Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43238.t1 | GAU19862.1 | 39.5 | 496 | 137 | 8 | 1 | 358 | 8 | 478 | 4.70E-73 | 285 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43238.t1 | A0A2Z6LNV0 | 39.5 | 496 | 137 | 8 | 1 | 358 | 8 | 478 | 3.4e-73 | 285.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene06044 | MS.gene43238 | 0.811906 | 5.54E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43238.t1 | MTR_1g054775 | 40.625 | 96 | 52 | 2 | 1 | 92 | 225 | 319 | 1.17e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 79 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATATTAAGGATAGTATTT+TGG | 0.122835 | 8.4:+19875757 | None:intergenic |
| CTAGAACTTCTCATCATAAA+AGG | 0.199092 | 8.4:-19875371 | MS.gene43238:CDS |
| TATCATTCACGTGTCCTTTA+TGG | 0.205840 | 8.4:+19875706 | None:intergenic |
| GGTAATGTTAACGACTTTAA+TGG | 0.233011 | 8.4:-19875810 | MS.gene43238:CDS |
| TTAATCTCTCCACCATATTA+AGG | 0.233916 | 8.4:+19875745 | None:intergenic |
| GGCCCAACTCCATCATTTCT+TGG | 0.260591 | 8.4:+19875636 | None:intergenic |
| CCAAAATACTATCCTTAATA+TGG | 0.273326 | 8.4:-19875757 | MS.gene43238:CDS |
| ATTTCTTTCTCCAGCATTAG+AGG | 0.273717 | 8.4:+19875453 | None:intergenic |
| TACAGCAACACAAAGCAAAA+TGG | 0.278921 | 8.4:-19875541 | MS.gene43238:CDS |
| AGAATCGCATGGAGTGAATA+AGG | 0.281115 | 8.4:-19875571 | MS.gene43238:CDS |
| AACGATGACAACCATGTTAA+TGG | 0.283255 | 8.4:-19876789 | MS.gene43238:CDS |
| GATAGGAAACCAGGTCTTAA+TGG | 0.299967 | 8.4:-19876727 | MS.gene43238:CDS |
| TTGAGCTTGTTCAAGGAAAT+AGG | 0.303927 | 8.4:-19876662 | MS.gene43238:CDS |
| ATCATTCACGTGTCCTTTAT+GGG | 0.322436 | 8.4:+19875707 | None:intergenic |
| ATGTTAGTTTATAAACATAT+TGG | 0.342536 | 8.4:+19875239 | None:intergenic |
| AAAGGACACGTGAATGATAA+TGG | 0.374485 | 8.4:-19875702 | MS.gene43238:CDS |
| AATGCTGGAGAAAGAAATAA+TGG | 0.379943 | 8.4:-19875448 | MS.gene43238:CDS |
| GTAATGTTAACGACTTTAAT+GGG | 0.383223 | 8.4:-19875809 | MS.gene43238:CDS |
| TGGATCAATTGAGTATCAAT+TGG | 0.400219 | 8.4:+19875600 | None:intergenic |
| GGCGACACTACTGCCAGCGC+TGG | 0.401848 | 8.4:-19875981 | MS.gene43238:CDS |
| GGAATCTCAAACAAAACAAA+TGG | 0.404559 | 8.4:-19875325 | MS.gene43238:CDS |
| TGAGTTATGGTGATGTAATA+TGG | 0.419642 | 8.4:+19875395 | None:intergenic |
| GAATCGCATGGAGTGAATAA+GGG | 0.426052 | 8.4:-19875570 | MS.gene43238:CDS |
| CATTCTCCATGCAATAAATC+AGG | 0.429146 | 8.4:+19875867 | None:intergenic |
| CCAGAACCTCCGGATGGAAA+AGG | 0.430115 | 8.4:-19876813 | MS.gene43238:CDS |
| AAGCAATATCCACCCCATAA+AGG | 0.446187 | 8.4:-19875720 | MS.gene43238:CDS |
