AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene43902

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43902.t1 MTR_5g035060 96.482 199 7 0 1 199 101 299 9.06e-145 405
MS.gene43902.t1 MTR_5g035040 69.849 199 31 3 1 199 207 376 4.41e-91 271
MS.gene43902.t1 MTR_5g035050 89.773 88 9 0 112 199 29 116 3.95e-54 168
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43902.t1 AT1G24040 63.684 190 65 3 1 187 114 302 1.14e-83 251
MS.gene43902.t1 AT1G24040 63.684 190 65 3 1 187 114 302 1.14e-83 251
MS.gene43902.t1 AT1G24040 63.684 190 65 3 1 187 114 302 1.14e-83 251

Find 33 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAGAGGCAGTGGTGTTAA+TGG 0.295778 5.2:+25468937 MS.gene43902:CDS
CAAATATAAGGCTTATCTTT+CGG 0.336668 5.2:-25469054 None:intergenic
ACAGCCATGTTACAAATATA+AGG 0.346669 5.2:-25469066 None:intergenic
GGCTTATCTTTCGGCGGATC+CGG 0.353217 5.2:-25469045 None:intergenic
GTTTCCGAAAGGGTATATTA+AGG 0.368887 5.2:+25468837 MS.gene43902:CDS
AACACCTTAATATACCCTTT+CGG 0.432789 5.2:-25468841 None:intergenic
TCTCCCTTCAGGAGGGGCAT+TGG 0.444220 5.2:+25471794 MS.gene43902:intron
GAAGAGGAAATGCAGTTGGC+TGG 0.454362 5.2:+25468970 MS.gene43902:CDS
TAATTCTACTCTTCCGTCGC+CGG 0.460000 5.2:+25469026 MS.gene43902:CDS
GAGGAGTTTGATGCCGCATA+TGG 0.462290 5.2:+25468897 MS.gene43902:CDS
CAAGCGAGGAACTGATTTCT+CGG 0.465423 5.2:+25471834 MS.gene43902:CDS
TGCGTCTCTGCAACAACAGC+AGG 0.469429 5.2:-25471967 None:intergenic
ATTTCTCGGATGAGTTCATC+AGG 0.474442 5.2:+25471848 MS.gene43902:CDS
CTGTTGATAAATCTCTTAGA+AGG 0.476108 5.2:+25469085 MS.gene43902:CDS
CGCTATTGTGTGCTTGCTTG+CGG 0.480160 5.2:+25468792 MS.gene43902:CDS
CATGGCACGTTTGTTTCTGA+AGG 0.497482 5.2:-25472028 None:intergenic
CCTTCAGGAGGGGCATTGGA+TGG 0.505384 5.2:+25471798 MS.gene43902:intron
CATTGGATGGCATCTTCTAA+AGG 0.517341 5.2:+25471811 MS.gene43902:CDS
TGAAACAGTATTTGATTGAA+CGG 0.524045 5.2:+25468875 MS.gene43902:CDS
AAGAGGAAATGCAGTTGGCT+GGG 0.542657 5.2:+25468971 MS.gene43902:CDS
TCTTTCGGCGGATCCGGCGA+CGG 0.556296 5.2:-25469039 None:intergenic
GGCAGTGGTGTTAATGGTGA+TGG 0.556640 5.2:+25468943 MS.gene43902:CDS
AATCGATGATGTTTCCGAAA+GGG 0.568903 5.2:+25468827 MS.gene43902:CDS
GCAATCAAAGTCGCCATATG+CGG 0.587969 5.2:-25468910 None:intergenic
TACTCATAGTCATTAGAACA+TGG 0.612730 5.2:-25472046 None:intergenic
ATATAAGGCTTATCTTTCGG+CGG 0.617990 5.2:-25469051 None:intergenic
TCTGAAGGCATACTTAAGAG+AGG 0.626310 5.2:-25472013 None:intergenic
TAAGCCTTATATTTGTAACA+TGG 0.633641 5.2:+25469062 MS.gene43902:CDS
TAATGGTGATGGTGAAGAAG+AGG 0.637013 5.2:+25468954 MS.gene43902:CDS
GAATCGATGATGTTTCCGAA+AGG 0.637311 5.2:+25468826 MS.gene43902:CDS
TGAAGAAGAGGAAATGCAGT+TGG 0.653928 5.2:+25468966 MS.gene43902:CDS
GCATCTTCTAAAGGCAAGCG+AGG 0.659909 5.2:+25471820 MS.gene43902:CDS
