - chr7.2:79379268-79379287 None:intergenic 40.0%
CTTTGTGGACCTACTAACAA+TGG + chr7.2:79379124-79379143 MS.gene43208:CDS 40.0%
GAAAAGCAAAAGCAAGGGAA+AGG + chr7.2:79378779-79378798 MS.gene43208:CDS 40.0%
GAACAAGGCTCAACAAGATA+AGG + chr7.2:79378719-79378738 MS.gene43208:CDS 40.0%
GAAGTCAGAAGTTGAGGATA+GGG + chr7.2:79379087-79379106 MS.gene43208:CDS 40.0%
GAGATATTCCCAACACTTTG+TGG + chr7.2:79379109-79379128 MS.gene43208:CDS 40.0%
GATCTACAAAATGCAGCTTC+TGG + chr7.2:79378180-79378199 MS.gene43208:CDS 40.0%
GGAATCGAAAAGCAAAAGCA+AGG + chr7.2:79378773-79378792 MS.gene43208:CDS 40.0%
GGGGTAAGATGATTATGACT+TGG - chr7.2:79379248-79379267 None:intergenic 40.0%
TATTGAAGCTTCTTGCTTGG+AGG + chr7.2:79378028-79378047 MS.gene43208:CDS 40.0%
TCCTGATAGTTTGACAATGG+GGG - chr7.2:79379267-79379286 None:intergenic 40.0%
TTAGTAGGTCCACAAAGTGT+TGG - chr7.2:79379121-79379140 None:intergenic 40.0%
TTCGAAGAAGTCAGAAGTTG+AGG + chr7.2:79379081-79379100 MS.gene43208:CDS 40.0%
TTGAAAGCAGCTAGAAGAAC+CGG + chr7.2:79378696-79378715 MS.gene43208:CDS 40.0%
! AGTCTAAAATCCTCTCGGTT+TGG - chr7.2:79378939-79378958 None:intergenic 40.0%
! GAATCTTCTAGCTGGTGATT+TGG + chr7.2:79379040-79379059 MS.gene43208:CDS 40.0%
! GGTTTTACAAAGGACATGCA+GGG + chr7.2:79378339-79378358 MS.gene43208:CDS 40.0%
! GTAGATTTTCCAGCACCATT+AGG - chr7.2:79379014-79379033 None:intergenic 40.0%
! GTCTAAAATCCTCTCGGTTT+GGG - chr7.2:79378938-79378957 None:intergenic 40.0%
! GTGTCTGTGATGATGAAGAA+CGG + chr7.2:79379462-79379481 MS.gene43208:CDS 40.0%
! TAGTAGGTCCACAAAGTGTT+GGG - chr7.2:79379120-79379139 None:intergenic 40.0%
!! CAAGCGTCAAAGATTTTAGC+TGG + chr7.2:79378312-79378331 MS.gene43208:CDS 40.0%
!!! GTCAAAGATTTTAGCTGGTC+TGG + chr7.2:79378317-79378336 MS.gene43208:CDS 40.0%
AATGCAGCTTCTGGTGAAGA+AGG + chr7.2:79378189-79378208 MS.gene43208:CDS 45.0%
ACACTGCTGAATCTTCTAGC+TGG + chr7.2:79379032-79379051 MS.gene43208:CDS 45.0%
ACCCCCATTGTCAAACTATC+AGG + chr7.2:79379263-79379282 MS.gene43208:CDS 45.0%
ACTTGTGTGGTACCTCTACT+TGG - chr7.2:79378827-79378846 None:intergenic 45.0%
AGACTCTCGGATGTTGATGT+TGG + chr7.2:79378954-79378973 MS.gene43208:CDS 45.0%
AGCTAAGTTTGCAGCAGCTA+AGG + chr7.2:79378752-79378771 MS.gene43208:CDS 45.0%
CAAAAGCAAGGGAAAGGGAA+AGG + chr7.2:79378785-79378804 MS.gene43208:CDS 45.0%
CCACTAATCATCTTGACCTG+AGG + chr7.2:79378457-79378476 MS.gene43208:CDS 45.0%
CCCATTGTCAAACTATCAGG+AGG + chr7.2:79379266-79379285 MS.gene43208:CDS 45.0%
