Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050961.t1 | XP_013450450.1 | 78.6 | 546 | 87 | 6 | 1 | 536 | 1 | 526 | 1.10E-235 | 825.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050961.t1 | Q9FKL6 | 40.2 | 338 | 179 | 8 | 51 | 372 | 49 | 379 | 4.8e-62 | 240.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050961.t1 | A0A072U5S0 | 78.6 | 546 | 87 | 6 | 1 | 536 | 1 | 526 | 8.0e-236 | 825.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049413 | MS.gene050961 | 0.820902 | 5.37E-53 | -1.69E-46 |
| MS.gene050148 | MS.gene050961 | 0.820051 | 8.41E-53 | -1.69E-46 |
| MS.gene050149 | MS.gene050961 | 0.815644 | 8.32E-52 | -1.69E-46 |
| MS.gene050961 | MS.gene051959 | 0.831973 | 1.23E-55 | -1.69E-46 |
| MS.gene050961 | MS.gene051960 | 0.830435 | 2.94E-55 | -1.69E-46 |
| MS.gene050961 | MS.gene052053 | 0.820223 | 7.68E-53 | -1.69E-46 |
| MS.gene050961 | MS.gene052570 | 0.84776 | 9.43E-60 | -1.69E-46 |
| MS.gene050961 | MS.gene053601 | 0.840064 | 1.09E-57 | -1.69E-46 |
| MS.gene050961 | MS.gene054892 | 0.825537 | 4.44E-54 | -1.69E-46 |
| MS.gene050961 | MS.gene054893 | 0.817921 | 2.57E-52 | -1.69E-46 |
| MS.gene050961 | MS.gene055549 | 0.803101 | 4.09E-49 | -1.69E-46 |
| MS.gene050961 | MS.gene055550 | 0.802559 | 5.30E-49 | -1.69E-46 |
| MS.gene050961 | MS.gene05861 | 0.814128 | 1.80E-51 | -1.69E-46 |
| MS.gene050961 | MS.gene05862 | 0.811962 | 5.39E-51 | -1.69E-46 |
| MS.gene050961 | MS.gene05969 | 0.815329 | 9.77E-52 | -1.69E-46 |
| MS.gene050961 | MS.gene06023 | 0.828674 | 7.88E-55 | -1.69E-46 |
| MS.gene050961 | MS.gene060522 | 0.829288 | 5.60E-55 | -1.69E-46 |
| MS.gene050961 | MS.gene061384 | 0.810776 | 9.74E-51 | -1.69E-46 |
| MS.gene050961 | MS.gene061682 | 0.827652 | 1.39E-54 | -1.69E-46 |
| MS.gene050961 | MS.gene061729 | 0.837522 | 4.95E-57 | -1.69E-46 |
| MS.gene050961 | MS.gene061795 | 0.814334 | 1.62E-51 | -1.69E-46 |
| MS.gene050961 | MS.gene061814 | 0.806953 | 6.40E-50 | -1.69E-46 |
| MS.gene050961 | MS.gene062288 | 0.800098 | 1.69E-48 | -1.69E-46 |
| MS.gene050961 | MS.gene063094 | 0.849014 | 4.24E-60 | -1.69E-46 |
| MS.gene050961 | MS.gene063690 | 0.801184 | 1.01E-48 | -1.69E-46 |
| MS.gene050961 | MS.gene063691 | 0.826243 | 3.02E-54 | -1.69E-46 |
| MS.gene050961 | MS.gene064096 | 0.802825 | 4.67E-49 | -1.69E-46 |
| MS.gene050961 | MS.gene064415 | 0.828412 | 9.12E-55 | -1.69E-46 |
| MS.gene050961 | MS.gene064844 | 0.849662 | 2.80E-60 | -1.69E-46 |
| MS.gene050961 | MS.gene065380 | 0.826921 | 2.08E-54 | -1.69E-46 |
| MS.gene050961 | MS.gene06543 | 0.83213 | 1.13E-55 | -1.69E-46 |
| MS.gene050961 | MS.gene065509 | 0.813664 | 2.28E-51 | -1.69E-46 |
| MS.gene050961 | MS.gene065510 | 0.809673 | 1.68E-50 | -1.69E-46 |
| MS.gene050961 | MS.gene066068 | 0.820049 | 8.42E-53 | -1.69E-46 |
| MS.gene050961 | MS.gene066069 | 0.823291 | 1.50E-53 | -1.69E-46 |
| MS.gene050961 | MS.gene066630 | 0.802935 | 4.43E-49 | -1.69E-46 |
| MS.gene050961 | MS.gene067477 | 0.823718 | 1.19E-53 | -1.69E-46 |
| MS.gene050961 | MS.gene067785 | 0.815946 | 7.12E-52 | -1.69E-46 |
| MS.gene050961 | MS.gene06788 | 0.804793 | 1.82E-49 | -1.69E-46 |
| MS.gene050961 | MS.gene070014 | 0.856206 | 3.76E-62 | -1.69E-46 |
| MS.gene050961 | MS.gene070275 | 0.817105 | 3.92E-52 | -1.69E-46 |
| MS.gene050961 | MS.gene071703 | 0.812127 | 4.96E-51 | -1.69E-46 |
| MS.gene050961 | MS.gene071949 | 0.852384 | 4.78E-61 | -1.69E-46 |
| MS.gene050961 | MS.gene072560 | 0.951051 | 4.60E-109 | -1.69E-46 |
| MS.gene050961 | MS.gene073175 | 0.826524 | 2.59E-54 | -1.69E-46 |
| MS.gene050961 | MS.gene073306 | 0.816842 | 4.49E-52 | -1.69E-46 |
| MS.gene050961 | MS.gene074124 | 0.824649 | 7.20E-54 | -1.69E-46 |
| MS.gene050961 | MS.gene08120 | 0.812606 | 3.90E-51 | -1.69E-46 |
| MS.gene050961 | MS.gene09747 | 0.82123 | 4.51E-53 | -1.69E-46 |
| MS.gene050961 | MS.gene20350 | 0.825765 | 3.92E-54 | -1.69E-46 |
| MS.gene050961 | MS.gene21214 | 0.823514 | 1.33E-53 | -1.69E-46 |
| MS.gene050961 | MS.gene22661 | 0.845704 | 3.44E-59 | -1.69E-46 |
| MS.gene050961 | MS.gene24408 | 0.808311 | 3.30E-50 | -1.69E-46 |
| MS.gene050961 | MS.gene25530 | 0.839782 | 1.29E-57 | -1.69E-46 |
| MS.gene050961 | MS.gene25879 | 0.832209 | 1.08E-55 | -1.69E-46 |
| MS.gene050961 | MS.gene29036 | 0.806526 | 7.88E-50 | -1.69E-46 |
| MS.gene050961 | MS.gene29096 | 0.808529 | 2.96E-50 | -1.69E-46 |
| MS.gene050961 | MS.gene31091 | 0.830329 | 3.12E-55 | -1.69E-46 |
| MS.gene050961 | MS.gene32673 | 0.800721 | 1.26E-48 | -1.69E-46 |
| MS.gene050961 | MS.gene32929 | 0.823334 | 1.46E-53 | -1.69E-46 |
| MS.gene050961 | MS.gene33742 | 0.81427 | 1.68E-51 | -1.69E-46 |
| MS.gene050961 | MS.gene34636 | 0.801883 | 7.30E-49 | -1.69E-46 |
| MS.gene050961 | MS.gene36268 | 0.831168 | 1.94E-55 | -1.69E-46 |
| MS.gene050961 | MS.gene36830 | 0.807685 | 4.48E-50 | -1.69E-46 |
| MS.gene050961 | MS.gene36865 | 0.805693 | 1.18E-49 | -1.69E-46 |
| MS.gene050961 | MS.gene36866 | 0.815138 | 1.08E-51 | -1.69E-46 |
| MS.gene050961 | MS.gene39743 | 0.809876 | 1.52E-50 | -1.69E-46 |
| MS.gene050961 | MS.gene40619 | 0.804534 | 2.06E-49 | -1.69E-46 |
| MS.gene050961 | MS.gene40620 | 0.80552 | 1.28E-49 | -1.69E-46 |