| TCTTTCAGATATAAAGTGAT+AGG | 0.450576 | 8.4:-19876744 | MS.gene43238:CDS |
| GGGCATGCTGGGAGTGGAAA+TGG | 0.452645 | 8.4:-19875789 | MS.gene43238:CDS |
| AACGACTTTAATGGGCATGC+TGG | 0.459557 | 8.4:-19875801 | MS.gene43238:CDS |
| GCCAAGGTTGAGCTTGTTCA+AGG | 0.462896 | 8.4:-19876669 | MS.gene43238:CDS |
| ACACAAAGCAAAATGGGTGC+TGG | 0.462953 | 8.4:-19875534 | MS.gene43238:CDS |
| TATAAACATATTGGTGTCAT+GGG | 0.463038 | 8.4:+19875248 | None:intergenic |
| CAGAACCTCCGGATGGAAAA+GGG | 0.470951 | 8.4:-19876812 | MS.gene43238:CDS |
| GGCCAAGAAATGATGGAGTT+GGG | 0.472970 | 8.4:-19875638 | MS.gene43238:CDS |
| ACAGCAACACAAAGCAAAAT+GGG | 0.475012 | 8.4:-19875540 | MS.gene43238:CDS |
| TCAAATTTGATTGAGTCCGT+TGG | 0.481525 | 8.4:-19875900 | MS.gene43238:CDS |
| ACGGACTCAATCAAATTTGA+AGG | 0.484060 | 8.4:+19875903 | None:intergenic |
| GAGAAGTTCTAGTTGAGTTA+TGG | 0.484339 | 8.4:+19875382 | None:intergenic |
| GCGACACTACTGCCAGCGCT+GGG | 0.486603 | 8.4:-19875980 | MS.gene43238:CDS |
| ATAACTCCTGATTTATTGCA+TGG | 0.486814 | 8.4:-19875873 | MS.gene43238:CDS |
| AAAAGTGGATGACAGTATCA+TGG | 0.488432 | 8.4:-19875277 | MS.gene43238:CDS |
| TTATAAACATATTGGTGTCA+TGG | 0.489313 | 8.4:+19875247 | None:intergenic |
| TAGAACTTCTCATCATAAAA+GGG | 0.491831 | 8.4:-19875370 | MS.gene43238:CDS |
| TCAATTGGAAAAGACTTACT+TGG | 0.495117 | 8.4:+19875615 | None:intergenic |
| TTTAATGGGCATGCTGGGAG+TGG | 0.496294 | 8.4:-19875795 | MS.gene43238:CDS |
| AGGCCAAGAAATGATGGAGT+TGG | 0.509705 | 8.4:-19875639 | MS.gene43238:CDS |
| CTCCATGCGATTCTGTGTTG+TGG | 0.510119 | 8.4:+19875580 | None:intergenic |
| CACAAAGCAAAATGGGTGCT+GGG | 0.510220 | 8.4:-19875533 | MS.gene43238:CDS |
| GAATCTCAAACAAAACAAAT+GGG | 0.512097 | 8.4:-19875324 | MS.gene43238:CDS |
| TCCTTGAACAAGCTCAACCT+TGG | 0.519506 | 8.4:+19876668 | None:intergenic |
| AAGCAAAATGGGTGCTGGGA+AGG | 0.526891 | 8.4:-19875529 | MS.gene43238:CDS |
| ACGACTTTAATGGGCATGCT+GGG | 0.528183 | 8.4:-19875800 | MS.gene43238:CDS |
| CAAACAAAACAAATGGGAGA+TGG | 0.529231 | 8.4:-19875318 | MS.gene43238:CDS |
| TGAGAAAGAGCCTCTAATGC+TGG | 0.538916 | 8.4:-19875463 | MS.gene43238:CDS |
| GCATGGAGAATGTATTAAAG+TGG | 0.541457 | 8.4:-19875856 | MS.gene43238:CDS |
| ATTAGAGGCTCTTTCTCACT+AGG | 0.544321 | 8.4:+19875468 | None:intergenic |
| TTCACGTGTCCTTTATGGGG+TGG | 0.551448 | 8.4:+19875711 | None:intergenic |
| TTTCTCTTTCCATTAAGACC+TGG | 0.558047 | 8.4:+19876718 | None:intergenic |
| GAACTTTCATCATGAAGCAT+AGG | 0.560357 | 8.4:+19876633 | None:intergenic |
| GATCATACAACCAGAACCTC+CGG | 0.562307 | 8.4:-19876823 | MS.gene43238:CDS |
| GAAAAGAAACAATGCTACAA+TGG | 0.565587 | 8.4:-19876033 | MS.gene43238:CDS |
