AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060703


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060703.t1 MTR_1g048970 90.566 212 17 1 1 209 1 212 2.42e-143 398
MS.gene060703.t1 MTR_5g019990 39.375 160 86 3 56 205 26 184 2.53e-30 110
MS.gene060703.t1 MTR_5g019990 38.235 136 71 4 56 180 26 159 4.74e-21 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060703.t1 AT5G51110 68.605 172 53 1 39 209 22 193 7.42e-87 254
MS.gene060703.t1 AT5G51110 64.021 189 66 2 23 209 32 220 2.32e-85 252
MS.gene060703.t1 AT1G29810 38.211 123 75 1 85 206 23 145 2.20e-28 104
MS.gene060703.t1 AT1G29810 38.655 119 72 1 89 206 66 184 4.74e-28 104

Find 52 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAAAGAGCAGAGATATT+TGG 0.213526 1.3:-31225291 None:intergenic
TGCTCTTTCTCTTTCTCAAC+AGG 0.290739 1.3:+31225302 MS.gene060703:CDS
GAGAAAGAGCAGAGATATTT+GGG 0.293549 1.3:-31225290 None:intergenic
GGTTGTTCTATGTGGATATT+GGG 0.302096 1.3:-31227282 None:intergenic
AGGGTTGAGTTTGGTGGTGG+TGG 0.312013 1.3:-31225100 None:intergenic
AGTTCTGCTCTAACTTGATT+TGG 0.315123 1.3:-31227303 None:intergenic
TGGTTGTTCTATGTGGATAT+TGG 0.345309 1.3:-31227283 None:intergenic
GAGCAGAGATATTTGGGATA+AGG 0.364640 1.3:-31225284 None:intergenic
CAATTCGGAGAGAAAGTTAT+AGG 0.381204 1.3:+31225237 MS.gene060703:CDS
AGGGGACTGTAAAGGTGAAA+TGG 0.393268 1.3:-31225334 None:intergenic
GGGGACTGTAAAGGTGAAAT+GGG 0.394511 1.3:-31225333 None:intergenic
ATTGAATGAAGGGTTGAGTT+TGG 0.402466 1.3:-31225109 None:intergenic
ATCAAGTTAGAGCAGAACTA+TGG 0.405443 1.3:+31227307 MS.gene060703:CDS
GGGTTGAGTTTGGTGGTGGT+GGG 0.424054 1.3:-31225099 None:intergenic
AATTGACTTTCCAACTCAGC+TGG 0.437285 1.3:-31225219 None:intergenic
CTTGATTTGGTTGTTCTATG+TGG 0.450240 1.3:-31227290 None:intergenic
ATGTTACCTTTCTTATAAGC+TGG 0.450280 1.3:-31225377 None:intergenic
TTTCAGAACCGTACTCCAAA+CGG 0.461066 1.3:+31225132 MS.gene060703:CDS
TTCAGAACCGTACTCCAAAC+GGG 0.462057 1.3:+31225133 MS.gene060703:CDS
CGAAGTGGAGAGAACCCGTT+TGG 0.465122 1.3:-31225147 None:intergenic
TGAAGGGTTGAGTTTGGTGG+TGG 0.469376 1.3:-31225103 None:intergenic
TGTCCCAAGGAAAAGAGCTT+GGG 0.472741 1.3:+31228000 MS.gene060703:CDS
CTTTCCAACTCAGCTGGGAA+AGG 0.477753 1.3:-31225213 None:intergenic
CGGTTCTGAAAATTGAATGA+AGG 0.495691 1.3:-31225120 None:intergenic
GAGAGAACCCGTTTGGAGTA+CGG 0.497420 1.3:-31225140 None:intergenic
TACTTAAACTTCGATGCTTG+TGG 0.499142 1.3:+31227184 MS.gene060703:CDS
TGCTAACCAGCTTATAAGAA+AGG 0.502324 1.3:+31225371 MS.gene060703:CDS
GCTGAGTTGGAAAGTCAATT+CGG 0.516869 1.3:+31225222 MS.gene060703:CDS
AGACCCTTTCCCAGCTGAGT+TGG 0.518212 1.3:+31225209 MS.gene060703:CDS
TTTCCAACTCAGCTGGGAAA+GGG 0.519124 1.3:-31225212 None:intergenic
TTGTCCCAAGGAAAAGAGCT+TGG 0.523587 1.3:+31227999 MS.gene060703:CDS
GTGGGATTTATCTGTAACAC+GGG 0.524754 1.3:-31225081 None:intergenic
GGTTCTGAAAATTGAATGAA+GGG 0.540341 1.3:-31225119 None:intergenic
