AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052342


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052342.t1 MTR_4g076980 93.939 528 23 2 1 528 1 519 0.0 893
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052342.t1 AT1G51450 56.696 448 169 5 17 447 70 509 3.10e-160 466

Find 142 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAATTTGGTTTGGTATAA+AGG 0.175383 4.4:+33615962 MS.gene052342:CDS
TTTGAAAATCAAGTTGAAAA+TGG 0.186697 4.4:+33618835 MS.gene052342:CDS
TGCACAGTTAAGTTCAATTT+TGG 0.226186 4.4:+33618733 MS.gene052342:CDS
TTAACCTCCGGCAACGAAAT+TGG 0.268536 4.4:-33615320 None:intergenic
TATGGTGAAGGTGATGTTAT+TGG 0.268837 4.4:+33615893 MS.gene052342:CDS
AGATAAAGGTAGTGAGGTTA+GGG 0.291160 4.4:+33615723 MS.gene052342:CDS
GAGATAAAGGTAGTGAGGTT+AGG 0.301462 4.4:+33615722 MS.gene052342:CDS
AAGGCTTTGAGGGAGAATTA+TGG 0.304820 4.4:+33615860 MS.gene052342:CDS
TCAACCATTGGCTTGGGAAT+TGG 0.306015 4.4:-33618796 None:intergenic
GGGTATGATGGGAATAGTTT+TGG 0.326000 4.4:+33615806 MS.gene052342:CDS
TTGAAAATCAAGTTGAAAAT+GGG 0.342475 4.4:+33618836 MS.gene052342:CDS
ATGGTGAAGGTGATGTTATT+GGG 0.345667 4.4:+33615894 MS.gene052342:CDS
GGTGGATCTTCCTTAGCATC+TGG 0.361382 4.4:-33616004 None:intergenic
GGAAGAACCAATTTCGTTGC+CGG 0.373865 4.4:+33615313 MS.gene052342:CDS
GTTCGTGTGGTTGTTATTGT+TGG 0.379535 4.4:-33615495 None:intergenic
AGGCTTTGAGGGAGAATTAT+GGG 0.380543 4.4:+33615861 MS.gene052342:CDS
AATGGAGAAGGGTGATTTGC+AGG 0.380670 4.4:+33615775 MS.gene052342:CDS
GAAAGTTGCTTCTGCTTCTT+CGG 0.383566 4.4:-33615272 None:intergenic
TGTCTCCACCGTGGTTGATA+TGG 0.383829 4.4:+33615091 MS.gene052342:CDS
CAGGCACCAGTTGGGTATGA+TGG 0.386637 4.4:+33615794 MS.gene052342:CDS
TCCCTCCAACGACGGAAAAT+CGG 0.387502 4.4:+33615148 MS.gene052342:CDS
TGAAGAGGAAGATGAAGAAA+TGG 0.391962 4.4:+33614992 MS.gene052342:CDS
GACTAACCAGGTACAACTTT+AGG 0.400387 4.4:-33616025 None:intergenic
GAGAGTGGGCATACGCGGTT+GGG 0.404106 4.4:+33615746 MS.gene052342:CDS
TTCCTCTTCATCTTTGTATG+TGG 0.409042 4.4:-33614979 None:intergenic
GGAAGCAGGTGGTTCGGCGG+AGG 0.415371 4.4:-33615048 None:intergenic
CAAAGGGGTATAGAATGGTT+AGG 0.416258 4.4:+33615663 MS.gene052342:CDS
AATTATGGGGATGAGGGTTA+TGG 0.418179 4.4:+33615875 MS.gene052342:CDS
TTGAATGAGAGTAAATCAAA+TGG 0.425174 4.4:+33618889 MS.gene052342:CDS
TGCTGCTGCTGTGTCAATTC+CGG 0.425892 4.4:+33615349 MS.gene052342:CDS
GGTGGAGGAAGCAGGTGGTT+CGG 0.429695 4.4:-33615054 None:intergenic
TGCTTCTGCTTCTTCGGAAG+CGG 0.430953 4.4:-33615266 None:intergenic
GGTTCTTCTTCATCTTCATA+AGG 0.431063 4.4:-33615245 None:intergenic
GGTTCGACGGTGGAGGAAGC+AGG 0.436928 4.4:-33615062 None:intergenic
TTGACTGAGAAGAAATCTAA+TGG 0.437022 4.4:+33618862 MS.gene052342:CDS
GAAATTGGTTCTTCCTTGAC+AGG 0.440351 4.4:-33615305 None:intergenic
AGGGAGAATTATGGGGATGA+GGG 0.442350 4.4:+33615869 MS.gene052342:CDS
TAGTGAGGTTAGGGGAGAGT+GGG 0.445576 4.4:+33615732 MS.gene052342:CDS
GGAGAGTGGGCATACGCGGT+TGG 0.446321 4.4:+33615745 MS.gene052342:CDS
GTAAGATTCATAAGGCTTTG+AGG 0.449334 4.4:+33615849 MS.gene052342:CDS
AGTGAGGATAGGTTAAGTGC+AGG 0.449423 4.4:+33615635 MS.gene052342:CDS
TTTGGATATAGGGATATTGA+TGG 0.451263 4.4:+33615824 MS.gene052342:CDS
TAAGATTCATAAGGCTTTGA+GGG 0.456790 4.4:+33615850 MS.gene052342:CDS
GATAAACATATCTTCATCTC+CGG 0.457429 4.4:-33615581 None:intergenic
TTGACTGTGAAGAAATCAAC+AGG 0.457952 4.4:+33618916 MS.gene052342:CDS
GGAACTTCAACCATTGGCTT+GGG 0.460214 4.4:-33618802 None:intergenic
TAGGGCAACAAGAGGGGTAG+TGG 0.460385 4.4:+33615682 MS.gene052342:CDS
GTAGCTTTCAAAGACCTCTA+TGG 0.461594 4.4:+33618658 MS.gene052342:CDS
AGGAACTTCAACCATTGGCT+TGG 0.462086 4.4:-33618803 None:intergenic
AAGTTGAGTTGAGTGAGGAT+AGG 0.463307 4.4:+33615624 MS.gene052342:CDS
TTTCGGTGAATTCTTCTGTT+CGG 0.464189 4.4:-33615207 None:intergenic
GTAGTGAGGTTAGGGGAGAG+TGG 0.465147 4.4:+33615731 MS.gene052342:CDS
TCGACTGAGAAGAAATCAAA+TGG 0.469958 4.4:+33618943 MS.gene052342:CDS
TCGACTGAGAAGAAATCAAA+TGG 0.469958 4.4:+33618970 MS.gene052342:CDS
ATGGTTGAAGTTCCTCATCA+TGG 0.472322 4.4:+33618811 MS.gene052342:CDS
TGATGGGAGTAAGATTCATA+AGG 0.484252 4.4:+33615841 MS.gene052342:CDS
GGAGCAAACTTATCTCCATC+AGG 0.486308 4.4:-33615932 None:intergenic
GAGGGAGAATTATGGGGATG+AGG 0.488008 4.4:+33615868 MS.gene052342:CDS
TTAAGTGCAGGGAGCACAAA+GGG 0.488141 4.4:+33615647 MS.gene052342:CDS
GAAGCAGGTGGTTCGGCGGA+GGG 0.494154 4.4:-33615047 None:intergenic
GTTGTTGTTGTGACGGTTGA+AGG 0.495815 4.4:-33615020 None:intergenic
TTCGCCGGTGTGGTTGTAGC+CGG 0.498253 4.4:-33615368 None:intergenic
TTGTCAGGAAACCTCTGTAC+TGG 0.500278 4.4:-33615545 None:intergenic
TGAGAAGAAATCAGATGAAG+AGG 0.505178 4.4:+33619083 MS.gene052342:CDS
CTATTCCCATCATACCCAAC+TGG 0.505256 4.4:-33615800 None:intergenic
TGCTTATAATCCAGATGCTA+AGG 0.510784 4.4:+33615994 MS.gene052342:CDS
CTTCTGTTCGGCAGAGTCGT+CGG 0.512067 4.4:-33615195 None:intergenic
AGCGGGTGGTTCGACGGTGG+AGG 0.521228 4.4:-33615069 None:intergenic
GGTGATTTGCAGGCACCAGT+TGG 0.528516 4.4:+33615785 MS.gene052342:CDS
ATCAACCACGGTGGAGACAG+CGG 0.529152 4.4:-33615087 None:intergenic
GCTACAACCACACCGGCGAA+TGG 0.531990 4.4:+33615371 MS.gene052342:CDS
AGAGTATACATTGAAGCAGC+AGG 0.532295 4.4:-33618694 None:intergenic
TCCCTCATGATTTCAATGAA+CGG 0.533971 4.4:+33618773 MS.gene052342:CDS
GGGGATGAGGGTTATGGTGA+AGG 0.534213 4.4:+33615881 MS.gene052342:CDS
AACAATAACAACCACACGAA+CGG 0.535403 4.4:+33615497 MS.gene052342:CDS
TGATGAGGAACTTCAACCAT+TGG 0.535810 4.4:-33618808 None:intergenic
GGCTTTGAGGGAGAATTATG+GGG 0.538168 4.4:+33615862 MS.gene052342:CDS
AGAGTCGTCGGAGGGTTCAT+CGG 0.539004 4.4:-33615183 None:intergenic