CCCTCCTGATAGTTTGACAA+TGG - chr7.2:79379270-79379289 None:intergenic 45.0%
CCTCAGGTCAAGATGATTAG+TGG - chr7.2:79378460-79378479 None:intergenic 45.0%
CTTCGAACTTCACCTTCACT+TGG - chr7.2:79379068-79379087 None:intergenic 45.0%
CTTGTGTGGTACCTCTACTT+GGG - chr7.2:79378826-79378845 None:intergenic 45.0%
GGCTCAACAAGATAAGGTGA+AGG + chr7.2:79378725-79378744 MS.gene43208:CDS 45.0%
GGTGTAAGTTCAGTAGGTTC+AGG - chr7.2:79378879-79378898 None:intergenic 45.0%
GTTCAGTAGGTTCAGGAAAG+TGG - chr7.2:79378872-79378891 None:intergenic 45.0%
TCAATAAGCTGCAGAAGTGG+AGG - chr7.2:79378900-79378919 None:intergenic 45.0%
TCTTGCTTGGAGGAAGATAC+CGG + chr7.2:79378038-79378057 MS.gene43208:CDS 45.0%
TGAAAGCAGCTAGAAGAACC+GGG + chr7.2:79378697-79378716 MS.gene43208:CDS 45.0%
! AGTGGAGGTGTAAGTTCAGT+AGG - chr7.2:79378885-79378904 None:intergenic 45.0%
! CCGAGAGGATTTTAGACTCT+CGG + chr7.2:79378941-79378960 MS.gene43208:CDS 45.0%
! CCGAGAGTCTAAAATCCTCT+CGG - chr7.2:79378944-79378963 None:intergenic 45.0%
! CCGCCACTAAAGGATTTTGT+AGG - chr7.2:79378369-79378388 None:intergenic 45.0%
! GGGTTTTACAAAGGACATGC+AGG + chr7.2:79378338-79378357 MS.gene43208:CDS 45.0%
!! AAGTAGAGGTACCACACAAG+TGG + chr7.2:79378826-79378845 MS.gene43208:CDS 45.0%
!! AGACGAAGAAGGTACTGAAC+AGG - chr7.2:79379158-79379177 None:intergenic 45.0%
!! AGCTGGTCTGGGTTTTACAA+AGG + chr7.2:79378329-79378348 MS.gene43208:CDS 45.0%
!! ATCTTGTTGAGCCTTGTTCC+CGG - chr7.2:79378718-79378737 None:intergenic 45.0%
!! GGTGATTTGGTTCCAAGTGA+AGG + chr7.2:79379053-79379072 MS.gene43208:CDS 45.0%
!! TAGAGGAGTACTTGTGTCGT+TGG + chr7.2:79378493-79378512 MS.gene43208:CDS 45.0%
ACTAACGAGGAAGAGGATGC+AGG + chr7.2:79378228-79378247 MS.gene43208:CDS 50.0%
AGCACCATTAGGCCCAACAA+TGG - chr7.2:79379003-79379022 None:intergenic 50.0%
AGCTAGAAGAACCGGGAACA+AGG + chr7.2:79378704-79378723 MS.gene43208:CDS 50.0%
AGCTTCTGGTGAAGAAGGTG+TGG + chr7.2:79378194-79378213 MS.gene43208:CDS 50.0%
ATTGTTGGGCCTAATGGTGC+TGG + chr7.2:79379002-79379021 MS.gene43208:CDS 50.0%
CAAAATCCTTTAGTGGCGGC+TGG + chr7.2:79378370-79378389 MS.gene43208:CDS 50.0%
CTTCAGTTACCCAAACCGAG+AGG + chr7.2:79378926-79378945 MS.gene43208:CDS 50.0%
GAGGCTGTTCGTGCAAAACT+TGG + chr7.2:79379209-79379228 MS.gene43208:CDS 50.0%
GATGCGCTGGATGAATTCAC+TGG + chr7.2:79379398-79379417 MS.gene43208:CDS 50.0%
GGACTCGTGTTGCCATTGTT+GGG + chr7.2:79378988-79379007 MS.gene43208:CDS 50.0%
GGCACTGTCAGAAATTTCCC+TGG + chr7.2:79379509-79379528 MS.gene43208:CDS 50.0%
