Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44129.t1 | XP_003591144.1 | 84.5 | 414 | 35 | 8 | 1 | 397 | 1 | 402 | 3.10E-94 | 355.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44129.t1 | Q84J88 | 57.9 | 76 | 31 | 1 | 9 | 84 | 21 | 95 | 1.7e-16 | 88.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44129.t1 | G7I8P5 | 84.5 | 414 | 35 | 8 | 1 | 397 | 1 | 402 | 2.3e-94 | 355.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056062 | MS.gene44129 | 0.863362 | 2.63E-64 | -1.69E-46 |
| MS.gene056618 | MS.gene44129 | 0.810143 | 1.33E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44129.t1 | MTR_1g083310 | 84.541 | 414 | 35 | 9 | 1 | 397 | 1 | 402 | 0.0 | 559 |
| MS.gene44129.t1 | MTR_7g113110 | 34.230 | 409 | 164 | 17 | 18 | 397 | 33 | 365 | 3.22e-33 | 127 |
| MS.gene44129.t1 | MTR_7g108560 | 44.776 | 134 | 62 | 3 | 1 | 130 | 1 | 126 | 3.63e-20 | 90.5 |
| MS.gene44129.t1 | MTR_1g107565 | 52.000 | 75 | 35 | 1 | 9 | 83 | 4 | 77 | 4.34e-17 | 82.4 |
| MS.gene44129.t1 | MTR_2g022250 | 56.944 | 72 | 30 | 1 | 15 | 86 | 7 | 77 | 5.94e-17 | 82.8 |
| MS.gene44129.t1 | MTR_4g117140 | 54.054 | 74 | 33 | 1 | 13 | 86 | 5 | 77 | 3.32e-16 | 80.5 |
| MS.gene44129.t1 | MTR_4g117220 | 54.054 | 74 | 33 | 1 | 13 | 86 | 5 | 77 | 4.30e-16 | 80.1 |
| MS.gene44129.t1 | MTR_2g022240 | 56.757 | 74 | 31 | 1 | 15 | 88 | 7 | 79 | 3.01e-15 | 77.4 |
| MS.gene44129.t1 | MTR_1g082650 | 50.725 | 69 | 33 | 1 | 15 | 83 | 7 | 74 | 3.78e-15 | 77.4 |
| MS.gene44129.t1 | MTR_2g436830 | 55.405 | 74 | 32 | 1 | 12 | 85 | 9 | 81 | 9.17e-15 | 74.7 |
| MS.gene44129.t1 | MTR_7g013660 | 37.209 | 86 | 49 | 2 | 15 | 96 | 1 | 85 | 3.87e-14 | 69.3 |
| MS.gene44129.t1 | MTR_4g073040 | 41.176 | 68 | 40 | 0 | 17 | 84 | 27 | 94 | 7.42e-14 | 69.3 |
| MS.gene44129.t1 | MTR_3g067750 | 50.000 | 68 | 33 | 1 | 15 | 82 | 9 | 75 | 1.49e-12 | 66.6 |
| MS.gene44129.t1 | MTR_3g117890 | 35.135 | 74 | 48 | 0 | 11 | 84 | 19 | 92 | 4.32e-12 | 64.3 |
| MS.gene44129.t1 | MTR_3g073670 | 44.444 | 63 | 34 | 1 | 22 | 84 | 30 | 91 | 1.32e-11 | 62.8 |
| MS.gene44129.t1 | MTR_1g092670 | 38.750 | 80 | 48 | 1 | 15 | 94 | 1 | 79 | 1.34e-11 | 60.5 |
| MS.gene44129.t1 | MTR_8g091420 | 45.455 | 66 | 35 | 1 | 19 | 84 | 30 | 94 | 2.70e-11 | 61.6 |
| MS.gene44129.t1 | MTR_6g026890 | 36.232 | 69 | 43 | 1 | 22 | 90 | 20 | 87 | 3.48e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44129.t1 | AT5G27690 | 50.495 | 101 | 45 | 2 | 9 | 105 | 21 | 120 | 2.81e-22 | 97.4 |
| MS.gene44129.t1 | AT1G56210 | 29.695 | 394 | 196 | 15 | 17 | 397 | 39 | 364 | 3.76e-21 | 94.4 |
| MS.gene44129.t1 | AT3G06130 | 52.703 | 74 | 34 | 1 | 13 | 86 | 5 | 77 | 1.47e-16 | 80.9 |
| MS.gene44129.t1 | AT3G06130 | 52.703 | 74 | 34 | 1 | 13 | 86 | 5 | 77 | 2.34e-16 | 80.9 |
