Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43435.t1 | XP_013458668.1 | 90.6 | 310 | 21 | 5 | 1 | 306 | 8 | 313 | 1.00E-145 | 526.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43435.t1 | Q9SW11 | 27.3 | 183 | 123 | 3 | 105 | 282 | 32 | 209 | 1.7e-08 | 61.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43435.t1 | G7ZZT9 | 90.6 | 310 | 21 | 5 | 1 | 306 | 8 | 313 | 7.5e-146 | 526.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050961 | MS.gene43435 | 0.805039 | 1.62E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43435.t1 | MTR_4g134140 | 90.645 | 310 | 21 | 5 | 1 | 306 | 8 | 313 | 0.0 | 535 |
| MS.gene43435.t1 | MTR_4g134130 | 48.588 | 177 | 82 | 5 | 93 | 262 | 50 | 224 | 6.56e-42 | 145 |
| MS.gene43435.t1 | MTR_4g105090 | 36.957 | 184 | 101 | 6 | 86 | 266 | 109 | 280 | 3.26e-29 | 113 |
| MS.gene43435.t1 | MTR_4g125930 | 30.052 | 193 | 122 | 8 | 95 | 282 | 7 | 191 | 5.84e-17 | 81.6 |
| MS.gene43435.t1 | MTR_2g096850 | 31.677 | 161 | 101 | 4 | 93 | 252 | 31 | 183 | 9.76e-17 | 81.3 |
| MS.gene43435.t1 | MTR_3g008270 | 29.050 | 179 | 117 | 4 | 86 | 260 | 9 | 181 | 8.49e-12 | 66.2 |
| MS.gene43435.t1 | MTR_3g008280 | 26.875 | 160 | 112 | 3 | 95 | 253 | 24 | 179 | 3.73e-11 | 64.3 |
| MS.gene43435.t1 | MTR_7g077780 | 24.224 | 161 | 118 | 2 | 89 | 249 | 48 | 204 | 4.36e-11 | 63.9 |
| MS.gene43435.t1 | MTR_7g014950 | 29.661 | 118 | 82 | 1 | 100 | 216 | 23 | 140 | 8.05e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43435.t1 | AT5G47740 | 43.415 | 205 | 104 | 7 | 63 | 264 | 21 | 216 | 3.13e-46 | 156 |
| MS.gene43435.t1 | AT5G47740 | 42.995 | 207 | 104 | 8 | 63 | 264 | 21 | 218 | 2.49e-44 | 151 |
| MS.gene43435.t1 | AT2G19410 | 28.652 | 178 | 117 | 5 | 101 | 271 | 37 | 211 | 6.80e-16 | 78.6 |
| MS.gene43435.t1 | AT4G25160 | 29.299 | 157 | 105 | 2 | 95 | 250 | 22 | 173 | 1.75e-15 | 77.4 |
| MS.gene43435.t1 | AT2G45910 | 26.708 | 161 | 114 | 2 | 89 | 249 | 43 | 199 | 5.40e-14 | 72.8 |
| MS.gene43435.t1 | AT2G45910 | 26.708 | 161 | 114 | 2 | 89 | 249 | 43 | 199 | 5.40e-14 | 72.8 |
| MS.gene43435.t1 | AT5G51270 | 28.662 | 157 | 105 | 2 | 95 | 249 | 34 | 185 | 2.01e-11 | 65.1 |
| MS.gene43435.t1 | AT5G51270 | 28.662 | 157 | 105 | 2 | 95 | 249 | 34 | 185 | 2.01e-11 | 65.1 |
| MS.gene43435.t1 | AT5G65500 | 30.055 | 183 | 123 | 4 | 73 | 252 | 2 | 182 | 2.86e-11 | 64.7 |
| MS.gene43435.t1 | AT5G65500 | 30.601 | 183 | 120 | 5 | 73 | 252 | 2 | 180 | 8.03e-11 | 63.2 |
Find 61 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAAATAACCATGATAAAT+TGG | 0.121575 | 8.4:+706580 | None:intergenic |
| TGTGGAACTGCTACTGTTTC+TGG | 0.142547 | 8.4:+706655 | None:intergenic |