GTTGCCATTGTTGGGCCTAA+TGG + chr7.2:79378996-79379015 MS.gene43208:CDS 50.0%
TATCAGGAGGGCAGAAAGCT+CGG + chr7.2:79379279-79379298 MS.gene43208:CDS 50.0%
TGAGGATGAGACCCAAGTAG+AGG + chr7.2:79378812-79378831 MS.gene43208:CDS 50.0%
! TGATGTCCTTCTGGTTGAGC+AGG + chr7.2:79378074-79378093 MS.gene43208:CDS 50.0%
!! AGAGGTACCACACAAGTGGA+GGG + chr7.2:79378830-79378849 MS.gene43208:CDS 50.0%
!! GGGAAAGGGAAAGGTTGATG+AGG + chr7.2:79378794-79378813 MS.gene43208:CDS 50.0%
!! TAGAGGTACCACACAAGTGG+AGG + chr7.2:79378829-79378848 MS.gene43208:CDS 50.0%
ATCAGGAGGGCAGAAAGCTC+GGG + chr7.2:79379280-79379299 MS.gene43208:CDS 55.0%
CATTCTCCAGCCGCCACTAA+AGG - chr7.2:79378379-79378398 None:intergenic 55.0%
CTAACCACAGAACAGCCCTC+AGG - chr7.2:79378476-79378495 None:intergenic 55.0%
CTACCTCCTGCTCAACCAGA+AGG - chr7.2:79378083-79378102 None:intergenic 55.0%
CTGGTTGAGCAGGAGGTAGT+TGG + chr7.2:79378084-79378103 MS.gene43208:CDS 55.0%
CTGTAGTCCCTCCACTTGTG+TGG - chr7.2:79378840-79378859 None:intergenic 55.0%
CTTGCTTACTAAGCCCCTCC+TGG - chr7.2:79379190-79379209 None:intergenic 55.0%
GAGGGCTGTTCTGTGGTTAG+AGG + chr7.2:79378476-79378495 MS.gene43208:CDS 55.0%
GCGCTGGATGAATTCACTGG+TGG + chr7.2:79379401-79379420 MS.gene43208:CDS 55.0%
GGAGGGGCTTAGTAAGCAAG+AGG + chr7.2:79379190-79379209 MS.gene43208:CDS 55.0%
GGGACTCGTGTTGCCATTGT+TGG + chr7.2:79378987-79379006 MS.gene43208:CDS 55.0%
GGTCTGGATGGAGACGAAGA+AGG - chr7.2:79379169-79379188 None:intergenic 55.0%
TCTTCGTCTCCATCCAGACC+AGG + chr7.2:79379169-79379188 MS.gene43208:CDS 55.0%
TTACTAAGCCCCTCCTGGTC+TGG - chr7.2:79379185-79379204 None:intergenic 55.0%
TTGACCTGAGGGCTGTTCTG+TGG + chr7.2:79378469-79378488 MS.gene43208:CDS 55.0%
! TGTCCTTCTGGTTGAGCAGG+AGG + chr7.2:79378077-79378096 MS.gene43208:CDS 55.0%
!! TGATGCATTGGCTGATGCGC+TGG + chr7.2:79379385-79379404 MS.gene43208:CDS 55.0%
CAAGTGGAGGGACTACAGCG+TGG + chr7.2:79378842-79378861 MS.gene43208:CDS 60.0%
CGTCTCCATCCAGACCAGGA+GGG + chr7.2:79379173-79379192 MS.gene43208:CDS 60.0%
GTCTCCATCCAGACCAGGAG+GGG + chr7.2:79379174-79379193 MS.gene43208:CDS 60.0%
TAAGCCCCTCCTGGTCTGGA+TGG - chr7.2:79379181-79379200 None:intergenic 60.0%
TCGTCTCCATCCAGACCAGG+AGG + chr7.2:79379172-79379191 MS.gene43208:CDS 60.0%
AGGAGGGCAGAAAGCTCGGG+TGG + chr7.2:79379283-79379302 MS.gene43208:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 79378012 79379592 79378012 ID=MS.gene43208