| MS.gene44129.t1 | AT5G19090 | 52.703 | 74 | 34 | 1 | 13 | 86 | 5 | 77 | 3.16e-16 | 80.5 |
| MS.gene44129.t1 | AT5G19090 | 52.703 | 74 | 34 | 1 | 13 | 86 | 5 | 77 | 3.16e-16 | 80.5 |
| MS.gene44129.t1 | AT5G19090 | 52.703 | 74 | 34 | 1 | 13 | 86 | 5 | 77 | 4.82e-16 | 80.5 |
| MS.gene44129.t1 | AT5G19090 | 52.703 | 74 | 34 | 1 | 13 | 86 | 5 | 77 | 4.82e-16 | 80.5 |
| MS.gene44129.t1 | AT5G19090 | 52.703 | 74 | 34 | 1 | 13 | 86 | 5 | 77 | 4.82e-16 | 80.5 |
| MS.gene44129.t1 | AT1G23000 | 48.750 | 80 | 39 | 2 | 15 | 93 | 10 | 88 | 7.44e-16 | 78.6 |
| MS.gene44129.t1 | AT1G23000 | 48.750 | 80 | 39 | 2 | 15 | 93 | 70 | 148 | 2.06e-15 | 77.8 |
| MS.gene44129.t1 | AT5G37860 | 53.030 | 66 | 30 | 1 | 18 | 83 | 10 | 74 | 4.68e-14 | 72.0 |
| MS.gene44129.t1 | AT3G05220 | 47.826 | 69 | 35 | 1 | 15 | 83 | 7 | 74 | 3.36e-13 | 71.6 |
| MS.gene44129.t1 | AT5G66110 | 34.211 | 76 | 50 | 0 | 9 | 84 | 10 | 85 | 6.76e-13 | 66.2 |
| MS.gene44129.t1 | AT5G66110 | 34.211 | 76 | 50 | 0 | 9 | 84 | 10 | 85 | 6.76e-13 | 66.2 |
| MS.gene44129.t1 | AT4G35060 | 37.500 | 72 | 45 | 0 | 13 | 84 | 20 | 91 | 1.17e-12 | 65.9 |
| MS.gene44129.t1 | AT3G56240 | 34.579 | 107 | 67 | 2 | 18 | 122 | 3 | 108 | 1.22e-12 | 64.7 |
| MS.gene44129.t1 | AT3G56240 | 34.579 | 107 | 67 | 2 | 18 | 122 | 3 | 108 | 1.22e-12 | 64.7 |
| MS.gene44129.t1 | AT5G66110 | 38.983 | 59 | 36 | 0 | 26 | 84 | 1 | 59 | 8.51e-12 | 62.4 |
| MS.gene44129.t1 | AT4G38580 | 37.313 | 67 | 42 | 0 | 18 | 84 | 26 | 92 | 1.34e-11 | 62.8 |
| MS.gene44129.t1 | AT4G38580 | 37.313 | 67 | 42 | 0 | 18 | 84 | 26 | 92 | 1.34e-11 | 62.8 |
| MS.gene44129.t1 | AT1G66240 | 37.838 | 74 | 45 | 1 | 18 | 91 | 33 | 105 | 3.73e-11 | 60.1 |
Find 84 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTGTTCTTCTCTGGTTT+TGG | 0.218419 | 1.3:-58877535 | None:intergenic |
| TGTGATGAATTATACGATTC+TGG | 0.253530 | 1.3:-58878363 | None:intergenic |
| GCCGTTAACTTGAACGTTCT+TGG | 0.324864 | 1.3:-58877659 | None:intergenic |
| TGTTTCTCTTTGTTCTTCTC+TGG | 0.327013 | 1.3:-58877541 | None:intergenic |
| AACATGCTTCCCTGTCTTGT+TGG | 0.331354 | 1.3:-58877470 | None:intergenic |
| GGTTCATACGTGTACGGCCT+TGG | 0.369283 | 1.3:-58878342 | None:intergenic |
| CTGTCTTGTTGGTCAGTTTG+TGG | 0.373603 | 1.3:-58877459 | None:intergenic |
| TTTCATGGGCAAGTACATTC+AGG | 0.376558 | 1.3:+58878087 | MS.gene44129:CDS |
| GCACCGGGTACTGGTGGTTC+AGG | 0.381070 | 1.3:+58878024 | MS.gene44129:CDS |
| CCCGGTTGCGGAACCTTCGT+TGG | 0.381271 | 1.3:-58877731 | None:intergenic |
| CCCAACGAAGGTTCCGCAAC+CGG | 0.388912 | 1.3:+58877730 | MS.gene44129:CDS |
| ACTGTTTGCTTTCTCACCTC+TGG | 0.389171 | 1.3:-58877787 | None:intergenic |
| TCCAAGAACGTTCAAGTTAA+CGG | 0.392742 | 1.3:+58877658 | MS.gene44129:CDS |
| GCTATCACCACCAGTGTTAC+CGG | 0.393369 | 1.3:-58877908 | None:intergenic |