| ATCAGGAGTTATTTCTCCAA+CGG | 0.571647 | 8.4:+19875884 | None:intergenic |
| AAATACTATCCTTAATATGG+TGG | 0.571876 | 8.4:-19875754 | MS.gene43238:CDS |
| TCATTCACGTGTCCTTTATG+GGG | 0.574307 | 8.4:+19875708 | None:intergenic |
| AATCGCATGGAGTGAATAAG+GGG | 0.580520 | 8.4:-19875569 | MS.gene43238:CDS |
| ATATAAAGTGATAGGAAACC+AGG | 0.581654 | 8.4:-19876736 | MS.gene43238:CDS |
| AAAGTGGATGACAGTATCAT+GGG | 0.589639 | 8.4:-19875276 | MS.gene43238:CDS |
| CAAACGTAACGTAAATCAAG+TGG | 0.607833 | 8.4:-19875943 | MS.gene43238:CDS |
| TAAAAGGGAAGTCAAATGCA+TGG | 0.622235 | 8.4:-19875355 | MS.gene43238:CDS |
| CGGACTCAATCAAATTTGAA+GGG | 0.624737 | 8.4:+19875904 | None:intergenic |
| ATCCACAACACAGAATCGCA+TGG | 0.628485 | 8.4:-19875582 | MS.gene43238:CDS |
| AGTCAAATGCATGGTCAATG+TGG | 0.632670 | 8.4:-19875346 | MS.gene43238:CDS |
| TTGCTCGTGCTTGTGTGTCG+AGG | 0.640512 | 8.4:+19875425 | None:intergenic |
| CGACACTACTGCCAGCGCTG+GGG | 0.643182 | 8.4:-19875979 | MS.gene43238:CDS |
| ACAAATGGGAGATGGAAACA+TGG | 0.655535 | 8.4:-19875310 | MS.gene43238:CDS |
| ATACAACCAGAACCTCCGGA+TGG | 0.675385 | 8.4:-19876819 | MS.gene43238:CDS |
| AAACGTAACGTAAATCAAGT+GGG | 0.678730 | 8.4:-19875942 | MS.gene43238:CDS |
| TCGCATGGAGTGAATAAGGG+GGG | 0.695513 | 8.4:-19875567 | MS.gene43238:CDS |
| ATCGCATGGAGTGAATAAGG+GGG | 0.696311 | 8.4:-19875568 | MS.gene43238:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGTGGTATAAGAAAAAA+AGG | - | chr8.4:19876450-19876469 | MS.gene43238:intron | 20.0% |
| !!! | ATGGAGAAAAAGAAAATTTT+CGG | - | chr8.4:19876095-19876114 | MS.gene43238:intron | 20.0% |
| !!! | CATATTAAGGATAGTATTTT+GGG | + | chr8.4:19876354-19876373 | None:intergenic | 20.0% |
| ! | AAATACTATCCTTAATATGG+TGG | - | chr8.4:19876355-19876374 | MS.gene43238:intron | 25.0% |
| ! | AAGAACAAAGTGATTAATAG+AGG | - | chr8.4:19875687-19875706 | MS.gene43238:CDS | 25.0% |
| ! | AGAAAAAATAGGAACAAGAA+AGG | - | chr8.4:19876278-19876297 | MS.gene43238:intron | 25.0% |
| ! | CCAAAATACTATCCTTAATA+TGG | - | chr8.4:19876352-19876371 | MS.gene43238:intron | 25.0% |
| ! | CTAGTTCAAAAAACAAAATG+TGG | - | chr8.4:19876435-19876454 | MS.gene43238:intron | 25.0% |
| ! | GAATCTCAAACAAAACAAAT+GGG | - | chr8.4:19876785-19876804 | MS.gene43238:CDS | 25.0% |
| ! | GTAATGTTAACGACTTTAAT+GGG | - | chr8.4:19876300-19876319 | MS.gene43238:intron | 25.0% |
| ! | TAGAACTTCTCATCATAAAA+GGG | - | chr8.4:19876739-19876758 | MS.gene43238:CDS | 25.0% |
| ! | TCTTTCAGATATAAAGTGAT+AGG | - | chr8.4:19875365-19875384 | MS.gene43238:CDS | 25.0% |
| ! | TTAAAGTGGAGAGAAAAAAT+AGG | - | chr8.4:19876267-19876286 | MS.gene43238:intron | 25.0% |