AACAGTATTTGATTGAACGG+AGG 0.685549 5.2:+25468878 MS.gene43902:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAATAATAAATAGTTTA+CGG + chr5.2:25470961-25470980 MS.gene43902:intron 10.0%
!!! AAATGTAATTAATTTTGTAT+AGG + chr5.2:25470865-25470884 MS.gene43902:intron 10.0%
!!! AATGTAATTAATTTTGTATA+GGG + chr5.2:25470866-25470885 MS.gene43902:intron 10.0%
!! AAAGAGTAATAAATAGTTAA+TGG - chr5.2:25471143-25471162 None:intergenic 15.0%
!! AAATAACATTAATGTTTCAT+TGG - chr5.2:25471109-25471128 None:intergenic 15.0%
!! AAATGTAATCAATTATGTAT+TGG - chr5.2:25471241-25471260 None:intergenic 15.0%
!! ATGTTATAATAGTTATAACA+AGG - chr5.2:25471478-25471497 None:intergenic 15.0%
!! TAAAAATTAGTTAATGTGTT+TGG - chr5.2:25469735-25469754 None:intergenic 15.0%
!! TAAATAGTTAATGGTATAAA+AGG - chr5.2:25471134-25471153 None:intergenic 15.0%
!! TATCAAATTTGCAAAAAATT+TGG + chr5.2:25469904-25469923 MS.gene43902:intron 15.0%
!! TTTCCATTATTTAAAGATTA+AGG + chr5.2:25470160-25470179 MS.gene43902:intron 15.0%
!!! AAAAATTTGGACTATTTTAA+CGG + chr5.2:25469917-25469936 MS.gene43902:intron 15.0%
!! ACAAAATTATCCTTCATTAA+CGG + chr5.2:25470908-25470927 MS.gene43902:intron 20.0%
!! ACCAAAATGACTAATAATTT+GGG - chr5.2:25470827-25470846 None:intergenic 20.0%
!! ACCAATATAATACATATTCT+GGG + chr5.2:25470092-25470111 MS.gene43902:intron 20.0%
!! AGCTATATTTAATATCAAAG+AGG - chr5.2:25470389-25470408 None:intergenic 20.0%
!! ATATAGCTTATACATAAACA+TGG + chr5.2:25470401-25470420 MS.gene43902:intron 20.0%
!! ATGCTAAAAGTTACTATTAT+AGG - chr5.2:25471613-25471632 None:intergenic 20.0%
!! ATTTCTTAATCTGTGTAAAA+TGG + chr5.2:25471257-25471276 MS.gene43902:intron 20.0%
!! CAACCTTAATCTTTAAATAA+TGG - chr5.2:25470166-25470185 None:intergenic 20.0%
!! GAAATGCATAAATTTAACAA+TGG - chr5.2:25469679-25469698 None:intergenic 20.0%
!! TGTAAAACGACATATAATTT+GGG - chr5.2:25471083-25471102 None:intergenic 20.0%
!! TTGTAAAACGACATATAATT+TGG - chr5.2:25471084-25471103 None:intergenic 20.0%
!!! AAATCAACTATACATTCTTT+TGG - chr5.2:25469194-25469213 None:intergenic 20.0%
!!! AACATAAATTTCTAGTAATG+TGG - chr5.2:25469416-25469435 None:intergenic 20.0%
!!! ACATATTGATTTTTTTTGGT+AGG - chr5.2:25471430-25471449 None:intergenic 20.0%
!!! AGTTGACATATTGATTTTTT+TGG - chr5.2:25471406-25471425 None:intergenic 20.0%
!!! GAGATTTCTTTTAATGTTTA+TGG + chr5.2:25469000-25469019 MS.gene43902:CDS 20.0%
!!! GTTGACATATTGATTTTTTT+GGG - chr5.2:25471405-25471424 None:intergenic 20.0%
!!! GTTGACATATTGATTTTTTT+TGG - chr5.2:25471405-25471424 None:intergenic 20.0%
! ACAAAATTATCCTTCGTTAA+TGG - chr5.2:25471194-25471213 None:intergenic 25.0%
! AGCTTAATTATTTATACTGC+AGG - chr5.2:25470745-25470764 None:intergenic 25.0%
! CAAATATAAGGCTTATCTTT+CGG - chr5.2:25469057-25469076 None:intergenic 25.0%
