Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056062.t1 | XP_003591144.1 | 75.8 | 414 | 73 | 6 | 1 | 399 | 1 | 402 | 4.40E-96 | 361.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056062.t1 | Q84J88 | 57.9 | 76 | 31 | 1 | 9 | 84 | 21 | 95 | 2.3e-16 | 88.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056062.t1 | G7I8P5 | 75.8 | 414 | 73 | 6 | 1 | 399 | 1 | 402 | 3.2e-96 | 361.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056062 | MS.gene39297 | 0.803813 | 2.91E-49 | -1.69E-46 |
| MS.gene056062 | MS.gene44129 | 0.863362 | 2.63E-64 | -1.69E-46 |
| MS.gene056062 | MS.gene45937 | 0.81083 | 9.48E-51 | -1.69E-46 |
| MS.gene056062 | MS.gene69800 | -0.811811 | 5.81E-51 | -1.69E-46 |
| MS.gene056062 | MS.gene87270 | -0.806428 | 8.26E-50 | -1.69E-46 |
| MS.gene056062 | MS.gene99807 | -0.812663 | 3.79E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056062.t1 | MTR_1g083310 | 84.300 | 414 | 38 | 8 | 1 | 399 | 1 | 402 | 0.0 | 563 |
| MS.gene056062.t1 | MTR_7g113110 | 34.826 | 402 | 173 | 16 | 18 | 399 | 33 | 365 | 1.28e-33 | 129 |
| MS.gene056062.t1 | MTR_7g108560 | 43.284 | 134 | 64 | 3 | 1 | 130 | 1 | 126 | 3.76e-19 | 87.8 |
| MS.gene056062.t1 | MTR_1g107565 | 52.000 | 75 | 35 | 1 | 9 | 83 | 4 | 77 | 1.67e-17 | 83.6 |
| MS.gene056062.t1 | MTR_2g022250 | 56.944 | 72 | 30 | 1 | 15 | 86 | 7 | 77 | 2.07e-17 | 84.3 |
| MS.gene056062.t1 | MTR_4g117140 | 54.054 | 74 | 33 | 1 | 13 | 86 | 5 | 77 | 6.99e-17 | 82.8 |
| MS.gene056062.t1 | MTR_4g117220 | 54.054 | 74 | 33 | 1 | 13 | 86 | 5 | 77 | 9.12e-17 | 82.4 |
| MS.gene056062.t1 | MTR_2g022240 | 56.757 | 74 | 31 | 1 | 15 | 88 | 7 | 79 | 7.12e-16 | 79.3 |
| MS.gene056062.t1 | MTR_7g013660 | 39.535 | 86 | 47 | 2 | 15 | 96 | 1 | 85 | 1.94e-15 | 72.8 |
| MS.gene056062.t1 | MTR_2g436830 | 55.405 | 74 | 32 | 1 | 12 | 85 | 9 | 81 | 5.48e-15 | 75.5 |
| MS.gene056062.t1 | MTR_1g082650 | 49.275 | 69 | 34 | 1 | 15 | 83 | 7 | 74 | 6.42e-15 | 77.0 |
| MS.gene056062.t1 | MTR_4g073040 | 41.176 | 68 | 40 | 0 | 17 | 84 | 27 | 94 | 1.17e-13 | 68.6 |
| MS.gene056062.t1 | MTR_3g067750 | 51.471 | 68 | 32 | 1 | 15 | 82 | 9 | 75 | 4.19e-13 | 68.6 |
| MS.gene056062.t1 | MTR_1g092670 | 41.250 | 80 | 46 | 1 | 15 | 94 | 1 | 79 | 4.63e-13 | 64.7 |
| MS.gene056062.t1 | MTR_8g091420 | 48.485 | 66 | 33 | 1 | 19 | 84 | 30 | 94 | 1.68e-12 | 65.1 |
| MS.gene056062.t1 | MTR_3g117890 | 36.486 | 74 | 47 | 0 | 11 | 84 | 19 | 92 | 2.61e-12 | 64.7 |
| MS.gene056062.t1 | MTR_6g026890 | 36.232 | 69 | 43 | 1 | 22 | 90 | 20 | 87 | 6.26e-12 | 63.5 |
| MS.gene056062.t1 | MTR_3g073670 | 46.032 | 63 | 33 | 1 | 22 | 84 | 30 | 91 | 9.60e-12 | 63.2 |
| MS.gene056062.t1 | MTR_2g018790 | 38.182 | 110 | 63 | 4 | 19 | 125 | 9 | 116 | 1.54e-11 | 65.1 |
| MS.gene056062.t1 | MTR_3g087770 | 44.776 | 67 | 36 | 1 | 18 | 84 | 30 | 95 | 4.71e-11 | 61.2 |
| MS.gene056062.t1 | MTR_1g030630 | 37.500 | 72 | 44 | 1 | 13 | 84 | 20 | 90 | 7.65e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056062.t1 | AT5G27690 | 50.495 | 101 | 45 | 2 | 9 | 105 | 21 | 120 | 3.29e-22 | 97.1 |