| !! | CCATATTAAGGATAGTATTT+TGG | + | chr8.4:19876355-19876374 | None:intergenic | 25.0% |
| !! | GATCATCTATGATCATATTT+TGG | - | chr8.4:19875716-19875735 | MS.gene43238:CDS | 25.0% |
| !!! | TATAAACATATTGGTGTCAT+GGG | + | chr8.4:19876864-19876883 | None:intergenic | 25.0% |
| !!! | TTATAAACATATTGGTGTCA+TGG | + | chr8.4:19876865-19876884 | None:intergenic | 25.0% |
| AAAAAAAGGCCAAGAAATGA+TGG | - | chr8.4:19876464-19876483 | MS.gene43238:intron | 30.0% | |
| AAACGTAACGTAAATCAAGT+GGG | - | chr8.4:19876167-19876186 | MS.gene43238:intron | 30.0% | |
| AATGCTGGAGAAAGAAATAA+TGG | - | chr8.4:19876661-19876680 | MS.gene43238:CDS | 30.0% | |
| ATAACTCCTGATTTATTGCA+TGG | - | chr8.4:19876236-19876255 | MS.gene43238:intron | 30.0% | |
| ATATAAAGTGATAGGAAACC+AGG | - | chr8.4:19875373-19875392 | MS.gene43238:CDS | 30.0% | |
| ATATGATCATAGATGATCCA+AGG | + | chr8.4:19875714-19875733 | None:intergenic | 30.0% | |
| ATTCTCGAGTTTATTCTTCA+TGG | + | chr8.4:19875586-19875605 | None:intergenic | 30.0% | |
| CATAACATATGTACTCAATG+CGG | - | chr8.4:19876020-19876039 | MS.gene43238:CDS | 30.0% | |
| CCATAGACAAAATTATGGTT+TGG | - | chr8.4:19875781-19875800 | MS.gene43238:CDS | 30.0% | |
| CTAGAACTTCTCATCATAAA+AGG | - | chr8.4:19876738-19876757 | MS.gene43238:CDS | 30.0% | |
| CTAGATTTAGACTCAGTATT+CGG | + | chr8.4:19875809-19875828 | None:intergenic | 30.0% | |
| CTTAATGGAAAGAGAAAAAG+TGG | - | chr8.4:19875397-19875416 | MS.gene43238:CDS | 30.0% | |
| GAAAAGAAACAATGCTACAA+TGG | - | chr8.4:19876076-19876095 | MS.gene43238:intron | 30.0% | |
| GGAATCTCAAACAAAACAAA+TGG | - | chr8.4:19876784-19876803 | MS.gene43238:CDS | 30.0% | |
| GGTAATGTTAACGACTTTAA+TGG | - | chr8.4:19876299-19876318 | MS.gene43238:intron | 30.0% | |
| TCAATTGGAAAAGACTTACT+TGG | + | chr8.4:19876497-19876516 | None:intergenic | 30.0% | |
| TGAAATTGATCTCACGAAAT+CGG | - | chr8.4:19875941-19875960 | MS.gene43238:CDS | 30.0% | |
| TGCAACCATAGACAAAATTA+TGG | - | chr8.4:19875776-19875795 | MS.gene43238:CDS | 30.0% | |
| TGGATCAATTGAGTATCAAT+TGG | + | chr8.4:19876512-19876531 | None:intergenic | 30.0% | |
| TTAATCTCTCCACCATATTA+AGG | + | chr8.4:19876367-19876386 | None:intergenic | 30.0% | |
| TTTAGCAACAAAAAATGCCA+AGG | - | chr8.4:19875424-19875443 | MS.gene43238:CDS | 30.0% | |
| ! | AAGAAAATTTTCGGTGAAGA+TGG | - | chr8.4:19876104-19876123 | MS.gene43238:intron | 30.0% |
| ! | CCAAACCATAATTTTGTCTA+TGG | + | chr8.4:19875784-19875803 | None:intergenic | 30.0% |
| ! | TGAGTTATGGTGATGTAATA+TGG | + | chr8.4:19876717-19876736 | None:intergenic | 30.0% |
