Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44059.t1 | RHN80725.1 | 97.2 | 906 | 25 | 0 | 1 | 906 | 1 | 906 | 0.00E+00 | 1630.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44059.t1 | Q8H1Q5 | 51.3 | 949 | 388 | 14 | 1 | 906 | 9 | 926 | 3.8e-229 | 796.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44059.t1 | A0A396JX23 | 97.2 | 906 | 25 | 0 | 1 | 906 | 1 | 906 | 0.0e+00 | 1630.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050786 | MS.gene44059 | 0.816782 | 4.63E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44059.t1 | MTR_1g082300 | 97.351 | 906 | 24 | 0 | 1 | 906 | 1 | 906 | 0.0 | 1835 |
| MS.gene44059.t1 | MTR_1g082300 | 97.351 | 906 | 24 | 0 | 1 | 906 | 1 | 906 | 0.0 | 1833 |
| MS.gene44059.t1 | MTR_1g082300 | 97.244 | 907 | 24 | 1 | 1 | 906 | 1 | 907 | 0.0 | 1830 |
| MS.gene44059.t1 | MTR_1g089110 | 57.414 | 789 | 274 | 16 | 3 | 764 | 2 | 755 | 0.0 | 849 |
| MS.gene44059.t1 | MTR_1g089110 | 57.673 | 782 | 269 | 16 | 3 | 757 | 2 | 748 | 0.0 | 845 |
| MS.gene44059.t1 | MTR_2g082770 | 38.815 | 827 | 408 | 23 | 12 | 781 | 27 | 812 | 1.97e-158 | 488 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44059.t1 | AT1G54710 | 53.651 | 945 | 360 | 15 | 4 | 906 | 18 | 926 | 0.0 | 886 |
| MS.gene44059.t1 | AT1G03380 | 53.261 | 828 | 320 | 17 | 1 | 789 | 1 | 800 | 0.0 | 783 |
| MS.gene44059.t1 | AT1G54710 | 52.148 | 838 | 326 | 14 | 111 | 906 | 1 | 805 | 0.0 | 763 |
| MS.gene44059.t1 | AT5G54730 | 33.972 | 783 | 400 | 24 | 1 | 753 | 1 | 696 | 2.18e-109 | 355 |
| MS.gene44059.t1 | AT5G54730 | 33.981 | 618 | 305 | 21 | 161 | 753 | 45 | 584 | 1.05e-85 | 288 |
Find 218 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCGGTTGTGGCACAATTT+AGG | 0.179862 | 1.3:-57961606 | MS.gene44059:CDS |
| TCTAGCAAGCATTTGGCTTC+TGG | 0.212143 | 1.3:-57962067 | MS.gene44059:CDS |
| ACCTCAGATTTCTGCCAAAT+TGG | 0.244250 | 1.3:+57960350 | None:intergenic |
| GCTGATCAATCTTAGTGATA+TGG | 0.272322 | 1.3:-57962044 | MS.gene44059:CDS |
| CCGCTGCTTGGTGATGTTGA+TGG | 0.280443 | 1.3:+57962118 | None:intergenic |
| CTTATTTCAACCTCATTAAC+AGG | 0.291043 | 1.3:+57960146 | None:intergenic |
| AGCGGTTGTGGCACAATTTA+GGG | 0.293715 | 1.3:-57961605 | MS.gene44059:CDS |
| TTGCTGGTTTATACTCCTTC+TGG | 0.302626 | 1.3:-57960707 | MS.gene44059:CDS |
| GTTCTTGAAGCAGTTTCATT+TGG | 0.318173 | 1.3:+57960641 | None:intergenic |
| CTAGTTACAGCCTCAATTCA+TGG | 0.319946 | 1.3:-57961532 | MS.gene44059:CDS |
| CTAGCAAGCATTTGGCTTCT+GGG | 0.324176 | 1.3:-57962066 | MS.gene44059:CDS |