| ATACGCGCATGTGATGTATA+CGG | 0.405604 | 1.3:+58878299 | MS.gene44129:CDS |
| ACCAGTGTTACCGGTTGAAC+CGG | 0.408584 | 1.3:-58877899 | None:intergenic |
| TTCTCGGCTACCGGTTTGGC+TGG | 0.414295 | 1.3:-58877817 | None:intergenic |
| GGTTCCGCAACCGGGAAAAC+CGG | 0.416223 | 1.3:+58877739 | MS.gene44129:CDS |
| CAGGGAAGCATGTTGAGCTT+TGG | 0.426685 | 1.3:+58877479 | MS.gene44129:CDS |
| ATGACGTGGCGGTACTTCAT+TGG | 0.427491 | 1.3:-58878121 | None:intergenic |
| TTCCGTGATGCACCGGGTAC+TGG | 0.429866 | 1.3:+58878015 | MS.gene44129:CDS |
| CTTGCAGCCTGCGCAGTGAA+TGG | 0.435777 | 1.3:-58877164 | None:intergenic |
| TTTCACCCACCGCAGTACTA+TGG | 0.437794 | 1.3:+58878159 | MS.gene44129:CDS |
| GTGGCGGTACTTCATTGGTT+AGG | 0.440696 | 1.3:-58878116 | None:intergenic |
| TTTGAGAAAACCGGTTCAAC+CGG | 0.444090 | 1.3:+58877889 | MS.gene44129:CDS |
| AAGACATAAACATTGATTTG+AGG | 0.447883 | 1.3:+58877389 | MS.gene44129:CDS |
| CCGGTTGCGGAACCTTCGTT+GGG | 0.448407 | 1.3:-58877730 | None:intergenic |
| GTACTGGTGGTTCAGGTAAC+CGG | 0.450368 | 1.3:+58878031 | MS.gene44129:CDS |
| GGTTCTTCATTATCATCGTT+AGG | 0.452727 | 1.3:-58877865 | None:intergenic |
| AAAGTACACAAAATTCTTCA+AGG | 0.454064 | 1.3:+58877190 | MS.gene44129:CDS |
| CGGTCAAATGGTCAATTTCA+AGG | 0.454759 | 1.3:+58878051 | MS.gene44129:CDS |
| AAAATTCTTCAAGGCATTCA+AGG | 0.467569 | 1.3:+58877199 | MS.gene44129:CDS |
| TGATGGCTCACGGTAACAAC+CGG | 0.471619 | 1.3:-58878213 | None:intergenic |
| GATGTATACGGGAAATGAAA+TGG | 0.473841 | 1.3:+58878311 | MS.gene44129:CDS |
| AACTTGAACGTTCTTGGATG+TGG | 0.475224 | 1.3:-58877653 | None:intergenic |
| CACATGACATTACACGCATT+AGG | 0.475926 | 1.3:-58878423 | None:intergenic |
| GAAGAACCATTTGAGAAAAC+CGG | 0.477484 | 1.3:+58877880 | MS.gene44129:CDS |
| CACAAACTGACCAACAAGAC+AGG | 0.483302 | 1.3:+58877460 | MS.gene44129:CDS |
| GAAAACAACAACAACGGAAC+AGG | 0.484637 | 1.3:+58877616 | MS.gene44129:CDS |
| TACGTGTACGGCCTTGGCTG+AGG | 0.491015 | 1.3:-58878336 | None:intergenic |
| CTTGAAATTGACCATTTGAC+CGG | 0.491863 | 1.3:-58878050 | None:intergenic |
| AGTGGTGTTACCAGCCAAAC+CGG | 0.494179 | 1.3:+58877807 | MS.gene44129:CDS |
| GGTTCAGGTAACCGGTCAAA+TGG | 0.494989 | 1.3:+58878039 | MS.gene44129:CDS |
| TGAACACTTCCGTGATGCAC+CGG | 0.507152 | 1.3:+58878008 | MS.gene44129:CDS |
| ATCACATGCGCGTATTGATA+CGG | 0.512526 | 1.3:-58878291 | None:intergenic |
| AAAGTTTCCATTCACTGCGC+AGG | 0.512592 | 1.3:+58877157 | MS.gene44129:CDS |
| TATCCTAGCAGCAGTAGTTA+CGG | 0.527016 | 1.3:+58878243 | MS.gene44129:CDS |
| GCTAAAAGCGGCAACGGAAG+CGG | 0.527918 | 1.3:+58877688 | MS.gene44129:CDS |
| ACCGGTTCAACCGGTAACAC+TGG | 0.546173 | 1.3:+58877898 | MS.gene44129:CDS |
| GCAGCAGCAAAATGAGATTG+AGG | 0.556418 | 1.3:-58878186 | None:intergenic |