| ! | TTGTAGCTTTTCCATTAACA+TGG | + | chr8.4:19875334-19875353 | None:intergenic | 30.0% |
| !! | GCACTTGTTGTTAAATTGTT+GGG | - | chr8.4:19875533-19875552 | MS.gene43238:CDS | 30.0% |
| !! | TGCACTTGTTGTTAAATTGT+TGG | - | chr8.4:19875532-19875551 | MS.gene43238:CDS | 30.0% |
| AAAAGTGGATGACAGTATCA+TGG | - | chr8.4:19876832-19876851 | MS.gene43238:CDS | 35.0% | |
| AAAGGACACGTGAATGATAA+TGG | - | chr8.4:19876407-19876426 | MS.gene43238:intron | 35.0% | |
| AAAGTGGATGACAGTATCAT+GGG | - | chr8.4:19876833-19876852 | MS.gene43238:CDS | 35.0% | |
| AAATTGTTGGGCAAATCCTT+GGG | - | chr8.4:19875545-19875564 | MS.gene43238:CDS | 35.0% | |
| AACGATGACAACCATGTTAA+TGG | - | chr8.4:19875320-19875339 | MS.gene43238:CDS | 35.0% | |
| AAGTGATTAATAGAGGTCCT+TGG | - | chr8.4:19875694-19875713 | MS.gene43238:CDS | 35.0% | |
| ACAGCAACACAAAGCAAAAT+GGG | - | chr8.4:19876569-19876588 | MS.gene43238:intron | 35.0% | |
| ACGGACTCAATCAAATTTGA+AGG | + | chr8.4:19876209-19876228 | None:intergenic | 35.0% | |
| ACTACATGGTCAAGTTTGAT+GGG | - | chr8.4:19875655-19875674 | MS.gene43238:CDS | 35.0% | |
| AGAATAAACTCGAGAATGTG+TGG | - | chr8.4:19875589-19875608 | MS.gene43238:CDS | 35.0% | |
| ATCATTCACGTGTCCTTTAT+GGG | + | chr8.4:19876405-19876424 | None:intergenic | 35.0% | |
| ATTATGACGAGAGTCTTCTT+TGG | - | chr8.4:19875832-19875851 | MS.gene43238:CDS | 35.0% | |
| ATTTCTTTCTCCAGCATTAG+AGG | + | chr8.4:19876659-19876678 | None:intergenic | 35.0% | |
| CAAACAAAACAAATGGGAGA+TGG | - | chr8.4:19876791-19876810 | MS.gene43238:CDS | 35.0% | |
| CAAACGTAACGTAAATCAAG+TGG | - | chr8.4:19876166-19876185 | MS.gene43238:intron | 35.0% | |
| CATTCTCCATGCAATAAATC+AGG | + | chr8.4:19876245-19876264 | None:intergenic | 35.0% | |
| CGCATTGAGTACATATGTTA+TGG | + | chr8.4:19876022-19876041 | None:intergenic | 35.0% | |
| CGGACTCAATCAAATTTGAA+GGG | + | chr8.4:19876208-19876227 | None:intergenic | 35.0% | |
| GAACTTTCATCATGAAGCAT+AGG | + | chr8.4:19875479-19875498 | None:intergenic | 35.0% | |
| GCATGGAGAATGTATTAAAG+TGG | - | chr8.4:19876253-19876272 | MS.gene43238:intron | 35.0% | |
| TAAAAGGGAAGTCAAATGCA+TGG | - | chr8.4:19876754-19876773 | MS.gene43238:CDS | 35.0% | |
| TAAATTGTTGGGCAAATCCT+TGG | - | chr8.4:19875544-19875563 | MS.gene43238:CDS | 35.0% | |
| TACAGCAACACAAAGCAAAA+TGG | - | chr8.4:19876568-19876587 | MS.gene43238:intron | 35.0% | |
| TACTACATGGTCAAGTTTGA+TGG | - | chr8.4:19875654-19875673 | MS.gene43238:CDS | 35.0% | |
| TATCATTCACGTGTCCTTTA+TGG | + | chr8.4:19876406-19876425 | None:intergenic | 35.0% | |
| TATGGTTGCAATTGAAGCAT+TGG | + | chr8.4:19875766-19875785 | None:intergenic | 35.0% | |