| CACTTATCCTGTGCCTCAGT+TGG | 0.327207 | 1.3:-57962284 | MS.gene44059:CDS |
| GCGTATGCATTGTGCGAATC+AGG | 0.330024 | 1.3:+57960752 | None:intergenic |
| TCATGCCATGGAACACTTGC+TGG | 0.331523 | 1.3:-57960723 | MS.gene44059:CDS |
| GGAAACTGCTGAAATGATAT+TGG | 0.334443 | 1.3:-57960480 | MS.gene44059:CDS |
| TGGAAGATGCCTCTAATATC+AGG | 0.335031 | 1.3:-57963014 | MS.gene44059:CDS |
| GCGCAGATATAGGACTAGTA+TGG | 0.338742 | 1.3:+57961581 | None:intergenic |
| GGAATGGTTGGGGTTAATAT+TGG | 0.344344 | 1.3:-57962253 | MS.gene44059:CDS |
| CAGCCTGAATTCGGTGATAC+AGG | 0.346522 | 1.3:+57961965 | None:intergenic |
| CGCTGCTTGGTGATGTTGAT+GGG | 0.347448 | 1.3:+57962119 | None:intergenic |
| TCCCCTGTATCACCGAATTC+AGG | 0.357654 | 1.3:-57961968 | MS.gene44059:CDS |
| TGATTCCATAAAACTTAATC+AGG | 0.358708 | 1.3:-57960420 | MS.gene44059:CDS |
| AATTGTCAGAGGCATTGTTC+TGG | 0.359360 | 1.3:-57959176 | MS.gene44059:intron |
| GACAAGTTCCCTGATATTAG+AGG | 0.368128 | 1.3:+57963005 | None:intergenic |
| TTAGGTGTCTTTCTTTGTGA+TGG | 0.368906 | 1.3:-57960240 | MS.gene44059:intron |
| ACTCCGGGAGGATACCAATT+TGG | 0.373742 | 1.3:-57960364 | MS.gene44059:CDS |
| TGCTTTGGGCTTGCTTTGAC+AGG | 0.379869 | 1.3:-57963110 | MS.gene44059:CDS |
| TGCTAGATTCCATAGCATAT+CGG | 0.384870 | 1.3:+57962083 | None:intergenic |
| TTGGGTGGGCAAGGAATGGT+TGG | 0.394175 | 1.3:-57962265 | MS.gene44059:CDS |
| AGAAGCAGCGACGGAGGCGC+CGG | 0.397817 | 1.3:+57964226 | None:intergenic |
| CTAACTTTCCAGCCTGAATT+CGG | 0.399263 | 1.3:+57961956 | None:intergenic |
| AGAAAGAAAAGCAGGAGGTT+GGG | 0.404547 | 1.3:+57960904 | None:intergenic |
| GACTTGTGTTTAACAACAAT+GGG | 0.406696 | 1.3:+57962179 | None:intergenic |
| TCAAAACATAGCGCAGATAT+AGG | 0.408648 | 1.3:+57961571 | None:intergenic |
| GCTACCAGGTTTCCGCTGCT+TGG | 0.417730 | 1.3:+57962106 | None:intergenic |
| TAGGTGTCTTTCTTTGTGAT+GGG | 0.424566 | 1.3:-57960239 | MS.gene44059:CDS |
| TGGGTGGGCAAGGAATGGTT+GGG | 0.424586 | 1.3:-57962264 | MS.gene44059:CDS |
| ATTGTGAAAATTATAGTGTT+GGG | 0.425168 | 1.3:-57960448 | MS.gene44059:CDS |
| AATTGTGAAAATTATAGTGT+TGG | 0.429375 | 1.3:-57960449 | MS.gene44059:CDS |
| TTCAGTCCACTTGGGGTGAC+AGG | 0.431138 | 1.3:-57960082 | MS.gene44059:intron |
| AGCATCACATCCTTTACTCT+TGG | 0.434935 | 1.3:-57962905 | MS.gene44059:CDS |
| GCAGGAGGAGTCGGACTTTG+AGG | 0.438368 | 1.3:+57962148 | None:intergenic |
| AATGTTTCATCTTCTGCAGC+AGG | 0.443523 | 1.3:-57960830 | MS.gene44059:CDS |
| ATTGTCAGAGGCATTGTTCT+GGG | 0.446262 | 1.3:-57959175 | MS.gene44059:intron |