| TGCGCGTATTGATACGGTTG+TGG | 0.564403 | 1.3:-58878285 | None:intergenic |
| TACGCGCATGTGATGTATAC+GGG | 0.569284 | 1.3:+58878300 | MS.gene44129:CDS |
| CCAACGAAGGTTCCGCAACC+GGG | 0.574607 | 1.3:+58877731 | MS.gene44129:CDS |
| GAACACTTCCGTGATGCACC+GGG | 0.582325 | 1.3:+58878009 | MS.gene44129:CDS |
| GCACCGTAACTACTGCTGCT+AGG | 0.585225 | 1.3:-58878246 | None:intergenic |
| TGCTAGGATACGCTGTATGA+TGG | 0.586279 | 1.3:-58878230 | None:intergenic |
| AACACCGCTAAAAGCGGCAA+CGG | 0.586332 | 1.3:+58877682 | MS.gene44129:CDS |
| TTACCTGAACCACCAGTACC+CGG | 0.601937 | 1.3:-58878027 | None:intergenic |
| CACCAGTACCCGGTGCATCA+CGG | 0.602569 | 1.3:-58878017 | None:intergenic |
| CGTGATGCACCGGGTACTGG+TGG | 0.603532 | 1.3:+58878018 | MS.gene44129:CDS |
| TTCACAACATCTCAACTACA+AGG | 0.605083 | 1.3:+58877003 | MS.gene44129:CDS |
| ATGAAATGGAGCCTCAGCCA+AGG | 0.607085 | 1.3:+58878325 | MS.gene44129:CDS |
| AACGGCAACACCGCTAAAAG+CGG | 0.614579 | 1.3:+58877676 | MS.gene44129:CDS |
| AACAGTGAAAACAACAACAA+CGG | 0.621781 | 1.3:+58877610 | MS.gene44129:CDS |
| GGAGGACCATAGTACTGCGG+TGG | 0.622560 | 1.3:-58878165 | None:intergenic |
| TTCAGCTTGTGTCTCTGATG+CGG | 0.631924 | 1.3:-58876975 | None:intergenic |
| ACAAACTGACCAACAAGACA+GGG | 0.636532 | 1.3:+58877461 | MS.gene44129:CDS |
| GATTCTGGTTCATACGTGTA+CGG | 0.638610 | 1.3:-58878348 | None:intergenic |
| AAATAAACAAAAGAATCTGA+CGG | 0.643148 | 1.3:-58878387 | None:intergenic |
| ATACGCTGTATGATGGCTCA+CGG | 0.643410 | 1.3:-58878223 | None:intergenic |
| AACACTGGTGGTGATAGCAG+TGG | 0.644515 | 1.3:+58877913 | MS.gene44129:CDS |
| GAGGACCATAGTACTGCGGT+GGG | 0.654907 | 1.3:-58878164 | None:intergenic |
| TGGCTCACGGTAACAACCGG+TGG | 0.659488 | 1.3:-58878210 | None:intergenic |
| GCGTATTGATACGGTTGTGG+AGG | 0.666718 | 1.3:-58878282 | None:intergenic |
| GGTTCAACCGGTAACACTGG+TGG | 0.667820 | 1.3:+58877901 | MS.gene44129:CDS |
| CTCTTGAACATGTACCACGC+CGG | 0.671118 | 1.3:-58877758 | None:intergenic |
| GCAGCAAAATGAGATTGAGG+AGG | 0.681939 | 1.3:-58878183 | None:intergenic |
| CGCAACCGGGAAAACCGGCG+TGG | 0.690224 | 1.3:+58877744 | MS.gene44129:CDS |
| AGAGGTGAGAAAGCAAACAG+TGG | 0.698353 | 1.3:+58877789 | MS.gene44129:CDS |
| AAAGTTAACAAACCCAACGA+AGG | 0.699189 | 1.3:+58877718 | MS.gene44129:CDS |
| TGTTCAAGAGCTAAAGCCAG+AGG | 0.702356 | 1.3:+58877771 | MS.gene44129:CDS |
| TGTTCGTTAATGTAATGACG+TGG | 0.709464 | 1.3:-58878135 | None:intergenic |
| TCGTTAATGTAATGACGTGG+CGG | 0.723759 | 1.3:-58878132 | None:intergenic |
| TGAGGAGGACCATAGTACTG+CGG | 0.754897 | 1.3:-58878168 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATAACAATAAAAGAT+AGG | - | chr1.3:58877250-58877269 | None:intergenic | 10.0% |
| !! | AAATAAACAAAAGAATCTGA+CGG | - | chr1.3:58878390-58878409 | None:intergenic | 20.0% |