| MS.gene050961 | MS.gene41704 | 0.808317 | 3.29E-50 | -1.69E-46 |
| MS.gene050961 | MS.gene43381 | 0.817617 | 3.00E-52 | -1.69E-46 |
| MS.gene050961 | MS.gene43435 | 0.805039 | 1.62E-49 | -1.69E-46 |
| MS.gene050961 | MS.gene43937 | 0.807651 | 4.56E-50 | -1.69E-46 |
| MS.gene050961 | MS.gene44010 | 0.832788 | 7.74E-56 | -1.69E-46 |
| MS.gene050961 | MS.gene44854 | 0.804838 | 1.78E-49 | -1.69E-46 |
| MS.gene050961 | MS.gene45115 | 0.822579 | 2.20E-53 | -1.69E-46 |
| MS.gene050961 | MS.gene45552 | 0.838002 | 3.72E-57 | -1.69E-46 |
| MS.gene050961 | MS.gene47724 | 0.820208 | 7.74E-53 | -1.69E-46 |
| MS.gene050961 | MS.gene48017 | 0.808575 | 2.89E-50 | -1.69E-46 |
| MS.gene050961 | MS.gene49158 | 0.805479 | 1.31E-49 | -1.69E-46 |
| MS.gene050961 | MS.gene49911 | 0.812158 | 4.88E-51 | -1.69E-46 |
| MS.gene050961 | MS.gene51894 | 0.809874 | 1.53E-50 | -1.69E-46 |
| MS.gene050961 | MS.gene51935 | 0.809708 | 1.66E-50 | -1.69E-46 |
| MS.gene050961 | MS.gene52226 | 0.809665 | 1.69E-50 | -1.69E-46 |
| MS.gene050961 | MS.gene54123 | 0.807243 | 5.56E-50 | -1.69E-46 |
| MS.gene050961 | MS.gene54704 | 0.805192 | 1.50E-49 | -1.69E-46 |
| MS.gene050961 | MS.gene54952 | 0.82962 | 4.65E-55 | -1.69E-46 |
| MS.gene050961 | MS.gene55040 | 0.816347 | 5.79E-52 | -1.69E-46 |
| MS.gene050961 | MS.gene55755 | 0.821887 | 3.18E-53 | -1.69E-46 |
| MS.gene050961 | MS.gene56507 | 0.8042 | 2.42E-49 | -1.69E-46 |
| MS.gene050961 | MS.gene56769 | 0.81395 | 1.97E-51 | -1.69E-46 |
| MS.gene050961 | MS.gene57128 | 0.806295 | 8.82E-50 | -1.69E-46 |
| MS.gene050961 | MS.gene57308 | 0.828017 | 1.14E-54 | -1.69E-46 |
| MS.gene050961 | MS.gene59032 | 0.813589 | 2.37E-51 | -1.69E-46 |
| MS.gene050961 | MS.gene60615 | 0.806867 | 6.68E-50 | -1.69E-46 |
| MS.gene050961 | MS.gene62676 | 0.811185 | 7.94E-51 | -1.69E-46 |
| MS.gene050961 | MS.gene63435 | 0.83405 | 3.75E-56 | -1.69E-46 |
| MS.gene050961 | MS.gene65297 | 0.849948 | 2.33E-60 | -1.69E-46 |
| MS.gene050961 | MS.gene65364 | 0.848453 | 6.07E-60 | -1.69E-46 |
| MS.gene050961 | MS.gene65365 | 0.830156 | 3.44E-55 | -1.69E-46 |
| MS.gene050961 | MS.gene67131 | 0.811816 | 5.80E-51 | -1.69E-46 |
| MS.gene050961 | MS.gene68141 | 0.842708 | 2.19E-58 | -1.69E-46 |
| MS.gene050961 | MS.gene69682 | 0.819376 | 1.20E-52 | -1.69E-46 |
| MS.gene050961 | MS.gene69852 | 0.834846 | 2.37E-56 | -1.69E-46 |
| MS.gene050961 | MS.gene69933 | 0.845001 | 5.33E-59 | -1.69E-46 |
| MS.gene050961 | MS.gene70365 | 0.808336 | 3.26E-50 | -1.69E-46 |
| MS.gene050961 | MS.gene70367 | 0.806158 | 9.42E-50 | -1.69E-46 |
| MS.gene050961 | MS.gene70817 | 0.828307 | 9.67E-55 | -1.69E-46 |
| MS.gene050961 | MS.gene70887 | 0.803218 | 3.87E-49 | -1.69E-46 |
| MS.gene050961 | MS.gene73393 | 0.80651 | 7.94E-50 | -1.69E-46 |
| MS.gene050961 | MS.gene73644 | 0.811009 | 8.67E-51 | -1.69E-46 |
| MS.gene050961 | MS.gene73869 | 0.813785 | 2.15E-51 | -1.69E-46 |
| MS.gene050961 | MS.gene76159 | 0.828483 | 8.77E-55 | -1.69E-46 |
| MS.gene050961 | MS.gene76262 | 0.806181 | 9.32E-50 | -1.69E-46 |
| MS.gene050961 | MS.gene76310 | 0.802512 | 5.42E-49 | -1.69E-46 |
| MS.gene050961 | MS.gene78383 | 0.8238 | 1.14E-53 | -1.69E-46 |
| MS.gene050961 | MS.gene80217 | 0.80526 | 1.45E-49 | -1.69E-46 |
| MS.gene050961 | MS.gene80821 | 0.808503 | 3.00E-50 | -1.69E-46 |
| MS.gene050961 | MS.gene82743 | 0.840156 | 1.03E-57 | -1.69E-46 |
| MS.gene050961 | MS.gene83853 | 0.813224 | 2.85E-51 | -1.69E-46 |
| MS.gene050961 | MS.gene84733 | 0.828689 | 7.82E-55 | -1.69E-46 |
| MS.gene050961 | MS.gene84734 | 0.831065 | 2.06E-55 | -1.69E-46 |
| MS.gene050961 | MS.gene84866 | 0.825143 | 5.51E-54 | -1.69E-46 |
| MS.gene050961 | MS.gene89082 | 0.802735 | 4.87E-49 | -1.69E-46 |
| MS.gene050961 | MS.gene89084 | 0.823279 | 1.51E-53 | -1.69E-46 |
| MS.gene050961 | MS.gene89702 | 0.839494 | 1.53E-57 | -1.69E-46 |
| MS.gene050961 | MS.gene90181 | 0.805626 | 1.22E-49 | -1.69E-46 |
| MS.gene050961 | MS.gene90248 | 0.80796 | 3.92E-50 | -1.69E-46 |
| MS.gene050961 | MS.gene90362 | 0.804435 | 2.16E-49 | -1.69E-46 |
| MS.gene050961 | MS.gene90939 | 0.807434 | 5.06E-50 | -1.69E-46 |
| MS.gene050961 | MS.gene92076 | 0.848673 | 5.28E-60 | -1.69E-46 |
| MS.gene050961 | MS.gene93160 | 0.829735 | 4.36E-55 | -1.69E-46 |
| MS.gene050961 | MS.gene93163 | 0.826404 | 2.76E-54 | -1.69E-46 |
| MS.gene050961 | MS.gene93424 | 0.833248 | 5.95E-56 | -1.69E-46 |
| MS.gene050961 | MS.gene93812 | 0.813233 | 2.84E-51 | -1.69E-46 |
| MS.gene050961 | MS.gene99191 | 0.805678 | 1.19E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050961.t1 | MTR_7g112000 | 78.571 | 546 | 87 | 6 | 1 | 536 | 1 | 526 | 0.0 | 840 |
| MS.gene050961.t1 | MTR_7g111980 | 49.587 | 484 | 205 | 14 | 86 | 535 | 6 | 484 | 4.92e-123 | 370 |
| MS.gene050961.t1 | MTR_7g111980 | 49.587 | 484 | 205 | 14 | 86 | 535 | 89 | 567 | 2.37e-122 | 371 |
| MS.gene050961.t1 | MTR_7g111960 | 37.407 | 540 | 291 | 19 | 17 | 522 | 21 | 547 | 2.38e-83 | 270 |
| MS.gene050961.t1 | MTR_4g128600 | 40.060 | 332 | 186 | 8 | 51 | 372 | 51 | 379 | 2.56e-71 | 240 |
| MS.gene050961.t1 | MTR_2g011810 | 37.249 | 349 | 199 | 9 | 51 | 385 | 54 | 396 | 9.32e-69 | 233 |