| TAACCTACTATCGTCATTGA+TGG | 0.448610 | 1.3:-57960669 | MS.gene44059:CDS |
| TATGGAATCTAGCAAGCATT+TGG | 0.451298 | 1.3:-57962074 | MS.gene44059:CDS |
| CGGGTTCTCAAAGTAATGAT+TGG | 0.452697 | 1.3:-57961459 | MS.gene44059:CDS |
| CTGATCAATCTTAGTGATAT+GGG | 0.453531 | 1.3:-57962043 | MS.gene44059:CDS |
| ATTCGGTGATACAGGGGAAC+TGG | 0.455908 | 1.3:+57961973 | None:intergenic |
| CTCTATTTCAATCTCCCCAT+TGG | 0.457148 | 1.3:+57960175 | None:intergenic |
| TTAACTGTACCTGGCTTTGT+GGG | 0.458457 | 1.3:-57959073 | MS.gene44059:CDS |
| AAGCAGGAGGTTGGGGTGGG+TGG | 0.460095 | 1.3:+57960912 | None:intergenic |
| CAATGGGGAGATTGAAATAG+AGG | 0.461586 | 1.3:-57960174 | MS.gene44059:CDS |
| CGACTTGTGTTTAACAACAA+TGG | 0.461697 | 1.3:+57962178 | None:intergenic |
| AGAAAAGCAGGAGGTTGGGG+TGG | 0.461895 | 1.3:+57960908 | None:intergenic |
| CATCCGAAGTTAACTGTACC+TGG | 0.462498 | 1.3:-57959082 | MS.gene44059:CDS |
| CACAAAATTCAGTCCACTTG+GGG | 0.463372 | 1.3:-57960089 | MS.gene44059:CDS |
| ACTTATCCTGTGCCTCAGTT+GGG | 0.463385 | 1.3:-57962283 | MS.gene44059:CDS |
| GTTAACTGTACCTGGCTTTG+TGG | 0.465939 | 1.3:-57959074 | MS.gene44059:CDS |
| ATTGTAGCAGTCCCTCTGGC+AGG | 0.468310 | 1.3:-57957032 | MS.gene44059:CDS |
| AGACCCACAGCGACTATTTG+AGG | 0.470535 | 1.3:+57962700 | None:intergenic |
| GCTAGATTCCATAGCATATC+GGG | 0.471561 | 1.3:+57962084 | None:intergenic |
| GTGCCTCAGTTGGGTGGGCA+AGG | 0.473182 | 1.3:-57962274 | MS.gene44059:CDS |
| TTTACGATCGGTTCCATCGC+CGG | 0.473917 | 1.3:+57964199 | None:intergenic |
| GGTGGCAAAGCTGTTGATGC+TGG | 0.477418 | 1.3:+57960930 | None:intergenic |
| GGGGAGTACACCTGGTGGAC+TGG | 0.477946 | 1.3:-57960501 | MS.gene44059:CDS |
| AGAACTGTCTCACCACCAAA+AGG | 0.478321 | 1.3:+57961040 | None:intergenic |
| TCCTCCGGCGTCCGTACTGC+CGG | 0.479276 | 1.3:-57964245 | MS.gene44059:CDS |
| CCATAGCATATCGGGCTACC+AGG | 0.479379 | 1.3:+57962092 | None:intergenic |
| AGAAGATTTACGAGTGAAAG+TGG | 0.482850 | 1.3:-57960588 | MS.gene44059:CDS |
| CAGACATCCCACCATTGAAC+AGG | 0.484714 | 1.3:+57960563 | None:intergenic |
| GAAAGAAAAGCAGGAGGTTG+GGG | 0.484867 | 1.3:+57960905 | None:intergenic |
| ATCGAGAACTTGAAATCCAT+TGG | 0.485519 | 1.3:+57963038 | None:intergenic |
| TCCTACTCAAAGAAAGGATC+GGG | 0.486675 | 1.3:-57961478 | MS.gene44059:CDS |
| TTTCAGATTCGTACCTTCCT+CGG | 0.487984 | 1.3:+57956951 | None:intergenic |
| TATCCTGTGCCTCAGTTGGG+TGG | 0.488213 | 1.3:-57962280 | MS.gene44059:CDS |
| TCCACAAAATTCAGTCCACT+TGG | 0.488720 | 1.3:-57960091 | MS.gene44059:CDS |