| !! | TGAAAAAGAAGAAAAAGAAA+GGG | + | chr1.3:58877938-58877957 | MS.gene44129:CDS | 20.0% |
| ! | AAAGTACACAAAATTCTTCA+AGG | + | chr1.3:58877190-58877209 | MS.gene44129:CDS | 25.0% |
| ! | AACAAAAAGTAATAGTAACG+GGG | + | chr1.3:58877413-58877432 | MS.gene44129:CDS | 25.0% |
| ! | AATGAAATGAAAGTAAGAGA+TGG | - | chr1.3:58877042-58877061 | None:intergenic | 25.0% |
| ! | CAACAAAAAGTAATAGTAAC+GGG | + | chr1.3:58877412-58877431 | MS.gene44129:CDS | 25.0% |
| ! | GCAACAAAAAGTAATAGTAA+CGG | + | chr1.3:58877411-58877430 | MS.gene44129:CDS | 25.0% |
| ! | GTGAAAAAGAAGAAAAAGAA+AGG | + | chr1.3:58877937-58877956 | MS.gene44129:CDS | 25.0% |
| ! | TTTACACTCTTGTATAATCT+AGG | + | chr1.3:58877361-58877380 | MS.gene44129:intron | 25.0% |
| !! | GTCAAAGTAGTAATTTTCAT+GGG | + | chr1.3:58878073-58878092 | MS.gene44129:CDS | 25.0% |
| !!! | AAGACATAAACATTGATTTG+AGG | + | chr1.3:58877389-58877408 | MS.gene44129:CDS | 25.0% |
| !!! | TTCTTCTTTTTTGATTCTGT+TGG | - | chr1.3:58877511-58877530 | None:intergenic | 25.0% |
| AACAGTGAAAACAACAACAA+CGG | + | chr1.3:58877610-58877629 | MS.gene44129:CDS | 30.0% | |
| AAGAAGAAAAAGAAAGGGAA+AGG | + | chr1.3:58877943-58877962 | MS.gene44129:CDS | 30.0% | |
| AGAAGACGATGTTAATGAAA+AGG | - | chr1.3:58877305-58877324 | None:intergenic | 30.0% | |
| ATTAACATCGTCTTCTATGA+AGG | + | chr1.3:58877309-58877328 | MS.gene44129:intron | 30.0% | |
| TGTGATGAATTATACGATTC+TGG | - | chr1.3:58878366-58878385 | None:intergenic | 30.0% | |
| TTAACATCGTCTTCTATGAA+GGG | + | chr1.3:58877310-58877329 | MS.gene44129:intron | 30.0% | |
| ! | AAAATTCTTCAAGGCATTCA+AGG | + | chr1.3:58877199-58877218 | MS.gene44129:CDS | 30.0% |
| ! | GGTCAAAGTAGTAATTTTCA+TGG | + | chr1.3:58878072-58878091 | MS.gene44129:CDS | 30.0% |
| !!! | TTTTTTGATTCTGTTGGTTC+AGG | - | chr1.3:58877505-58877524 | None:intergenic | 30.0% |
| AAAGTTAACAAACCCAACGA+AGG | + | chr1.3:58877718-58877737 | MS.gene44129:CDS | 35.0% | |
| AACAAGATTAGAAGCAGTTG+AGG | - | chr1.3:58877104-58877123 | None:intergenic | 35.0% | |
| AGACGATGTTAATGAAAAGG+AGG | - | chr1.3:58877302-58877321 | None:intergenic | 35.0% | |
| CTTGAAATTGACCATTTGAC+CGG | - | chr1.3:58878053-58878072 | None:intergenic | 35.0% | |
| GAAGAACCATTTGAGAAAAC+CGG | + | chr1.3:58877880-58877899 | MS.gene44129:CDS | 35.0% | |
| GACGATGTTAATGAAAAGGA+GGG | - | chr1.3:58877301-58877320 | None:intergenic | 35.0% | |
| GATGTATACGGGAAATGAAA+TGG | + | chr1.3:58878311-58878330 | MS.gene44129:CDS | 35.0% | |
| GGTTCTTCATTATCATCGTT+AGG | - | chr1.3:58877868-58877887 | None:intergenic | 35.0% | |
| TGTTCGTTAATGTAATGACG+TGG | - | chr1.3:58878138-58878157 | None:intergenic | 35.0% | |
| TGTTTCTCTTTGTTCTTCTC+TGG | - | chr1.3:58877544-58877563 | None:intergenic | 35.0% | |