| MS.gene050961.t1 | MTR_4g090970 | 37.861 | 346 | 201 | 8 | 51 | 385 | 53 | 395 | 2.67e-68 | 231 |
| MS.gene050961.t1 | MTR_2g450080 | 35.248 | 383 | 231 | 9 | 20 | 388 | 17 | 396 | 1.91e-66 | 226 |
| MS.gene050961.t1 | MTR_8g104490 | 37.340 | 391 | 228 | 10 | 21 | 399 | 18 | 403 | 1.08e-65 | 221 |
| MS.gene050961.t1 | MTR_8g104490 | 41.049 | 324 | 178 | 9 | 84 | 399 | 20 | 338 | 5.82e-64 | 215 |
| MS.gene050961.t1 | MTR_4g106810 | 32.278 | 474 | 277 | 17 | 81 | 522 | 74 | 535 | 5.83e-63 | 215 |
| MS.gene050961.t1 | MTR_6g083730 | 37.931 | 348 | 203 | 8 | 52 | 389 | 51 | 395 | 1.85e-62 | 213 |
| MS.gene050961.t1 | MTR_8g104510 | 37.666 | 377 | 218 | 10 | 35 | 399 | 32 | 403 | 2.91e-62 | 212 |
| MS.gene050961.t1 | MTR_6g083320 | 41.129 | 248 | 136 | 4 | 52 | 290 | 51 | 297 | 7.44e-53 | 185 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050961.t1 | AT5G57580 | 40.237 | 338 | 179 | 8 | 51 | 372 | 49 | 379 | 7.79e-72 | 241 |
| MS.gene050961.t1 | AT5G26920 | 37.533 | 381 | 205 | 11 | 19 | 381 | 3 | 368 | 1.34e-71 | 235 |
| MS.gene050961.t1 | AT5G26920 | 35.294 | 425 | 227 | 13 | 19 | 424 | 3 | 398 | 2.08e-70 | 236 |
| MS.gene050961.t1 | AT2G18750 | 37.879 | 330 | 194 | 6 | 51 | 372 | 55 | 381 | 7.68e-70 | 236 |
| MS.gene050961.t1 | AT2G18750 | 37.879 | 330 | 194 | 6 | 51 | 372 | 55 | 381 | 7.68e-70 | 236 |
| MS.gene050961.t1 | AT2G18750 | 37.879 | 330 | 194 | 6 | 51 | 372 | 55 | 381 | 7.68e-70 | 236 |
| MS.gene050961.t1 | AT4G25800 | 38.462 | 351 | 194 | 9 | 51 | 385 | 38 | 382 | 2.69e-69 | 234 |
| MS.gene050961.t1 | AT4G25800 | 38.462 | 351 | 194 | 9 | 51 | 385 | 38 | 382 | 2.69e-69 | 234 |
| MS.gene050961.t1 | AT4G31000 | 36.782 | 348 | 208 | 7 | 51 | 390 | 49 | 392 | 3.30e-67 | 227 |
| MS.gene050961.t1 | AT5G26920 | 34.670 | 424 | 223 | 13 | 19 | 424 | 3 | 390 | 4.35e-66 | 224 |
| MS.gene050961.t1 | AT1G73805 | 40.270 | 370 | 191 | 14 | 32 | 389 | 31 | 382 | 1.92e-63 | 214 |
| MS.gene050961.t1 | AT5G62570 | 35.279 | 377 | 218 | 11 | 16 | 381 | 2 | 363 | 1.22e-61 | 211 |
| MS.gene050961.t1 | AT5G62570 | 36.950 | 341 | 200 | 9 | 52 | 383 | 46 | 380 | 2.92e-61 | 210 |
| MS.gene050961.t1 | AT5G62570 | 38.438 | 320 | 182 | 9 | 52 | 362 | 46 | 359 | 3.40e-61 | 206 |
| MS.gene050961.t1 | AT2G24300 | 33.744 | 406 | 247 | 10 | 51 | 439 | 45 | 445 | 5.49e-61 | 211 |
| MS.gene050961.t1 | AT2G24300 | 33.744 | 406 | 247 | 10 | 51 | 439 | 49 | 449 | 6.89e-61 | 211 |
| MS.gene050961.t1 | AT2G24300 | 34.795 | 365 | 221 | 9 | 87 | 439 | 39 | 398 | 6.19e-60 | 207 |
| MS.gene050961.t1 | AT4G31000 | 34.211 | 342 | 197 | 8 | 57 | 390 | 50 | 371 | 1.76e-54 | 192 |
| MS.gene050961.t1 | AT5G62570 | 41.564 | 243 | 135 | 4 | 52 | 290 | 46 | 285 | 9.28e-51 | 176 |
Find 115 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTATCTTTGACCCTAAA+AGG | 0.177383 | 7.1:-3887053 | None:intergenic |
| TGTGCACTTGATGGTGAATT+TGG | 0.216175 | 7.1:+3886795 | MS.gene050961:CDS |
| AGCACGGAGGGAAATGTTTC+TGG | 0.220065 | 7.1:-3887183 | None:intergenic |
| ATCTTACACCACACTGCTTT+TGG | 0.264115 | 7.1:-3888902 | None:intergenic |
| ATTAATAAAACACAACTCTA+AGG | 0.270654 | 7.1:-3886634 | None:intergenic |
| CCTATGTCTGGCACTGGTTC+AGG | 0.279070 | 7.1:-3888659 | None:intergenic |
| GTTAATGAGGCTGGCAAATC+TGG | 0.282312 | 7.1:+3886603 | MS.gene050961:CDS |
| CACTAGTAAAGTTCCTATTC+AGG | 0.307453 | 7.1:+3885895 | MS.gene050961:CDS |
| AGCAGTGTGGTGTAAGATTT+TGG | 0.312366 | 7.1:+3888907 | MS.gene050961:CDS |
| ACCTTGAAGATTGGAGCTCT+TGG | 0.340354 | 7.1:-3886273 | None:intergenic |
| TATACATGCAGCCAGGCTTA+TGG | 0.346862 | 7.1:-3888150 | None:intergenic |
| GAATGACCACCTTGTGTAAC+TGG | 0.352383 | 7.1:-3888752 | None:intergenic |
| ATGTACCCGTTACAGAATTA+AGG | 0.352946 | 7.1:-3888865 | None:intergenic |
| GCAAAATGGAGAAAACATTA+AGG | 0.381257 | 7.1:+3887016 | MS.gene050961:CDS |
| TCTTTACTGATAATTCTAGA+TGG | 0.382196 | 7.1:+3886955 | MS.gene050961:CDS |
| ATACCTGATTGGTGCTTGTT+TGG | 0.383490 | 7.1:-3885942 | None:intergenic |
| CTTTACTGTTATGAGACAAT+TGG | 0.386485 | 7.1:+3887831 | MS.gene050961:CDS |
| TTTAGTAAAGCTTCATCAAC+TGG | 0.387419 | 7.1:-3888125 | None:intergenic |
| GAATTCCTTAATTCTGTAAC+GGG | 0.390082 | 7.1:+3888860 | MS.gene050961:CDS |
| ATAGCATTGAATAGCAATAT+TGG | 0.390446 | 7.1:-3887858 | None:intergenic |
| TCCAAGAGCTCCAATCTTCA+AGG | 0.401863 | 7.1:+3886272 | MS.gene050961:CDS |
| CCATGGAATTCACACTGTTA+AGG | 0.409131 | 7.1:+3887273 | MS.gene050961:CDS |
| GGAGTCAAAGCTGTGCAAAA+TGG | 0.409392 | 7.1:+3887002 | MS.gene050961:CDS |
| GATCTTGTGACAATGATGAT+TGG | 0.410580 | 7.1:+3886817 | MS.gene050961:CDS |
| TGTGGTATGTCTCCTATGTC+TGG | 0.416366 | 7.1:-3888671 | None:intergenic |
| TTTACTGTTATGAGACAATT+GGG | 0.419841 | 7.1:+3887832 | MS.gene050961:CDS |
| TTGAAGGGGTCGTTCATCAT+TGG | 0.427765 | 7.1:-3886700 | None:intergenic |
| TTGATGAAAATTGCTAAAGA+TGG | 0.432333 | 7.1:+3887226 | MS.gene050961:CDS |
| ACCCTCTCTCCAACCAATAG+TGG | 0.433799 | 7.1:-3886891 | None:intergenic |
| ATAGAGATCTGTGCACTTGA+TGG | 0.439768 | 7.1:+3886786 | MS.gene050961:CDS |
| CTAGATTTAGAATCCTGAAT+AGG | 0.450367 | 7.1:-3885908 | None:intergenic |