| TCAGTTGGGTGGGCAAGGAA+TGG | 0.489898 | 1.3:-57962269 | MS.gene44059:CDS |
| CTGCCATCAATGACGATAGT+AGG | 0.491239 | 1.3:+57960666 | None:intergenic |
| ATTCCGTTCAACTGTCTACA+TGG | 0.494684 | 1.3:-57962734 | MS.gene44059:CDS |
| AGATGGCCACAACGAAGCTC+AGG | 0.495493 | 1.3:-57962833 | MS.gene44059:CDS |
| CCACAAAATTCAGTCCACTT+GGG | 0.496716 | 1.3:-57960090 | MS.gene44059:CDS |
| GTTTAACAACAATGGGTTGT+TGG | 0.498232 | 1.3:+57962186 | None:intergenic |
| CTCCTACTCGGTTATTCCAA+TGG | 0.498897 | 1.3:-57963054 | MS.gene44059:CDS |
| CGACGGAGGCGCCGGCAGTA+CGG | 0.499615 | 1.3:+57964234 | None:intergenic |
| AGGAACGAATCCATTGCTCT+TGG | 0.500705 | 1.3:+57964307 | None:intergenic |
| TGCATTAAGACGGCTTCCTC+CGG | 0.501805 | 1.3:-57964260 | MS.gene44059:CDS |
| GGGTGGGCAAGGAATGGTTG+GGG | 0.508582 | 1.3:-57962263 | MS.gene44059:CDS |
| ATGCCTTCCTACTCAAAGAA+AGG | 0.510586 | 1.3:-57961484 | MS.gene44059:CDS |
| GTCCGATGGCTGTAGGGCCA+CGG | 0.511127 | 1.3:-57962225 | MS.gene44059:CDS |
| TGGAACCGATCGTAAAGATC+AGG | 0.512333 | 1.3:-57964192 | MS.gene44059:intron |
| CAGGTACAGTTAACTTCGGA+TGG | 0.512564 | 1.3:+57959083 | None:intergenic |
| GAACTGTCTCACCACCAAAA+GGG | 0.513131 | 1.3:+57961041 | None:intergenic |
| TAATGCCGGATGGCTTAATA+CGG | 0.513868 | 1.3:-57960858 | MS.gene44059:CDS |
| TGCTTTGACAGGCTAGAGCT+CGG | 0.514606 | 1.3:-57963099 | MS.gene44059:CDS |
| GTTGGGGTTAATATTGGCTA+TGG | 0.515823 | 1.3:-57962247 | MS.gene44059:CDS |
| GGCTATGGTCCGATGGCTGT+AGG | 0.516684 | 1.3:-57962232 | MS.gene44059:CDS |
| CAGAAAGAAAAGCAGGAGGT+TGG | 0.520924 | 1.3:+57960903 | None:intergenic |
| GAAATGAACTTGAAAGAAGA+AGG | 0.522169 | 1.3:+57964287 | None:intergenic |
| TTAGAGCATGAACATAGGTA+TGG | 0.523088 | 1.3:+57962758 | None:intergenic |
| GGGAAAGTCTCAGTTCCATC+TGG | 0.523092 | 1.3:-57960809 | MS.gene44059:CDS |
| TGCCCACCCAACTGAGGCAC+AGG | 0.523609 | 1.3:+57962277 | None:intergenic |
| CACCGTGGCCCTACAGCCAT+CGG | 0.523773 | 1.3:+57962223 | None:intergenic |
| ATCCTGTGCCTCAGTTGGGT+GGG | 0.527851 | 1.3:-57962279 | MS.gene44059:CDS |
| TGAGGTTGAAATAAGACAGA+AGG | 0.528495 | 1.3:-57960138 | MS.gene44059:CDS |
| ATCACCAAGCAGCGGAAACC+TGG | 0.529348 | 1.3:-57962110 | MS.gene44059:CDS |
| TCCGTCGCTGCTTCTATCTC+CGG | 0.530686 | 1.3:-57964218 | MS.gene44059:CDS |
| TCTATATCGGGGAGTACACC+TGG | 0.530880 | 1.3:-57960509 | MS.gene44059:CDS |
| CTCTGATGGTATAGCTACAA+AGG | 0.532244 | 1.3:-57957244 | MS.gene44059:CDS |
| GCCTCTCCCTGCAAAAGCAG+AGG | 0.532861 | 1.3:-57962944 | MS.gene44059:CDS |