GAAGGATAATAATACAAGCT+TGG 0.542503 1.3:-31225058 None:intergenic
TTAGCATCATCTTGAGAAAG+AGG 0.550758 1.3:-31225354 None:intergenic
TGAGAAAGAGGGGACTGTAA+AGG 0.559410 1.3:-31225342 None:intergenic
ATTGACTTTCCAACTCAGCT+GGG 0.560497 1.3:-31225218 None:intergenic
ATTTATCTGTAACACGGGGA+AGG 0.574185 1.3:-31225076 None:intergenic
TGGAGACTTGTGAATGATGA+AGG 0.574412 1.3:+31227159 MS.gene060703:CDS
TAGCATCATCTTGAGAAAGA+GGG 0.578183 1.3:-31225353 None:intergenic
GAATGAAGGGTTGAGTTTGG+TGG 0.578352 1.3:-31225106 None:intergenic
TCTACAGTTGTAGAGACTGC+AGG 0.582828 1.3:+31227252 MS.gene060703:CDS
GAACTATGGACAGCATCCAT+TGG 0.586293 1.3:+31227321 MS.gene060703:CDS
GGGACTGTAAAGGTGAAATG+GGG 0.586888 1.3:-31225332 None:intergenic
GTTGTTCTATGTGGATATTG+GGG 0.611420 1.3:-31227281 None:intergenic
AGCATCATCTTGAGAAAGAG+GGG 0.631020 1.3:-31225352 None:intergenic
CAAACGGGTTCTCTCCACTT+CGG 0.636865 1.3:+31225148 MS.gene060703:CDS
AGACATCAGATCTTGTCCCA+AGG 0.671698 1.3:+31227987 MS.gene060703:CDS
GGTGGGATTTATCTGTAACA+CGG 0.704465 1.3:-31225082 None:intergenic
TCGTTGTTAAAAGACCGAAG+TGG 0.708298 1.3:-31225162 None:intergenic
GGACTGTAAAGGTGAAATGG+GGG 0.727289 1.3:-31225331 None:intergenic
TGGGATTTATCTGTAACACG+GGG 0.769076 1.3:-31225080 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTGTAATAATTTGAAAAA+TGG + chr1.3:31225457-31225476 MS.gene060703:intron 15.0%
!! ATAAAACATCTAAATAGTTT+AGG - chr1.3:31226908-31226927 None:intergenic 15.0%
!!! CATATAAAAAATGTCTTTTA+AGG - chr1.3:31227546-31227565 None:intergenic 15.0%
!!! TCATAATCAAATTAACATTT+TGG - chr1.3:31226209-31226228 None:intergenic 15.0%
!! AAAATCATATAAGCACATAT+AGG + chr1.3:31227840-31227859 MS.gene060703:intron 20.0%
!! ATGAACATGTGTTTATAAAT+GGG - chr1.3:31225713-31225732 None:intergenic 20.0%
!! TTTAAATGATGCATAAAATC+TGG + chr1.3:31226386-31226405 MS.gene060703:intron 20.0%
!! TTTATAACTGTCTAAAAAAG+TGG - chr1.3:31225545-31225564 None:intergenic 20.0%
!!! AAATTGAGAGATTTTAAATG+CGG + chr1.3:31227207-31227226 MS.gene060703:CDS 20.0%
!!! TATTTTCCAAATGAAAATAC+AGG - chr1.3:31226639-31226658 None:intergenic 20.0%
!!! TTCATTTTTTGTAGAGTTTT+TGG + chr1.3:31227001-31227020 MS.gene060703:intron 20.0%
!!! TTTTTTCTTTTCATTTATGC+AGG + chr1.3:31227128-31227147 MS.gene060703:intron 20.0%
! AAAACATTGAAAGATGAACT+AGG + chr1.3:31226488-31226507 MS.gene060703:intron 25.0%
! AAGGAAAAAGGAATGATAAA+GGG - chr1.3:31227809-31227828 None:intergenic 25.0%
! AGAAAAACGTTAAAAGACAT+AGG + chr1.3:31226020-31226039 MS.gene060703:intron 25.0%
! ATATATAAGCTATGATGACT+AGG + chr1.3:31225861-31225880 MS.gene060703:intron 25.0%
! ATTAAGAAGCAAGTGTAAAA+TGG - chr1.3:31227107-31227126 None:intergenic 25.0%
! CATGAACATGTGTTTATAAA+TGG - chr1.3:31225714-31225733 None:intergenic 25.0%
! TGAACATGTGTTTATAAATG+GGG - chr1.3:31225712-31225731 None:intergenic 25.0%
! TGTACATATACTCTATTGAA+TGG - chr1.3:31226294-31226313 None:intergenic 25.0%