GTGATTTGCAGGCACCAGTT+GGG 0.540685 4.4:+33615786 MS.gene052342:CDS
GGAGACAGCGGGTGGTTCGA+CGG 0.541479 4.4:-33615075 None:intergenic
GAGGGGTAGTGGAAGGTGCT+TGG 0.542182 4.4:+33615693 MS.gene052342:CDS
GTTGGGTTGGACAATGGAGA+AGG 0.544198 4.4:+33615763 MS.gene052342:CDS
AAAGGGGTATAGAATGGTTA+GGG 0.544833 4.4:+33615664 MS.gene052342:CDS
GGGTGCAGTTGTTGTTGTGA+CGG 0.549217 4.4:-33615027 None:intergenic
TTGGATATAGGGATATTGAT+GGG 0.550063 4.4:+33615825 MS.gene052342:CDS
GAATGGTTAGGGCAACAAGA+GGG 0.550128 4.4:+33615675 MS.gene052342:CDS
GTGGGCATACGCGGTTGGGT+TGG 0.554420 4.4:+33615750 MS.gene052342:CDS
GTTGTCGCTGTTCCATTCGC+CGG 0.554715 4.4:-33615383 None:intergenic
GGCCGTTCATTGAAATCATG+AGG 0.557836 4.4:-33618775 None:intergenic
CGCTGTTCCATTCGCCGGTG+TGG 0.557847 4.4:-33615378 None:intergenic
TGAAAATCAAGTTGAAAATG+GGG 0.558856 4.4:+33618837 MS.gene052342:CDS
GAAATCAGATGAAGAGGCGA+AGG 0.561598 4.4:+33619035 MS.gene052342:CDS
AGGCACCAGTTGGGTATGAT+GGG 0.561997 4.4:+33615795 MS.gene052342:CDS
GCAGCAGCATTGTTAACCTC+CGG 0.563639 4.4:-33615332 None:intergenic
AGCCACATACAAAGATGAAG+AGG 0.566540 4.4:+33614977 MS.gene052342:CDS
TCAACCACGGTGGAGACAGC+GGG 0.567122 4.4:-33615086 None:intergenic
GAGCACAAAGGGGTATAGAA+TGG 0.569842 4.4:+33615658 MS.gene052342:CDS
TGTTCGGCAGAGTCGTCGGA+GGG 0.573277 4.4:-33615191 None:intergenic
ACCGCCACTCCCTCCAACGA+CGG 0.573718 4.4:+33615140 MS.gene052342:CDS
GCAACAAGAGGGGTAGTGGA+AGG 0.575466 4.4:+33615686 MS.gene052342:CDS
GGAGATGAAATCAGATGAAG+AGG 0.575677 4.4:+33619029 MS.gene052342:CDS
TTCCTCTCTGAACCCTGTCA+AGG 0.578436 4.4:+33615292 MS.gene052342:CDS
TACGCGGTTGGGTTGGACAA+TGG 0.582610 4.4:+33615757 MS.gene052342:CDS
CTGTTCGGCAGAGTCGTCGG+AGG 0.586497 4.4:-33615192 None:intergenic
TAGGGGAGAGTGGGCATACG+CGG 0.588572 4.4:+33615741 MS.gene052342:CDS
GGAGAAAGTTGAGTTGAGTG+AGG 0.590150 4.4:+33615619 MS.gene052342:CDS
TATCTTCTCCACCGTTCGTG+TGG 0.591797 4.4:-33615508 None:intergenic
AAAATCAAATGGAGAGTCGA+AGG 0.593858 4.4:+33619008 MS.gene052342:CDS
TCGTCGGAGGGTTCATCGGA+GGG 0.603476 4.4:-33615179 None:intergenic
TGTGGCTTGAAGTGTATCCA+TGG 0.604461 4.4:-33614961 None:intergenic
TAACCAGGTACAACTTTAGG+TGG 0.604839 4.4:-33616022 None:intergenic
GACAGCGGGTGGTTCGACGG+TGG 0.608842 4.4:-33615072 None:intergenic
GTGAGGATAGGTTAAGTGCA+GGG 0.610539 4.4:+33615636 MS.gene052342:CDS
TCCGTCGTTGGAGGGAGTGG+CGG 0.612107 4.4:-33615141 None:intergenic
GTCGTCGGAGGGTTCATCGG+AGG 0.615642 4.4:-33615180 None:intergenic
GATCCACCTAAAGTTGTACC+TGG 0.623881 4.4:+33616019 MS.gene052342:CDS
TTGGGTTGGACAATGGAGAA+GGG 0.625725 4.4:+33615764 MS.gene052342:CDS
TTTATCAAAAGTTTACAAAG+CGG 0.625877 4.4:+33615598 MS.gene052342:CDS
GTTAAGTGCAGGGAGCACAA+AGG 0.630946 4.4:+33615646 MS.gene052342:CDS
AAATTGGTTCTTCCTTGACA+GGG 0.631947 4.4:-33615304 None:intergenic
GCCGTTCATTGAAATCATGA+GGG 0.633774 4.4:-33618774 None:intergenic
GATAAAGGTAGTGAGGTTAG+GGG 0.636348 4.4:+33615724 MS.gene052342:CDS
GGAGGAAGCAGGTGGTTCGG+CGG 0.637457 4.4:-33615051 None:intergenic
AATGGTTAGGGCAACAAGAG+GGG 0.638305 4.4:+33615676 MS.gene052342:CDS
ACGGCCAATTCCCAAGCCAA+TGG 0.642692 4.4:+33618792 MS.gene052342:CDS
AGAACCAATTTCGTTGCCGG+AGG 0.644292 4.4:+33615316 MS.gene052342:CDS
GATAGTAACGACCGCCATAG+AGG 0.646862 4.4:-33618672 None:intergenic
TGACAAAAGTGACGATACAC+CGG 0.648124 4.4:+33615562 MS.gene052342:CDS
AATAACAACCACACGAACGG+TGG 0.652994 4.4:+33615500 MS.gene052342:CDS
TCGACGGTGGAGGAAGCAGG+TGG 0.654043 4.4:-33615059 None:intergenic
TTCTGATAACACCAGTACAG+AGG 0.656427 4.4:+33615534 MS.gene052342:CDS
TGGTTTGGTATAAAGGACAA+CGG 0.659021 4.4:+33615969 MS.gene052342:CDS
GGAGTGGCGGTAGTAATGAG+AGG 0.662166 4.4:-33615128 None:intergenic
ACCACGGTGGAGACAGCGGG+TGG 0.665511 4.4:-33615083 None:intergenic
AGAATGGTTAGGGCAACAAG+AGG 0.674035 4.4:+33615674 MS.gene052342:CDS
TTCCTTGACAGGGTTCAGAG+AGG 0.691426 4.4:-33615294 None:intergenic
TGTTAATTCCATATCAACCA+CGG 0.707113 4.4:-33615099 None:intergenic
GCTTTCAAAGACCTCTATGG+CGG 0.714320 4.4:+33618661 MS.gene052342:CDS
TAAGTGCAGGGAGCACAAAG+GGG 0.717611 4.4:+33615648 MS.gene052342:CDS
ACCACCCGCTGTCTCCACCG+TGG 0.719787 4.4:+33615082 MS.gene052342:CDS
TAATTCCATATCAACCACGG+TGG 0.756610 4.4:-33615096 None:intergenic
AATTCCGGCTACAACCACAC+CGG 0.762987 4.4:+33615364 MS.gene052342:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCATAAATTCATAATATATA+GGG + chr4.4:33618244-33618263 MS.gene052342:intron 10.0%
!!! TATACCTTTTTATATATTAT+CGG - chr4.4:33616687-33616706 None:intergenic 10.0%
!! AAATCGATAGTTATTATTTA+GGG + chr4.4:33616235-33616254 MS.gene052342:intron 15.0%
!! ATTATGAATTTATGACTAAT+GGG - chr4.4:33618239-33618258 None:intergenic 15.0%
!! GTCATAAATTCATAATATAT+AGG + chr4.4:33618243-33618262 MS.gene052342:intron 15.0%
!! TAAATCGATAGTTATTATTT+AGG + chr4.4:33616234-33616253 MS.gene052342:intron 15.0%
!! TATTATCAACAGATATAATA+TGG - chr4.4:33616721-33616740 None:intergenic 15.0%
!! TATTATGAATTTATGACTAA+TGG - chr4.4:33618240-33618259 None:intergenic 15.0%
!! TTGTAAATATATTAAACATG+AGG - chr4.4:33616621-33616640 None:intergenic 15.0%
!!! AATTTTGAACATTATTGATA+GGG + chr4.4:33616108-33616127 MS.gene052342:intron 15.0%
!! AAAAAACATGAAAAAGTAAC+TGG - chr4.4:33616484-33616503 None:intergenic 20.0%
!! AAAAAATGTGAAAAAGTAAC+TGG - chr4.4:33616550-33616569 None:intergenic 20.0%
!! AAAAACAAAAACAACAACAA+CGG + chr4.4:33615467-33615486 MS.gene052342:CDS 20.0%
!! AATATCTGAATATTCACTAT+TGG + chr4.4:33618139-33618158 MS.gene052342:intron 20.0%
!! AATCGATAGTTATTATTTAG+GGG + chr4.4:33616236-33616255 MS.gene052342:intron 20.0%