| CCAATTTATCATGGTTATTT+AGG | 0.173104 | 8.4:-706580 | MS.gene43435:CDS |
| AAAGCTTGAGTGGGACAAAA+TGG | 0.270855 | 8.4:+706609 | None:intergenic |
| CAAGTGTTTGATTACAATTT+CGG | 0.312597 | 8.4:-709287 | MS.gene43435:CDS |
| GTGATCGACCAGATGATTAA+TGG | 0.319312 | 8.4:-706701 | MS.gene43435:CDS |
| GTTACCTTAGATTATTAGAT+TGG | 0.320558 | 8.4:+706916 | None:intergenic |
| CTACCCAATCTAATAATCTA+AGG | 0.338317 | 8.4:-706920 | MS.gene43435:intron |
| GAATCTAAATATAAGGAAAT+TGG | 0.342523 | 8.4:-706952 | MS.gene43435:CDS |
| TTTGAAGAAGGAAAGTAGAT+TGG | 0.355768 | 8.4:-709219 | MS.gene43435:CDS |
| TTGTAGGGAATCTAAATATA+AGG | 0.359391 | 8.4:-706959 | MS.gene43435:CDS |
| CAAGCATGGAAGCACTTTCA+TGG | 0.384069 | 8.4:-709076 | MS.gene43435:CDS |
| AATAAAACCACAACCACAAC+TGG | 0.394819 | 8.4:+709325 | None:intergenic |
| TCTTGAATATCATGCTTAGT+TGG | 0.411358 | 8.4:+709383 | None:intergenic |
| AAGTGGACCCATTAATCATC+TGG | 0.419370 | 8.4:+706693 | None:intergenic |
| CTAAATAACCATGATAAATT+GGG | 0.423603 | 8.4:+706581 | None:intergenic |
| TTGGAATTAGCTTGACTTGA+GGG | 0.423894 | 8.4:+708997 | None:intergenic |
| GCAAAATTCCATTGCGGACA+TGG | 0.426337 | 8.4:-706780 | MS.gene43435:CDS |
| AGAGAAACAGTAGTTGTAGA+AGG | 0.431084 | 8.4:+709032 | None:intergenic |
| GAAATCTCCAGTTGTGGTTG+TGG | 0.445667 | 8.4:-709332 | MS.gene43435:CDS |
| TGATCGACCAGATGATTAAT+GGG | 0.456946 | 8.4:-706700 | MS.gene43435:CDS |
| AATATAAGGAAATTGGTGAT+TGG | 0.458551 | 8.4:-706945 | MS.gene43435:CDS |
| GTTTGAGATAAATTTGAAGA+AGG | 0.464932 | 8.4:-709231 | MS.gene43435:CDS |
| GAAGCCATTGTGGACCTTGT+AGG | 0.467590 | 8.4:-706975 | MS.gene43435:CDS |
| TCTGTAATATTCACTCATCT+TGG | 0.476127 | 8.4:+706542 | None:intergenic |
| AGGTGTCACGGCATGTTTCA+AGG | 0.477649 | 8.4:+709052 | None:intergenic |
| TTACCTTAGATTATTAGATT+GGG | 0.480669 | 8.4:+706917 | None:intergenic |
| GGTAGAAACGATGCTTATTG+AGG | 0.487398 | 8.4:-707012 | MS.gene43435:CDS |
| TGAGAGTACTTACATGGAGT+TGG | 0.499850 | 8.4:+708978 | None:intergenic |
| AAGCTTGAGTGGGACAAAAT+GGG | 0.501117 | 8.4:+706610 | None:intergenic |
| TTATATTTAGATTCCCTACA+AGG | 0.503404 | 8.4:+706961 | None:intergenic |
| AAGCCATTGTGGACCTTGTA+GGG | 0.505067 | 8.4:-706974 | MS.gene43435:CDS |
| TATAGATGATGTTGTTTATG+TGG | 0.505857 | 8.4:-709123 | MS.gene43435:CDS |
| GAAGCTATGTATTGAATCAA+AGG | 0.507814 | 8.4:-707148 | MS.gene43435:intron |
| GTAGAAACGATGCTTATTGA+GGG | 0.508850 | 8.4:-707011 | MS.gene43435:CDS |
| CGAAATTGTAATCAAACACT+TGG | 0.523720 | 8.4:+709288 | None:intergenic |
| TTCGGAGACGACGACGATGA+TGG | 0.523895 | 8.4:-709269 | MS.gene43435:CDS |
| CTCTACTTGATGAGAAATTG+TGG | 0.527299 | 8.4:+706637 | None:intergenic |