! TTGGTAAAAGTTAAGATGAA+AGG - chr1.3:31226128-31226147 None:intergenic 25.0%
!! ACCACCAAACTAATATTTTT+GGG - chr1.3:31225888-31225907 None:intergenic 25.0%
!! ATCTTAACTTTTACCAAACA+AGG + chr1.3:31226131-31226150 MS.gene060703:intron 25.0%
!! CTTTTATAGACAAATGTTTG+TGG - chr1.3:31226002-31226021 None:intergenic 25.0%
!! TACCACCAAACTAATATTTT+TGG - chr1.3:31225889-31225908 None:intergenic 25.0%
!! TCTTTTAACAACGATTTCTT+GGG + chr1.3:31225171-31225190 MS.gene060703:CDS 25.0%
!! TTTTCATTTATGCAGGTTTT+GGG + chr1.3:31227135-31227154 MS.gene060703:intron 25.0%
!!! CAAGATGAGAACTTATTTTT+AGG - chr1.3:31227874-31227893 None:intergenic 25.0%
!!! TCAAATTAACATTTTGGTCA+AGG - chr1.3:31226203-31226222 None:intergenic 25.0%
!!! TTTGTGGTTAATTTGTTACA+AGG - chr1.3:31225986-31226005 None:intergenic 25.0%
AAAACTGAGCTAAGAATGAT+AGG - chr1.3:31227383-31227402 None:intergenic 30.0%
AACATGATATACAAGTGTTC+AGG + chr1.3:31226658-31226677 MS.gene060703:intron 30.0%
AACTATATTACCTTCCAACA+TGG - chr1.3:31225786-31225805 None:intergenic 30.0%
ACTCACAGATTACTTACAAA+GGG - chr1.3:31226069-31226088 None:intergenic 30.0%
AGGTCCCAAAAATATTAGTT+TGG + chr1.3:31225881-31225900 MS.gene060703:intron 30.0%
AGTGTTAAAGAATCTCACAT+CGG - chr1.3:31225748-31225767 None:intergenic 30.0%
ATATGAACTATGAACCACTA+AGG + chr1.3:31226340-31226359 MS.gene060703:intron 30.0%
ATGTTACCTTTCTTATAAGC+TGG - chr1.3:31225380-31225399 None:intergenic 30.0%
ATTGCAAAGATATTGCTTTC+AGG + chr1.3:31226596-31226615 MS.gene060703:intron 30.0%
CGTGTTAGTGTTAGAATATT+TGG + chr1.3:31225501-31225520 MS.gene060703:intron 30.0%
GAACATGTGTTTATAAATGG+GGG - chr1.3:31225711-31225730 None:intergenic 30.0%
GAAGGAAAAAGGAATGATAA+AGG - chr1.3:31227810-31227829 None:intergenic 30.0%
GAAGGATAATAATACAAGCT+TGG - chr1.3:31225061-31225080 None:intergenic 30.0%
TACTCACAGATTACTTACAA+AGG - chr1.3:31226070-31226089 None:intergenic 30.0%
TATGAACTATGAACCACTAA+GGG + chr1.3:31226341-31226360 MS.gene060703:intron 30.0%
TCTCTAAGCAACTATTTACA+CGG + chr1.3:31225406-31225425 MS.gene060703:intron 30.0%
TTGTATTACCAACATTACGT+TGG + chr1.3:31227582-31227601 MS.gene060703:intron 30.0%
TTTCAGTATTACATTAACCG+TGG + chr1.3:31227438-31227457 MS.gene060703:intron 30.0%
! AAGCTTACATTTTCCTTGTT+TGG - chr1.3:31226147-31226166 None:intergenic 30.0%
! AGAGACATTTTGTAACTCAA+AGG + chr1.3:31227777-31227796 MS.gene060703:intron 30.0%
! ATGATTTTCGTTAGTGAAGA+AGG - chr1.3:31227828-31227847 None:intergenic 30.0%
! CTTTTAACAACGATTTCTTG+GGG + chr1.3:31225172-31225191 MS.gene060703:CDS 30.0%
! CTTTTCATTTATGCAGGTTT+TGG + chr1.3:31227134-31227153 MS.gene060703:intron 30.0%
! GAAAGGCTTCAATATTTTTC+AGG + chr1.3:31227914-31227933 MS.gene060703:intron 30.0%
! GAGACATTTTGTAACTCAAA+GGG + chr1.3:31227778-31227797 MS.gene060703:intron 30.0%
! GCACATTTGATTATCAGTTT+TGG + chr1.3:31226538-31226557 MS.gene060703:intron 30.0%