!! AGAAAAAGAATAACAATGTA+TGG + chr4.4:33615417-33615436 MS.gene052342:CDS 20.0%
!! ATATTCAGATATTCAGATTA+AGG - chr4.4:33618132-33618151 None:intergenic 20.0%
!! ATTAGATACACAACTTAATT+GGG + chr4.4:33618270-33618289 MS.gene052342:intron 20.0%
!! GAAAAAGAATAACAATGTAT+GGG + chr4.4:33615418-33615437 MS.gene052342:CDS 20.0%
!! TTCACCGATAATATATAAAA+AGG + chr4.4:33616680-33616699 MS.gene052342:intron 20.0%
!! TTTATCAAAAGTTTACAAAG+CGG + chr4.4:33615598-33615617 MS.gene052342:CDS 20.0%
!!! GAATTTTGAACATTATTGAT+AGG + chr4.4:33616107-33616126 MS.gene052342:intron 20.0%
!!! TTGAAAATCAAGTTGAAAAT+GGG + chr4.4:33618836-33618855 MS.gene052342:CDS 20.0%
!!! TTTGAAAATCAAGTTGAAAA+TGG + chr4.4:33618835-33618854 MS.gene052342:CDS 20.0%
!!! TTTTATATTAATTTGCCTGA+TGG + chr4.4:33615917-33615936 MS.gene052342:CDS 20.0%
!!! TTTTCTAGTTTATTATCTCA+TGG + chr4.4:33616210-33616229 MS.gene052342:intron 20.0%
! AAAACAAGTTAAGCAACTTA+CGG - chr4.4:33618381-33618400 None:intergenic 25.0%
! AAAACATATTTAGCAAGACT+GGG + chr4.4:33617585-33617604 MS.gene052342:intron 25.0%
! AATATTCACTATTGGAAGTT+AGG + chr4.4:33618147-33618166 MS.gene052342:intron 25.0%
! ATAAAATTTAGACACGCTTA+AGG - chr4.4:33616331-33616350 None:intergenic 25.0%
! ATGCTCTTAAGTATATTGAT+TGG + chr4.4:33617772-33617791 MS.gene052342:intron 25.0%
! CATTAGATACACAACTTAAT+TGG + chr4.4:33618269-33618288 MS.gene052342:intron 25.0%
! CCTAGATGCATTAATATAAT+AGG - chr4.4:33617128-33617147 None:intergenic 25.0%
! CCTATTATATTAATGCATCT+AGG + chr4.4:33617125-33617144 MS.gene052342:intron 25.0%
! CTCAGATGATGTTTATTTAT+GGG - chr4.4:33617352-33617371 None:intergenic 25.0%
! GAGATATCTTTCTTCAAAAA+TGG + chr4.4:33618622-33618641 MS.gene052342:CDS 25.0%
! GTATGGAATGAAAATTCAAT+TGG + chr4.4:33618568-33618587 MS.gene052342:intron 25.0%
! TAAAATTTAGACACGCTTAA+GGG - chr4.4:33616330-33616349 None:intergenic 25.0%
! TCTCAGATGATGTTTATTTA+TGG - chr4.4:33617353-33617372 None:intergenic 25.0%
! TTGAATGAGAGTAAATCAAA+TGG + chr4.4:33618889-33618908 MS.gene052342:CDS 25.0%
!! ACAGATACATTTTACAATAG+AGG - chr4.4:33617196-33617215 None:intergenic 25.0%
!! ACAGTTTGATAATAATCACA+AGG - chr4.4:33616154-33616173 None:intergenic 25.0%
!! CAAACCAAATTCTGATTTTT+CGG - chr4.4:33615956-33615975 None:intergenic 25.0%
!! TGAAGAAATAGAAAACCTTT+TGG - chr4.4:33617566-33617585 None:intergenic 25.0%
!! TGATCTTGATTTGATTCTAT+GGG + chr4.4:33617921-33617940 MS.gene052342:intron 25.0%
!! TTGATCTTGATTTGATTCTA+TGG + chr4.4:33617920-33617939 MS.gene052342:intron 25.0%
!!! ACATTTCTATCTTAGTCTTA+GGG + chr4.4:33617957-33617976 MS.gene052342:intron 25.0%
!!! CTGTTTTATGTTTTTGATGT+TGG + chr4.4:33616085-33616104 MS.gene052342:intron 25.0%
!!! TAATAACCGTTTTTTGTGAA+AGG + chr4.4:33616736-33616755 MS.gene052342:intron 25.0%
!!! TGAAAATCAAGTTGAAAATG+GGG + chr4.4:33618837-33618856 MS.gene052342:CDS 25.0%
!!! TGGTAAGGTTTATTTTTTGT+GGG - chr4.4:33616833-33616852 None:intergenic 25.0%
!!! TGTAAGTTGTATTTTGAGTA+TGG + chr4.4:33618551-33618570 MS.gene052342:intron 25.0%
!!! TTGCTTAACTTGTTTTAGAA+AGG + chr4.4:33618385-33618404 MS.gene052342:intron 25.0%
AAACAACATTTCAATCGTAG+AGG - chr4.4:33618474-33618493 None:intergenic 30.0%
AACTTCAGAAAAACAAGAGA+TGG - chr4.4:33617156-33617175 None:intergenic 30.0%
ACCACTAATACAATATGCAA+AGG + chr4.4:33617887-33617906 MS.gene052342:intron 30.0%
ACCTTTGCATATTGTATTAG+TGG - chr4.4:33617891-33617910 None:intergenic 30.0%
ACGTATATATGGACTTCATA+GGG - chr4.4:33616365-33616384 None:intergenic 30.0%
AGAAGAAAAATCCATACTGT+TGG + chr4.4:33617250-33617269 MS.gene052342:intron 30.0%
ATAGTTATTATTTAGGGGTG+GGG + chr4.4:33616241-33616260 MS.gene052342:intron 30.0%
ATATATTATCGGTGAAGAAC+AGG - chr4.4:33616676-33616695 None:intergenic 30.0%
ATGTCTCACTTATCGAAAAA+TGG - chr4.4:33617815-33617834 None:intergenic 30.0%
ATTAAACATGAGGTGTATCT+CGG - chr4.4:33616611-33616630 None:intergenic 30.0%
ATTCAGATTAAGGAACTCAA+TGG - chr4.4:33618122-33618141 None:intergenic 30.0%
CAAAACATATTTAGCAAGAC+TGG + chr4.4:33617584-33617603 MS.gene052342:intron 30.0%
CAAAATACAACTTACAGCAA+AGG - chr4.4:33618547-33618566 None:intergenic 30.0%
CAAGGAATATAGTTGTTCAA+TGG - chr4.4:33618501-33618520 None:intergenic 30.0%
CAGAAGAGAAGAAATCTTAA+TGG + chr4.4:33619106-33619125 MS.gene052342:CDS 30.0%
CGAAAAATCAGAATTTGGTT+TGG + chr4.4:33615954-33615973 MS.gene052342:CDS 30.0%
CTAAGACTAAGATAGAAATG+TGG - chr4.4:33617958-33617977 None:intergenic 30.0%
GAAGAAAAATCCATACTGTT+GGG + chr4.4:33617251-33617270 MS.gene052342:intron 30.0%
GATAAACATATCTTCATCTC+CGG - chr4.4:33615584-33615603 None:intergenic 30.0%
GATAGTTATTATTTAGGGGT+GGG + chr4.4:33616240-33616259 MS.gene052342:intron 30.0%
TACGTATATATGGACTTCAT+AGG - chr4.4:33616366-33616385 None:intergenic 30.0%
TCATACGAGCAAAAATCAAA+TGG + chr4.4:33618997-33619016 MS.gene052342:CDS 30.0%
TGTCTCACTTATCGAAAAAT+GGG - chr4.4:33617814-33617833 None:intergenic 30.0%
TGTTAATTCCATATCAACCA+CGG - chr4.4:33615102-33615121 None:intergenic 30.0%
TTCAAAAATGGTGTATGTCA+AGG + chr4.4:33618634-33618653 MS.gene052342:CDS 30.0%
TTCAGATTAAGGAACTCAAT+GGG - chr4.4:33618121-33618140 None:intergenic 30.0%
TTCCAACTCTTACGTATATA+TGG - chr4.4:33616376-33616395 None:intergenic 30.0%
TTGACTGAGAAGAAATCTAA+TGG + chr4.4:33618862-33618881 MS.gene052342:CDS 30.0%
TTGGATATAGGGATATTGAT+GGG + chr4.4:33615825-33615844 MS.gene052342:CDS 30.0%
TTTGGATATAGGGATATTGA+TGG + chr4.4:33615824-33615843 MS.gene052342:CDS 30.0%
! AGTATGGATTTTTCTTCTGA+TGG - chr4.4:33617248-33617267 None:intergenic 30.0%
! CACATTTCTATCTTAGTCTT+AGG + chr4.4:33617956-33617975 MS.gene052342:intron 30.0%