! GACCAAAATGACTAATAATT+TGG - chr5.2:25470828-25470847 None:intergenic 25.0%
! GACCAATATAATACATATTC+TGG + chr5.2:25470091-25470110 MS.gene43902:intron 25.0%
! GAGCTTATGTAAATAGTTTA+TGG + chr5.2:25470267-25470286 MS.gene43902:intron 25.0%
! GTCAAAACGACTTATAATTT+GGG + chr5.2:25471279-25471298 MS.gene43902:intron 25.0%
! TAAATAGTTTACGGTATAGT+AGG + chr5.2:25470970-25470989 MS.gene43902:intron 25.0%
! TAATGAGTTAGATCGAAATA+GGG + chr5.2:25469582-25469601 MS.gene43902:intron 25.0%
! TCCCAGAATATGTATTATAT+TGG - chr5.2:25470096-25470115 None:intergenic 25.0%
! TGAAACAGTATTTGATTGAA+CGG + chr5.2:25468875-25468894 MS.gene43902:CDS 25.0%
! TGACATAGTAAATGAATATG+TGG - chr5.2:25469813-25469832 None:intergenic 25.0%
! TTAATGAGTTAGATCGAAAT+AGG + chr5.2:25469581-25469600 MS.gene43902:intron 25.0%
! TTATCAGAGAAATAAGTTCA+GGG - chr5.2:25470037-25470056 None:intergenic 25.0%
! TTTATCAGAGAAATAAGTTC+AGG - chr5.2:25470038-25470057 None:intergenic 25.0%
!! AGCTTAAAACAAGTTGAAAT+TGG - chr5.2:25470305-25470324 None:intergenic 25.0%
!! GAGAGTACATTATTACAATT+TGG - chr5.2:25470791-25470810 None:intergenic 25.0%
!! GCTTTTGTATACATGTTAAA+TGG - chr5.2:25471911-25471930 None:intergenic 25.0%
!! TAAGCCTTATATTTGTAACA+TGG + chr5.2:25469062-25469081 MS.gene43902:CDS 25.0%
!! TACAATTTGGAATTCATTGA+TGG - chr5.2:25470778-25470797 None:intergenic 25.0%
!! TCCCAAATTATTAGTCATTT+TGG + chr5.2:25470823-25470842 MS.gene43902:intron 25.0%
!! TTGCATTTGTTGGATTAATT+TGG + chr5.2:25469140-25469159 MS.gene43902:intron 25.0%
!!! AGGTTAAGTAGGATATTTTT+TGG + chr5.2:25470559-25470578 MS.gene43902:intron 25.0%
!!! AGTTGATTTGAAGAATCAAT+AGG + chr5.2:25469205-25469224 MS.gene43902:intron 25.0%
!!! GAAAGTATTTAACACTAACA+AGG - chr5.2:25470602-25470621 None:intergenic 25.0%
!!! GGTTAAGTAGGATATTTTTT+GGG + chr5.2:25470560-25470579 MS.gene43902:intron 25.0%
!!! GTTGATTTGAAGAATCAATA+GGG + chr5.2:25469206-25469225 MS.gene43902:intron 25.0%
!!! TAATTTTTTACTCTTCTGCT+AGG + chr5.2:25470539-25470558 MS.gene43902:intron 25.0%
!!! TTTTTTTTTACCTTTTCCTG+TGG + chr5.2:25471551-25471570 MS.gene43902:intron 25.0%
AAACGACTTATAATTTGGGA+CGG + chr5.2:25471283-25471302 MS.gene43902:intron 30.0%
AACACCTTAATATACCCTTT+CGG - chr5.2:25468844-25468863 None:intergenic 30.0%
AAGCTAGAACTATTAGAAGT+GGG + chr5.2:25470485-25470504 MS.gene43902:intron 30.0%
AAGGAAAGTAAGTCAAATAG+AGG + chr5.2:25469504-25469523 MS.gene43902:intron 30.0%
AAGTAAGTCAAATAGAGGAT+AGG + chr5.2:25469509-25469528 MS.gene43902:intron 30.0%
ACAACATTACACATGCTTTA+AGG + chr5.2:25469111-25469130 MS.gene43902:intron 30.0%
ACAGCCATGTTACAAATATA+AGG - chr5.2:25469069-25469088 None:intergenic 30.0%
AGATACTTGAGCTTATCTAT+TGG + chr5.2:25470214-25470233 MS.gene43902:intron 30.0%