! GTCTTTTAACAACGATTTCT+TGG + chr1.3:31225170-31225189 MS.gene060703:CDS 30.0%
! GTTGAACCTGTATTTTCATT+TGG + chr1.3:31226630-31226649 MS.gene060703:intron 30.0%
! TAGGTAAGTGTGTCAATTTT+TGG + chr1.3:31226507-31226526 MS.gene060703:intron 30.0%
! TATTTCTGTAACGACGTTAT+TGG - chr1.3:31227757-31227776 None:intergenic 30.0%
! TCCCAAAAATATTAGTTTGG+TGG + chr1.3:31225884-31225903 MS.gene060703:intron 30.0%
! TTGAAAGCATGACATTTGAA+AGG + chr1.3:31227897-31227916 MS.gene060703:intron 30.0%
! TTTTAACAACGATTTCTTGG+GGG + chr1.3:31225173-31225192 MS.gene060703:CDS 30.0%
!! GGTTCTGAAAATTGAATGAA+GGG - chr1.3:31225122-31225141 None:intergenic 30.0%
!!! GGTAATACAAGCGTTTTTTT+AGG - chr1.3:31227572-31227591 None:intergenic 30.0%
!!! TTACTCTGTTTTAGAAATCG+TGG + chr1.3:31225638-31225657 MS.gene060703:intron 30.0%
AACTTGAACCAACGTAATGT+TGG - chr1.3:31227593-31227612 None:intergenic 35.0%
ACATAGGATTAATTCTCGCT+GGG + chr1.3:31226036-31226055 MS.gene060703:intron 35.0%
AGAGAAAGAGCAGAGATATT+TGG - chr1.3:31225294-31225313 None:intergenic 35.0%
AGAGCAGAGTAGCATAAAAA+TGG - chr1.3:31226448-31226467 None:intergenic 35.0%
AGGATCATTAACTCAAGTTC+AGG - chr1.3:31226183-31226202 None:intergenic 35.0%
AGTTCTGCTCTAACTTGATT+TGG - chr1.3:31227306-31227325 None:intergenic 35.0%
ATCAAGTTAGAGCAGAACTA+TGG + chr1.3:31227307-31227326 MS.gene060703:CDS 35.0%
ATGGCATAGCATATACATCA+TGG - chr1.3:31226275-31226294 None:intergenic 35.0%
ATTACATTCTCCATGTTGGA+AGG + chr1.3:31225773-31225792 MS.gene060703:intron 35.0%
ATTGAATGAAGGGTTGAGTT+TGG - chr1.3:31225112-31225131 None:intergenic 35.0%
CAACATGGAGAATGTAATCT+CGG - chr1.3:31225771-31225790 None:intergenic 35.0%
CAATTCGGAGAGAAAGTTAT+AGG + chr1.3:31225237-31225256 MS.gene060703:CDS 35.0%
CAGGGTGAAAATGTGTTATA+TGG - chr1.3:31227068-31227087 None:intergenic 35.0%
CTACCACAACCCAATAAAAT+GGG + chr1.3:31225667-31225686 MS.gene060703:intron 35.0%
CTCACAGATTACTTACAAAG+GGG - chr1.3:31226068-31226087 None:intergenic 35.0%
GAGAAAGAGCAGAGATATTT+GGG - chr1.3:31225293-31225312 None:intergenic 35.0%
GATAAATTCAAAGCCCTTAG+TGG - chr1.3:31226357-31226376 None:intergenic 35.0%
GATAATCAAATGTGCATCTG+AGG - chr1.3:31226533-31226552 None:intergenic 35.0%
GGACTTCTATGAAATTTGCA+GGG - chr1.3:31227086-31227105 None:intergenic 35.0%
GGTTGTTCTATGTGGATATT+GGG - chr1.3:31227285-31227304 None:intergenic 35.0%
GTTGTTCTATGTGGATATTG+GGG - chr1.3:31227284-31227303 None:intergenic 35.0%
TACTTAAACTTCGATGCTTG+TGG + chr1.3:31227184-31227203 MS.gene060703:CDS 35.0%
TAGCATCATCTTGAGAAAGA+GGG - chr1.3:31225356-31225375 None:intergenic 35.0%
TATTCTAACACTAACACGTG+TGG - chr1.3:31225499-31225518 None:intergenic 35.0%
TCGTTAGTGAAGAAGGAAAA+AGG - chr1.3:31227821-31227840 None:intergenic 35.0%
TGATACAGTCTGTTTGATGA+AGG + chr1.3:31226698-31226717 MS.gene060703:intron 35.0%
TGCTAACCAGCTTATAAGAA+AGG + chr1.3:31225371-31225390 MS.gene060703:CDS 35.0%