| ATTGGATTCAATAAGAGAAG+AGG | 0.530259 | 8.4:-709201 | MS.gene43435:CDS |
| CACAATTTCTCATCAAGTAG+AGG | 0.536462 | 8.4:-706636 | MS.gene43435:CDS |
| TCTAGATTTACACGACTCCT+TGG | 0.549421 | 8.4:+707234 | None:intergenic |
| TATGTGGCAGTGGGAACAAA+TGG | 0.556548 | 8.4:-709107 | MS.gene43435:CDS |
| TGATGTTGTTTATGTGGCAG+TGG | 0.557388 | 8.4:-709117 | MS.gene43435:CDS |
| AAATAGTAGGAAAGATTCCA+AGG | 0.561559 | 8.4:-707251 | MS.gene43435:intron |
| TTTGAACACCATGTCCGCAA+TGG | 0.562956 | 8.4:+706772 | None:intergenic |
| ATAGCTTCATGAATTTCTGA+AGG | 0.578929 | 8.4:+707163 | None:intergenic |
| TTGGGCATCAAAAGCTTGAG+TGG | 0.580087 | 8.4:+706599 | None:intergenic |
| CAACGTTGCTGAAGCCATTG+TGG | 0.592251 | 8.4:-706985 | MS.gene43435:CDS |
| AAATGGTGGAAGTTCAAGCA+TGG | 0.604604 | 8.4:-709090 | MS.gene43435:CDS |
| TGACTTGAGGGAAAACGTGT+AGG | 0.617086 | 8.4:+709009 | None:intergenic |
| TGGGCATCAAAAGCTTGAGT+GGG | 0.620582 | 8.4:+706600 | None:intergenic |
| TGACCCAAGTGAAAAGCAAG+AGG | 0.622721 | 8.4:-707194 | MS.gene43435:CDS |
| GTTGGAATTAGCTTGACTTG+AGG | 0.628301 | 8.4:+708996 | None:intergenic |
| GATGTTGTTTATGTGGCAGT+GGG | 0.642705 | 8.4:-709116 | MS.gene43435:CDS |
| AGTAGTTGTAGAAGGTGTCA+CGG | 0.650946 | 8.4:+709040 | None:intergenic |
| ATTCAATAAGAGAAGAGGAG+TGG | 0.652515 | 8.4:-709196 | MS.gene43435:CDS |
| ATTCCCTACAAGGTCCACAA+TGG | 0.658292 | 8.4:+706971 | None:intergenic |
| GTGGCAGTGGGAACAAATGG+TGG | 0.662195 | 8.4:-709104 | MS.gene43435:CDS |
| GATGTGAAAATCATATGTGA+AGG | 0.682874 | 8.4:-706731 | MS.gene43435:CDS |
| GATGATGAAATCTCCAGTTG+TGG | 0.697511 | 8.4:-709338 | MS.gene43435:CDS |
| AGGAAAGCAAAATTCCATTG+CGG | 0.715974 | 8.4:-706786 | MS.gene43435:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATAAAATAAATAAA+AGG | - | chr8.4:707779-707798 | MS.gene43435:intron | 0.0% |
| !! | AATAAATAAAAGGTTAAAAT+TGG | - | chr8.4:707789-707808 | MS.gene43435:intron | 10.0% |
| !! | ATTATTTATCATATGAATTA+AGG | - | chr8.4:707605-707624 | MS.gene43435:intron | 10.0% |
| !! | TAAATATAAAATGACATAAA+AGG | - | chr8.4:707373-707392 | MS.gene43435:intron | 10.0% |
| !! | TTATTTATCATATGAATTAA+GGG | - | chr8.4:707606-707625 | MS.gene43435:intron | 10.0% |
| !!! | ATTCTTTTTTAATTTTTTCT+TGG | + | chr8.4:708409-708428 | None:intergenic | 10.0% |
| !!! | TTATTAAAATTAAAAGTGTT+TGG | - | chr8.4:707325-707344 | MS.gene43435:intron | 10.0% |
| !! | AACTCCAAATAAATATTATT+TGG | + | chr8.4:708501-708520 | None:intergenic | 15.0% |
| !! | ACTCCAAATAAATATTATTT+GGG | + | chr8.4:708500-708519 | None:intergenic | 15.0% |
| !! | TGATCAATATAATATATTGT+TGG | - | chr8.4:707176-707195 | MS.gene43435:CDS | 15.0% |