! CGAGTTTCTGAAAAAGATTA+AGG - chr4.4:33618001-33618020 None:intergenic 30.0%
! GTAACTGGATATTTTCTAGA+TGG - chr4.4:33616535-33616554 None:intergenic 30.0%
! TAAGATTCATAAGGCTTTGA+GGG + chr4.4:33615850-33615869 MS.gene052342:CDS 30.0%
! TGATTTTCAAAACCATGATG+AGG - chr4.4:33618826-33618845 None:intergenic 30.0%
! TGCACAGTTAAGTTCAATTT+TGG + chr4.4:33618733-33618752 MS.gene052342:CDS 30.0%
!! AGTTAAGTTCAATTTTGGTC+CGG + chr4.4:33618738-33618757 MS.gene052342:CDS 30.0%
!! ATATTGATTGGCTTAGTCAT+GGG + chr4.4:33617784-33617803 MS.gene052342:intron 30.0%
!! CAGAATTTGGTTTGGTATAA+AGG + chr4.4:33615962-33615981 MS.gene052342:CDS 30.0%
!! GTCTTTTATTTGTATTCTGC+CGG - chr4.4:33617278-33617297 None:intergenic 30.0%
!! TATATTGATTGGCTTAGTCA+TGG + chr4.4:33617783-33617802 MS.gene052342:intron 30.0%
!!! ATGGGAATAGTTTTGGATAT+AGG + chr4.4:33615813-33615832 MS.gene052342:CDS 30.0%
!!! ATTTTGAGATAAAGGTAGTG+AGG + chr4.4:33615717-33615736 MS.gene052342:CDS 30.0%
!!! GGTAAGGTTTATTTTTTGTG+GGG - chr4.4:33616832-33616851 None:intergenic 30.0%
!!! GTAAGGTTTATTTTTTGTGG+GGG - chr4.4:33616831-33616850 None:intergenic 30.0%
!!! GTGGTAAGGTTTATTTTTTG+TGG - chr4.4:33616834-33616853 None:intergenic 30.0%
!!! TGCTTGGTATTTTGAGATAA+AGG + chr4.4:33615709-33615728 MS.gene052342:CDS 30.0%
!!! TGGGAATAGTTTTGGATATA+GGG + chr4.4:33615814-33615833 MS.gene052342:CDS 30.0%
AAAATCAAATGGAGAGTCGA+AGG + chr4.4:33619008-33619027 MS.gene052342:CDS 35.0%
AACAATAACAACCACACGAA+CGG + chr4.4:33615497-33615516 MS.gene052342:CDS 35.0%
AACAATGTCTATAGCAGTGT+AGG + chr4.4:33616767-33616786 MS.gene052342:intron 35.0%
AACAGGACAAACTGGATTTA+AGG - chr4.4:33616659-33616678 None:intergenic 35.0%
ACTTGTACTACGAAACATTC+TGG + chr4.4:33616440-33616459 MS.gene052342:intron 35.0%
AGATAAAGGTAGTGAGGTTA+GGG + chr4.4:33615723-33615742 MS.gene052342:CDS 35.0%
ATCGGTCCTTTCACAAAAAA+CGG - chr4.4:33616745-33616764 None:intergenic 35.0%
ATGGTGAAGGTGATGTTATT+GGG + chr4.4:33615894-33615913 MS.gene052342:CDS 35.0%
ATTCACTATTGGAAGTTAGG+TGG + chr4.4:33618150-33618169 MS.gene052342:intron 35.0%
CATAACCAAGTTCACAATCA+AGG - chr4.4:33616303-33616322 None:intergenic 35.0%
CGATAGTTATTATTTAGGGG+TGG + chr4.4:33616239-33616258 MS.gene052342:intron 35.0%
CGTAAGAGTTGGAAATGTAT+TGG + chr4.4:33616382-33616401 MS.gene052342:intron 35.0%
CTGCACAGAAAAGAGAATAT+TGG - chr4.4:33618597-33618616 None:intergenic 35.0%
CTTGATTGTGAACTTGGTTA+TGG + chr4.4:33616301-33616320 MS.gene052342:intron 35.0%
GGTTCTTCTTCATCTTCATA+AGG - chr4.4:33615248-33615267 None:intergenic 35.0%
GTAAGATTCATAAGGCTTTG+AGG + chr4.4:33615849-33615868 MS.gene052342:CDS 35.0%
GTCCATATATACGTAAGAGT+TGG + chr4.4:33616371-33616390 MS.gene052342:intron 35.0%
TATGGTGAAGGTGATGTTAT+TGG + chr4.4:33615893-33615912 MS.gene052342:CDS 35.0%
TCCCTCATGATTTCAATGAA+CGG + chr4.4:33618773-33618792 MS.gene052342:CDS 35.0%
TCGACTGAGAAGAAATCAAA+TGG + chr4.4:33618943-33618962 MS.gene052342:CDS 35.0%
TGAAGAGGAAGATGAAGAAA+TGG + chr4.4:33614992-33615011 MS.gene052342:CDS 35.0%
TGAGAAGAAATCAGATGAAG+AGG + chr4.4:33619083-33619102 MS.gene052342:CDS 35.0%
TGATGGGAGTAAGATTCATA+AGG + chr4.4:33615841-33615860 MS.gene052342:CDS 35.0%
TGCTATAGACATTGTTCCAT+CGG - chr4.4:33616763-33616782 None:intergenic 35.0%
TGCTCCGAAAAATCAGAATT+TGG + chr4.4:33615949-33615968 MS.gene052342:CDS 35.0%
TGCTTATAATCCAGATGCTA+AGG + chr4.4:33615994-33616013 MS.gene052342:CDS 35.0%
TTCCTCTTCATCTTTGTATG+TGG - chr4.4:33614982-33615001 None:intergenic 35.0%
TTGACTGTGAAGAAATCAAC+AGG + chr4.4:33618916-33618935 MS.gene052342:CDS 35.0%
TTTCGGTGAATTCTTCTGTT+CGG - chr4.4:33615210-33615229 None:intergenic 35.0%
! AAAGGGGTATAGAATGGTTA+GGG + chr4.4:33615664-33615683 MS.gene052342:CDS 35.0%
! AAATTGGTTCTTCCTTGACA+GGG - chr4.4:33615307-33615326 None:intergenic 35.0%
! CAATATTCTCTTTTCTGTGC+AGG + chr4.4:33618595-33618614 MS.gene052342:intron 35.0%
! GGTTGTTCTCTTTTCTGTTT+CGG - chr4.4:33615227-33615246 None:intergenic 35.0%
! TGAAAACACCATCTAAAGCT+TGG + chr4.4:33617616-33617635 MS.gene052342:intron 35.0%
! TTTACAATAGAGGCACGAAA+TGG - chr4.4:33617186-33617205 None:intergenic 35.0%
!! GTCTATTTTGCTATGCAATG+TGG - chr4.4:33616868-33616887 None:intergenic 35.0%
!! TGGTTTGGTATAAAGGACAA+CGG + chr4.4:33615969-33615988 MS.gene052342:CDS 35.0%
!!! AACTGTGCAGTTTTGTTCAT+GGG - chr4.4:33618722-33618741 None:intergenic 35.0%
!!! TAACTGTGCAGTTTTGTTCA+TGG - chr4.4:33618723-33618742 None:intergenic 35.0%
AAAATCCATACTGTTGGGAC+CGG + chr4.4:33617256-33617275 MS.gene052342:intron 40.0%
AATTATGGGGATGAGGGTTA+TGG + chr4.4:33615875-33615894 MS.gene052342:CDS 40.0%
ACAAGAGAACAGAGCATGAA+AGG - chr4.4:33617008-33617027 None:intergenic 40.0%
ACAGAGCATGAAAGGAACTT+AGG - chr4.4:33617000-33617019 None:intergenic 40.0%
ACATCAATAGCGTGGAAAAG+TGG + chr4.4:33618201-33618220 MS.gene052342:intron 40.0%
AGAGTATACATTGAAGCAGC+AGG - chr4.4:33618697-33618716 None:intergenic 40.0%
AGCAGATTTGAAGACTAACC+AGG - chr4.4:33616040-33616059 None:intergenic 40.0%
AGCCACATACAAAGATGAAG+AGG + chr4.4:33614977-33614996 MS.gene052342:CDS 40.0%
ATGCAATGTGGTTCAGGAAT+GGG - chr4.4:33616856-33616875 None:intergenic 40.0%
ATGGTTGAAGTTCCTCATCA+TGG + chr4.4:33618811-33618830 MS.gene052342:CDS 40.0%
CATATTTAGCAAGACTGGGT+AGG + chr4.4:33617589-33617608 MS.gene052342:intron 40.0%
CATCTCTGTTGCAAGTTTCT+CGG - chr4.4:33617529-33617548 None:intergenic 40.0%
CTTTGCCAAGAAAGGAACTT+GGG - chr4.4:33617087-33617106 None:intergenic 40.0%
GAAAGTTGCTTCTGCTTCTT+CGG - chr4.4:33615275-33615294 None:intergenic 40.0%