| GTCTTGGAAACTTTCATTCG+AGG | 0.454610 | 7.1:+3886092 | MS.gene050961:CDS |
| CGTGCTTGAATGATGATGTT+TGG | 0.457684 | 7.1:+3887200 | MS.gene050961:CDS |
| ATGCTGGGCGTGAGAGCCTC+TGG | 0.465592 | 7.1:-3887927 | None:intergenic |
| ACGAATTTGATGCAGAGAAA+AGG | 0.477102 | 7.1:+3886581 | MS.gene050961:intron |
| CAGTTCGGAGCTCCAGTTCA+AGG | 0.477807 | 7.1:+3888185 | MS.gene050961:CDS |
| CTCTATCTTTATTGAGGACA+AGG | 0.481528 | 7.1:-3886769 | None:intergenic |
| AATACATGTATATACCTGAT+TGG | 0.482459 | 7.1:-3885953 | None:intergenic |
| AAAACACAACTCTAAGGGTC+TGG | 0.487434 | 7.1:-3886628 | None:intergenic |
| CAAGTTGCTCTATATGATGT+TGG | 0.489331 | 7.1:+3886720 | MS.gene050961:CDS |
| ATATGTTGCAGACCTTGAAC+TGG | 0.491841 | 7.1:-3888197 | None:intergenic |
| ATCAATGAATCTTCATTACA+TGG | 0.491857 | 7.1:+3887316 | MS.gene050961:CDS |
| GCCACTATTGGTTGGAGAGA+GGG | 0.492108 | 7.1:+3886890 | MS.gene050961:CDS |
| TATGTGGAGATGCAGATGTT+TGG | 0.492130 | 7.1:+3887738 | MS.gene050961:intron |
| CATCATATAGAGCAACTTGA+AGG | 0.495387 | 7.1:-3886716 | None:intergenic |
| AGATGGTAAAGAGCCACTAT+TGG | 0.496080 | 7.1:+3886878 | MS.gene050961:CDS |
| ACAGATCTCTATCTTTATTG+AGG | 0.502451 | 7.1:-3886775 | None:intergenic |
| CCTTAACAGTGTGAATTCCA+TGG | 0.504428 | 7.1:-3887273 | None:intergenic |
| TAAATTTATACCTTCATGCT+GGG | 0.505216 | 7.1:-3887942 | None:intergenic |
| ATGTCTCCTATGTCTGGCAC+TGG | 0.505649 | 7.1:-3888665 | None:intergenic |
| TGAGGAAGGTTACAGCTGGC+AGG | 0.507106 | 7.1:+3888954 | MS.gene050961:CDS |
| AATGCTATCTACAAACTTGT+GGG | 0.508181 | 7.1:+3887873 | MS.gene050961:CDS |
| ATAAATTTATACCTTCATGC+TGG | 0.509328 | 7.1:-3887943 | None:intergenic |
| CAATGCTATCTACAAACTTG+TGG | 0.510388 | 7.1:+3887872 | MS.gene050961:CDS |
| GCAAGATTCAGAATAAGTCT+TGG | 0.511326 | 7.1:+3887760 | MS.gene050961:CDS |
| TGAATTCCTTAATTCTGTAA+CGG | 0.512284 | 7.1:+3888859 | MS.gene050961:CDS |
| TTACCAAACAAGCACCAATC+AGG | 0.513446 | 7.1:+3885939 | MS.gene050961:CDS |
| CATGGGAAGAGAGGCGCTTG+TGG | 0.515894 | 7.1:-3887255 | None:intergenic |
| ATCATCAACAACACACGACT+TGG | 0.516898 | 7.1:-3887802 | None:intergenic |
| ATGCAGAGAAAAGGTTAATG+AGG | 0.520369 | 7.1:+3886590 | MS.gene050961:intron |
| AGAGAAAAGGTTAATGAGGC+TGG | 0.522837 | 7.1:+3886594 | MS.gene050961:intron |
| CACAAGCGCCTCTCTTCCCA+TGG | 0.528668 | 7.1:+3887256 | MS.gene050961:CDS |
| ATACAATCTGCAGGACAGTT+CGG | 0.545478 | 7.1:+3888170 | MS.gene050961:CDS |
| GAAATAGGTAAGAGAGGTGG+TGG | 0.545642 | 7.1:+3886240 | MS.gene050961:intron |
| TCTAAGTCAATAGTCAATGA+TGG | 0.548532 | 7.1:+3886744 | MS.gene050961:CDS |
| CCTGAACCAGTGCCAGACAT+AGG | 0.550996 | 7.1:+3888659 | MS.gene050961:CDS |
| TTTGGTAGAAATCGTGAAGC+GGG | 0.551849 | 7.1:+3888073 | MS.gene050961:CDS |
| GGCTCTCACGCCCAGCATGA+AGG | 0.552026 | 7.1:+3887932 | MS.gene050961:CDS |
| GGAAACTTTCATTCGAGGAG+TGG | 0.553231 | 7.1:+3886097 | MS.gene050961:CDS |
| TAATGGTCACAATTCCGTCT+TGG | 0.556758 | 7.1:+3886076 | MS.gene050961:CDS |
| ATACATGGTTGAACATAGCC+TGG | 0.571247 | 7.1:-3888608 | None:intergenic |
| CTTAACAGTGTGAATTCCAT+GGG | 0.572345 | 7.1:-3887272 | None:intergenic |
| TTTACTAAACTCCATAAGCC+TGG | 0.573032 | 7.1:+3888139 | MS.gene050961:CDS |
| ATGGGGAATATCAGTGAGGA+AGG | 0.573698 | 7.1:+3888940 | MS.gene050961:CDS |
| GGTAAAGAGCCACTATTGGT+TGG | 0.573749 | 7.1:+3886882 | MS.gene050961:CDS |
| GCTGCATGTATACAATCTGC+AGG | 0.574643 | 7.1:+3888161 | MS.gene050961:CDS |
| TTCCTCCTCTTGATACAACA+TGG | 0.574962 | 7.1:+3888795 | MS.gene050961:CDS |
| CATCATCATTCAAGCACGGA+GGG | 0.575885 | 7.1:-3887195 | None:intergenic |
| ATCATATAGAGCAACTTGAA+GGG | 0.577434 | 7.1:-3886715 | None:intergenic |
| TTAATAAAACACAACTCTAA+GGG | 0.578436 | 7.1:-3886633 | None:intergenic |
| AATTCCCATGTTGTATCAAG+AGG | 0.581818 | 7.1:-3888800 | None:intergenic |
| AGCCACTATTGGTTGGAGAG+AGG | 0.585245 | 7.1:+3886889 | MS.gene050961:CDS |
| CAGATTGTATACATGCAGCC+AGG | 0.588136 | 7.1:-3888157 | None:intergenic |
| AATAAATTACGTGAAAGAGA+TGG | 0.588816 | 7.1:+3886861 | MS.gene050961:CDS |
| CGGAGGGAAATGTTTCTGGT+AGG | 0.589550 | 7.1:-3887179 | None:intergenic |
| TGTGAATTCCATGGGAAGAG+AGG | 0.590779 | 7.1:-3887264 | None:intergenic |
| TCAGTGAGGAAGGTTACAGC+TGG | 0.591106 | 7.1:+3888950 | MS.gene050961:CDS |
| CAGGATTCTAAATCTAGTCA+TGG | 0.592340 | 7.1:+3885914 | MS.gene050961:CDS |
| TCAATGAATCTTCATTACAT+GGG | 0.595745 | 7.1:+3887317 | MS.gene050961:CDS |
| AAATGGAGAAAACATTAAGG+AGG | 0.607132 | 7.1:+3887019 | MS.gene050961:CDS |
| CTTCCTGAAATAGGTAAGAG+AGG | 0.613677 | 7.1:+3886234 | MS.gene050961:intron |
| TCCCATGTTGTATCAAGAGG+AGG | 0.619268 | 7.1:-3888797 | None:intergenic |
| TATATTGAAAGAGATAGTCA+TGG | 0.621398 | 7.1:+3888719 | MS.gene050961:CDS |
| TCATATAGAGCAACTTGAAG+GGG | 0.631197 | 7.1:-3886714 | None:intergenic |
| TCTATCTTTATTGAGGACAA+GGG | 0.631225 | 7.1:-3886768 | None:intergenic |
| CGCTTTCCAGTTACACAAGG+TGG | 0.631517 | 7.1:+3888746 | MS.gene050961:CDS |
| CATACCACAAAACAATCATG+TGG | 0.632022 | 7.1:+3888685 | MS.gene050961:CDS |
| TCCTCCTCTTGATACAACAT+GGG | 0.634734 | 7.1:+3888796 | MS.gene050961:CDS |
| AATGGAGAAAACATTAAGGA+GGG | 0.635759 | 7.1:+3887020 | MS.gene050961:CDS |