ATAGTTTATGGCATGTCTAT+AGG + chr5.2:25470279-25470298 MS.gene43902:intron 30.0%
ATGCATTTCATGTCAACATT+AGG + chr5.2:25469690-25469709 MS.gene43902:intron 30.0%
ATTGGGAGGACTAATTAAAA+TGG + chr5.2:25469249-25469268 MS.gene43902:intron 30.0%
CATTCAAACTAGAGTGAATA+GGG - chr5.2:25469969-25469988 None:intergenic 30.0%
CATTTAACATGCAATGTCAT+AGG - chr5.2:25469369-25469388 None:intergenic 30.0%
CTCAAAGCGACTTATAATTT+GGG + chr5.2:25471335-25471354 MS.gene43902:intron 30.0%
GGTCAAAACGACTTATAATT+TGG + chr5.2:25471278-25471297 MS.gene43902:intron 30.0%
GTTAGAATCCAATTACATTC+AGG - chr5.2:25471762-25471781 None:intergenic 30.0%
TAACTGTAGAAGTTATGAGA+GGG + chr5.2:25469842-25469861 MS.gene43902:intron 30.0%
TAAGCTAGAACTATTAGAAG+TGG + chr5.2:25470484-25470503 MS.gene43902:intron 30.0%
TACTCATAGTCATTAGAACA+TGG - chr5.2:25472049-25472068 None:intergenic 30.0%
TCATTCAAACTAGAGTGAAT+AGG - chr5.2:25469970-25469989 None:intergenic 30.0%
TCTCAAAGCGACTTATAATT+TGG + chr5.2:25471334-25471353 MS.gene43902:intron 30.0%
TGAAGAATCAATAGGGAAAT+TGG + chr5.2:25469213-25469232 MS.gene43902:intron 30.0%
TGCATTTCATGTCAACATTA+GGG + chr5.2:25469691-25469710 MS.gene43902:intron 30.0%
TTAATATCAAAGAGGAAACG+TGG - chr5.2:25470381-25470400 None:intergenic 30.0%
! ACTTTGATTGCGTTTTATAG+AGG + chr5.2:25468922-25468941 MS.gene43902:CDS 30.0%
! CTGTTGATAAATCTCTTAGA+AGG + chr5.2:25469085-25469104 MS.gene43902:CDS 30.0%
! CTTTTCAATACCATTAACGA+AGG + chr5.2:25471181-25471200 MS.gene43902:intron 30.0%
! GACATGTGAATTTTGTAGTA+AGG + chr5.2:25469485-25469504 MS.gene43902:intron 30.0%
! GTTTTACACCTGAATGTAAT+TGG + chr5.2:25471751-25471770 MS.gene43902:intron 30.0%
! TAAAAGTTCAAGTTCAAGCA+AGG - chr5.2:25470635-25470654 None:intergenic 30.0%
!! ATTGGTGTTTGACTTGATAT+TGG + chr5.2:25469231-25469250 MS.gene43902:intron 30.0%
!! CTTTTTCATACCGTTAATGA+AGG - chr5.2:25470921-25470940 None:intergenic 30.0%
!! TTGGTGTTTGACTTGATATT+GGG + chr5.2:25469232-25469251 MS.gene43902:intron 30.0%
AACAGTATTTGATTGAACGG+AGG + chr5.2:25468878-25468897 MS.gene43902:CDS 35.0%
AAGCGACTTATAATTTGGGA+CGG - chr5.2:25471358-25471339 None:intergenic 35.0%
AAGCGACTTATAATTTGGGA+TGG + chr5.2:25471339-25471358 MS.gene43902:intron 35.0%
AATCGATGATGTTTCCGAAA+GGG + chr5.2:25468827-25468846 MS.gene43902:CDS 35.0%
ACTATTAGAAGTGGGTGAAA+AGG + chr5.2:25470493-25470512 MS.gene43902:intron 35.0%
AGCATCCAAGATTAAGATTG+AGG + chr5.2:25471628-25471647 MS.gene43902:intron 35.0%
ATATAAGGCTTATCTTTCGG+CGG - chr5.2:25469054-25469073 None:intergenic 35.0%
ATGCAAGCCATTAGAATTTC+AGG - chr5.2:25471675-25471694 None:intergenic 35.0%
ATTAGGGCTATTATCACTTC+AGG + chr5.2:25469707-25469726 MS.gene43902:intron 35.0%
ATTGGTCAAATTTGTCCTCA+TGG - chr5.2:25470078-25470097 None:intergenic 35.0%
CATGTTCAATTTAATCCCCA+TGG + chr5.2:25469767-25469786 MS.gene43902:intron 35.0%