| ACAGGGGAACTGGATCCATC+AGG | 0.534199 | 1.3:+57961983 | None:intergenic |
| AGTTCTTAAGATACACAATC+AGG | 0.535021 | 1.3:-57961023 | MS.gene44059:CDS |
| TTGTGGAAATGATCAAGGAC+GGG | 0.536944 | 1.3:+57960107 | None:intergenic |
| CCTGGTAGCCCGATATGCTA+TGG | 0.538012 | 1.3:-57962092 | MS.gene44059:CDS |
| AAATCTTCTTCTTGTATCTG+TGG | 0.538300 | 1.3:+57960602 | None:intergenic |
| CTGTATCACCGAATTCAGGC+TGG | 0.539993 | 1.3:-57961964 | MS.gene44059:CDS |
| TTCAAACGTGTACTCCTACT+CGG | 0.540235 | 1.3:-57963066 | MS.gene44059:CDS |
| AGAGGATATTCCTGTTAATG+AGG | 0.541213 | 1.3:-57960156 | MS.gene44059:CDS |
| TCAGCAGTTTCCAGTCCACC+AGG | 0.541618 | 1.3:+57960491 | None:intergenic |
| GATGTTGATGGGCTGACAGC+AGG | 0.541983 | 1.3:+57962130 | None:intergenic |
| CTGCCAAATTGGTATCCTCC+CGG | 0.543872 | 1.3:+57960361 | None:intergenic |
| GAAAAGCAGGAGGTTGGGGT+GGG | 0.546994 | 1.3:+57960909 | None:intergenic |
| TAACAACAATGGGTTGTTGG+AGG | 0.547432 | 1.3:+57962189 | None:intergenic |
| AGCCTGAATTCGGTGATACA+GGG | 0.548808 | 1.3:+57961966 | None:intergenic |
| GCTATGGTCCGATGGCTGTA+GGG | 0.549410 | 1.3:-57962231 | MS.gene44059:CDS |
| ATATTTGACTTCTCCGAGGA+AGG | 0.549457 | 1.3:-57956964 | None:intergenic |
| TCTTCTTGTATCTGTGGTGA+AGG | 0.550396 | 1.3:+57960608 | None:intergenic |
| AGAAACAGATGCGGCTGGAG+TGG | 0.550843 | 1.3:-57961912 | MS.gene44059:intron |
| GCAAAAGCAGAGGGCTGTGA+AGG | 0.551367 | 1.3:-57962934 | MS.gene44059:CDS |
| AATATGACAAGTTCCCTTGG+AGG | 0.552210 | 1.3:+57961075 | None:intergenic |
| CTGTTAGATTCTACTCACTA+AGG | 0.552645 | 1.3:-57962783 | MS.gene44059:CDS |
| GTGGATTGTAGCAGTCCCTC+TGG | 0.554454 | 1.3:-57957036 | MS.gene44059:CDS |
| CGCAGATATAGGACTAGTAT+GGG | 0.554454 | 1.3:+57961582 | None:intergenic |
| TATCAAGATCTAATGCCTGA+TGG | 0.555177 | 1.3:-57961998 | MS.gene44059:CDS |
| TTCCTACTCAAAGAAAGGAT+CGG | 0.557533 | 1.3:-57961479 | MS.gene44059:CDS |
| GCTGCTTCTATCTCCGGCGA+TGG | 0.557714 | 1.3:-57964212 | MS.gene44059:CDS |
| GGGCTGACAGCAGGAGGAGT+CGG | 0.558059 | 1.3:+57962139 | None:intergenic |
| GGTGCCTCAAATTTCTCTGA+TGG | 0.559962 | 1.3:-57957258 | MS.gene44059:CDS |
| TATACCATCAGAGAAATTTG+AGG | 0.562160 | 1.3:+57957254 | None:intergenic |
| CCTCTCCCTGCAAAAGCAGA+GGG | 0.565243 | 1.3:-57962943 | MS.gene44059:CDS |
| CATGCAACAACCAAGAGTAA+AGG | 0.565496 | 1.3:+57962895 | None:intergenic |
| CAGAGGTGCATATAAACTCC+GGG | 0.565872 | 1.3:-57960379 | MS.gene44059:CDS |
| TCTACAGAAACAGATGCGGC+TGG | 0.565883 | 1.3:-57961917 | MS.gene44059:CDS |