GACTAACCAGGTACAACTTT+AGG - chr4.4:33616028-33616047 None:intergenic 40.0%
GAGATAAAGGTAGTGAGGTT+AGG + chr4.4:33615722-33615741 MS.gene052342:CDS 40.0%
GATAAAGGTAGTGAGGTTAG+GGG + chr4.4:33615724-33615743 MS.gene052342:CDS 40.0%
GCAGCGAAATAAGAAGAACA+CGG - chr4.4:33617064-33617083 None:intergenic 40.0%
GCCGTTCATTGAAATCATGA+GGG - chr4.4:33618777-33618796 None:intergenic 40.0%
GGAGATGAAATCAGATGAAG+AGG + chr4.4:33619029-33619048 MS.gene052342:CDS 40.0%
GTACAAGTGTTTGTAGTGTC+TGG - chr4.4:33616428-33616447 None:intergenic 40.0%
GTAGCTTTCAAAGACCTCTA+TGG + chr4.4:33618658-33618677 MS.gene052342:CDS 40.0%
TAACAGTTGTTCTGTACGCA+AGG - chr4.4:33618519-33618538 None:intergenic 40.0%
TAACCAGGTACAACTTTAGG+TGG - chr4.4:33616025-33616044 None:intergenic 40.0%
TAATTCCATATCAACCACGG+TGG - chr4.4:33615099-33615118 None:intergenic 40.0%
TAGCTCCTTGATTGTGAACT+TGG + chr4.4:33616295-33616314 MS.gene052342:intron 40.0%
TATGCAATGTGGTTCAGGAA+TGG - chr4.4:33616857-33616876 None:intergenic 40.0%
TGACAAAAGTGACGATACAC+CGG + chr4.4:33615562-33615581 MS.gene052342:CDS 40.0%
TGAGGGAAAAATTCGAAGTC+CGG - chr4.4:33618760-33618779 None:intergenic 40.0%
TGATGAGGAACTTCAACCAT+TGG - chr4.4:33618811-33618830 None:intergenic 40.0%
TGCAAGTTTCTCGGATGTAA+GGG - chr4.4:33617520-33617539 None:intergenic 40.0%
TTATTATTTAGGGGTGGGGA+GGG + chr4.4:33616245-33616264 MS.gene052342:intron 40.0%
TTCTGATAACACCAGTACAG+AGG + chr4.4:33615534-33615553 MS.gene052342:CDS 40.0%
TTGCAAGTTTCTCGGATGTA+AGG - chr4.4:33617521-33617540 None:intergenic 40.0%
TTTGCCAAGAAAGGAACTTG+GGG - chr4.4:33617086-33617105 None:intergenic 40.0%
! CAAAGGGGTATAGAATGGTT+AGG + chr4.4:33615663-33615682 MS.gene052342:CDS 40.0%
! GAAATTGGTTCTTCCTTGAC+AGG - chr4.4:33615308-33615327 None:intergenic 40.0%
! GAGATAGAAGTGTGACCAAA+AGG + chr4.4:33617548-33617567 MS.gene052342:intron 40.0%
! GTTCGTGTGGTTGTTATTGT+TGG - chr4.4:33615498-33615517 None:intergenic 40.0%
! TAAAGCCTCCCATGCATTTT+TGG + chr4.4:33617836-33617855 MS.gene052342:intron 40.0%
! TTTGCTATGCAATGTGGTTC+AGG - chr4.4:33616862-33616881 None:intergenic 40.0%
!! AAGGCTTTGAGGGAGAATTA+TGG + chr4.4:33615860-33615879 MS.gene052342:CDS 40.0%
!! AAGTTGAGTTGAGTGAGGAT+AGG + chr4.4:33615624-33615643 MS.gene052342:CDS 40.0%
!! AGGCTTTGAGGGAGAATTAT+GGG + chr4.4:33615861-33615880 MS.gene052342:CDS 40.0%
!! GGGTATGATGGGAATAGTTT+TGG + chr4.4:33615806-33615825 MS.gene052342:CDS 40.0%
!!! ACTGTGCAGTTTTGTTCATG+GGG - chr4.4:33618721-33618740 None:intergenic 40.0%
!!! AGGTTTATTTTTTGTGGGGG+TGG - chr4.4:33616828-33616847 None:intergenic 40.0%
!!! GGTTTATTTTTTGTGGGGGT+GGG - chr4.4:33616827-33616846 None:intergenic 40.0%
!!! GTTTATTTTTTGTGGGGGTG+GGG - chr4.4:33616826-33616845 None:intergenic 40.0%
!!! GTTTTTTGTGAAAGGACCGA+TGG + chr4.4:33616744-33616763 MS.gene052342:intron 40.0%
!!! TTTATTTTTTGTGGGGGTGG+GGG - chr4.4:33616825-33616844 None:intergenic 40.0%
AAAGCTTGGCAACCGTATGT+TGG + chr4.4:33617630-33617649 MS.gene052342:intron 45.0%
AACCACCAGCCAAAAATGCA+TGG - chr4.4:33617848-33617867 None:intergenic 45.0%
AAGCTTGGCAACCGTATGTT+GGG + chr4.4:33617631-33617650 MS.gene052342:intron 45.0%
AATAACAACCACACGAACGG+TGG + chr4.4:33615500-33615519 MS.gene052342:CDS 45.0%
AATGGTTAGGGCAACAAGAG+GGG + chr4.4:33615676-33615695 MS.gene052342:CDS 45.0%
ACCACCAGCCAAAAATGCAT+GGG - chr4.4:33617847-33617866 None:intergenic 45.0%
AGAATGGTTAGGGCAACAAG+AGG + chr4.4:33615674-33615693 MS.gene052342:CDS 45.0%
AGCAGATGCTTTGCCAAGAA+AGG - chr4.4:33617095-33617114 None:intergenic 45.0%
AGGGAGAATTATGGGGATGA+GGG + chr4.4:33615869-33615888 MS.gene052342:CDS 45.0%
AGTGAGGATAGGTTAAGTGC+AGG + chr4.4:33615635-33615654 MS.gene052342:CDS 45.0%
ATCCCAAGAACCAACTATCC+GGG + chr4.4:33618027-33618046 MS.gene052342:intron 45.0%
ATGTGATTGCAAGCCCTAGT+TGG - chr4.4:33616901-33616920 None:intergenic 45.0%
CATCCCAAGAACCAACTATC+CGG + chr4.4:33618026-33618045 MS.gene052342:intron 45.0%
CGGCAACTCAGATCAAAAAC+AGG - chr4.4:33617044-33617063 None:intergenic 45.0%
CTATTCCCATCATACCCAAC+TGG - chr4.4:33615803-33615822 None:intergenic 45.0%
CTGTTCTCTTGTGCATTTGC+TGG + chr4.4:33617016-33617035 MS.gene052342:intron 45.0%
GAAATCAGATGAAGAGGCGA+AGG + chr4.4:33619035-33619054 MS.gene052342:CDS 45.0%
GAATGGTTAGGGCAACAAGA+GGG + chr4.4:33615675-33615694 MS.gene052342:CDS 45.0%
GATCCACCTAAAGTTGTACC+TGG + chr4.4:33616019-33616038 MS.gene052342:CDS 45.0%
GCAAGTTTCTCGGATGTAAG+GGG - chr4.4:33617519-33617538 None:intergenic 45.0%
GCTTTCAAAGACCTCTATGG+CGG + chr4.4:33618661-33618680 MS.gene052342:CDS 45.0%
GCTTTGCCAAGAAAGGAACT+TGG - chr4.4:33617088-33617107 None:intergenic 45.0%
GGAAGAACCAATTTCGTTGC+CGG + chr4.4:33615313-33615332 MS.gene052342:CDS 45.0%
GGAGCAAACTTATCTCCATC+AGG - chr4.4:33615935-33615954 None:intergenic 45.0%
GGCCGTTCATTGAAATCATG+AGG - chr4.4:33618778-33618797 None:intergenic 45.0%
GGCTTTGCCATGGTTTCAAT+TGG - chr4.4:33618085-33618104 None:intergenic 45.0%
GTGAGGATAGGTTAAGTGCA+GGG + chr4.4:33615636-33615655 MS.gene052342:CDS 45.0%
GTTATTATTTAGGGGTGGGG+AGG + chr4.4:33616244-33616263 MS.gene052342:intron 45.0%
TTAACCTCCGGCAACGAAAT+TGG - chr4.4:33615323-33615342 None:intergenic 45.0%
TTCTAGATGGTGAGTTGCGT+GGG - chr4.4:33616522-33616541 None:intergenic 45.0%
TTGCAATCACATGCATCTGC+TGG + chr4.4:33616909-33616928 MS.gene052342:intron 45.0%
TTGTCAGGAAACCTCTGTAC+TGG - chr4.4:33615548-33615567 None:intergenic 45.0%
TTTCTAGATGGTGAGTTGCG+TGG - chr4.4:33616523-33616542 None:intergenic 45.0%
! AATGGAGAAGGGTGATTTGC+AGG + chr4.4:33615775-33615794 MS.gene052342:CDS 45.0%