| !! | TTCATAATCTTAAACAATTT+GGG | - | chr8.4:707002-707021 | MS.gene43435:CDS | 15.0% |
| !! | TTTCATAATCTTAAACAATT+TGG | - | chr8.4:707001-707020 | MS.gene43435:CDS | 15.0% |
| !!! | AATATATTGTTGGATTTTAA+GGG | - | chr8.4:707186-707205 | MS.gene43435:CDS | 15.0% |
| !!! | ATCTAATTAATTTTTCTCAA+GGG | + | chr8.4:708203-708222 | None:intergenic | 15.0% |
| !!! | TAATATATTGTTGGATTTTA+AGG | - | chr8.4:707185-707204 | MS.gene43435:CDS | 15.0% |
| !!! | TATCTAATTAATTTTTCTCA+AGG | + | chr8.4:708204-708223 | None:intergenic | 15.0% |
| !! | AAACCTTATATATGTATTCA+TGG | - | chr8.4:708856-708875 | MS.gene43435:intron | 20.0% |
| !! | ATCTTGAATGTTTAAATAGT+AGG | - | chr8.4:708678-708697 | MS.gene43435:intron | 20.0% |
| !! | CTAAATAACCATGATAAATT+GGG | + | chr8.4:709364-709383 | None:intergenic | 20.0% |
| !! | GAATCTAAATATAAGGAAAT+TGG | - | chr8.4:708990-709009 | MS.gene43435:intron | 20.0% |
| !! | GATTATTTAAATTGTGACTA+TGG | + | chr8.4:707028-707047 | None:intergenic | 20.0% |
| !! | TTAATAAAATGTCATGTGTT+TGG | + | chr8.4:707907-707926 | None:intergenic | 20.0% |
| !! | TTACCTTAGATTATTAGATT+GGG | + | chr8.4:709028-709047 | None:intergenic | 20.0% |
| !! | TTTAATTGTACTTGATTACT+AGG | - | chr8.4:707102-707121 | MS.gene43435:intron | 20.0% |
| !!! | ATTTTCATGAGAGATTTTTT+TGG | + | chr8.4:708559-708578 | None:intergenic | 20.0% |
| !!! | TAAACTTGCTTCAATATTTA+TGG | - | chr8.4:707567-707586 | MS.gene43435:intron | 20.0% |
| !!! | TTAAAACCTCTGTTTTTTTT+TGG | - | chr8.4:708317-708336 | MS.gene43435:intron | 20.0% |
| !!! | TTGGGATTTTTTATATTCAA+AGG | - | chr8.4:707141-707160 | MS.gene43435:intron | 20.0% |
| !!! | TTTTCATGAGAGATTTTTTT+GGG | + | chr8.4:708558-708577 | None:intergenic | 20.0% |
| ! | ACAATTAAAGTCATCAACTA+AGG | + | chr8.4:708279-708298 | None:intergenic | 25.0% |
| ! | ACTAAATCCTTCATTTCAAA+AGG | - | chr8.4:708819-708838 | MS.gene43435:intron | 25.0% |
| ! | ACTCCATGAATACATATATA+AGG | + | chr8.4:708862-708881 | None:intergenic | 25.0% |
| ! | ATTCGTAATAGATAGATATG+AGG | + | chr8.4:708011-708030 | None:intergenic | 25.0% |
| ! | CAAGTGTTTGATTACAATTT+CGG | - | chr8.4:706655-706674 | MS.gene43435:CDS | 25.0% |
| ! | CCAATTTATCATGGTTATTT+AGG | - | chr8.4:709362-709381 | MS.gene43435:CDS | 25.0% |
| ! | CCTAAATAACCATGATAAAT+TGG | + | chr8.4:709365-709384 | None:intergenic | 25.0% |
| ! | GAATATTGAGTAGCAAAAAT+GGG | - | chr8.4:709131-709150 | MS.gene43435:CDS | 25.0% |
| ! | GTGCCCAAATAATATTTATT+TGG | - | chr8.4:708494-708513 | MS.gene43435:intron | 25.0% |
| ! | GTTACCTTAGATTATTAGAT+TGG | + | chr8.4:709029-709048 | None:intergenic | 25.0% |
| ! | TCAAGAACAGTCTAATAATA+TGG | + | chr8.4:708114-708133 | None:intergenic | 25.0% |