| TTCACAACATCTCAACTACA+AGG | + | chr1.3:58877003-58877022 | MS.gene44129:CDS | 35.0% | |
| ! | TCCAAGAACGTTCAAGTTAA+CGG | + | chr1.3:58877658-58877677 | MS.gene44129:CDS | 35.0% |
| !! | TCTTTGTTCTTCTCTGGTTT+TGG | - | chr1.3:58877538-58877557 | None:intergenic | 35.0% |
| AACTTGAACGTTCTTGGATG+TGG | - | chr1.3:58877656-58877675 | None:intergenic | 40.0% | |
| ACAAACTGACCAACAAGACA+GGG | + | chr1.3:58877461-58877480 | MS.gene44129:CDS | 40.0% | |
| ATACGCGCATGTGATGTATA+CGG | + | chr1.3:58878299-58878318 | MS.gene44129:CDS | 40.0% | |
| CACATGACATTACACGCATT+AGG | - | chr1.3:58878426-58878445 | None:intergenic | 40.0% | |
| CAGTTGTCTGAGAGACAAAA+TGG | - | chr1.3:58877132-58877151 | None:intergenic | 40.0% | |
| CGGTCAAATGGTCAATTTCA+AGG | + | chr1.3:58878051-58878070 | MS.gene44129:CDS | 40.0% | |
| GAAAACAACAACAACGGAAC+AGG | + | chr1.3:58877616-58877635 | MS.gene44129:CDS | 40.0% | |
| GCAGTTGAGGAAGAATAGTA+CGG | - | chr1.3:58877091-58877110 | None:intergenic | 40.0% | |
| TATCCTAGCAGCAGTAGTTA+CGG | + | chr1.3:58878243-58878262 | MS.gene44129:CDS | 40.0% | |
| TCGTTAATGTAATGACGTGG+CGG | - | chr1.3:58878135-58878154 | None:intergenic | 40.0% | |
| TTTCATGGGCAAGTACATTC+AGG | + | chr1.3:58878087-58878106 | MS.gene44129:CDS | 40.0% | |
| ! | ATCACATGCGCGTATTGATA+CGG | - | chr1.3:58878294-58878313 | None:intergenic | 40.0% |
| ! | TACGGAAGAGTACGTTGTTA+GGG | - | chr1.3:58877073-58877092 | None:intergenic | 40.0% |
| ! | TTTGAGAAAACCGGTTCAAC+CGG | + | chr1.3:58877889-58877908 | MS.gene44129:CDS | 40.0% |
| !! | GATTCTGGTTCATACGTGTA+CGG | - | chr1.3:58878351-58878370 | None:intergenic | 40.0% |
| !! | GTTGAACCGGTTTTCTCAAA+TGG | - | chr1.3:58877889-58877908 | None:intergenic | 40.0% |
| !!! | CTAACTTTTTTCTCGGCTAC+CGG | - | chr1.3:58877829-58877848 | None:intergenic | 40.0% |
| !!! | TGCGACGCTAACTTTTTTCT+CGG | - | chr1.3:58877836-58877855 | None:intergenic | 40.0% |
| AAAGTTTCCATTCACTGCGC+AGG | + | chr1.3:58877157-58877176 | MS.gene44129:CDS | 45.0% | |
| AACATGCTTCCCTGTCTTGT+TGG | - | chr1.3:58877473-58877492 | None:intergenic | 45.0% | |
| ACTGTTTGCTTTCTCACCTC+TGG | - | chr1.3:58877790-58877809 | None:intergenic | 45.0% | |
| AGAGGTGAGAAAGCAAACAG+TGG | + | chr1.3:58877789-58877808 | MS.gene44129:CDS | 45.0% | |
| ATACGCTGTATGATGGCTCA+CGG | - | chr1.3:58878226-58878245 | None:intergenic | 45.0% | |
| CACAAACTGACCAACAAGAC+AGG | + | chr1.3:58877460-58877479 | MS.gene44129:CDS | 45.0% | |
| GCAGCAAAATGAGATTGAGG+AGG | - | chr1.3:58878186-58878205 | None:intergenic | 45.0% | |
| GCAGCAGCAAAATGAGATTG+AGG | - | chr1.3:58878189-58878208 | None:intergenic | 45.0% | |
| TACGCGCATGTGATGTATAC+GGG | + | chr1.3:58878300-58878319 | MS.gene44129:CDS | 45.0% | |
| TGCTAGGATACGCTGTATGA+TGG | - | chr1.3:58878233-58878252 | None:intergenic | 45.0% | |