| TGCTACCTGATCTTTACGAT+CGG | 0.565956 | 1.3:+57964187 | None:intergenic |
| GGAGTGAACCACCATGGTAG+AGG | 0.566226 | 1.3:+57960968 | None:intergenic |
| GGTTGCCGTCATTTCCTCCA+AGG | 0.572748 | 1.3:-57961089 | MS.gene44059:CDS |
| CTAACCACAGAAAGAAAAGC+AGG | 0.573795 | 1.3:+57960896 | None:intergenic |
| CATTTCGTCTTGCATTAAGA+CGG | 0.575776 | 1.3:-57964270 | MS.gene44059:CDS |
| GATCCTTTCTTTGAGTAGGA+AGG | 0.577226 | 1.3:+57961481 | None:intergenic |
| ATCAGATTTCTCCCTGCCAG+AGG | 0.577582 | 1.3:+57957020 | None:intergenic |
| AACTGTCTCACCACCAAAAG+GGG | 0.579524 | 1.3:+57961042 | None:intergenic |
| GCAGAGGTGCATATAAACTC+CGG | 0.580890 | 1.3:-57960380 | MS.gene44059:CDS |
| ACTAACCGTATTAAGCCATC+CGG | 0.582236 | 1.3:+57960853 | None:intergenic |
| TGCCACGGTGGAGCTTGTAA+AGG | 0.583238 | 1.3:+57961419 | None:intergenic |
| CTGTTACCTGTCACCCCAAG+TGG | 0.588510 | 1.3:+57960076 | None:intergenic |
| TAATATTGGCTATGGTCCGA+TGG | 0.588529 | 1.3:-57962239 | MS.gene44059:CDS |
| TCAGATTTCTCCCTGCCAGA+GGG | 0.589490 | 1.3:+57957021 | None:intergenic |
| TACTGAATTAAGTGACCAGA+AGG | 0.590764 | 1.3:+57960692 | None:intergenic |
| AGCAGAAGTTACTACTGATG+TGG | 0.591016 | 1.3:-57957055 | MS.gene44059:CDS |
| TTTCAGCCTGAGCTTCGTTG+TGG | 0.591381 | 1.3:+57962827 | None:intergenic |
| GGAGATAGAAGCAGCGACGG+AGG | 0.591766 | 1.3:+57964220 | None:intergenic |
| TAGAGCATGAACATAGGTAT+GGG | 0.591981 | 1.3:+57962759 | None:intergenic |
| TTTGTGGAAATGATCAAGGA+CGG | 0.594219 | 1.3:+57960106 | None:intergenic |
| CAGTCCTCAAATAGTCGCTG+TGG | 0.595369 | 1.3:-57962704 | MS.gene44059:CDS |
| ATAAACCAGCAAGTGTTCCA+TGG | 0.597706 | 1.3:+57960718 | None:intergenic |
| TGAAAGTGGAACCTGTTCAA+TGG | 0.597917 | 1.3:-57960574 | MS.gene44059:CDS |
| GTTGCCGTCATTTCCTCCAA+GGG | 0.598398 | 1.3:-57961088 | MS.gene44059:CDS |
| TTGTAGCAGTCCCTCTGGCA+GGG | 0.602924 | 1.3:-57957031 | MS.gene44059:CDS |
| ACAGCAGAAACAGCACCAGA+TGG | 0.603039 | 1.3:+57960794 | None:intergenic |
| AGTTCCCTTGGAGGAAATGA+CGG | 0.606767 | 1.3:+57961084 | None:intergenic |
| GATGTTATTACCATGAATTG+AGG | 0.608809 | 1.3:+57961522 | None:intergenic |
| ATGTTTCATCTTCTGCAGCA+GGG | 0.610620 | 1.3:-57960829 | MS.gene44059:CDS |
| ACAGTGCAAAATGTCAGAGA+TGG | 0.618661 | 1.3:-57962850 | MS.gene44059:CDS |
| AACAACGGTTCCAAGAGCAA+TGG | 0.619032 | 1.3:-57964317 | MS.gene44059:CDS |
| GAATCTTAGAGCATGAACAT+AGG | 0.620118 | 1.3:+57962753 | None:intergenic |
| GGTGATAATGATGACATGCT+TGG | 0.621093 | 1.3:-57956991 | MS.gene44059:CDS |