| ! | TCATATCTATCTATTACGAA+TGG | - | chr8.4:708010-708029 | MS.gene43435:intron | 25.0% |
| ! | TGAATATTGAGTAGCAAAAA+TGG | - | chr8.4:709130-709149 | MS.gene43435:CDS | 25.0% |
| ! | TTATATTTAGATTCCCTACA+AGG | + | chr8.4:708984-709003 | None:intergenic | 25.0% |
| ! | TTGTAGGGAATCTAAATATA+AGG | - | chr8.4:708983-709002 | MS.gene43435:intron | 25.0% |
| ! | TTTAATTGTACTTGGTTTCT+AGG | - | chr8.4:708290-708309 | MS.gene43435:intron | 25.0% |
| !! | AATATAAGGAAATTGGTGAT+TGG | - | chr8.4:708997-709016 | MS.gene43435:CDS | 25.0% |
| !! | GTTTGAGATAAATTTGAAGA+AGG | - | chr8.4:706711-706730 | MS.gene43435:CDS | 25.0% |
| !! | TATAGATGATGTTGTTTATG+TGG | - | chr8.4:706819-706838 | MS.gene43435:intron | 25.0% |
| !! | TTGATGACTTTAATTGTACT+TGG | - | chr8.4:708282-708301 | MS.gene43435:intron | 25.0% |
| !!! | AGGAATTTTAAAATCGTTGT+TGG | - | chr8.4:707122-707141 | MS.gene43435:intron | 25.0% |
| !!! | GGAATTTTAAAATCGTTGTT+GGG | - | chr8.4:707123-707142 | MS.gene43435:intron | 25.0% |
| !!! | GTGTCAAAACATTTTTGTTT+AGG | + | chr8.4:708378-708397 | None:intergenic | 25.0% |
| !!! | TCTTGTTTTTTGTTTTGAAG+AGG | - | chr8.4:707707-707726 | MS.gene43435:intron | 25.0% |
| !!! | TTTTTTTTGGTTACACTCTT+CGG | - | chr8.4:708330-708349 | MS.gene43435:intron | 25.0% |
| AAAGCAGTACAGTACTAAAA+CGG | - | chr8.4:707666-707685 | MS.gene43435:intron | 30.0% | |
| AAATAGTAGGAAAGATTCCA+AGG | - | chr8.4:708691-708710 | MS.gene43435:intron | 30.0% | |
| ACAATTAAAGTCAGCTCTTA+TGG | + | chr8.4:707091-707110 | None:intergenic | 30.0% | |
| ACATGAGTTGTTTGTAGAAA+AGG | + | chr8.4:709055-709074 | None:intergenic | 30.0% | |
| ATAATGAAAGGCTAACATAC+AGG | - | chr8.4:708903-708922 | MS.gene43435:intron | 30.0% | |
| ATAGCTTCATGAATTTCTGA+AGG | + | chr8.4:708782-708801 | None:intergenic | 30.0% | |
| ATTGGATTCAATAAGAGAAG+AGG | - | chr8.4:706741-706760 | MS.gene43435:CDS | 30.0% | |
| CGAAATTGTAATCAAACACT+TGG | + | chr8.4:706657-706676 | None:intergenic | 30.0% | |
| CTACCCAATCTAATAATCTA+AGG | - | chr8.4:709022-709041 | MS.gene43435:CDS | 30.0% | |
| GAAGCTATGTATTGAATCAA+AGG | - | chr8.4:708794-708813 | MS.gene43435:intron | 30.0% | |
| GATGTGAAAATCATATGTGA+AGG | - | chr8.4:709211-709230 | MS.gene43435:CDS | 30.0% | |
| GTACCAGTAGTAATAATGAA+AGG | - | chr8.4:708891-708910 | MS.gene43435:intron | 30.0% | |
| GTGTAACCAAAAAAAAACAG+AGG | + | chr8.4:708326-708345 | None:intergenic | 30.0% | |
| TAGCCTTTCATTATTACTAC+TGG | + | chr8.4:708897-708916 | None:intergenic | 30.0% | |
| TATCATATGAATTAAGGGCA+AGG | - | chr8.4:707611-707630 | MS.gene43435:intron | 30.0% | |
| TCTTGAATATCATGCTTAGT+TGG | + | chr8.4:706562-706581 | None:intergenic | 30.0% | |