CTAACTGTAGAAGTTATGAG+AGG + chr5.2:25469841-25469860 MS.gene43902:intron 35.0%
CTATTAGAAGTGGGTGAAAA+GGG + chr5.2:25470494-25470513 MS.gene43902:intron 35.0%
GCACGTTAAATTCATGCATT+TGG + chr5.2:25469436-25469455 MS.gene43902:intron 35.0%
GGTTACCTCAATCTTAATCT+TGG - chr5.2:25471636-25471655 None:intergenic 35.0%
TCAGGAGGAGAATATATCTT+TGG - chr5.2:25471657-25471676 None:intergenic 35.0%
TCCCAAATTATAAGTCGCTT+CGG + chr5.2:25471044-25471063 MS.gene43902:intron 35.0%
TCGTAACGAGTTAGTCAAAA+TGG - chr5.2:25469869-25469888 None:intergenic 35.0%
TGAACATGTGATCTTACATG+TGG + chr5.2:25469387-25469406 MS.gene43902:intron 35.0%
TGTGGCTAAATGCATATTCA+GGG + chr5.2:25470124-25470143 MS.gene43902:intron 35.0%
TTACACATCTATATACGCTC+CGG - chr5.2:25470467-25470486 None:intergenic 35.0%
TTCTCCTCCTGAAATTCTAA+TGG + chr5.2:25471665-25471684 MS.gene43902:intron 35.0%
! GACTTATAATTTGGGATGGA+GGG + chr5.2:25471343-25471362 MS.gene43902:intron 35.0%
! GTTTCCGAAAGGGTATATTA+AGG + chr5.2:25468837-25468856 MS.gene43902:CDS 35.0%
!! AAGGCTTGATTTGCATTTGT+TGG + chr5.2:25469130-25469149 MS.gene43902:intron 35.0%
!! TATTCTGGGACTAATTTGTG+TGG + chr5.2:25470106-25470125 MS.gene43902:intron 35.0%
!!! CAACTTGTTTTAAGCTCTCA+AGG + chr5.2:25470309-25470328 MS.gene43902:intron 35.0%
!!! TTGTTTTAAGCTCTCAAGGA+TGG + chr5.2:25470313-25470332 MS.gene43902:intron 35.0%
ACTCAAAGAAAGTAGACCAC+AGG - chr5.2:25471570-25471589 None:intergenic 40.0%
ACTCTTCTGCTAGGTTAAGT+AGG + chr5.2:25470548-25470567 MS.gene43902:intron 40.0%
AGAAAGTAGACCACAGGAAA+AGG - chr5.2:25471564-25471583 None:intergenic 40.0%
ATTTCTCGGATGAGTTCATC+AGG + chr5.2:25471848-25471867 MS.gene43902:CDS 40.0%
CAAGCCATTAGAATTTCAGG+AGG - chr5.2:25471672-25471691 None:intergenic 40.0%
CAATTTAATCCCCATGGTGT+AGG + chr5.2:25469773-25469792 MS.gene43902:intron 40.0%
CATTGGATGGCATCTTCTAA+AGG + chr5.2:25471811-25471830 MS.gene43902:CDS 40.0%
CCCAAATTATAAGTCGCTTC+GGG + chr5.2:25471045-25471064 MS.gene43902:intron 40.0%
CCCGAAGCGACTTATAATTT+GGG - chr5.2:25471048-25471067 None:intergenic 40.0%
CTTTGAGTCAATGCATGCTA+TGG + chr5.2:25471582-25471601 MS.gene43902:intron 40.0%
GAATCGATGATGTTTCCGAA+AGG + chr5.2:25468826-25468845 MS.gene43902:CDS 40.0%
GTGGCTAAATGCATATTCAG+GGG + chr5.2:25470125-25470144 MS.gene43902:intron 40.0%
GTGTGGCTAAATGCATATTC+AGG + chr5.2:25470123-25470142 MS.gene43902:intron 40.0%
GTTGTTTATTCAAACCCTCC+CGG + chr5.2:25470445-25470464 MS.gene43902:intron 40.0%
TACACATCTATATACGCTCC+GGG - chr5.2:25470466-25470485 None:intergenic 40.0%
TCACAAACCAATTCACGTGT+AGG - chr5.2:25470191-25470210 None:intergenic 40.0%
TCCCGAAGCGACTTATAATT+TGG - chr5.2:25471049-25471068 None:intergenic 40.0%
TGAAGAAGAGGAAATGCAGT+TGG + chr5.2:25468966-25468985 MS.gene43902:CDS 40.0%