TGGACTTCTATGAAATTTGC+AGG - chr1.3:31227087-31227106 None:intergenic 35.0%
TGGTTGTTCTATGTGGATAT+TGG - chr1.3:31227286-31227305 None:intergenic 35.0%
TTAGCATCATCTTGAGAAAG+AGG - chr1.3:31225357-31225376 None:intergenic 35.0%
TTGTTACGAAATGAGAGATG+AGG + chr1.3:31225594-31225613 MS.gene060703:intron 35.0%
! ATTAGTTTGGTGGTATGAGT+TGG + chr1.3:31225894-31225913 MS.gene060703:intron 35.0%
! CAAGTAAGGATTAAAGCACT+TGG + chr1.3:31225835-31225854 MS.gene060703:intron 35.0%
! TGGGATAAGGATTTTGTGTT+CGG - chr1.3:31225274-31225293 None:intergenic 35.0%
!! CGGTTCTGAAAATTGAATGA+AGG - chr1.3:31225123-31225142 None:intergenic 35.0%
!! CTTGATTTGGTTGTTCTATG+TGG - chr1.3:31227293-31227312 None:intergenic 35.0%
!!! AGGCTTCAATATTTTTCAGG+TGG + chr1.3:31227917-31227936 MS.gene060703:intron 35.0%
!!! TCTGTTTTAGAAATCGTGGT+CGG + chr1.3:31225642-31225661 MS.gene060703:intron 35.0%
ACTGAGCTAAGAATGATAGG+AGG - chr1.3:31227380-31227399 None:intergenic 40.0%
ACTGGTGTAATGCTTACCAA+TGG - chr1.3:31227340-31227359 None:intergenic 40.0%
AGCATCATCTTGAGAAAGAG+GGG - chr1.3:31225355-31225374 None:intergenic 40.0%
ATAGGAGGGAGTAGATAAGA+AGG - chr1.3:31227365-31227384 None:intergenic 40.0%
ATCTCACATCGGACAAAAGA+TGG - chr1.3:31225737-31225756 None:intergenic 40.0%
ATTTATCTGTAACACGGGGA+AGG - chr1.3:31225079-31225098 None:intergenic 40.0%
CAATCCACAAGAGAAACTAG+AGG - chr1.3:31227653-31227672 None:intergenic 40.0%
CCTACCACAACCCAATAAAA+TGG + chr1.3:31225666-31225685 MS.gene060703:intron 40.0%
CGAGATTACATTCTCCATGT+TGG + chr1.3:31225769-31225788 MS.gene060703:intron 40.0%
CTGAGCTAAGAATGATAGGA+GGG - chr1.3:31227379-31227398 None:intergenic 40.0%
GACATAGGATTAATTCTCGC+TGG + chr1.3:31226035-31226054 MS.gene060703:intron 40.0%
GACTTAGATCCCTTAAGCAA+AGG + chr1.3:31227619-31227638 MS.gene060703:intron 40.0%
GAGATGAGGATGTTTGAATC+AGG + chr1.3:31225608-31225627 MS.gene060703:intron 40.0%
GGTGGGATTTATCTGTAACA+CGG - chr1.3:31225085-31225104 None:intergenic 40.0%
GTGGGATTTATCTGTAACAC+GGG - chr1.3:31225084-31225103 None:intergenic 40.0%
GTTGTAGCTTAAAACCACCA+AGG + chr1.3:31225803-31225822 MS.gene060703:intron 40.0%
TAGCTTAAAACCACCAAGGT+TGG + chr1.3:31225807-31225826 MS.gene060703:intron 40.0%
TAGGAGGGAGTAGATAAGAA+GGG - chr1.3:31227364-31227383 None:intergenic 40.0%
TCGTTGTTAAAAGACCGAAG+TGG - chr1.3:31225165-31225184 None:intergenic 40.0%
TGCTCTTTCTCTTTCTCAAC+AGG + chr1.3:31225302-31225321 MS.gene060703:CDS 40.0%
TGGAGACTTGTGAATGATGA+AGG + chr1.3:31227159-31227178 MS.gene060703:CDS 40.0%
TGGGATTTATCTGTAACACG+GGG - chr1.3:31225083-31225102 None:intergenic 40.0%
TGGTGAGATGGACATTGAAA+AGG + chr1.3:31227458-31227477 MS.gene060703:intron 40.0%
TTACATTAACCGTGGTGAGA+TGG + chr1.3:31227446-31227465 MS.gene060703:intron 40.0%
TTTCAATGTCCATCTCACCA+CGG - chr1.3:31227458-31227477 None:intergenic 40.0%
TTTCAGAACCGTACTCCAAA+CGG + chr1.3:31225132-31225151 MS.gene060703:CDS 40.0%