| TTTGAAGAAGGAAAGTAGAT+TGG | - | chr8.4:706723-706742 | MS.gene43435:CDS | 30.0% | |
| ! | TCATCTTGGTGATAAAAATC+TGG | + | chr8.4:709389-709408 | None:intergenic | 30.0% |
| ! | TTTTGATGCCCAATTTATCA+TGG | - | chr8.4:709353-709372 | MS.gene43435:CDS | 30.0% |
| !!! | ATGAGAGATTTTTTTGGGAA+TGG | + | chr8.4:708553-708572 | None:intergenic | 30.0% |
| !!! | GATGTATCCTTTTGAAATGA+AGG | + | chr8.4:708829-708848 | None:intergenic | 30.0% |
| AAAGGCTAACATACAGGTTA+AGG | - | chr8.4:708909-708928 | MS.gene43435:intron | 35.0% | |
| AAGGCATGGAAAATGAAATC+AGG | + | chr8.4:708260-708279 | None:intergenic | 35.0% | |
| AATAAAACCACAACCACAAC+TGG | + | chr8.4:706620-706639 | None:intergenic | 35.0% | |
| AGAGAAACAGTAGTTGTAGA+AGG | + | chr8.4:706913-706932 | None:intergenic | 35.0% | |
| AGATTAACTAGGGGAGTAAT+GGG | + | chr8.4:708076-708095 | None:intergenic | 35.0% | |
| AGGAAAGCAAAATTCCATTG+CGG | - | chr8.4:709156-709175 | MS.gene43435:CDS | 35.0% | |
| AGGCATGGAAAATGAAATCA+GGG | + | chr8.4:708259-708278 | None:intergenic | 35.0% | |
| ATGGCATGAAAAATGAGTTC+AGG | + | chr8.4:707072-707091 | None:intergenic | 35.0% | |
| ATTCAATAAGAGAAGAGGAG+TGG | - | chr8.4:706746-706765 | MS.gene43435:CDS | 35.0% | |
| CACAATTTCTCATCAAGTAG+AGG | - | chr8.4:709306-709325 | MS.gene43435:CDS | 35.0% | |
| CTCTACTTGATGAGAAATTG+TGG | + | chr8.4:709308-709327 | None:intergenic | 35.0% | |
| GTAGAAACGATGCTTATTGA+GGG | - | chr8.4:708931-708950 | MS.gene43435:intron | 35.0% | |
| GTCCAACGTTAGATTAACTA+GGG | + | chr8.4:708086-708105 | None:intergenic | 35.0% | |
| TAAAGTCATCAACTAAGGCA+TGG | + | chr8.4:708274-708293 | None:intergenic | 35.0% | |
| TAGATTAACTAGGGGAGTAA+TGG | + | chr8.4:708077-708096 | None:intergenic | 35.0% | |
| TCCAACGTTAGATTAACTAG+GGG | + | chr8.4:708085-708104 | None:intergenic | 35.0% | |
| TCTGTCCAACATTAAACTAG+AGG | + | chr8.4:708163-708182 | None:intergenic | 35.0% | |
| TGATCGACCAGATGATTAAT+GGG | - | chr8.4:709242-709261 | MS.gene43435:CDS | 35.0% | |
| TGGGTGGTTATATTAGAAAG+CGG | - | chr8.4:707734-707753 | MS.gene43435:intron | 35.0% | |
| TGTCCAACGTTAGATTAACT+AGG | + | chr8.4:708087-708106 | None:intergenic | 35.0% | |
| ! | AAAAGCTAGCTTATAGCTGA+TGG | - | chr8.4:707268-707287 | MS.gene43435:intron | 35.0% |
| ! | TAAGCTAGCTTATAGCTTGT+TGG | + | chr8.4:707949-707968 | None:intergenic | 35.0% |
| ! | TTGGAATTAGCTTGACTTGA+GGG | + | chr8.4:706948-706967 | None:intergenic | 35.0% |
| !! | ATTTCCTCTTGCTTTTCACT+TGG | + | chr8.4:708755-708774 | None:intergenic | 35.0% |
| !! | TCTGAATGAGAGTACTTACA+TGG | + | chr8.4:706973-706992 | None:intergenic | 35.0% |