| CAATGAATCTTCATTACATG+GGG | 0.638374 | 7.1:+3887318 | MS.gene050961:CDS |
| ACATATGAAGTAGAGATACA+TGG | 0.644934 | 7.1:-3888623 | None:intergenic |
| TCGAATGAAAGTTTCCAAGA+CGG | 0.646268 | 7.1:-3886090 | None:intergenic |
| TAACGGGTACATCCAGCAGT+GGG | 0.667423 | 7.1:+3888876 | MS.gene050961:CDS |
| ATTTGGTAGAAATCGTGAAG+CGG | 0.672652 | 7.1:+3888072 | MS.gene050961:CDS |
| CAAACATCATCATTCAAGCA+CGG | 0.676398 | 7.1:-3887199 | None:intergenic |
| TCACGCTTTCCAGTTACACA+AGG | 0.677418 | 7.1:+3888743 | MS.gene050961:CDS |
| GTAACGGGTACATCCAGCAG+TGG | 0.683061 | 7.1:+3888875 | MS.gene050961:CDS |
| GGAAGGTTACAGCTGGCAGG+AGG | 0.688084 | 7.1:+3888957 | MS.gene050961:CDS |
| TTTAGGGTCAAAGATAACAG+AGG | 0.702670 | 7.1:+3887056 | MS.gene050961:CDS |
| CCTGAAATAGGTAAGAGAGG+TGG | 0.708938 | 7.1:+3886237 | MS.gene050961:intron |
| ATACCACAAAACAATCATGT+GGG | 0.711078 | 7.1:+3888686 | MS.gene050961:CDS |
| ACATCATCATTCAAGCACGG+AGG | 0.723427 | 7.1:-3887196 | None:intergenic |
| ACAAAATTACTATCTACCAG+AGG | 0.728103 | 7.1:+3887911 | MS.gene050961:CDS |
| TCAAATGGGGAATATCAGTG+AGG | 0.743416 | 7.1:+3888936 | MS.gene050961:CDS |
| GTGGGAAACCAAAAGCAGTG+TGG | 0.743980 | 7.1:+3888894 | MS.gene050961:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGTATAATACTTTTTTT+TGG | + | chr7.1:3885980-3885999 | MS.gene050961:intron | 10.0% |
| !! | AACAATAATAATGTTGAATA+CGG | - | chr7.1:3886546-3886565 | None:intergenic | 15.0% |
| !! | ACAAATAGAAAAATAAACAA+CGG | - | chr7.1:3888266-3888285 | None:intergenic | 15.0% |
| !! | ATAGATTTAAAGAAAAACTT+TGG | + | chr7.1:3887992-3888011 | MS.gene050961:intron | 15.0% |
| !! | ATGGAATAATATTAATATTG+TGG | - | chr7.1:3888422-3888441 | None:intergenic | 15.0% |
| !! | CAAGAATAAATTAAAAACAA+GGG | - | chr7.1:3886189-3886208 | None:intergenic | 15.0% |
| !! | TCAAGAATAAATTAAAAACA+AGG | - | chr7.1:3886190-3886209 | None:intergenic | 15.0% |
| !! | TCTATATCTATTGTAAAATT+GGG | - | chr7.1:3886451-3886470 | None:intergenic | 15.0% |
| !! | ATTAATAAAACACAACTCTA+AGG | - | chr7.1:3886637-3886656 | None:intergenic | 20.0% |
| !! | CAAATAGAAAAATAAACAAC+GGG | - | chr7.1:3888265-3888284 | None:intergenic | 20.0% |
| !! | CACTTTAAATTTAATCTTCT+TGG | + | chr7.1:3886009-3886028 | MS.gene050961:intron | 20.0% |
| !! | GTCTATATCTATTGTAAAAT+TGG | - | chr7.1:3886452-3886471 | None:intergenic | 20.0% |
| !! | GTTATGTGATAAAAACTTTA+AGG | + | chr7.1:3886051-3886070 | MS.gene050961:CDS | 20.0% |
| !! | TAGAAGAGGTAAATTATATA+GGG | - | chr7.1:3887522-3887541 | None:intergenic | 20.0% |
| !! | TATGTTAAGACAAGTAAAAA+TGG | + | chr7.1:3887432-3887451 | MS.gene050961:intron | 20.0% |
| !! | TGCAATATAAAATACAAGTA+AGG | - | chr7.1:3888326-3888345 | None:intergenic | 20.0% |
| !! | TTAATAAAACACAACTCTAA+GGG | - | chr7.1:3886636-3886655 | None:intergenic | 20.0% |
| !!! | ATAAAAACTTTAAGGACTAA+TGG | + | chr7.1:3886059-3886078 | MS.gene050961:CDS | 20.0% |
| !!! | ATTTTATAAAATTACTGAGC+AGG | + | chr7.1:3888030-3888049 | MS.gene050961:intron | 20.0% |
| !!! | GTTAATTGGATATTTTTATG+TGG | + | chr7.1:3887722-3887741 | MS.gene050961:intron | 20.0% |
| !!! | TGAAATATTTTACCATATCT+TGG | + | chr7.1:3888564-3888583 | MS.gene050961:intron | 20.0% |
| !!! | TTGACAACATATTTTGAATA+TGG | - | chr7.1:3887972-3887991 | None:intergenic | 20.0% |
| ! | AAAAAACAAACCTTGAAGAT+TGG | - | chr7.1:3886285-3886304 | None:intergenic | 25.0% |
| ! | AATAAATTACGTGAAAGAGA+TGG | + | chr7.1:3886861-3886880 | MS.gene050961:CDS | 25.0% |
| ! | AATAATGTTGAATACGGTAA+AGG | - | chr7.1:3886540-3886559 | None:intergenic | 25.0% |
| ! | AATACATGTATATACCTGAT+TGG | - | chr7.1:3885956-3885975 | None:intergenic | 25.0% |
| ! | AGGTTTGTCAAAGTTTAATA+TGG | - | chr7.1:3888441-3888460 | None:intergenic | 25.0% |
| ! | ATAAATTTATACCTTCATGC+TGG | - | chr7.1:3887946-3887965 | None:intergenic | 25.0% |
| ! | ATAATGTTGAATACGGTAAA+GGG | - | chr7.1:3886539-3886558 | None:intergenic | 25.0% |
| ! | ATCAATGAATCTTCATTACA+TGG | + | chr7.1:3887316-3887335 | MS.gene050961:CDS | 25.0% |
| ! | ATGAAAATATTATGGTGCTT+TGG | + | chr7.1:3886423-3886442 | MS.gene050961:intron | 25.0% |
| ! | CACCTTCTATGAAAATATTA+TGG | + | chr7.1:3886415-3886434 | MS.gene050961:intron | 25.0% |
| ! | CCAATAACTACTAATAAAAG+TGG | + | chr7.1:3888287-3888306 | MS.gene050961:intron | 25.0% |
| ! | CTAGAAGAGGTAAATTATAT+AGG | - | chr7.1:3887523-3887542 | None:intergenic | 25.0% |
| ! | GTAATTCAATATTTAGTGCA+TGG | + | chr7.1:3886340-3886359 | MS.gene050961:intron | 25.0% |
| ! | GTATTCAATTCAAGCATAAA+AGG | + | chr7.1:3888239-3888258 | MS.gene050961:intron | 25.0% |
| ! | TAAATTTATACCTTCATGCT+GGG | - | chr7.1:3887945-3887964 | None:intergenic | 25.0% |
| ! | TATATTGAAAGAGATAGTCA+TGG | + | chr7.1:3888719-3888738 | MS.gene050961:CDS | 25.0% |
| ! | TCAATGAATCTTCATTACAT+GGG | + | chr7.1:3887317-3887336 | MS.gene050961:CDS | 25.0% |
| ! | TCTTTACTGATAATTCTAGA+TGG | + | chr7.1:3886955-3886974 | MS.gene050961:CDS | 25.0% |
| ! | TGAATTCCTTAATTCTGTAA+CGG | + | chr7.1:3888859-3888878 | MS.gene050961:CDS | 25.0% |
| ! | TGTAAAATGCGTATGTTAAT+TGG | + | chr7.1:3887708-3887727 | MS.gene050961:intron | 25.0% |
| ! | TTATCGTATGTGTTAATGAT+TGG | + | chr7.1:3887368-3887387 | MS.gene050961:intron | 25.0% |