! ACTTTTAGCACAGACAGAGT+AGG + chr5.2:25470648-25470667 MS.gene43902:intron 40.0%
! ATTGCGTTTTATAGAGGCAG+TGG + chr5.2:25468928-25468947 MS.gene43902:CDS 40.0%
! CGACTTATAATTTGGGATGG+AGG + chr5.2:25471342-25471361 MS.gene43902:intron 40.0%
! CTTTTAGCACAGACAGAGTA+GGG + chr5.2:25470649-25470668 MS.gene43902:intron 40.0%
! GACTTATAATTTGGGACGGA+GGG + chr5.2:25471287-25471306 MS.gene43902:intron 40.0%
! GACTTATAATTTGGGACGGA+GGG - chr5.2:25471306-25471287 None:intergenic 40.0%
! TATAGAGGCAGTGGTGTTAA+TGG + chr5.2:25468937-25468956 MS.gene43902:CDS 40.0%
! TCTGAAGGCATACTTAAGAG+AGG - chr5.2:25472016-25472035 None:intergenic 40.0%
!! GTGTTTGACTTGATATTGGG+AGG + chr5.2:25469235-25469254 MS.gene43902:intron 40.0%
!! TAATGGTGATGGTGAAGAAG+AGG + chr5.2:25468954-25468973 MS.gene43902:CDS 40.0%
!! TAGAAGTGTCAAGAACCATG+AGG + chr5.2:25470060-25470079 MS.gene43902:intron 40.0%
AAGAGGAAATGCAGTTGGCT+GGG + chr5.2:25468971-25468990 MS.gene43902:CDS 45.0%
CACGTAAATCCTACACCATG+GGG - chr5.2:25469785-25469804 None:intergenic 45.0%
CCACGTAAATCCTACACCAT+GGG - chr5.2:25469786-25469805 None:intergenic 45.0%
GCAATCAAAGTCGCCATATG+CGG - chr5.2:25468913-25468932 None:intergenic 45.0%
GTCAAATAGAGGATAGGCAG+AGG + chr5.2:25469515-25469534 MS.gene43902:intron 45.0%
TAATTCTACTCTTCCGTCGC+CGG + chr5.2:25469026-25469045 MS.gene43902:CDS 45.0%
TCCACGTAAATCCTACACCA+TGG - chr5.2:25469787-25469806 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr5.2:25469651-25469670 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr5.2:25469652-25469671 None:intergenic 45.0%
! CAAGCGAGGAACTGATTTCT+CGG + chr5.2:25471834-25471853 MS.gene43902:CDS 45.0%
! CGACTTATAATTTGGGACGG+AGG + chr5.2:25471286-25471305 MS.gene43902:intron 45.0%
! CGACTTATAATTTGGGACGG+AGG - chr5.2:25471305-25471286 None:intergenic 45.0%
! GGACGGAGGGAGTATAATTT+GGG + chr5.2:25471300-25471319 MS.gene43902:intron 45.0%
! TCAAGCCTTATCCCACTAAG+TGG - chr5.2:25469653-25469672 None:intergenic 45.0%
!! CATGGCACGTTTGTTTCTGA+AGG - chr5.2:25472031-25472050 None:intergenic 45.0%
!! TTCTAAGAGTGTCTCCCTTC+AGG + chr5.2:25471783-25471802 MS.gene43902:intron 45.0%
ACATCTATATACGCTCCGGG+AGG - chr5.2:25470463-25470482 None:intergenic 50.0%
CATCTATATACGCTCCGGGA+GGG - chr5.2:25470462-25470481 None:intergenic 50.0%
CCCATGGTGTAGGATTTACG+TGG + chr5.2:25469783-25469802 MS.gene43902:intron 50.0%
CGCTATTGTGTGCTTGCTTG+CGG + chr5.2:25468792-25468811 MS.gene43902:CDS 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr5.2:25469647-25469666 None:intergenic 50.0%
GAAGAGGAAATGCAGTTGGC+TGG + chr5.2:25468970-25468989 MS.gene43902:CDS 50.0%
GAGGAGTTTGATGCCGCATA+TGG + chr5.2:25468897-25468916 MS.gene43902:CDS 50.0%
GCTCTCAACACACTCACAAG+TGG - chr5.2:25470251-25470270 None:intergenic 50.0%