chr7.2 mRNA 79378012 79379592 79378012 ID=MS.gene43208.t1;Parent=MS.gene43208
chr7.2 exon 79378012 79379592 79378012 ID=MS.gene43208.t1.exon1;Parent=MS.gene43208.t1
chr7.2 CDS 79378012 79379592 79378012 ID=cds.MS.gene43208.t1;Parent=MS.gene43208.t1
Gene Sequence

>MS.gene43208

ATGGGCAAGTCAACACTATTGAAGCTTCTTGCTTGGAGGAAGATACCGGTGCCTAAGAATATTGATGTCCTTCTGGTTGAGCAGGAGGTAGTTGGCGATGATAAAACAGCGCTTGAAGCTGTTGTTTCAGCTAATGTTGAACTTATTAAAATTCGACAAGAAGTTGCTGATCTACAAAATGCAGCTTCTGGTGAAGAAGGTGTGGATAAAAATGATACTAACGAGGAAGAGGATGCAGGAGAAAAGCTAGCAGAGCTGTATGAACAATTACAACTGATGGGGTCTGATGCTGCTGAATCTCAAGCGTCAAAGATTTTAGCTGGTCTGGGTTTTACAAAGGACATGCAGGGCCGTCCTACAAAATCCTTTAGTGGCGGCTGGAGAATGAGAATTTCTTTAGCTCGAGCACTTTTTGTGCAGCCCACTCTATTATTGCTCGATGAACCCACTAATCATCTTGACCTGAGGGCTGTTCTGTGGTTAGAGGAGTACTTGTGTCGTTGGAAAAAAACTTTGGTGGTTGTATCACACGATAGAGATTTTCTCAATACAGTATGCTCTGAGATTATTCATCTGCATGATTTGAAACTTCATTTCTATCGTGGAAATTTTGATGCTTTTGAGAGTGGGTATGAACAGCGTCGTAGAGAAGCGAATAAGAAGTATGAGACTTTTGACAAGCAATTGAAAGCAGCTAGAAGAACCGGGAACAAGGCTCAACAAGATAAGGTGAAGGACAGAGCTAAGTTTGCAGCAGCTAAGGAATCGAAAAGCAAAAGCAAGGGAAAGGGAAAGGTTGATGAGGATGAGACCCAAGTAGAGGTACCACACAAGTGGAGGGACTACAGCGTGGAGTTCCACTTTCCTGAACCTACTGAACTTACACCTCCACTTCTGCAGCTTATTGAAGTGAGCTTCAGTTACCCAAACCGAGAGGATTTTAGACTCTCGGATGTTGATGTTGGTATTGATATGGGGACTCGTGTTGCCATTGTTGGGCCTAATGGTGCTGGAAAATCTACACTGCTGAATCTTCTAGCTGGTGATTTGGTTCCAAGTGAAGGTGAAGTTCGAAGAAGTCAGAAGTTGAGGATAGGGAGATATTCCCAACACTTTGTGGACCTACTAACAATGGATGAAACACCTGTTCAGTACCTTCTTCGTCTCCATCCAGACCAGGAGGGGCTTAGTAAGCAAGAGGCTGTTCGTGCAAAACTTGGTAAATATGGGCTACCAAGTCATAATCATCTTACCCCCATTGTCAAACTATCAGGAGGGCAGAAAGCTCGGGTGGTATTCACATCGATATCCATGTCAAGACCTCACATTTTATTGTTAGATGAACCCACAAATCATTTGGATATGCAAAGTATTGATGCATTGGCTGATGCGCTGGATGAATTCACTGGTGGAGTTGTTCTTGTTAGTCACGATTCTAGATTGATATCACGTGTCTGTGATGATGAAGAACGGAGTCAAATATGGGTTGTTGAAGATGGCACTGTCAGAAATTTCCCTGGAACATTTGAGGATTACAAGGATGATCTACTGAAAGAGATTAAAGCTGAAGTTGATGATTGA
Protein sequence

>MS.gene43208.t1

MGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANVELIKIRQEVADLQNAASGEEGVDKNDTNEEEDAGEKLAELYEQLQLMGSDAAESQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCSEIIHLHDLKLHFYRGNFDAFESGYEQRRREANKKYETFDKQLKAARRTGNKAQQDKVKDRAKFAAAKESKSKSKGKGKVDEDETQVEVPHKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPSEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGKYGLPSHNHLTPIVKLSGGQKARVVFTSISMSRPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSQIWVVEDGTVRNFPGTFEDYKDDLLKEIKAEVDD