| ! | TTCATTTATCTTCCTGAAAT+AGG | + | chr7.1:3886225-3886244 | MS.gene050961:intron | 25.0% |
| ! | TTGATGAAAATTGCTAAAGA+TGG | + | chr7.1:3887226-3887245 | MS.gene050961:CDS | 25.0% |
| ! | TTTACTGTTATGAGACAATT+GGG | + | chr7.1:3887832-3887851 | MS.gene050961:CDS | 25.0% |
| ! | TTTGTTCTATAATGTTGAGA+AGG | + | chr7.1:3886143-3886162 | MS.gene050961:intron | 25.0% |
| !! | AAGTTTTTATCACATAACCA+AGG | - | chr7.1:3886049-3886068 | None:intergenic | 25.0% |
| !! | ATAGCATTGAATAGCAATAT+TGG | - | chr7.1:3887861-3887880 | None:intergenic | 25.0% |
| !! | CACCATAATATTTTCATAGA+AGG | - | chr7.1:3886420-3886439 | None:intergenic | 25.0% |
| !! | TGTCTTATGACATGTAATTT+TGG | + | chr7.1:3887147-3887166 | MS.gene050961:intron | 25.0% |
| !! | TTATATCTCTTGTCCTATTT+TGG | + | chr7.1:3888510-3888529 | MS.gene050961:intron | 25.0% |
| !!! | AGTAAAGATGATTTTAGAGA+TGG | - | chr7.1:3886943-3886962 | None:intergenic | 25.0% |
| !!! | CCACTTTTATTAGTAGTTAT+TGG | - | chr7.1:3888290-3888309 | None:intergenic | 25.0% |
| !!! | GAATGAAAAAGTTGATATTC+TGG | + | chr7.1:3887557-3887576 | MS.gene050961:intron | 25.0% |
| AAATGGAGAAAACATTAAGG+AGG | + | chr7.1:3887019-3887038 | MS.gene050961:CDS | 30.0% | |
| AATGCTATCTACAAACTTGT+GGG | + | chr7.1:3887873-3887892 | MS.gene050961:CDS | 30.0% | |
| AATGGAGAAAACATTAAGGA+GGG | + | chr7.1:3887020-3887039 | MS.gene050961:CDS | 30.0% | |
| ACAAAATTACTATCTACCAG+AGG | + | chr7.1:3887911-3887930 | MS.gene050961:CDS | 30.0% | |
| ACAGATCTCTATCTTTATTG+AGG | - | chr7.1:3886778-3886797 | None:intergenic | 30.0% | |
| ACATATGAAGTAGAGATACA+TGG | - | chr7.1:3888626-3888645 | None:intergenic | 30.0% | |
| AGGGTTATTACTCTCAAAAA+TGG | + | chr7.1:3886909-3886928 | MS.gene050961:CDS | 30.0% | |
| ATACCACAAAACAATCATGT+GGG | + | chr7.1:3888686-3888705 | MS.gene050961:CDS | 30.0% | |
| ATATCAGACCGAGTAAAAAT+TGG | - | chr7.1:3886675-3886694 | None:intergenic | 30.0% | |
| ATCATATAGAGCAACTTGAA+GGG | - | chr7.1:3886718-3886737 | None:intergenic | 30.0% | |
| CAATGAATCTTCATTACATG+GGG | + | chr7.1:3887318-3887337 | MS.gene050961:CDS | 30.0% | |
| CTTTACTGTTATGAGACAAT+TGG | + | chr7.1:3887831-3887850 | MS.gene050961:CDS | 30.0% | |
| GAAGGATTGTTTAAATTGCA+AGG | + | chr7.1:3886161-3886180 | MS.gene050961:intron | 30.0% | |
| GAATTCCTTAATTCTGTAAC+GGG | + | chr7.1:3888860-3888879 | MS.gene050961:CDS | 30.0% | |
| GCAAAATGGAGAAAACATTA+AGG | + | chr7.1:3887016-3887035 | MS.gene050961:CDS | 30.0% | |
| TAACATATGCAATACTCCAT+AGG | - | chr7.1:3887419-3887438 | None:intergenic | 30.0% | |
| TCTAAGTCAATAGTCAATGA+TGG | + | chr7.1:3886744-3886763 | MS.gene050961:CDS | 30.0% | |
| TCTATCTTTATTGAGGACAA+GGG | - | chr7.1:3886771-3886790 | None:intergenic | 30.0% | |
| TTTAGTAAAGCTTCATCAAC+TGG | - | chr7.1:3888128-3888147 | None:intergenic | 30.0% | |
| TTTGCATATTGTCTATCCTA+TGG | + | chr7.1:3887400-3887419 | MS.gene050961:intron | 30.0% | |
| ! | AGGTCTATGTTTTATCTTGT+GGG | - | chr7.1:3888356-3888375 | None:intergenic | 30.0% |
| ! | CTACATCGATTATTTCACTT+TGG | - | chr7.1:3887666-3887685 | None:intergenic | 30.0% |
| ! | CTAGATTTAGAATCCTGAAT+AGG | - | chr7.1:3885911-3885930 | None:intergenic | 30.0% |
| ! | TACCTGATCCAATTTTTACT+CGG | + | chr7.1:3886664-3886683 | MS.gene050961:CDS | 30.0% |
| ! | TATTTTACCATATCTTGGAC+AGG | + | chr7.1:3888569-3888588 | MS.gene050961:intron | 30.0% |
| !!! | AGATTTTGGCTGTTATCAAA+TGG | + | chr7.1:3888921-3888940 | MS.gene050961:CDS | 30.0% |
| !!! | ATTTTGGCTGTTATCAAATG+GGG | + | chr7.1:3888923-3888942 | MS.gene050961:CDS | 30.0% |
| !!! | GATTTTGGCTGTTATCAAAT+GGG | + | chr7.1:3888922-3888941 | MS.gene050961:CDS | 30.0% |
| AAATGTCCAACATTAAGAGC+AGG | - | chr7.1:3888541-3888560 | None:intergenic | 35.0% | |
| AATTCCCATGTTGTATCAAG+AGG | - | chr7.1:3888803-3888822 | None:intergenic | 35.0% | |
| ACGAATTTGATGCAGAGAAA+AGG | + | chr7.1:3886581-3886600 | MS.gene050961:intron | 35.0% | |
| ATGCAGAGAAAAGGTTAATG+AGG | + | chr7.1:3886590-3886609 | MS.gene050961:intron | 35.0% | |
| ATGTACCCGTTACAGAATTA+AGG | - | chr7.1:3888868-3888887 | None:intergenic | 35.0% | |
| ATTTGGTAGAAATCGTGAAG+CGG | + | chr7.1:3888072-3888091 | MS.gene050961:CDS | 35.0% | |
| CAAACATCATCATTCAAGCA+CGG | - | chr7.1:3887202-3887221 | None:intergenic | 35.0% | |
| CAAGTTGCTCTATATGATGT+TGG | + | chr7.1:3886720-3886739 | MS.gene050961:CDS | 35.0% | |
| CAATGCTATCTACAAACTTG+TGG | + | chr7.1:3887872-3887891 | MS.gene050961:CDS | 35.0% | |
| CACAAGATAAAACATAGACC+TGG | + | chr7.1:3888355-3888374 | MS.gene050961:intron | 35.0% | |
| CACTAGTAAAGTTCCTATTC+AGG | + | chr7.1:3885895-3885914 | MS.gene050961:CDS | 35.0% | |
| CAGGATTCTAAATCTAGTCA+TGG | + | chr7.1:3885914-3885933 | MS.gene050961:CDS | 35.0% | |
| CATACCACAAAACAATCATG+TGG | + | chr7.1:3888685-3888704 | MS.gene050961:CDS | 35.0% | |
| CATCATATAGAGCAACTTGA+AGG | - | chr7.1:3886719-3886738 | None:intergenic | 35.0% | |
| CTCTATCTTTATTGAGGACA+AGG | - | chr7.1:3886772-3886791 | None:intergenic | 35.0% | |
| CTGTTATCTTTGACCCTAAA+AGG | - | chr7.1:3887056-3887075 | None:intergenic | 35.0% | |
| CTTAACAGTGTGAATTCCAT+GGG | - | chr7.1:3887275-3887294 | None:intergenic | 35.0% | |