! AAAGCCTCTAGTTTCTCTTG+TGG + chr1.3:31227646-31227665 MS.gene060703:intron 40.0%
! AACGATTTCTTGGGGGATTT+TGG + chr1.3:31225180-31225199 MS.gene060703:CDS 40.0%
! AAGACCACAACTAGGTCTTT+TGG + chr1.3:31227693-31227712 MS.gene060703:intron 40.0%
! AATTGACTTTCCAACTCAGC+TGG - chr1.3:31225222-31225241 None:intergenic 40.0%
! ACCTGACAGACCCATTTTAT+TGG - chr1.3:31225680-31225699 None:intergenic 40.0%
! ATTGACTTTCCAACTCAGCT+GGG - chr1.3:31225221-31225240 None:intergenic 40.0%
! CCTGACAGACCCATTTTATT+GGG - chr1.3:31225679-31225698 None:intergenic 40.0%
! GAGCAGAGATATTTGGGATA+AGG - chr1.3:31225287-31225306 None:intergenic 40.0%
! GCTGAGTTGGAAAGTCAATT+CGG + chr1.3:31225222-31225241 MS.gene060703:CDS 40.0%
!! AGACCCATTTTATTGGGTTG+TGG - chr1.3:31225673-31225692 None:intergenic 40.0%
!! CCATTTTATTGGGTTGTGGT+AGG - chr1.3:31225669-31225688 None:intergenic 40.0%
!!! CATTTATGCAGGTTTTGGGT+TGG + chr1.3:31227139-31227158 MS.gene060703:intron 40.0%
!!! CTGTTTTAGAAATCGTGGTC+GGG + chr1.3:31225643-31225662 MS.gene060703:intron 40.0%
AAGGAAGTGACTCCATTCCA+AGG - chr1.3:31226109-31226128 None:intergenic 45.0%
AGACATCAGATCTTGTCCCA+AGG + chr1.3:31227987-31228006 MS.gene060703:CDS 45.0%
AGGGGACTGTAAAGGTGAAA+TGG - chr1.3:31225337-31225356 None:intergenic 45.0%
CCCAATAAAATGGGTCTGTC+AGG + chr1.3:31225676-31225695 MS.gene060703:intron 45.0%
CCTACCTAATAGCACTCCTT+CGG - chr1.3:31225924-31225943 None:intergenic 45.0%
CTTACTTGCTCAACCAACCT+TGG - chr1.3:31225823-31225842 None:intergenic 45.0%
GAACTATGGACAGCATCCAT+TGG + chr1.3:31227321-31227340 MS.gene060703:CDS 45.0%
GAATGAAGGGTTGAGTTTGG+TGG - chr1.3:31225109-31225128 None:intergenic 45.0%
GCTTTGCAGCCTTTGCTTAA+GGG - chr1.3:31227631-31227650 None:intergenic 45.0%
GGACTGTAAAGGTGAAATGG+GGG - chr1.3:31225334-31225353 None:intergenic 45.0%
GGGACTGTAAAGGTGAAATG+GGG - chr1.3:31225335-31225354 None:intergenic 45.0%
GGGGACTGTAAAGGTGAAAT+GGG - chr1.3:31225336-31225355 None:intergenic 45.0%
TAAAATGGGTCTGTCAGGTG+AGG + chr1.3:31225681-31225700 MS.gene060703:intron 45.0%
TCCACCAAAAGACCTAGTTG+TGG - chr1.3:31227700-31227719 None:intergenic 45.0%
TCTACAGTTGTAGAGACTGC+AGG + chr1.3:31227252-31227271 MS.gene060703:CDS 45.0%
TGAAGAGAAAGAAGACGACG+AGG + chr1.3:31226226-31226245 MS.gene060703:intron 45.0%
TGAGAAAGAGGGGACTGTAA+AGG - chr1.3:31225345-31225364 None:intergenic 45.0%
TGTCCCAAGGAAAAGAGCTT+GGG + chr1.3:31228000-31228019 MS.gene060703:CDS 45.0%
TGTGACAGAAGACCACAACT+AGG + chr1.3:31227685-31227704 MS.gene060703:intron 45.0%
TTCAGAACCGTACTCCAAAC+GGG + chr1.3:31225133-31225152 MS.gene060703:CDS 45.0%
TTGTCCCAAGGAAAAGAGCT+TGG + chr1.3:31227999-31228018 MS.gene060703:CDS 45.0%
TTTCCAACTCAGCTGGGAAA+GGG - chr1.3:31225215-31225234 None:intergenic 45.0%
! AAGCCCAAGCTCTTTTCCTT+GGG - chr1.3:31228006-31228025 None:intergenic 45.0%
! ACCACAACTAGGTCTTTTGG+TGG + chr1.3:31227696-31227715 MS.gene060703:intron 45.0%