| ACCAATTTGGCAGAAATCTG+AGG | 0.621938 | 1.3:-57960351 | MS.gene44059:intron |
| GGAAGATGCCTCTAATATCA+GGG | 0.623650 | 1.3:-57963013 | MS.gene44059:CDS |
| GCCGGAGATAGAAGCAGCGA+CGG | 0.627399 | 1.3:+57964217 | None:intergenic |
| TCTCACCACCAAAAGGGGAA+AGG | 0.628650 | 1.3:+57961047 | None:intergenic |
| ACCCGATCCTTTCTTTGAGT+AGG | 0.631333 | 1.3:+57961477 | None:intergenic |
| AGGGAGAAATCTGATGAAGA+TGG | 0.631588 | 1.3:-57957012 | MS.gene44059:CDS |
| TAACCATGTAGACAGTTGAA+CGG | 0.635643 | 1.3:+57962731 | None:intergenic |
| AAGTGGAACCTGTTCAATGG+TGG | 0.635842 | 1.3:-57960571 | MS.gene44059:CDS |
| ATGTCTGTAGAAGATATGAT+TGG | 0.636891 | 1.3:-57960547 | MS.gene44059:CDS |
| GCCGGCAGTACGGACGCCGG+AGG | 0.637486 | 1.3:+57964244 | None:intergenic |
| ATACACAATCAGGACACAGA+AGG | 0.639988 | 1.3:-57961013 | MS.gene44059:CDS |
| ATTCCTTGCCCACCCAACTG+AGG | 0.642669 | 1.3:+57962271 | None:intergenic |
| AAGCCAGGTACAGTTAACTT+CGG | 0.644189 | 1.3:+57959079 | None:intergenic |
| AGTCCTCAAATAGTCGCTGT+GGG | 0.644493 | 1.3:-57962703 | MS.gene44059:CDS |
| TGCTGGTTTACAGTAAAATG+TGG | 0.645882 | 1.3:+57960947 | None:intergenic |
| AGGTACAGTTAACTTCGGAT+GGG | 0.646044 | 1.3:+57959084 | None:intergenic |
| TGGATTTCAAGTTCTCGATG+TGG | 0.646580 | 1.3:-57963034 | MS.gene44059:CDS |
| TGTGATAAATCAAAGATACC+TGG | 0.646678 | 1.3:-57962874 | MS.gene44059:CDS |
| GGCGCCGGCAGTACGGACGC+CGG | 0.656417 | 1.3:+57964241 | None:intergenic |
| GCCTGAATTCGGTGATACAG+GGG | 0.657469 | 1.3:+57961967 | None:intergenic |
| TTGTCACGTCTCAAATGCAG+AGG | 0.660933 | 1.3:-57960396 | MS.gene44059:CDS |
| ATCCATTGGAATAACCGAGT+AGG | 0.661164 | 1.3:+57963052 | None:intergenic |
| CGATGGCTGTAGGGCCACGG+TGG | 0.664390 | 1.3:-57962222 | MS.gene44059:CDS |
| ATCGTGTAGATGAAGAAACA+AGG | 0.665373 | 1.3:-57964347 | None:intergenic |
| AGTGGAACCTGTTCAATGGT+GGG | 0.666683 | 1.3:-57960570 | MS.gene44059:CDS |
| AAGGTTAAATCATCAGAACA+TGG | 0.666854 | 1.3:-57957225 | MS.gene44059:CDS |
| TATGCATTGTGCGAATCAGG+AGG | 0.673488 | 1.3:+57960755 | None:intergenic |
| CCATCAACATCACCAAGCAG+CGG | 0.680372 | 1.3:-57962118 | MS.gene44059:CDS |
| ATACGCAAAAGTTCATGCCA+TGG | 0.683570 | 1.3:-57960735 | MS.gene44059:CDS |
| AAATGTGGAGTGAACCACCA+TGG | 0.691383 | 1.3:+57960962 | None:intergenic |
| AAATTCTACAGAAACAGATG+CGG | 0.692764 | 1.3:-57961921 | MS.gene44059:CDS |
| ATACTGCGGATGTCATGCCA+CGG | 0.696634 | 1.3:+57961404 | None:intergenic |
| GAATATGCATGTTACTTGTG+AGG | 0.697394 | 1.3:-57957157 | MS.gene44059:CDS |