| TCAAATTTGATTGAGTCCGT+TGG | - | chr8.4:19876209-19876228 | MS.gene43238:intron | 35.0% | |
| TTATGACGAGAGTCTTCTTT+GGG | - | chr8.4:19875833-19875852 | MS.gene43238:CDS | 35.0% | |
| TTCATACACTGAAATTAGCG+CGG | - | chr8.4:19875895-19875914 | MS.gene43238:CDS | 35.0% | |
| TTTCTCTTTCCATTAAGACC+TGG | + | chr8.4:19875394-19875413 | None:intergenic | 35.0% | |
| ! | AAAATTTTCGGTGAAGATGG+CGG | - | chr8.4:19876107-19876126 | MS.gene43238:intron | 35.0% |
| ! | GAGAAGTTCTAGTTGAGTTA+TGG | + | chr8.4:19876730-19876749 | None:intergenic | 35.0% |
| ! | TTGAGCTTGTTCAAGGAAAT+AGG | - | chr8.4:19875447-19875466 | MS.gene43238:CDS | 35.0% |
| ! | TTTTCATTCCGCAATCTTTG+AGG | + | chr8.4:19876061-19876080 | None:intergenic | 35.0% |
| !! | ATCAGGAGTTATTTCTCCAA+CGG | + | chr8.4:19876228-19876247 | None:intergenic | 35.0% |
| !! | TGTTGGTAACTCTTACTACA+TGG | - | chr8.4:19875641-19875660 | MS.gene43238:CDS | 35.0% |
| !!! | ATATTTTGGCTGTGAGTCAA+TGG | - | chr8.4:19875730-19875749 | MS.gene43238:CDS | 35.0% |
| !!! | GGTTTTGAATTGATGGATGT+TGG | - | chr8.4:19875624-19875643 | MS.gene43238:CDS | 35.0% |
| AAGCAATATCCACCCCATAA+AGG | - | chr8.4:19876389-19876408 | MS.gene43238:intron | 40.0% | |
| AATCGCATGGAGTGAATAAG+GGG | - | chr8.4:19876540-19876559 | MS.gene43238:intron | 40.0% | |
| AATTGATCTCACGAAATCGG+TGG | - | chr8.4:19875944-19875963 | MS.gene43238:CDS | 40.0% | |
| ACAAATGGGAGATGGAAACA+TGG | - | chr8.4:19876799-19876818 | MS.gene43238:CDS | 40.0% | |
| AGAATCGCATGGAGTGAATA+AGG | - | chr8.4:19876538-19876557 | MS.gene43238:intron | 40.0% | |
| AGTCAAATGCATGGTCAATG+TGG | - | chr8.4:19876763-19876782 | MS.gene43238:CDS | 40.0% | |
| AGTTCTGTGATTGATGAGCT+AGG | - | chr8.4:19875494-19875513 | MS.gene43238:CDS | 40.0% | |
| ATTAGAGGCTCTTTCTCACT+AGG | + | chr8.4:19876644-19876663 | None:intergenic | 40.0% | |
| CTACATGGTCAAGTTTGATG+GGG | - | chr8.4:19875656-19875675 | MS.gene43238:CDS | 40.0% | |
| GAATCGCATGGAGTGAATAA+GGG | - | chr8.4:19876539-19876558 | MS.gene43238:intron | 40.0% | |
| GAGTCAGAATCAATGGAGAT+TGG | - | chr8.4:19875973-19875992 | MS.gene43238:CDS | 40.0% | |
| GATAGGAAACCAGGTCTTAA+TGG | - | chr8.4:19875382-19875401 | MS.gene43238:CDS | 40.0% | |
| TCATACACTGAAATTAGCGC+GGG | - | chr8.4:19875896-19875915 | MS.gene43238:CDS | 40.0% | |
| TCATTCACGTGTCCTTTATG+GGG | + | chr8.4:19876404-19876423 | None:intergenic | 40.0% | |
| TGGTATCATGTGCAATTCGA+AGG | - | chr8.4:19875993-19876012 | MS.gene43238:CDS | 40.0% | |
| TGTACTCAATGCGGATGTTA+TGG | - | chr8.4:19876029-19876048 | MS.gene43238:CDS | 40.0% | |