! CAAGGTTGGTTGAGCAAGTA+AGG + chr1.3:31225821-31225840 MS.gene060703:intron 45.0%
! GGAGTAGATAAGAAGGGTAC+TGG - chr1.3:31227358-31227377 None:intergenic 45.0%
! TAAGCCCAAGCTCTTTTCCT+TGG - chr1.3:31228007-31228026 None:intergenic 45.0%
!! AACACCGAAGGAGTGCTATT+AGG + chr1.3:31225917-31225936 MS.gene060703:intron 45.0%
!! AAGGAGTGCTATTAGGTAGG+TGG + chr1.3:31225924-31225943 MS.gene060703:intron 45.0%
!!! TTATTTTATTTTTACTAATA+AGG - chr1.3:31226848-31226867 None:intergenic 5.0%
ACTCTTCTAAGCCGTGACCT+TGG + chr1.3:31226089-31226108 MS.gene060703:intron 50.0%
ACTTGCTCAACCAACCTTGG+TGG - chr1.3:31225820-31225839 None:intergenic 50.0%
ATTCGTCATCTGCAAGCGAG+TGG + chr1.3:31227721-31227740 MS.gene060703:intron 50.0%
CTTTCCAACTCAGCTGGGAA+AGG - chr1.3:31225216-31225235 None:intergenic 50.0%
GGCTTTGCAGCCTTTGCTTA+AGG - chr1.3:31227632-31227651 None:intergenic 50.0%
GTGACTCCATTCCAAGGTCA+CGG - chr1.3:31226103-31226122 None:intergenic 50.0%
TCTAAGCCGTGACCTTGGAA+TGG + chr1.3:31226094-31226113 MS.gene060703:intron 50.0%
! CAAACGGGTTCTCTCCACTT+CGG + chr1.3:31225148-31225167 MS.gene060703:CDS 50.0%
! GAGAGAACCCGTTTGGAGTA+CGG - chr1.3:31225143-31225162 None:intergenic 50.0%
! GGTATGAGTTGGAACACCGA+AGG + chr1.3:31225905-31225924 MS.gene060703:intron 50.0%
! TGAAGGGTTGAGTTTGGTGG+TGG - chr1.3:31225106-31225125 None:intergenic 50.0%
!! CCGAAGGAGTGCTATTAGGT+AGG + chr1.3:31225921-31225940 MS.gene060703:intron 50.0%
AGACCCTTTCCCAGCTGAGT+TGG + chr1.3:31225209-31225228 MS.gene060703:CDS 55.0%
CGAAGTGGAGAGAACCCGTT+TGG - chr1.3:31225150-31225169 None:intergenic 55.0%
!! AGGGTTGAGTTTGGTGGTGG+TGG - chr1.3:31225103-31225122 None:intergenic 55.0%
!! GGGTTGAGTTTGGTGGTGGT+GGG - chr1.3:31225102-31225121 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 31225048 31228027 31225048 ID=MS.gene060703
chr1.3 mRNA 31225048 31228027 31225048 ID=MS.gene060703.t1;Parent=MS.gene060703
chr1.3 exon 31225048 31225392 31225048 ID=MS.gene060703.t1.exon1;Parent=MS.gene060703.t1
chr1.3 CDS 31225048 31225392 31225048 ID=cds.MS.gene060703.t1;Parent=MS.gene060703.t1
chr1.3 exon 31227150 31227342 31227150 ID=MS.gene060703.t1.exon2;Parent=MS.gene060703.t1
chr1.3 CDS 31227150 31227342 31227150 ID=cds.MS.gene060703.t1;Parent=MS.gene060703.t1
chr1.3 exon 31227936 31228027 31227936 ID=MS.gene060703.t1.exon3;Parent=MS.gene060703.t1
chr1.3 CDS 31227936 31228027 31227936 ID=cds.MS.gene060703.t1;Parent=MS.gene060703.t1
Gene Sequence

>MS.gene060703