| TGTTCAAGAGCTAAAGCCAG+AGG | + | chr1.3:58877771-58877790 | MS.gene44129:CDS | 45.0% | |
| TTCAGCTTGTGTCTCTGATG+CGG | - | chr1.3:58876978-58876997 | None:intergenic | 45.0% | |
| ! | CTGTCTTGTTGGTCAGTTTG+TGG | - | chr1.3:58877462-58877481 | None:intergenic | 45.0% |
| ! | GCCGTTAACTTGAACGTTCT+TGG | - | chr1.3:58877662-58877681 | None:intergenic | 45.0% |
| ! | GTACGGAAGAGTACGTTGTT+AGG | - | chr1.3:58877074-58877093 | None:intergenic | 45.0% |
| !!! | TTTTTTCTCGGCTACCGGTT+TGG | - | chr1.3:58877824-58877843 | None:intergenic | 45.0% |
| AACACCGCTAAAAGCGGCAA+CGG | + | chr1.3:58877682-58877701 | MS.gene44129:CDS | 50.0% | |
| AACGGCAACACCGCTAAAAG+CGG | + | chr1.3:58877676-58877695 | MS.gene44129:CDS | 50.0% | |
| ATGAAATGGAGCCTCAGCCA+AGG | + | chr1.3:58878325-58878344 | MS.gene44129:CDS | 50.0% | |
| ATGACGTGGCGGTACTTCAT+TGG | - | chr1.3:58878124-58878143 | None:intergenic | 50.0% | |
| CTCTTGAACATGTACCACGC+CGG | - | chr1.3:58877761-58877780 | None:intergenic | 50.0% | |
| GCTATCACCACCAGTGTTAC+CGG | - | chr1.3:58877911-58877930 | None:intergenic | 50.0% | |
| GGTTCAGGTAACCGGTCAAA+TGG | + | chr1.3:58878039-58878058 | MS.gene44129:CDS | 50.0% | |
| TGAACACTTCCGTGATGCAC+CGG | + | chr1.3:58878008-58878027 | MS.gene44129:CDS | 50.0% | |
| TGAGGAGGACCATAGTACTG+CGG | - | chr1.3:58878171-58878190 | None:intergenic | 50.0% | |
| TGATGGCTCACGGTAACAAC+CGG | - | chr1.3:58878216-58878235 | None:intergenic | 50.0% | |
| TTACCTGAACCACCAGTACC+CGG | - | chr1.3:58878030-58878049 | None:intergenic | 50.0% | |
| TTTCACCCACCGCAGTACTA+TGG | + | chr1.3:58878159-58878178 | MS.gene44129:CDS | 50.0% | |
| ! | AACACTGGTGGTGATAGCAG+TGG | + | chr1.3:58877913-58877932 | MS.gene44129:CDS | 50.0% |
| ! | ACCAGTGTTACCGGTTGAAC+CGG | - | chr1.3:58877902-58877921 | None:intergenic | 50.0% |
| ! | CAGGGAAGCATGTTGAGCTT+TGG | + | chr1.3:58877479-58877498 | MS.gene44129:CDS | 50.0% |
| ! | GCGTATTGATACGGTTGTGG+AGG | - | chr1.3:58878285-58878304 | None:intergenic | 50.0% |
| ! | GTACTGGTGGTTCAGGTAAC+CGG | + | chr1.3:58878031-58878050 | MS.gene44129:CDS | 50.0% |
| ! | GTGGCGGTACTTCATTGGTT+AGG | - | chr1.3:58878119-58878138 | None:intergenic | 50.0% |
| ! | TCATTTTGCTGCTGCTCCAC+CGG | + | chr1.3:58878194-58878213 | MS.gene44129:CDS | 50.0% |
| ! | TGCGCGTATTGATACGGTTG+TGG | - | chr1.3:58878288-58878307 | None:intergenic | 50.0% |
| !! | AGTGGTGTTACCAGCCAAAC+CGG | + | chr1.3:58877807-58877826 | MS.gene44129:CDS | 50.0% |
| GAACACTTCCGTGATGCACC+GGG | + | chr1.3:58878009-58878028 | MS.gene44129:CDS | 55.0% | |
| GAGGACCATAGTACTGCGGT+GGG | - | chr1.3:58878167-58878186 | None:intergenic | 55.0% | |
| GCACCGTAACTACTGCTGCT+AGG | - | chr1.3:58878249-58878268 | None:intergenic | 55.0% | |
| GCTAAAAGCGGCAACGGAAG+CGG | + | chr1.3:58877688-58877707 | MS.gene44129:CDS | 55.0% | |