! AGGAACTTCAACCATTGGCT+TGG - chr4.4:33618806-33618825 None:intergenic 45.0%
! ATGTAAGGGGTGGAAGCTTT+TGG - chr4.4:33617506-33617525 None:intergenic 45.0%
! GAGCACAAAGGGGTATAGAA+TGG + chr4.4:33615658-33615677 MS.gene052342:CDS 45.0%
! GTTGTTGTTGTGACGGTTGA+AGG - chr4.4:33615023-33615042 None:intergenic 45.0%
! TTAAGTGCAGGGAGCACAAA+GGG + chr4.4:33615647-33615666 MS.gene052342:CDS 45.0%
!! GGAACTTCAACCATTGGCTT+GGG - chr4.4:33618805-33618824 None:intergenic 45.0%
!! GGAGAAAGTTGAGTTGAGTG+AGG + chr4.4:33615619-33615638 MS.gene052342:CDS 45.0%
!! GGCTTTGAGGGAGAATTATG+GGG + chr4.4:33615862-33615881 MS.gene052342:CDS 45.0%
!! TACGGTTGCCAAGCTTTAGA+TGG - chr4.4:33617627-33617646 None:intergenic 45.0%
!! TCAACCATTGGCTTGGGAAT+TGG - chr4.4:33618799-33618818 None:intergenic 45.0%
!! TTGGGTTGGACAATGGAGAA+GGG + chr4.4:33615764-33615783 MS.gene052342:CDS 45.0%
!!! GGTGTATCGTCACTTTTGTC+AGG - chr4.4:33615563-33615582 None:intergenic 45.0%
!!! TGCTGGTGTCATCTTTTCTC+TGG + chr4.4:33616926-33616945 MS.gene052342:intron 45.0%
!!! TTATTTTTTGTGGGGGTGGG+GGG - chr4.4:33616824-33616843 None:intergenic 45.0%
AACCATGGCAAAGCCCTGTA+TGG + chr4.4:33618090-33618109 MS.gene052342:intron 50.0%
AATTCCGGCTACAACCACAC+CGG + chr4.4:33615364-33615383 MS.gene052342:CDS 50.0%
ACCAGCCAAAAATGCATGGG+AGG - chr4.4:33617844-33617863 None:intergenic 50.0%
AGAACCAATTTCGTTGCCGG+AGG + chr4.4:33615316-33615335 MS.gene052342:CDS 50.0%
AGACCCACTCTTCACCAACT+AGG + chr4.4:33616884-33616903 MS.gene052342:intron 50.0%
AGCTTGGCAACCGTATGTTG+GGG + chr4.4:33617632-33617651 MS.gene052342:intron 50.0%
AGGCACCAGTTGGGTATGAT+GGG + chr4.4:33615795-33615814 MS.gene052342:CDS 50.0%
AGTTTCTCGGATGTAAGGGG+TGG - chr4.4:33617516-33617535 None:intergenic 50.0%
CAATGTGGTTCAGGAATGGG+TGG - chr4.4:33616853-33616872 None:intergenic 50.0%
CGGTGAAGAACAGGACAAAC+TGG - chr4.4:33616667-33616686 None:intergenic 50.0%
CTACGACATCCAGAGAGAAC+AGG + chr4.4:33617389-33617408 MS.gene052342:intron 50.0%
GACCCACTCTTCACCAACTA+GGG + chr4.4:33616885-33616904 MS.gene052342:intron 50.0%
GAGGGAGAATTATGGGGATG+AGG + chr4.4:33615868-33615887 MS.gene052342:CDS 50.0%
GATAGTAACGACCGCCATAG+AGG - chr4.4:33618675-33618694 None:intergenic 50.0%
GCAGCAGCATTGTTAACCTC+CGG - chr4.4:33615335-33615354 None:intergenic 50.0%
GGAGGGTGGGGAATATATGA+AGG - chr4.4:33616803-33616822 None:intergenic 50.0%
GGATGGGAACATCAATAGCG+TGG + chr4.4:33618193-33618212 MS.gene052342:intron 50.0%
GGTGGATCTTCCTTAGCATC+TGG - chr4.4:33616007-33616026 None:intergenic 50.0%
TAGTGAGGTTAGGGGAGAGT+GGG + chr4.4:33615732-33615751 MS.gene052342:CDS 50.0%
TATCTTCTCCACCGTTCGTG+TGG - chr4.4:33615511-33615530 None:intergenic 50.0%
TCAATGGGCCAGTCCATACA+GGG - chr4.4:33618106-33618125 None:intergenic 50.0%
TCCCAAGAACCAACTATCCG+GGG + chr4.4:33618028-33618047 MS.gene052342:intron 50.0%
TCCCTCCAACGACGGAAAAT+CGG + chr4.4:33615148-33615167 MS.gene052342:CDS 50.0%
TCTAGATGGTGAGTTGCGTG+GGG - chr4.4:33616521-33616540 None:intergenic 50.0%
TCTCTCTCTCCTGTTCTCTC+TGG - chr4.4:33617401-33617420 None:intergenic 50.0%
TGCTGCTGCTGTGTCAATTC+CGG + chr4.4:33615349-33615368 MS.gene052342:CDS 50.0%
TGCTTCTGCTTCTTCGGAAG+CGG - chr4.4:33615269-33615288 None:intergenic 50.0%
TGGTTCAGGAATGGGTGGTA+AGG - chr4.4:33616848-33616867 None:intergenic 50.0%
TTCCCATCCCAAGCAGTCAA+TGG - chr4.4:33618182-33618201 None:intergenic 50.0%
TTCCTCTCTGAACCCTGTCA+AGG + chr4.4:33615292-33615311 MS.gene052342:CDS 50.0%
TTCCTTGACAGGGTTCAGAG+AGG - chr4.4:33615297-33615316 None:intergenic 50.0%
! CGGATAGTTGGTTCTTGGGA+TGG - chr4.4:33618028-33618047 None:intergenic 50.0%
! GAGTTCCGATTTTCCGTCGT+TGG - chr4.4:33615156-33615175 None:intergenic 50.0%
! GGGTGCAGTTGTTGTTGTGA+CGG - chr4.4:33615030-33615049 None:intergenic 50.0%
! GTGATTTGCAGGCACCAGTT+GGG + chr4.4:33615786-33615805 MS.gene052342:CDS 50.0%
! GTTAAGTGCAGGGAGCACAA+AGG + chr4.4:33615646-33615665 MS.gene052342:CDS 50.0%
! TAAGTGCAGGGAGCACAAAG+GGG + chr4.4:33615648-33615667 MS.gene052342:CDS 50.0%
! TCCGATTTTCCGTCGTTGGA+GGG - chr4.4:33615152-33615171 None:intergenic 50.0%
! TGTCTCCACCGTGGTTGATA+TGG + chr4.4:33615091-33615110 MS.gene052342:CDS 50.0%
! TTCCGATTTTCCGTCGTTGG+AGG - chr4.4:33615153-33615172 None:intergenic 50.0%
!! AAGCCCTAGTTGGTGAAGAG+TGG - chr4.4:33616891-33616910 None:intergenic 50.0%
!! AGCCCTAGTTGGTGAAGAGT+GGG - chr4.4:33616890-33616909 None:intergenic 50.0%
!! GTTGGGTTGGACAATGGAGA+AGG + chr4.4:33615763-33615782 MS.gene052342:CDS 50.0%
!!! TCCCATGCATTTTTGGCTGG+TGG + chr4.4:33617843-33617862 MS.gene052342:intron 50.0%
ACGGCCAATTCCCAAGCCAA+TGG + chr4.4:33618792-33618811 MS.gene052342:CDS 55.0%
AGAGTCGTCGGAGGGTTCAT+CGG - chr4.4:33615186-33615205 None:intergenic 55.0%
AGGTGTATCTCGGCCGTATC+TGG - chr4.4:33616601-33616620 None:intergenic 55.0%
ATCAACCACGGTGGAGACAG+CGG - chr4.4:33615090-33615109 None:intergenic 55.0%
CAACCGTATGTTGGGGGTGA+GGG + chr4.4:33617639-33617658 MS.gene052342:intron 55.0%
CAGGCACCAGTTGGGTATGA+TGG + chr4.4:33615794-33615813 MS.gene052342:CDS 55.0%
CCCAAGAACCAACTATCCGG+GGG + chr4.4:33618029-33618048 MS.gene052342:intron 55.0%
CCGAAGCCACTCACCAGATA+CGG + chr4.4:33616585-33616604 MS.gene052342:intron 55.0%
CCGTATCTGGTGAGTGGCTT+CGG - chr4.4:33616588-33616607 None:intergenic 55.0%
CGTATCTGGTGAGTGGCTTC+GGG - chr4.4:33616587-33616606 None:intergenic 55.0%
CTCAATGGGCCAGTCCATAC+AGG - chr4.4:33618107-33618126 None:intergenic 55.0%
CTTCTGTTCGGCAGAGTCGT+CGG - chr4.4:33615198-33615217 None:intergenic 55.0%
GCTGCCCCAAGTTCCTTTCT+TGG + chr4.4:33617079-33617098 MS.gene052342:intron 55.0%