ATGGCTACAACCAAGCTTGTATTATTATCCTTCCCCGTGTTACAGATAAATCCCACCACCACCAAACTCAACCCTTCATTCAATTTTCAGAACCGTACTCCAAACGGGTTCTCTCCACTTCGGTCTTTTAACAACGATTTCTTGGGGGATTTTGGAGCAAGAGACCCTTTCCCAGCTGAGTTGGAAAGTCAATTCGGAGAGAAAGTTATAGGTAGTTATAACACCGAACACAAAATCCTTATCCCAAATATCTCTGCTCTTTCTCTTTCTCAACAGGAGTGTACCCCCATTTCACCTTTACAGTCCCCTCTTTCTCAAGATGATGCTAACCAGCTTATAAGAAAGGTAACATACACTCTCTCTAAGCAACTATTTACACGGACAAAGCACACGACATTGATACGTAGACACTTGTAATAATTTGAAAAATGGATGTAATTGAATGTAACCACACGTGTTAGTGTTAGAATATTTGGTAACAAAGTGAGTCAATGCCACTTTTTTAGACAGTTATAAAGTTATAACTTATAATAACAAATTATTGCTTTGTTACGAAATGAGAGATGAGGATGTTTGAATCAGGTTTTGATTTACTCTGTTTTAGAAATCGTGGTCGGGCCTACCACAACCCAATAAAATGGGTCTGTCAGGTGAGGATTGCCCCCATTTATAAACACATGTTCATGCCATCTTTTGTCCGATGTGAGATTCTTTAACACTCCGAGATTACATTCTCCATGTTGGAAGGTAATATAGTTGTAGCTTAAAACCACCAAGGTTGGTTGAGCAAGTAAGGATTAAAGCACTTGGCATATATATAAGCTATGATGACTAGGTCCCAAAAATATTAGTTTGGTGGTATGAGTTGGAACACCGAAGGAGTGCTATTAGGTAGGTGGTTCATGTTTCGATCTTTGTTGTTAACGATTCTCACTCCTTGTAACAAATTAACCACAAACATTTGTCTATAAAAGAAAAACGTTAAAAGACATAGGATTAATTCTCGCTGGGAGCAATCCCCTTTGTAAGTAATCTGTGAGTACTCTTCTAAGCCGTGACCTTGGAATGGAGTCACTTCCTTTCATCTTAACTTTTACCAAACAAGGAAAATGTAAGCTTAAAATATATACTTCCTGAACTTGAGTTAATGATCCTTGACCAAAATGTTAATTTGATTATGAAGAGAAAGAAGACGACGAGGATCAAGTCAAAGAGATTTTAATGCCATGATGTATATGCTATGCCATTCAATAGAGTATATGTACATCATATAGATTGCTTGAGAAAAAGTGATATGAACTATGAACCACTAAGGGCTTTGAATTTATCTGCTGAACATTTAAATGATGCATAAAATCTGGTGAATGTAATGTTTATGATCAAAATTAATGAGTCAACCATTTTTATGCTACTCTGCTCTGAAAATTTTGCGCATATATTAAAACATTGAAAGATGAACTAGGTAAGTGTGTCAATTTTTGGCCTCAGATGCACATTTGATTATCAGTTTTGGTTTTGTTTATTAACTTTAAAAGTAACTTTTTTATAATTGCAAAGATATTGCTTTCAGGCTGTACACAGTGTTGAACCTGTATTTTCATTTGGAAAATAACATGATATACAAGTGTTCAGGAATTTTTTTTTGTTACTTGATACAGTCTGTTTGATGAAGGATACTTGATACATTAACAAGTTTTGACATAAGATTTAGTTTAGACACATCAAATTTGAAGACTTTGAGTTTATCTAATTGTTTTATAATTCAGATTGATCATGTATGCTTGAAATAGTGTCTTTCCTTATTAGTAAAAATAAAATAAAAAATAACAGTGTCTTTTCTATTATTTTTAATTTTAACCTAAACTATTTAGATGTTTTATCTTTCTTAGTTATTGTCATCTATTCATTAGTTGCTAAATGCTAATACATAATAATCACACTTTTCTTATTTAATTCATTTTTTGTAGAGTTTTTGGCTTGATAGTCAAATCAGATACACATTTAAAACAAGCTACAACCATATAACACATTTTCACCCTGCAAATTTCATAGAAGTCCATTTTACACTTGCTTCTTAATTTTTTTTCTTTTCATTTATGCAGGTTTTGGGTTGGAGACTTGTGAATGATGAAGGAGTACTTAAACTTCGATGCTTGTGGAAATTGAGAGATTTTAAATGCGGAGTTGAACTCATTAACAGAATCTCTACAGTTGTAGAGACTGCAGGACATTTCCCCAATATCCACATAGAACAACCAAATCAAGTTAGAGCAGAACTATGGACAGCATCCATTGGTAAGCATTACACCAGTACCCTTCTTATCTACTCCCTCCTATCATTCTTAGCTCAGTTTTTTTAGAGAAATTTTGTTTATTTATACTTTCAAAAATTTCAGTATTACATTAACCGTGGTGAGATGGACATTGAAAAGGTAAAAGTATTTAATTGAAATTTTGTTGATTAACAAAGCGAATTCTTCATTTTTGCAAAACAACCTTAAAAGACATTTTTTATATGCAACCTAAAAAAACGCTTGTATTACCAACATTACGTTGGTTCAAGTTGAACTAGACTTAGATCCCTTAAGCAAAGGCTGCAAAGCCTCTAGTTTCTCTTGTGGATTGAAAAAACGTGTTTGTGACAGAAGACCACAACTAGGTCTTTTGGTGGAGATTCGTCATCTGCAAGCGAGTGGATACTTTGTACCAATAACGTCGTTACAGAAATAAGAGACATTTTGTAACTCAAAGGGAGCGACCCTTTATCATTCCTTTTTCCTTCTTCACTAACGAAAATCATATAAGCACATATAGGCTCTAGTTCCTAAAAATAAGTTCTCATCTTGATTTTGAAAGCATGACATTTGAAAGGCTTCAATATTTTTCAGGTGGATTAAGTATGAATGATTTCATTGTAGCTGCAAAGATAGATGCAATACAGACATCAGATCTTGTCCCAAGGAAAAGAGCTTGGGCTTAA

Protein sequence

>MS.gene060703.t1

MATTKLVLLSFPVLQINPTTTKLNPSFNFQNRTPNGFSPLRSFNNDFLGDFGARDPFPAELESQFGEKVIGSYNTEHKILIPNISALSLSQQECTPISPLQSPLSQDDANQLIRKVLGWRLVNDEGVLKLRCLWKLRDFKCGVELINRISTVVETAGHFPNIHIEQPNQVRAELWTASIGGLSMNDFIVAAKIDAIQTSDLVPRKRAWA