| GATCTTGTGACAATGATGAT+TGG | + | chr7.1:3886817-3886836 | MS.gene050961:CDS | 35.0% | |
| GCAAGATTCAGAATAAGTCT+TGG | + | chr7.1:3887760-3887779 | MS.gene050961:CDS | 35.0% | |
| GGACAGGTCAAAAAGAAATA+GGG | + | chr7.1:3888585-3888604 | MS.gene050961:intron | 35.0% | |
| GGTTAAGATGCAAAAAGTTC+AGG | + | chr7.1:3886976-3886995 | MS.gene050961:CDS | 35.0% | |
| GTTTAGTGAATGACACAGAA+AGG | - | chr7.1:3888461-3888480 | None:intergenic | 35.0% | |
| TCATATAGAGCAACTTGAAG+GGG | - | chr7.1:3886717-3886736 | None:intergenic | 35.0% | |
| TCGAATGAAAGTTTCCAAGA+CGG | - | chr7.1:3886093-3886112 | None:intergenic | 35.0% | |
| TGATACACCAAAATTTCACC+AGG | - | chr7.1:3888376-3888395 | None:intergenic | 35.0% | |
| TGGACAGGTCAAAAAGAAAT+AGG | + | chr7.1:3888584-3888603 | MS.gene050961:intron | 35.0% | |
| TTTACTAAACTCCATAAGCC+TGG | + | chr7.1:3888139-3888158 | MS.gene050961:CDS | 35.0% | |
| ! | ACATAGACCTGGTGAAATTT+TGG | + | chr7.1:3888366-3888385 | MS.gene050961:intron | 35.0% |
| ! | AGATGCAAAAAGTTCAGGTT+AGG | + | chr7.1:3886981-3887000 | MS.gene050961:CDS | 35.0% |
| ! | CAGGTCTATGTTTTATCTTG+TGG | - | chr7.1:3888357-3888376 | None:intergenic | 35.0% |
| ! | TGATTACTTCACTCTAGAAG+AGG | - | chr7.1:3887536-3887555 | None:intergenic | 35.0% |
| ! | TTTAGGGTCAAAGATAACAG+AGG | + | chr7.1:3887056-3887075 | MS.gene050961:CDS | 35.0% |
| ! | TTTTTGACCTGTCCAAGATA+TGG | - | chr7.1:3888579-3888598 | None:intergenic | 35.0% |
| !! | ATTTTGGTGTATCATGGCAT+TGG | + | chr7.1:3888382-3888401 | MS.gene050961:intron | 35.0% |
| !! | GGTGAAATTTTGGTGTATCA+TGG | + | chr7.1:3888376-3888395 | MS.gene050961:intron | 35.0% |
| !! | TCTTCTTGGTTATTTTGCAG+TGG | + | chr7.1:3886023-3886042 | MS.gene050961:intron | 35.0% |
| AGAGAAAAGGTTAATGAGGC+TGG | + | chr7.1:3886594-3886613 | MS.gene050961:intron | 40.0% | |
| AGATGGTAAAGAGCCACTAT+TGG | + | chr7.1:3886878-3886897 | MS.gene050961:CDS | 40.0% | |
| ATACAATCTGCAGGACAGTT+CGG | + | chr7.1:3888170-3888189 | MS.gene050961:CDS | 40.0% | |
| ATACATGGTTGAACATAGCC+TGG | - | chr7.1:3888611-3888630 | None:intergenic | 40.0% | |
| ATAGAGATCTGTGCACTTGA+TGG | + | chr7.1:3886786-3886805 | MS.gene050961:CDS | 40.0% | |
| ATATGTTGCAGACCTTGAAC+TGG | - | chr7.1:3888200-3888219 | None:intergenic | 40.0% | |
| ATCATCAACAACACACGACT+TGG | - | chr7.1:3887805-3887824 | None:intergenic | 40.0% | |
| CCATGGAATTCACACTGTTA+AGG | + | chr7.1:3887273-3887292 | MS.gene050961:CDS | 40.0% | |
| CCTTAACAGTGTGAATTCCA+TGG | - | chr7.1:3887276-3887295 | None:intergenic | 40.0% | |
| CTTCCTGAAATAGGTAAGAG+AGG | + | chr7.1:3886234-3886253 | MS.gene050961:intron | 40.0% | |
| GACCGAGTAAAAATTGGATC+AGG | - | chr7.1:3886669-3886688 | None:intergenic | 40.0% | |
| GTCTTGGAAACTTTCATTCG+AGG | + | chr7.1:3886092-3886111 | MS.gene050961:CDS | 40.0% | |
| TAATGGTCACAATTCCGTCT+TGG | + | chr7.1:3886076-3886095 | MS.gene050961:CDS | 40.0% | |
| TATGTGGAGATGCAGATGTT+TGG | + | chr7.1:3887738-3887757 | MS.gene050961:intron | 40.0% | |
| TCAAATGGGGAATATCAGTG+AGG | + | chr7.1:3888936-3888955 | MS.gene050961:CDS | 40.0% | |
| TCCAACATTAAGAGCAGGAT+TGG | - | chr7.1:3888536-3888555 | None:intergenic | 40.0% | |
| TCCTCCTCTTGATACAACAT+GGG | + | chr7.1:3888796-3888815 | MS.gene050961:CDS | 40.0% | |
| TCTTCTTTCTCTGCAGCATT+TGG | + | chr7.1:3888055-3888074 | MS.gene050961:intron | 40.0% | |
| TTACCAAACAAGCACCAATC+AGG | + | chr7.1:3885939-3885958 | MS.gene050961:CDS | 40.0% | |
| TTCCTCCTCTTGATACAACA+TGG | + | chr7.1:3888795-3888814 | MS.gene050961:CDS | 40.0% | |
| TTTGGTAGAAATCGTGAAGC+GGG | + | chr7.1:3888073-3888092 | MS.gene050961:CDS | 40.0% | |
| ! | AAAACACAACTCTAAGGGTC+TGG | - | chr7.1:3886631-3886650 | None:intergenic | 40.0% |
| ! | AGCAGTGTGGTGTAAGATTT+TGG | + | chr7.1:3888907-3888926 | MS.gene050961:CDS | 40.0% |
| ! | AGGGTAGAAGTCAACCTTTT+AGG | + | chr7.1:3887039-3887058 | MS.gene050961:CDS | 40.0% |
| ! | ATACCTGATTGGTGCTTGTT+TGG | - | chr7.1:3885945-3885964 | None:intergenic | 40.0% |
| ! | ATCTTACACCACACTGCTTT+TGG | - | chr7.1:3888905-3888924 | None:intergenic | 40.0% |
| ! | CGTGCTTGAATGATGATGTT+TGG | + | chr7.1:3887200-3887219 | MS.gene050961:CDS | 40.0% |
| ! | GGGTAGAAGTCAACCTTTTA+GGG | + | chr7.1:3887040-3887059 | MS.gene050961:CDS | 40.0% |
| !! | TGTGCACTTGATGGTGAATT+TGG | + | chr7.1:3886795-3886814 | MS.gene050961:CDS | 40.0% |
| ACATCATCATTCAAGCACGG+AGG | - | chr7.1:3887199-3887218 | None:intergenic | 45.0% | |
| ACCTTGAAGATTGGAGCTCT+TGG | - | chr7.1:3886276-3886295 | None:intergenic | 45.0% | |
| ATGGGGAATATCAGTGAGGA+AGG | + | chr7.1:3888940-3888959 | MS.gene050961:CDS | 45.0% | |
| CAGATTGTATACATGCAGCC+AGG | - | chr7.1:3888160-3888179 | None:intergenic | 45.0% | |
| CATCATCATTCAAGCACGGA+GGG | - | chr7.1:3887198-3887217 | None:intergenic | 45.0% | |
| CCACCTCTCTTACCTATTTC+AGG | - | chr7.1:3886240-3886259 | None:intergenic | 45.0% | |
| CCTGAAATAGGTAAGAGAGG+TGG | + | chr7.1:3886237-3886256 | MS.gene050961:intron | 45.0% | |
| GAAATAGGTAAGAGAGGTGG+TGG | + | chr7.1:3886240-3886259 | MS.gene050961:intron | 45.0% | |
| GAATGACCACCTTGTGTAAC+TGG | - | chr7.1:3888755-3888774 | None:intergenic | 45.0% | |
| GCCAATCCTGCTCTTAATGT+TGG | + | chr7.1:3888532-3888551 | MS.gene050961:intron | 45.0% | |