GCTTGGCAACCGTATGTTGG+GGG + chr4.4:33617633-33617652 MS.gene052342:intron 55.0%
GGAGTGGCGGTAGTAATGAG+AGG - chr4.4:33615131-33615150 None:intergenic 55.0%
GGGGATGAGGGTTATGGTGA+AGG + chr4.4:33615881-33615900 MS.gene052342:CDS 55.0%
GTAGTGAGGTTAGGGGAGAG+TGG + chr4.4:33615731-33615750 MS.gene052342:CDS 55.0%
GTCCATACAGGGCTTTGCCA+TGG - chr4.4:33618095-33618114 None:intergenic 55.0%
GTTGTCGCTGTTCCATTCGC+CGG - chr4.4:33615386-33615405 None:intergenic 55.0%
TAGGGCAACAAGAGGGGTAG+TGG + chr4.4:33615682-33615701 MS.gene052342:CDS 55.0%
TGGCAAAGCCCTGTATGGAC+TGG + chr4.4:33618095-33618114 MS.gene052342:intron 55.0%
TTCTGCCGGTCCCAACAGTA+TGG - chr4.4:33617264-33617283 None:intergenic 55.0%
! CCCCCGGATAGTTGGTTCTT+GGG - chr4.4:33618032-33618051 None:intergenic 55.0%
! CGCCATTGACTGCTTGGGAT+GGG + chr4.4:33618177-33618196 MS.gene052342:intron 55.0%
! GGTGATTTGCAGGCACCAGT+TGG + chr4.4:33615785-33615804 MS.gene052342:CDS 55.0%
! GTGCTCGCCATTGACTGCTT+GGG + chr4.4:33618172-33618191 MS.gene052342:intron 55.0%
! TCCCCCGGATAGTTGGTTCT+TGG - chr4.4:33618033-33618052 None:intergenic 55.0%
! TCGCCATTGACTGCTTGGGA+TGG + chr4.4:33618176-33618195 MS.gene052342:intron 55.0%
! TTTTCCGTCGTTGGAGGGAG+TGG - chr4.4:33615147-33615166 None:intergenic 55.0%
!! GCAACAAGAGGGGTAGTGGA+AGG + chr4.4:33615686-33615705 MS.gene052342:CDS 55.0%
!! TACGCGGTTGGGTTGGACAA+TGG + chr4.4:33615757-33615776 MS.gene052342:CDS 55.0%
!!! GCCTCCCATGCATTTTTGGC+TGG + chr4.4:33617840-33617859 MS.gene052342:intron 55.0%
ATTTAGGGGTGGGGAGGGTG+AGG + chr4.4:33616250-33616269 MS.gene052342:intron 60.0%
GAGAGTGGGCATACGCGGTT+GGG + chr4.4:33615746-33615765 MS.gene052342:CDS 60.0%
GCAACCGTATGTTGGGGGTG+AGG + chr4.4:33617638-33617657 MS.gene052342:intron 60.0%
GCTACAACCACACCGGCGAA+TGG + chr4.4:33615371-33615390 MS.gene052342:CDS 60.0%
GGGGGGGCCAATTGAAACCA+TGG + chr4.4:33618075-33618094 MS.gene052342:intron 60.0%
GGTGGAGGAAGCAGGTGGTT+CGG - chr4.4:33615057-33615076 None:intergenic 60.0%
TAGGGGAGAGTGGGCATACG+CGG + chr4.4:33615741-33615760 MS.gene052342:CDS 60.0%
TCAACCACGGTGGAGACAGC+GGG - chr4.4:33615089-33615108 None:intergenic 60.0%
TCGTCGGAGGGTTCATCGGA+GGG - chr4.4:33615182-33615201 None:intergenic 60.0%
TCTCGGCCGTATCTGGTGAG+TGG - chr4.4:33616594-33616613 None:intergenic 60.0%
TGTTCGGCAGAGTCGTCGGA+GGG - chr4.4:33615194-33615213 None:intergenic 60.0%
TTCGCCGGTGTGGTTGTAGC+CGG - chr4.4:33615371-33615390 None:intergenic 60.0%
! GAGGGCGCAATTGGCAGATG+AGG + chr4.4:33617657-33617676 MS.gene052342:intron 60.0%
! GGTGCTCGCCATTGACTGCT+TGG + chr4.4:33618171-33618190 MS.gene052342:intron 60.0%
! GGTTGGTTCCCCCGGATAGT+TGG - chr4.4:33618040-33618059 None:intergenic 60.0%
! TTTTTGTGGGGGTGGGGGGA+GGG - chr4.4:33616820-33616839 None:intergenic 60.0%
!! GAGGGGTAGTGGAAGGTGCT+TGG + chr4.4:33615693-33615712 MS.gene052342:CDS 60.0%
!!! TTTTTTGTGGGGGTGGGGGG+AGG - chr4.4:33616821-33616840 None:intergenic 60.0%
AACCCCGCCATCCACTAGCG+GGG + chr4.4:33618056-33618075 MS.gene052342:intron 65.0%
ACCGCCACTCCCTCCAACGA+CGG + chr4.4:33615140-33615159 MS.gene052342:CDS 65.0%
CAACCCCGCCATCCACTAGC+GGG + chr4.4:33618055-33618074 MS.gene052342:intron 65.0%
CCAACCCCGCCATCCACTAG+CGG + chr4.4:33618054-33618073 MS.gene052342:intron 65.0%
CGCTGTTCCATTCGCCGGTG+TGG - chr4.4:33615381-33615400 None:intergenic 65.0%
CTGTTCGGCAGAGTCGTCGG+AGG - chr4.4:33615195-33615214 None:intergenic 65.0%
GCGCCCTCACCCCCAACATA+CGG - chr4.4:33617645-33617664 None:intergenic 65.0%
GGAGACAGCGGGTGGTTCGA+CGG - chr4.4:33615078-33615097 None:intergenic 65.0%
GGAGAGTGGGCATACGCGGT+TGG + chr4.4:33615745-33615764 MS.gene052342:CDS 65.0%
GGGTGGGGAGGGTGAGGATT+TGG + chr4.4:33616256-33616275 MS.gene052342:intron 65.0%
GGTTCGACGGTGGAGGAAGC+AGG - chr4.4:33615065-33615084 None:intergenic 65.0%
GTCGTCGGAGGGTTCATCGG+AGG - chr4.4:33615183-33615202 None:intergenic 65.0%
GTGGGCATACGCGGTTGGGT+TGG + chr4.4:33615750-33615769 MS.gene052342:CDS 65.0%
TCAATTGGCCCCCCCGCTAG+TGG - chr4.4:33618070-33618089 None:intergenic 65.0%
TCCGTCGTTGGAGGGAGTGG+CGG - chr4.4:33615144-33615163 None:intergenic 65.0%
TCGACGGTGGAGGAAGCAGG+TGG - chr4.4:33615062-33615081 None:intergenic 65.0%
! GAAGCAGGTGGTTCGGCGGA+GGG - chr4.4:33615050-33615069 None:intergenic 65.0%
! GGAGGAAGCAGGTGGTTCGG+CGG - chr4.4:33615054-33615073 None:intergenic 65.0%
! GTTGGGGGTGAGGGCGCAAT+TGG + chr4.4:33617648-33617667 MS.gene052342:intron 65.0%
ACCACCCGCTGTCTCCACCG+TGG + chr4.4:33615082-33615101 MS.gene052342:CDS 70.0%
ACCACGGTGGAGACAGCGGG+TGG - chr4.4:33615086-33615105 None:intergenic 70.0%
ACCCCGCCATCCACTAGCGG+GGG + chr4.4:33618057-33618076 MS.gene052342:intron 70.0%
AGCGGGTGGTTCGACGGTGG+AGG - chr4.4:33615072-33615091 None:intergenic 70.0%
GACAGCGGGTGGTTCGACGG+TGG - chr4.4:33615075-33615094 None:intergenic 70.0%
TTGGCCCCCCCGCTAGTGGA+TGG - chr4.4:33618066-33618085 None:intergenic 70.0%
! GGAAGCAGGTGGTTCGGCGG+AGG - chr4.4:33615051-33615070 None:intergenic 70.0%
!! CCGCTAGTGGATGGCGGGGT+TGG - chr4.4:33618057-33618076 None:intergenic 70.0%
!! GATGGCGGGGTTGGTTCCCC+CGG - chr4.4:33618048-33618067 None:intergenic 70.0%
CCCCGCCATCCACTAGCGGG+GGG + chr4.4:33618058-33618077 MS.gene052342:intron 75.0%
CCCGCCATCCACTAGCGGGG+GGG + chr4.4:33618059-33618078 MS.gene052342:intron 75.0%
TGTGGGGGTGGGGGGAGGGT+GGG - chr4.4:33616816-33616835 None:intergenic 75.0%
TTGTGGGGGTGGGGGGAGGG+TGG - chr4.4:33616817-33616836 None:intergenic 75.0%
! CCCCCCCGCTAGTGGATGGC+GGG - chr4.4:33618062-33618081 None:intergenic 75.0%
! CCCCCCGCTAGTGGATGGCG+GGG - chr4.4:33618061-33618080 None:intergenic 75.0%