| !! | TTGGATTTTAAGGGTGTGTT+TGG | - | chr8.4:707195-707214 | MS.gene43435:CDS | 35.0% |
| !! | TTTCCTCTTGCTTTTCACTT+GGG | + | chr8.4:708754-708773 | None:intergenic | 35.0% |
| !!! | AGTTGTGGTTGTGGTTTTAT+TGG | - | chr8.4:706619-706638 | MS.gene43435:CDS | 35.0% |
| !!! | GGTGTGTTTTGATTTTGAAG+TGG | + | chr8.4:709269-709288 | None:intergenic | 35.0% |
| !!! | GTTGTGGTTGTGGTTTTATT+GGG | - | chr8.4:706620-706639 | MS.gene43435:CDS | 35.0% |
| !!! | TTTGTTTTGAAGAGGAACGT+GGG | - | chr8.4:707715-707734 | MS.gene43435:intron | 35.0% |
| !!! | TTTTGTTTTGAAGAGGAACG+TGG | - | chr8.4:707714-707733 | MS.gene43435:intron | 35.0% |
| AAAGCTTGAGTGGGACAAAA+TGG | + | chr8.4:709336-709355 | None:intergenic | 40.0% | |
| AAGCTTGAGTGGGACAAAAT+GGG | + | chr8.4:709335-709354 | None:intergenic | 40.0% | |
| AAGTGGACCCATTAATCATC+TGG | + | chr8.4:709252-709271 | None:intergenic | 40.0% | |
| AGGCACAATCATTCACACTT+AGG | + | chr8.4:707991-708010 | None:intergenic | 40.0% | |
| ATTCACACTTAGGCTGTGTT+TGG | + | chr8.4:707981-708000 | None:intergenic | 40.0% | |
| GATGATGAAATCTCCAGTTG+TGG | - | chr8.4:706604-706623 | MS.gene43435:CDS | 40.0% | |
| GGTAGAAACGATGCTTATTG+AGG | - | chr8.4:708930-708949 | MS.gene43435:intron | 40.0% | |
| GTGATCGACCAGATGATTAA+TGG | - | chr8.4:709241-709260 | MS.gene43435:CDS | 40.0% | |
| GTTGGACAGAGTCCTTATTA+TGG | - | chr8.4:708173-708192 | MS.gene43435:intron | 40.0% | |
| TCCCCTAGTTAATCTAACGT+TGG | - | chr8.4:708081-708100 | MS.gene43435:intron | 40.0% | |
| TCTAGATTTACACGACTCCT+TGG | + | chr8.4:708711-708730 | None:intergenic | 40.0% | |
| TTGAGTAGCAAAAATGGGTC+AGG | - | chr8.4:709136-709155 | MS.gene43435:CDS | 40.0% | |
| ! | AAATGGTGGAAGTTCAAGCA+TGG | - | chr8.4:706852-706871 | MS.gene43435:intron | 40.0% |
| ! | ACATTAAACTAGAGGAGCGT+TGG | + | chr8.4:708155-708174 | None:intergenic | 40.0% |
| ! | ACGCTCCTCTAGTTTAATGT+TGG | - | chr8.4:708155-708174 | MS.gene43435:intron | 40.0% |
| ! | GATGTTGTTTATGTGGCAGT+GGG | - | chr8.4:706826-706845 | MS.gene43435:intron | 40.0% |
| ! | GTTGGAATTAGCTTGACTTG+AGG | + | chr8.4:706949-706968 | None:intergenic | 40.0% |
| ! | TGATGTTGTTTATGTGGCAG+TGG | - | chr8.4:706825-706844 | MS.gene43435:intron | 40.0% |
| !! | AGTAGTTGTAGAAGGTGTCA+CGG | + | chr8.4:706905-706924 | None:intergenic | 40.0% |
| !! | CATTAAACTAGAGGAGCGTT+GGG | + | chr8.4:708154-708173 | None:intergenic | 40.0% |
| !! | TGAGAGTACTTACATGGAGT+TGG | + | chr8.4:706967-706986 | None:intergenic | 40.0% |
| AAGCCATTGTGGACCTTGTA+GGG | - | chr8.4:708968-708987 | MS.gene43435:intron | 45.0% | |
| ATTCCCTACAAGGTCCACAA+TGG | + | chr8.4:708974-708993 | None:intergenic | 45.0% | |
| CTCAAGGGACGTCCATAATA+AGG | + | chr8.4:708188-708207 | None:intergenic | 45.0% | |