| GGTTCAACCGGTAACACTGG+TGG | + | chr1.3:58877901-58877920 | MS.gene44129:CDS | 55.0% | |
| GGTTCATACGTGTACGGCCT+TGG | - | chr1.3:58878345-58878364 | None:intergenic | 55.0% | |
| ! | ACCGGTTCAACCGGTAACAC+TGG | + | chr1.3:58877898-58877917 | MS.gene44129:CDS | 55.0% |
| !!! | ATGTACCACGCCGGTTTTCC+CGG | - | chr1.3:58877752-58877771 | None:intergenic | 55.0% |
| !!! | GCTTCCGTTGCCGCTTTTAG+CGG | - | chr1.3:58877689-58877708 | None:intergenic | 55.0% |
| CACCAGTACCCGGTGCATCA+CGG | - | chr1.3:58878020-58878039 | None:intergenic | 60.0% | |
| CCAACGAAGGTTCCGCAACC+GGG | + | chr1.3:58877731-58877750 | MS.gene44129:CDS | 60.0% | |
| CCCAACGAAGGTTCCGCAAC+CGG | + | chr1.3:58877730-58877749 | MS.gene44129:CDS | 60.0% | |
| CCGGTTGCGGAACCTTCGTT+GGG | - | chr1.3:58877733-58877752 | None:intergenic | 60.0% | |
| CTTGCAGCCTGCGCAGTGAA+TGG | - | chr1.3:58877167-58877186 | None:intergenic | 60.0% | |
| GGAGGACCATAGTACTGCGG+TGG | - | chr1.3:58878168-58878187 | None:intergenic | 60.0% | |
| GGTTCCGCAACCGGGAAAAC+CGG | + | chr1.3:58877739-58877758 | MS.gene44129:CDS | 60.0% | |
| TACGTGTACGGCCTTGGCTG+AGG | - | chr1.3:58878339-58878358 | None:intergenic | 60.0% | |
| TGGCTCACGGTAACAACCGG+TGG | - | chr1.3:58878213-58878232 | None:intergenic | 60.0% | |
| TTCCGTGATGCACCGGGTAC+TGG | + | chr1.3:58878015-58878034 | MS.gene44129:CDS | 60.0% | |
| !! | TTCTCGGCTACCGGTTTGGC+TGG | - | chr1.3:58877820-58877839 | None:intergenic | 60.0% |
| CCCGGTTGCGGAACCTTCGT+TGG | - | chr1.3:58877734-58877753 | None:intergenic | 65.0% | |
| !! | CGTGATGCACCGGGTACTGG+TGG | + | chr1.3:58878018-58878037 | MS.gene44129:CDS | 65.0% |
| !! | GCACCGGGTACTGGTGGTTC+AGG | + | chr1.3:58878024-58878043 | MS.gene44129:CDS | 65.0% |
| !!! | CACGCCGGTTTTCCCGGTTG+CGG | - | chr1.3:58877746-58877765 | None:intergenic | 65.0% |
| CGCAACCGGGAAAACCGGCG+TGG | + | chr1.3:58877744-58877763 | MS.gene44129:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 58876971 | 58878446 | 58876971 | ID=MS.gene44129 |
| chr1.3 | mRNA | 58876971 | 58878446 | 58876971 | ID=MS.gene44129.t1;Parent=MS.gene44129 |
| chr1.3 | exon | 58876971 | 58877024 | 58876971 | ID=MS.gene44129.t1.exon1;Parent=MS.gene44129.t1 |
| chr1.3 | CDS | 58876971 | 58877024 | 58876971 | ID=cds.MS.gene44129.t1;Parent=MS.gene44129.t1 |
| chr1.3 | exon | 58877145 | 58877220 | 58877145 | ID=MS.gene44129.t1.exon2;Parent=MS.gene44129.t1 |
| chr1.3 | CDS | 58877145 | 58877220 | 58877145 | ID=cds.MS.gene44129.t1;Parent=MS.gene44129.t1 |
| chr1.3 | exon | 58877383 | 58878446 | 58877383 | ID=MS.gene44129.t1.exon3;Parent=MS.gene44129.t1 |
| chr1.3 | CDS | 58877383 | 58878446 | 58877383 | ID=cds.MS.gene44129.t1;Parent=MS.gene44129.t1 |
| Gene Sequence |
| Protein sequence |