! GCCCCCCCGCTAGTGGATGG+CGG - chr4.4:33618063-33618082 None:intergenic 75.0%
! GTGGGGGTGGGGGGAGGGTG+GGG - chr4.4:33616815-33616834 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 33614963 33619125 33614963 ID=MS.gene052342
chr4.4 mRNA 33614963 33619125 33614963 ID=MS.gene052342.t1;Parent=MS.gene052342
chr4.4 exon 33614963 33616040 33614963 ID=MS.gene052342.t1.exon1;Parent=MS.gene052342.t1
chr4.4 CDS 33614963 33616040 33614963 ID=cds.MS.gene052342.t1;Parent=MS.gene052342.t1
chr4.4 exon 33618617 33619125 33618617 ID=MS.gene052342.t1.exon2;Parent=MS.gene052342.t1
chr4.4 CDS 33618617 33619125 33618617 ID=cds.MS.gene052342.t1;Parent=MS.gene052342.t1
Gene Sequence

>MS.gene052342

ATGGATACACTTCAAGCCACATACAAAGATGAAGAGGAAGATGAAGAAATGGTACAACCTTCAACCGTCACAACAACAACTGCACCCTCCGCCGAACCACCTGCTTCCTCCACCGTCGAACCACCCGCTGTCTCCACCGTGGTTGATATGGAATTAACAGACGCGCCTCTCATTACTACCGCCACTCCCTCCAACGACGGAAAATCGGAACTCGATCCCTCCGATGAACCCTCCGACGACTCTGCCGAACAGAAGAATTCACCGAAACAGAAAAGAGAACAACCTTATGAAGATGAAGAAGAACCGCTTCCGAAGAAGCAGAAGCAACTTTCCTCTCTGAACCCTGTCAAGGAAGAACCAATTTCGTTGCCGGAGGTTAACAATGCTGCTGCTGCTGTGTCAATTCCGGCTACAACCACACCGGCGAATGGAACAGCGACAACGAAGAAAACGAAGAAAAAGAATAACAATGTATGGGCAACAAAATCGAAGAAAAAGACGAAGAAAAACAAAAACAACAACAACGGCAACACCAACAATAACAACCACACGAACGGTGGAGAAGATAGTGTTCTGATAACACCAGTACAGAGGTTTCCTGACAAAAGTGACGATACACCGGAGATGAAGATATGTTTATCAAAAGTTTACAAAGCGGAGAAAGTTGAGTTGAGTGAGGATAGGTTAAGTGCAGGGAGCACAAAGGGGTATAGAATGGTTAGGGCAACAAGAGGGGTAGTGGAAGGTGCTTGGTATTTTGAGATAAAGGTAGTGAGGTTAGGGGAGAGTGGGCATACGCGGTTGGGTTGGACAATGGAGAAGGGTGATTTGCAGGCACCAGTTGGGTATGATGGGAATAGTTTTGGATATAGGGATATTGATGGGAGTAAGATTCATAAGGCTTTGAGGGAGAATTATGGGGATGAGGGTTATGGTGAAGGTGATGTTATTGGGTTTTATATTAATTTGCCTGATGGAGATAAGTTTGCTCCGAAAAATCAGAATTTGGTTTGGTATAAAGGACAACGGTATGCTTATAATCCAGATGCTAAGGAAGATCCACCTAAAGTTGTACCTGGTTAGTCTTCAAATCTGCTTTTTTGTTTGTATGTTTTTGTTTTGCTGTTTTATGTTTTTGATGTTGGAATTTTGAACATTATTGATAGGGCATGTTTGTTTGATTTGATACCTTGTGATTATTATCAAACTGTAGAGTAGAGTGTAGATGTTAGATACTGATAATTTGTTTTTCTAGTTTATTATCTCATGGCTAAATCGATAGTTATTATTTAGGGGTGGGGAGGGTGAGGATTTGGATTGAGAAACAGTTTTTAGCTCCTTGATTGTGAACTTGGTTATGGAATCCCTTAAGCGTGTCTAAATTTTATAGTCAGTGAAACCCTATGAAGTCCATATATACGTAAGAGTTGGAAATGTATTGGTGTCTGACACGTATCTAAAACCAGACACTACAAACACTTGTACTACGAAACATTCTGGTACTCATCTAGAAAGTATCCAGTTACTTTTTCATGTTTTTTTACTGAAAATATTTCCCCACGCAACTCACCATCTAGAAAATATCCAGTTACTTTTTCACATTTTTTTACTGAAAATATTTCCCGAAGCCACTCACCAGATACGGCCGAGATACACCTCATGTTTAATATATTTACAAAGCTTATGTCATGTTCCTTAAATCCAGTTTGTCCTGTTCTTCACCGATAATATATAAAAAGGTATACTATGCAACTGCCATATTATATCTGTTGATAATAACCGTTTTTTGTGAAAGGACCGATGGAACAATGTCTATAGCAGTGTAGGTAAGTTTTATCCTTCATATATTCCCCACCCTCCCCCCACCCCCACAAAAAATAAACCTTACCACCCATTCCTGAACCACATTGCATAGCAAAATAGACCCACTCTTCACCAACTAGGGCTTGCAATCACATGCATCTGCTGGTGTCATCTTTTCTCTGGTTTGCACACACTTCTTGCTCAATTGACGTGTCTCTCATCACAACAAGTCCTAAGTTCCTTTCATGCTCTGTTCTCTTGTGCATTTGCTGGTGCCTGTTTTTGATCTGAGTTGCCGTGTTCTTCTTATTTCGCTGCCCCAAGTTCCTTTCTTGGCAAAGCATCTGCTGAGTTGCTTTCCTATTATATTAATGCATCTAGGATTTGCCATCTCTTGTTTTTCTGAAGTTTCATGTACCATTTCGTGCCTCTATTGTAAAATGTATCTGTGCTTTGTAGAGACTAAATATTGTGAAATTCCATCAGAAGAAAAATCCATACTGTTGGGACCGGCAGAATACAAATAAAAGACGTTAACAACTTAGATGAAGAACAAGAATGTAATAGAAACATGTTTTTTGCACCCATAAATAAACATCATCTGAGATTTGATAAAACAGAGACTACGACATCCAGAGAGAACAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGACTTGAGAGAAAAGATGAGAGACTATGTCCAAAAGCTTCCACCCCTTACATCCGAGAAACTTGCAACAGAGATGAGATAGAAGTGTGACCAAAAGGTTTTCTATTTCTTCAAAACATATTTAGCAAGACTGGGTAGGATTATGAAAACACCATCTAAAGCTTGGCAACCGTATGTTGGGGGTGAGGGCGCAATTGGCAGATGAGGAAATTTCTTCAAAATATATTTTTCGTTTTTTAATACTTTTTCAAATGATAATACATTCAAATCTACTGAATGCTGTGTTATTTTATCGATAAATGCTCTTAAGTATATTGATTGGCTTAGTCATGGGTATGCCCATTTTTCGATAAGTGAGACATCTAAAGCCTCCCATGCATTTTTGGCTGGTGGTTAGAGTTGTCAGACAGTAAAACCACTAATACAATATGCAAAGGTGATCGTAATTTGATCTTGATTTGATTCTATGGGCAATGCTGCTGCCACATTTCTATCTTAGTCTTAGGGTATGTAGCAATTTGAATTCCTTAATCTTTTTCAGAAACTCGATATCCATCCCAAGAACCAACTATCCGGGGGAACCAACCCCGCCATCCACTAGCGGGGGGGCCAATTGAAACCATGGCAAAGCCCTGTATGGACTGGCCCATTGAGTTCCTTAATCTGAATATCTGAATATTCACTATTGGAAGTTAGGTGGTGCTCGCCATTGACTGCTTGGGATGGGAACATCAATAGCGTGGAAAAGTGGATACTGTCAGAGCCCATTAGTCATAAATTCATAATATATAGGGTGCATTAGATACACAACTTAATTGGGCGCTTGTTTTTTTAATTGCTTATGTACATATAGTTGTAAAATAAATGAGAGAAAAATTCTGCTTTGAACTGTGTATGAACTGCTTCCGTAAGTTGCTTAACTTGTTTTAGAAAGGTCGTGAAAATAAGCTGAAAACAATTAATAGAATACAGTTAACTATTTTCATAAGCTCTTCATACCTCTACGATTGAAATGTTGTTTATGACCATTGAACAACTATATTCCTTGCGTACAGAACAACTGTTACATTTCCTTTGCTGTAAGTTGTATTTTGAGTATGGAATGAAAATTCAATTGGTTTCCAATATTCTCTTTTCTGTGCAGGAAGTGAGATATCTTTCTTCAAAAATGGTGTATGTCAAGGCGTAGCTTTCAAAGACCTCTATGGCGGTCGTTACTATCCTGCTGCTTCAATGTATACTCTTCCCCATGAACAAAACTGCACAGTTAAGTTCAATTTTGGTCCGGACTTCGAATTTTTCCCTCATGATTTCAATGAACGGCCAATTCCCAAGCCAATGGTTGAAGTTCCTCATCATGGTTTTGAAAATCAAGTTGAAAATGGGGCGTTGACTGAGAAGAAATCTAATGGAGAGTTGAATGAGAGTAAATCAAATGGAGAGTTGACTGTGAAGAAATCAACAGGAGAGTCGACTGAGAAGAAATCAAATGGAGAGTCGACTGAGAAGAAATCAAATGGAGAGTCATACGAGCAAAAATCAAATGGAGAGTCGAAGGAGATGAAATCAGATGAAGAGGCGAAGGAGAAGAAATCAGATGAAGAGTTGAATGAGAAGAAATCAGATGAAGAGGCAGAAGAGAAGAAATCTTAA

Protein sequence

>MS.gene052342.t1

MDTLQATYKDEEEDEEMVQPSTVTTTTAPSAEPPASSTVEPPAVSTVVDMELTDAPLITTATPSNDGKSELDPSDEPSDDSAEQKNSPKQKREQPYEDEEEPLPKKQKQLSSLNPVKEEPISLPEVNNAAAAVSIPATTTPANGTATTKKTKKKNNNVWATKSKKKTKKNKNNNNGNTNNNNHTNGGEDSVLITPVQRFPDKSDDTPEMKICLSKVYKAEKVELSEDRLSAGSTKGYRMVRATRGVVEGAWYFEIKVVRLGESGHTRLGWTMEKGDLQAPVGYDGNSFGYRDIDGSKIHKALRENYGDEGYGEGDVIGFYINLPDGDKFAPKNQNLVWYKGQRYAYNPDAKEDPPKVVPGSEISFFKNGVCQGVAFKDLYGGRYYPAASMYTLPHEQNCTVKFNFGPDFEFFPHDFNERPIPKPMVEVPHHGFENQVENGALTEKKSNGELNESKSNGELTVKKSTGESTEKKSNGESTEKKSNGESYEQKSNGESKEMKSDEEAKEKKSDEELNEKKSDEEAEEKKS