| AAACAAGGAAAGAACAACAA+CGG | 0.698484 | 1.3:-57964332 | MS.gene44059:CDS |
| CTGCGGATGTCATGCCACGG+TGG | 0.707398 | 1.3:+57961407 | None:intergenic |
| ACCACAGAAAGAAAAGCAGG+AGG | 0.715286 | 1.3:+57960899 | None:intergenic |
| TGATATATTTGACTTCTCCG+AGG | 0.718503 | 1.3:-57956968 | MS.gene44059:CDS |
| GTTGATGGGCTGACAGCAGG+AGG | 0.724183 | 1.3:+57962133 | None:intergenic |
| CACCTTTACAAGCTCCACCG+TGG | 0.728912 | 1.3:-57961421 | MS.gene44059:CDS |
| AGGTGCATATAAACTCCGGG+AGG | 0.742328 | 1.3:-57960376 | MS.gene44059:CDS |
| ATATCGGGGAGTACACCTGG+TGG | 0.750372 | 1.3:-57960506 | MS.gene44059:CDS |
| GAGGCATAAGCTAACCACCG+TGG | 0.793825 | 1.3:+57962208 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 57956965 | 57964360 | 57956965 | ID=MS.gene44059 |
| chr1.3 | mRNA | 57956965 | 57964360 | 57956965 | ID=MS.gene44059.t1;Parent=MS.gene44059 |
| chr1.3 | exon | 57964193 | 57964360 | 57964193 | ID=MS.gene44059.t1.exon1;Parent=MS.gene44059.t1 |
| chr1.3 | CDS | 57964193 | 57964360 | 57964193 | ID=cds.MS.gene44059.t1;Parent=MS.gene44059.t1 |
| chr1.3 | exon | 57962690 | 57963133 | 57962690 | ID=MS.gene44059.t1.exon2;Parent=MS.gene44059.t1 |
| chr1.3 | CDS | 57962690 | 57963133 | 57962690 | ID=cds.MS.gene44059.t1;Parent=MS.gene44059.t1 |
| chr1.3 | exon | 57961913 | 57962353 | 57961913 | ID=MS.gene44059.t1.exon3;Parent=MS.gene44059.t1 |
| chr1.3 | CDS | 57961913 | 57962353 | 57961913 | ID=cds.MS.gene44059.t1;Parent=MS.gene44059.t1 |
| chr1.3 | exon | 57961408 | 57961653 | 57961408 | ID=MS.gene44059.t1.exon4;Parent=MS.gene44059.t1 |
| chr1.3 | CDS | 57961408 | 57961653 | 57961408 | ID=cds.MS.gene44059.t1;Parent=MS.gene44059.t1 |
| chr1.3 | exon | 57960352 | 57961149 | 57960352 | ID=MS.gene44059.t1.exon5;Parent=MS.gene44059.t1 |
| chr1.3 | CDS | 57960352 | 57961149 | 57960352 | ID=cds.MS.gene44059.t1;Parent=MS.gene44059.t1 |
| chr1.3 | exon | 57960083 | 57960258 | 57960083 | ID=MS.gene44059.t1.exon6;Parent=MS.gene44059.t1 |
| chr1.3 | CDS | 57960083 | 57960258 | 57960083 | ID=cds.MS.gene44059.t1;Parent=MS.gene44059.t1 |
| chr1.3 | exon | 57959059 | 57959189 | 57959059 | ID=MS.gene44059.t1.exon7;Parent=MS.gene44059.t1 |
| chr1.3 | CDS | 57959059 | 57959189 | 57959059 | ID=cds.MS.gene44059.t1;Parent=MS.gene44059.t1 |
| chr1.3 | exon | 57956965 | 57957279 | 57956965 | ID=MS.gene44059.t1.exon8;Parent=MS.gene44059.t1 |
| chr1.3 | CDS | 57956965 | 57957279 | 57956965 | ID=cds.MS.gene44059.t1;Parent=MS.gene44059.t1 |
| Gene Sequence |
| Protein sequence |