| GAAATCTCCAGTTGTGGTTG+TGG | - | chr8.4:706610-706629 | MS.gene43435:CDS | 45.0% | |
| GCAAAATTCCATTGCGGACA+TGG | - | chr8.4:709162-709181 | MS.gene43435:CDS | 45.0% | |
| TATGTGGCAGTGGGAACAAA+TGG | - | chr8.4:706835-706854 | MS.gene43435:intron | 45.0% | |
| TGACCCAAGTGAAAAGCAAG+AGG | - | chr8.4:708748-708767 | MS.gene43435:intron | 45.0% | |
| TGACTTGAGGGAAAACGTGT+AGG | + | chr8.4:706936-706955 | None:intergenic | 45.0% | |
| TGGGCATCAAAAGCTTGAGT+GGG | + | chr8.4:709345-709364 | None:intergenic | 45.0% | |
| TGTGGAACTGCTACTGTTTC+TGG | + | chr8.4:709290-709309 | None:intergenic | 45.0% | |
| TTGGGCATCAAAAGCTTGAG+TGG | + | chr8.4:709346-709365 | None:intergenic | 45.0% | |
| TTTGAACACCATGTCCGCAA+TGG | + | chr8.4:709173-709192 | None:intergenic | 45.0% | |
| ! | TGCTTTTCACTTGGGTCAAG+TGG | + | chr8.4:708746-708765 | None:intergenic | 45.0% |
| !! | CAAGCATGGAAGCACTTTCA+TGG | - | chr8.4:706866-706885 | MS.gene43435:intron | 45.0% |
| CAACGTTGCTGAAGCCATTG+TGG | - | chr8.4:708957-708976 | MS.gene43435:intron | 50.0% | |
| GAAGCCATTGTGGACCTTGT+AGG | - | chr8.4:708967-708986 | MS.gene43435:intron | 50.0% | |
| ! | AGGTGTCACGGCATGTTTCA+AGG | + | chr8.4:706893-706912 | None:intergenic | 50.0% |
| !!! | GTTTTGAAGAGGAACGTGGG+TGG | - | chr8.4:707718-707737 | MS.gene43435:intron | 50.0% |
| GTGGCAGTGGGAACAAATGG+TGG | - | chr8.4:706838-706857 | MS.gene43435:intron | 55.0% | |
| TTCGGAGACGACGACGATGA+TGG | - | chr8.4:706673-706692 | MS.gene43435:CDS | 55.0% | |
| ! | CTCTTCGGTGCACACTTGCT+TGG | - | chr8.4:708345-708364 | MS.gene43435:intron | 55.0% |
| !! | CTAGAGGAGCGTTGGGAGCG+TGG | + | chr8.4:708147-708166 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 706556 | 709408 | 706556 | ID=MS.gene43435 |
| chr8.4 | mRNA | 706556 | 709408 | 706556 | ID=MS.gene43435.t1;Parent=MS.gene43435 |
| chr8.4 | exon | 708991 | 709408 | 708991 | ID=MS.gene43435.t1.exon1;Parent=MS.gene43435.t1 |
| chr8.4 | CDS | 708991 | 709408 | 708991 | ID=cds.MS.gene43435.t1;Parent=MS.gene43435.t1 |
| chr8.4 | exon | 707149 | 707267 | 707149 | ID=MS.gene43435.t1.exon2;Parent=MS.gene43435.t1 |
| chr8.4 | CDS | 707149 | 707267 | 707149 | ID=cds.MS.gene43435.t1;Parent=MS.gene43435.t1 |
| chr8.4 | exon | 706921 | 707039 | 706921 | ID=MS.gene43435.t1.exon3;Parent=MS.gene43435.t1 |
| chr8.4 | CDS | 706921 | 707039 | 706921 | ID=cds.MS.gene43435.t1;Parent=MS.gene43435.t1 |
| chr8.4 | exon | 706556 | 706820 | 706556 | ID=MS.gene43435.t1.exon4;Parent=MS.gene43435.t1 |
| chr8.4 | CDS | 706556 | 706820 | 706556 | ID=cds.MS.gene43435.t1;Parent=MS.gene43435.t1 |
| Gene Sequence |
| Protein sequence |