| ! | CAGTGTATGAAGATCGACTT+TGG | + | chr8.4:19875886-19875905 | None:intergenic | 40.0% |
| ! | GTGTTGTAACTTGTAACCCA+AGG | + | chr8.4:19875564-19875583 | None:intergenic | 40.0% |
| ! | TGTATGAAGATCGACTTTGG+CGG | + | chr8.4:19875883-19875902 | None:intergenic | 40.0% |
| !!! | CACAGGAGGTTTTGAATTGA+TGG | - | chr8.4:19875617-19875636 | MS.gene43238:CDS | 40.0% |
| AATGTGTGGAAACTCACAGG+AGG | - | chr8.4:19875603-19875622 | MS.gene43238:CDS | 45.0% | |
| ACAACAAGTGCATCCTTCCA+TGG | + | chr8.4:19875524-19875543 | None:intergenic | 45.0% | |
| ACACAAAGCAAAATGGGTGC+TGG | - | chr8.4:19876575-19876594 | MS.gene43238:intron | 45.0% | |
| ATCCACAACACAGAATCGCA+TGG | - | chr8.4:19876527-19876546 | MS.gene43238:intron | 45.0% | |
| ATCGCATGGAGTGAATAAGG+GGG | - | chr8.4:19876541-19876560 | MS.gene43238:intron | 45.0% | |
| CACAAAGCAAAATGGGTGCT+GGG | - | chr8.4:19876576-19876595 | MS.gene43238:intron | 45.0% | |
| CATACACTGAAATTAGCGCG+GGG | - | chr8.4:19875897-19875916 | MS.gene43238:CDS | 45.0% | |
| CATGGACGTGACTCAAAAAG+TGG | - | chr8.4:19876817-19876836 | MS.gene43238:CDS | 45.0% | |
| GAGAATGTGTGGAAACTCAC+AGG | - | chr8.4:19875600-19875619 | MS.gene43238:CDS | 45.0% | |
| GATCATACAACCAGAACCTC+CGG | - | chr8.4:19875286-19875305 | MS.gene43238:CDS | 45.0% | |
| GGTCATGTCCTCAAAGATTG+CGG | - | chr8.4:19876050-19876069 | MS.gene43238:intron | 45.0% | |
| GTTGGTCGAGTCAGAATCAA+TGG | - | chr8.4:19875966-19875985 | MS.gene43238:CDS | 45.0% | |
| TCCTTGAACAAGCTCAACCT+TGG | + | chr8.4:19875444-19875463 | None:intergenic | 45.0% | |
| TGAGAAAGAGCCTCTAATGC+TGG | - | chr8.4:19876646-19876665 | MS.gene43238:CDS | 45.0% | |
| ! | AACGACTTTAATGGGCATGC+TGG | - | chr8.4:19876308-19876327 | MS.gene43238:intron | 45.0% |
| ! | ACGACTTTAATGGGCATGCT+GGG | - | chr8.4:19876309-19876328 | MS.gene43238:intron | 45.0% |
| ! | AGGCCAAGAAATGATGGAGT+TGG | - | chr8.4:19876470-19876489 | MS.gene43238:intron | 45.0% |
| ! | GGCCAAGAAATGATGGAGTT+GGG | - | chr8.4:19876471-19876490 | MS.gene43238:intron | 45.0% |
| ! | GTATGAAGATCGACTTTGGC+GGG | + | chr8.4:19875882-19875901 | None:intergenic | 45.0% |
| ! | TCATCGTTCCCTTTTCCATC+CGG | + | chr8.4:19875308-19875327 | None:intergenic | 45.0% |
| !! | GCAATTGAAGCATTGGACGT+TGG | + | chr8.4:19875759-19875778 | None:intergenic | 45.0% |
| ATACAACCAGAACCTCCGGA+TGG | - | chr8.4:19875290-19875309 | MS.gene43238:CDS | 50.0% | |
| CAGAACCTCCGGATGGAAAA+GGG | - | chr8.4:19875297-19875316 | MS.gene43238:CDS | 50.0% | |
| CTCCATGCGATTCTGTGTTG+TGG | + | chr8.4:19876532-19876551 | None:intergenic | 50.0% | |
| GATCTCACGAAATCGGTGGT+TGG | - | chr8.4:19875948-19875967 | MS.gene43238:CDS | 50.0% | |