! GCATCTTCTAAAGGCAAGCG+AGG + chr5.2:25471820-25471839 MS.gene43902:CDS 50.0%
! GGCAGTGGTGTTAATGGTGA+TGG + chr5.2:25468943-25468962 MS.gene43902:CDS 50.0%
! GGGACGGAGGGAGTATAATT+TGG + chr5.2:25471299-25471318 MS.gene43902:intron 50.0%
!! AAGAGTGTCTCCCTTCAGGA+GGG + chr5.2:25471787-25471806 MS.gene43902:intron 50.0%
!! TAAGAGTGTCTCCCTTCAGG+AGG + chr5.2:25471786-25471805 MS.gene43902:intron 50.0%
ATGTAGCCGACCCCACTTAG+TGG + chr5.2:25469638-25469657 MS.gene43902:intron 55.0%
CATCCAATGCCCCTCCTGAA+GGG - chr5.2:25471800-25471819 None:intergenic 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr5.2:25469645-25469664 MS.gene43902:intron 55.0%
GGCTTATCTTTCGGCGGATC+CGG - chr5.2:25469048-25469067 None:intergenic 55.0%
GGTTGCGCCTACACGTGAAT+TGG + chr5.2:25470181-25470200 MS.gene43902:intron 55.0%
TGCGTCTCTGCAACAACAGC+AGG - chr5.2:25471970-25471989 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr5.2:25469639-25469658 MS.gene43902:intron 55.0%
! AGAGTGTCTCCCTTCAGGAG+GGG + chr5.2:25471788-25471807 MS.gene43902:intron 55.0%
CCATCCAATGCCCCTCCTGA+AGG - chr5.2:25471801-25471820 None:intergenic 60.0%
! TCTCCCTTCAGGAGGGGCAT+TGG + chr5.2:25471794-25471813 MS.gene43902:intron 60.0%
!! CCTTCAGGAGGGGCATTGGA+TGG + chr5.2:25471798-25471817 MS.gene43902:intron 60.0%
TCTTTCGGCGGATCCGGCGA+CGG - chr5.2:25469042-25469061 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 25468772 25472069 25468772 ID=MS.gene43902
chr5.2 mRNA 25468772 25472069 25468772 ID=MS.gene43902.t1;Parent=MS.gene43902
chr5.2 exon 25468772 25469106 25468772 ID=MS.gene43902.t1.exon1;Parent=MS.gene43902.t1
chr5.2 CDS 25468772 25469106 25468772 ID=cds.MS.gene43902.t1;Parent=MS.gene43902.t1
chr5.2 exon 25471805 25472069 25471805 ID=MS.gene43902.t1.exon2;Parent=MS.gene43902.t1
chr5.2 CDS 25471805 25472069 25471805 ID=cds.MS.gene43902.t1;Parent=MS.gene43902.t1
Gene Sequence

>MS.gene43902

ATGCGTGACAGCGAAGTTGACGCTATTGTGTGCTTGCTTGCGGATTCTTTCGCTGAATCGATGATGTTTCCGAAAGGGTATATTAAGGTGTTGAGATTTCTTGTGAAACAGTATTTGATTGAACGGAGGAGTTTGATGCCGCATATGGCGACTTTGATTGCGTTTTATAGAGGCAGTGGTGTTAATGGTGATGGTGAAGAAGAGGAAATGCAGTTGGCTGGGACTGTTGAGATTTCTTTTAATGTTTATGGTGCTAATTCTACTCTTCCGTCGCCGGATCCGCCGAAAGATAAGCCTTATATTTGTAACATGGCTGTTGATAAATCTCTTAGAAGGTATACAACATTACACATGCTTTAAGGCTTGATTTGCATTTGTTGGATTAATTTGGCTTTTTTGATTAAGTATGAGTAATTTTACCAAAAGAATGTATAGTTGATTTGAAGAATCAATAGGGAAATTGGTGTTTGACTTGATATTGGGAGGACTAATTAAAATGGTCTATGAATTTTACGAATTTATAATTTATAATCACATCGTTAAAATTGTAGCGTGTTAGTCAAAATAGTTATTCGTTAACTTCTACTATTAGAGCCTATGACATTGCATGTTAAATGAACATGTGATCTTACATGTGGACTCCACATTACTAGAAATTTATGTTGCACGTTAAATTCATGCATTTGGTGTCATTTAAAGACATGTAGAGCGAAGACATGTGAATTTTGTAGTAAGGAAAGTAAGTCAAATAGAGGATAGGCAGAGGAAGACTTAGAAGAACTATAAGATAAACTATTGAGAAATATAGATTAATGAGTTAGATCGAAATAGGGTTTATGAAAGAACATTATGACGTAGTTTAATTCATGTAGCCGACCCCACTTAGTGGGATAAGGCTTGATTGCCATTGTTAAATTTATGCATTTCATGTCAACATTAGGGCTATTATCACTTCAGGATCCAAACACATTAACTAATTTTTAACTTATATATTTCATGTTCAATTTAATCCCCATGGTGTAGGATTTACGTGGAAGACCACATATTCATTTACTATGTCATTGACAATCTAACTGTAGAAGTTATGAGAGGGACCATTTTGACTAACTCGTTACGATTTCAGCGATGTATTTATCAAATTTGCAAAAAATTTGGACTATTTTAACGGATGCTCAAAATTTCGATGATCAATTTCCCTATTCACTCTAGTTTGAATGATGAAACATGTGAGTGATAAAAATGATTGAAATGTGTCAAGAGTTCCCTGAACTTATTTCTCTGATAAATTTAGAAGTGTCAAGAACCATGAGGACAAATTTGACCAATATAATACATATTCTGGGACTAATTTGTGTGGCTAAATGCATATTCAGGGGCTAAATGTGTTGTTTCCATTATTTAAAGATTAAGGTTGCGCCTACACGTGAATTGGTTTGTGAATTAGATACTTGAGCTTATCTATTGGAATAATAATAACCACTTGTGAGTGTGTTGAGAGCTTATGTAAATAGTTTATGGCATGTCTATAGGCCAATTTCAACTTGTTTTAAGCTCTCAAGGATGGTTTATATAAACAGCTTATGACTTATATGAAAAAAAAAATTAACCACGTTTCCTCTTTGATATTAAATATAGCTTATACATAAACATGGATTCAATAAGTGCTAAATTAAGTTGTTTATTCAAACCCTCCCGGAGCGTATATAGATGTGTAAGCTAGAACTATTAGAAGTGGGTGAAAAGGGCATTTAGAAACTTGTTTGATATTAATTTTTTACTCTTCTGCTAGGTTAAGTAGGATATTTTTTGGGTGAATTATAAAGACAGCCTTGTTAGTGTTAAATACTTTCTGCAATATTACCTTGCTTGAACTTGAACTTTTAGCACAGACAGAGTAGGGAAATAAATTTGACTTGCTGCAATCTTACAAAAAGATGAACATTGCGTCAATAGCAAAATGAGTAGTGAAACCTGCAGTATAAATAATTAAGCTACATTAGTCACCATCAATGAATTCCAAATTGTAATAATGTACTCTCTCTCTCTCTCTGTCCCAAATTATTAGTCATTTTGGTCATTTCACACAAATTAAGAAATGTAATTAATTTTGTATAGGGAAGAGAAATTTATTATTTTACAAAATTATCCTTCATTAACGGTATGAAAAAGATAAATAAAGAATTGAAAGAAGAAAATAATAAATAGTTTACGGTATAGTAGGAAAAGTAACATTAATGTTTCATTGATATTGTAAAACGACTTACTCCCTCCGTCCCAAATTATAAGTCGCTTCGGGAAAAAGATTTGTCCCAAATTATATGTCGTTTTACAATACCAATGAAACATTAATGTTATTTTTCCTTTTATACCATTAACTATTTATTACTCTTTTTTCTTTCAATTCTTTATCTTTTCAATACCATTAACGAAGGATAATTTTGTAAAGTTATTCATGATTTCTCTTTTCCAATACATAATTGATTACATTTCTTAATCTGTGTAAAATGGTCAAAACGACTTATAATTTGGGACGGAGGGAGTATAATTTGGGTCAATTTGTTTTCTCAAAGCGACTTATAATTTGGGATGGAGGGAGTACTATTTGACTAAATTAATATGTCAACTTTCTACCCAAAAAAATCAATATGTCAACTTCCTACCAAAAAAAATCAATATGTCAACTCAATGAGAGAATGACATAATCCTTGTTATAACTATTATAACATTGTTTTTAGTATGATTCTAAATTCACATAATGTTATGCTCTTGTTTTTTTTTTTTTTTTTTTACCTTTTCCTGTGGTCTACTTTCTTTGAGTCAATGCATGCTATGGAAAAGCCTATAATAGTAACTTTTAGCATCCAAGATTAAGATTGAGGTAACCAAAGATATATTCTCCTCCTGAAATTCTAATGGCTTGCATTTTCAAACGCTTGTTACGTCTTTTGATTAAGCAAACGAGTAAAATGCTGTGTGTCTGTTTTACACCTGAATGTAATTGGATTCTAACATTCTAAGAGTGTCTCCCTTCAGGAGGGGCATTGGATGGCATCTTCTAAAGGCAAGCGAGGAACTGATTTCTCGGATGAGTTCATCAGGAGAAGTTTACTTGCATTGCAGAATGATTGATGAAGCTCCATTTAACATGTATACAAAAGCTGATTACAAAATTGTAACGACAGATAGTATTTTAGTCCTGCTGTTGTTGCAGAGACGCAAACACTTGATGTGCAAGAAACTTCCTCTCTTAAGTATGCCTTCAGAAACAAACGTGCCATGTTCTAATGACTATGAGTAA
Protein sequence

>MS.gene43902.t1

MRDSEVDAIVCLLADSFAESMMFPKGYIKVLRFLVKQYLIERRSLMPHMATLIAFYRGSGVNGDGEEEEMQLAGTVEISFNVYGANSTLPSPDPPKDKPYICNMAVDKSLRRRGIGWHLLKASEELISRMSSSGEVYLHCRMIDEAPFNMYTKADYKIVTTDSILVLLLLQRRKHLMCKKLPLLSMPSETNVPCSNDYE