| GCTGCATGTATACAATCTGC+AGG | + | chr7.1:3888161-3888180 | MS.gene050961:CDS | 45.0% | |
| GGAAACTTTCATTCGAGGAG+TGG | + | chr7.1:3886097-3886116 | MS.gene050961:CDS | 45.0% | |
| GGAGTCAAAGCTGTGCAAAA+TGG | + | chr7.1:3887002-3887021 | MS.gene050961:CDS | 45.0% | |
| GGTAAAGAGCCACTATTGGT+TGG | + | chr7.1:3886882-3886901 | MS.gene050961:CDS | 45.0% | |
| GGTCAAAAAGAAATAGGGCC+AGG | + | chr7.1:3888590-3888609 | MS.gene050961:intron | 45.0% | |
| GTTAATGAGGCTGGCAAATC+TGG | + | chr7.1:3886603-3886622 | MS.gene050961:CDS | 45.0% | |
| TATACATGCAGCCAGGCTTA+TGG | - | chr7.1:3888153-3888172 | None:intergenic | 45.0% | |
| TCACGCTTTCCAGTTACACA+AGG | + | chr7.1:3888743-3888762 | MS.gene050961:CDS | 45.0% | |
| TCCAAGAGCTCCAATCTTCA+AGG | + | chr7.1:3886272-3886291 | MS.gene050961:CDS | 45.0% | |
| TCCCATGTTGTATCAAGAGG+AGG | - | chr7.1:3888800-3888819 | None:intergenic | 45.0% | |
| TGTGAATTCCATGGGAAGAG+AGG | - | chr7.1:3887267-3887286 | None:intergenic | 45.0% | |
| TGTGGTATGTCTCCTATGTC+TGG | - | chr7.1:3888674-3888693 | None:intergenic | 45.0% | |
| TTGAAGGGGTCGTTCATCAT+TGG | - | chr7.1:3886703-3886722 | None:intergenic | 45.0% | |
| !! | AGAGCAGGATTGGCCAAAAT+AGG | - | chr7.1:3888526-3888545 | None:intergenic | 45.0% |
| !! | GCTCCCACATGATTGTTTTG+TGG | - | chr7.1:3888692-3888711 | None:intergenic | 45.0% |
| !! | TGGTTATTTTGCAGTGGCCT+TGG | + | chr7.1:3886029-3886048 | MS.gene050961:intron | 45.0% |
| ACCCTCTCTCCAACCAATAG+TGG | - | chr7.1:3886894-3886913 | None:intergenic | 50.0% | |
| AGCACGGAGGGAAATGTTTC+TGG | - | chr7.1:3887186-3887205 | None:intergenic | 50.0% | |
| ATGTCTCCTATGTCTGGCAC+TGG | - | chr7.1:3888668-3888687 | None:intergenic | 50.0% | |
| CGCTTTCCAGTTACACAAGG+TGG | + | chr7.1:3888746-3888765 | MS.gene050961:CDS | 50.0% | |
| GTGGGAAACCAAAAGCAGTG+TGG | + | chr7.1:3888894-3888913 | MS.gene050961:CDS | 50.0% | |
| TCAGTGAGGAAGGTTACAGC+TGG | + | chr7.1:3888950-3888969 | MS.gene050961:CDS | 50.0% | |
| ! | AGCCACTATTGGTTGGAGAG+AGG | + | chr7.1:3886889-3886908 | MS.gene050961:CDS | 50.0% |
| ! | GCCACTATTGGTTGGAGAGA+GGG | + | chr7.1:3886890-3886909 | MS.gene050961:CDS | 50.0% |
| ! | TAACGGGTACATCCAGCAGT+GGG | + | chr7.1:3888876-3888895 | MS.gene050961:CDS | 50.0% |
| !! | CGGAGGGAAATGTTTCTGGT+AGG | - | chr7.1:3887182-3887201 | None:intergenic | 50.0% |
| !!! | TGCTTTTGGTTTCCCACTGC+TGG | - | chr7.1:3888891-3888910 | None:intergenic | 50.0% |
| CAGTTCGGAGCTCCAGTTCA+AGG | + | chr7.1:3888185-3888204 | MS.gene050961:CDS | 55.0% | |
| CCTGAACCAGTGCCAGACAT+AGG | + | chr7.1:3888659-3888678 | MS.gene050961:CDS | 55.0% | |
| TGAGGAAGGTTACAGCTGGC+AGG | + | chr7.1:3888954-3888973 | MS.gene050961:CDS | 55.0% | |
| !! | CCTATGTCTGGCACTGGTTC+AGG | - | chr7.1:3888662-3888681 | None:intergenic | 55.0% |
| !! | GTAACGGGTACATCCAGCAG+TGG | + | chr7.1:3888875-3888894 | MS.gene050961:CDS | 55.0% |
| CACAAGCGCCTCTCTTCCCA+TGG | + | chr7.1:3887256-3887275 | MS.gene050961:CDS | 60.0% | |
| GGAAGGTTACAGCTGGCAGG+AGG | + | chr7.1:3888957-3888976 | MS.gene050961:CDS | 60.0% | |
| !! | CATGGGAAGAGAGGCGCTTG+TGG | - | chr7.1:3887258-3887277 | None:intergenic | 60.0% |
| ATGCTGGGCGTGAGAGCCTC+TGG | - | chr7.1:3887930-3887949 | None:intergenic | 65.0% | |
| GGCTCTCACGCCCAGCATGA+AGG | + | chr7.1:3887932-3887951 | MS.gene050961:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 3885857 | 3888988 | 3885857 | ID=MS.gene050961 |
| chr7.1 | mRNA | 3885857 | 3888988 | 3885857 | ID=MS.gene050961.t1;Parent=MS.gene050961 |
| chr7.1 | exon | 3885857 | 3885960 | 3885857 | ID=MS.gene050961.t1.exon1;Parent=MS.gene050961.t1 |
| chr7.1 | CDS | 3885857 | 3885960 | 3885857 | ID=cds.MS.gene050961.t1;Parent=MS.gene050961.t1 |
| chr7.1 | exon | 3886043 | 3886118 | 3886043 | ID=MS.gene050961.t1.exon2;Parent=MS.gene050961.t1 |
| chr7.1 | CDS | 3886043 | 3886118 | 3886043 | ID=cds.MS.gene050961.t1;Parent=MS.gene050961.t1 |
| chr7.1 | exon | 3886247 | 3886293 | 3886247 | ID=MS.gene050961.t1.exon3;Parent=MS.gene050961.t1 |
| chr7.1 | CDS | 3886247 | 3886293 | 3886247 | ID=cds.MS.gene050961.t1;Parent=MS.gene050961.t1 |
| chr7.1 | exon | 3886596 | 3887083 | 3886596 | ID=MS.gene050961.t1.exon4;Parent=MS.gene050961.t1 |
| chr7.1 | CDS | 3886596 | 3887083 | 3886596 | ID=cds.MS.gene050961.t1;Parent=MS.gene050961.t1 |
| chr7.1 | exon | 3887179 | 3887339 | 3887179 | ID=MS.gene050961.t1.exon5;Parent=MS.gene050961.t1 |
| chr7.1 | CDS | 3887179 | 3887339 | 3887179 | ID=cds.MS.gene050961.t1;Parent=MS.gene050961.t1 |
| chr7.1 | exon | 3887753 | 3887953 | 3887753 | ID=MS.gene050961.t1.exon6;Parent=MS.gene050961.t1 |
| chr7.1 | CDS | 3887753 | 3887953 | 3887753 | ID=cds.MS.gene050961.t1;Parent=MS.gene050961.t1 |
| chr7.1 | exon | 3888071 | 3888206 | 3888071 | ID=MS.gene050961.t1.exon7;Parent=MS.gene050961.t1 |
| chr7.1 | CDS | 3888071 | 3888206 | 3888071 | ID=cds.MS.gene050961.t1;Parent=MS.gene050961.t1 |
| chr7.1 | exon | 3888591 | 3888988 | 3888591 | ID=MS.gene050961.t1.exon8;Parent=MS.gene050961.t1 |
| chr7.1 | CDS | 3888591 | 3888988 | 3888591 | ID=cds.MS.gene050961.t1;Parent=MS.gene050961.t1 |
| Gene Sequence |
| Protein sequence |