| GGCCCAACTCCATCATTTCT+TGG | + | chr8.4:19876476-19876495 | None:intergenic | 50.0% | |
| TCGCATGGAGTGAATAAGGG+GGG | - | chr8.4:19876542-19876561 | MS.gene43238:intron | 50.0% | |
| TTCACGTGTCCTTTATGGGG+TGG | + | chr8.4:19876401-19876420 | None:intergenic | 50.0% | |
| TTGATGAGCTAGGTGTGCCA+TGG | - | chr8.4:19875504-19875523 | MS.gene43238:CDS | 50.0% | |
| ! | GCCAAGGTTGAGCTTGTTCA+AGG | - | chr8.4:19875440-19875459 | MS.gene43238:CDS | 50.0% |
| ! | TTTAATGGGCATGCTGGGAG+TGG | - | chr8.4:19876314-19876333 | MS.gene43238:intron | 50.0% |
| !! | AAGCAAAATGGGTGCTGGGA+AGG | - | chr8.4:19876580-19876599 | MS.gene43238:intron | 50.0% |
| CCAGAACCTCCGGATGGAAA+AGG | - | chr8.4:19875296-19875315 | MS.gene43238:CDS | 55.0% | |
| CGAGAGTCTTCTTTGGGCGA+TGG | - | chr8.4:19875839-19875858 | MS.gene43238:CDS | 55.0% | |
| TGAGCTAGGTGTGCCATGGA+AGG | - | chr8.4:19875508-19875527 | MS.gene43238:CDS | 55.0% | |
| TTGCTCGTGCTTGTGTGTCG+AGG | + | chr8.4:19876687-19876706 | None:intergenic | 55.0% | |
| ! | CCTTTTCCATCCGGAGGTTC+TGG | + | chr8.4:19875299-19875318 | None:intergenic | 55.0% |
| ! | TCGTTCCCTTTTCCATCCGG+AGG | + | chr8.4:19875305-19875324 | None:intergenic | 55.0% |
| ! | TGCCAGCGCTGGGGAAAAAA+CGG | - | chr8.4:19876139-19876158 | MS.gene43238:intron | 55.0% |
| !! | GGCGGGAGTACTGATCATAG+AGG | + | chr8.4:19875865-19875884 | None:intergenic | 55.0% |
| GGGCATGCTGGGAGTGGAAA+TGG | - | chr8.4:19876320-19876339 | MS.gene43238:intron | 60.0% | |
| ! | CAGCGCTGGGGAAAAAACGG+TGG | - | chr8.4:19876142-19876161 | MS.gene43238:intron | 60.0% |
| !!! | CACCGTTTTTTCCCCAGCGC+TGG | + | chr8.4:19876144-19876163 | None:intergenic | 60.0% |
| CGACACTACTGCCAGCGCTG+GGG | - | chr8.4:19876130-19876149 | MS.gene43238:intron | 65.0% | |
| GCGACACTACTGCCAGCGCT+GGG | - | chr8.4:19876129-19876148 | MS.gene43238:intron | 65.0% | |
| GGCGACACTACTGCCAGCGC+TGG | - | chr8.4:19876128-19876147 | MS.gene43238:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 19875242 | 19876889 | 19875242 | ID=MS.gene43238 |
| chr8.4 | mRNA | 19875242 | 19876889 | 19875242 | ID=MS.gene43238.t1;Parent=MS.gene43238 |
| chr8.4 | exon | 19876637 | 19876889 | 19876637 | ID=MS.gene43238.t1.exon1;Parent=MS.gene43238.t1 |
| chr8.4 | CDS | 19876637 | 19876889 | 19876637 | ID=cds.MS.gene43238.t1;Parent=MS.gene43238.t1 |
| chr8.4 | exon | 19875242 | 19876065 | 19875242 | ID=MS.gene43238.t1.exon2;Parent=MS.gene43238.t1 |
| chr8.4 | CDS | 19875242 | 19876065 | 19875242 | ID=cds.MS.gene43238.t1;Parent=MS.gene43238.t1 |
| Gene Sequence |
| Protein sequence |