| MS.gene056062.t1 | AT1G56210 | 52.222 | 90 | 34 | 2 | 17 | 106 | 39 | 119 | 1.67e-18 | 86.7 |
| MS.gene056062.t1 | AT3G06130 | 52.703 | 74 | 34 | 1 | 13 | 86 | 5 | 77 | 7.67e-17 | 81.6 |
| MS.gene056062.t1 | AT3G06130 | 52.703 | 74 | 34 | 1 | 13 | 86 | 5 | 77 | 1.14e-16 | 82.0 |
| MS.gene056062.t1 | AT5G19090 | 52.703 | 74 | 34 | 1 | 13 | 86 | 5 | 77 | 1.81e-16 | 81.3 |
| MS.gene056062.t1 | AT5G19090 | 52.703 | 74 | 34 | 1 | 13 | 86 | 5 | 77 | 1.81e-16 | 81.3 |
| MS.gene056062.t1 | AT5G19090 | 52.703 | 74 | 34 | 1 | 13 | 86 | 5 | 77 | 2.34e-16 | 81.3 |
| MS.gene056062.t1 | AT5G19090 | 52.703 | 74 | 34 | 1 | 13 | 86 | 5 | 77 | 2.34e-16 | 81.3 |
| MS.gene056062.t1 | AT5G19090 | 52.703 | 74 | 34 | 1 | 13 | 86 | 5 | 77 | 2.34e-16 | 81.3 |
| MS.gene056062.t1 | AT1G23000 | 48.750 | 80 | 39 | 2 | 15 | 93 | 10 | 88 | 3.12e-16 | 79.7 |
| MS.gene056062.t1 | AT1G23000 | 48.750 | 80 | 39 | 2 | 15 | 93 | 70 | 148 | 9.62e-16 | 79.0 |
| MS.gene056062.t1 | AT5G37860 | 54.545 | 66 | 29 | 1 | 18 | 83 | 10 | 74 | 4.30e-15 | 75.1 |
| MS.gene056062.t1 | AT3G56240 | 36.449 | 107 | 65 | 2 | 18 | 122 | 3 | 108 | 4.61e-14 | 68.9 |
| MS.gene056062.t1 | AT3G56240 | 36.449 | 107 | 65 | 2 | 18 | 122 | 3 | 108 | 4.61e-14 | 68.9 |
| MS.gene056062.t1 | AT3G05220 | 47.826 | 69 | 35 | 1 | 15 | 83 | 7 | 74 | 1.78e-13 | 72.4 |
| MS.gene056062.t1 | AT1G66240 | 40.541 | 74 | 43 | 1 | 18 | 91 | 33 | 105 | 1.97e-12 | 63.9 |
| MS.gene056062.t1 | AT5G66110 | 32.941 | 85 | 56 | 1 | 1 | 84 | 1 | 85 | 2.39e-12 | 64.7 |
| MS.gene056062.t1 | AT5G66110 | 32.941 | 85 | 56 | 1 | 1 | 84 | 1 | 85 | 2.39e-12 | 64.7 |
| MS.gene056062.t1 | AT5G66110 | 38.983 | 59 | 36 | 0 | 26 | 84 | 1 | 59 | 3.22e-11 | 60.8 |
| MS.gene056062.t1 | AT3G56240 | 34.343 | 99 | 62 | 2 | 26 | 122 | 1 | 98 | 3.26e-11 | 60.5 |
| MS.gene056062.t1 | AT4G38580 | 37.313 | 67 | 42 | 0 | 18 | 84 | 26 | 92 | 4.36e-11 | 61.2 |
| MS.gene056062.t1 | AT4G38580 | 37.313 | 67 | 42 | 0 | 18 | 84 | 26 | 92 | 4.36e-11 | 61.2 |
| MS.gene056062.t1 | AT4G35060 | 34.722 | 72 | 47 | 0 | 13 | 84 | 20 | 91 | 5.28e-11 | 60.8 |
| MS.gene056062.t1 | AT4G08570 | 41.176 | 68 | 38 | 2 | 18 | 84 | 26 | 92 | 8.61e-11 | 60.5 |
Find 83 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTGTTCTTCTCTGGTTT+TGG | 0.218419 | 1.1:-61616643 | None:intergenic |
| TGTGATGAATTATACGATTC+TGG | 0.253530 | 1.1:-61617477 | None:intergenic |
| GCCGTTAACTTGAACGTTCT+TGG | 0.324864 | 1.1:-61616767 | None:intergenic |
| TGTTTCTCTTTGTTCTTCTC+TGG | 0.327013 | 1.1:-61616649 | None:intergenic |
| AACATGCTTCCCTGTCTTGT+TGG | 0.331354 | 1.1:-61616578 | None:intergenic |
| GCTATCACCACCTGTGTTAC+CGG | 0.352277 | 1.1:-61617022 | None:intergenic |
| ACCTGTGTTACCGGTTGAAC+CGG | 0.367015 | 1.1:-61617013 | None:intergenic |
| GGTTCATACGTGTACGGCCT+TGG | 0.369283 | 1.1:-61617456 | None:intergenic |
| CTGTCTTGTTGGTCAGTTTG+TGG | 0.373603 | 1.1:-61616567 | None:intergenic |
| TTTCATGGGCAAGTACATTC+AGG | 0.376558 | 1.1:+61617201 | MS.gene056062:CDS |
| CCCGGTTGCGGAACCTTCGT+TGG | 0.381271 | 1.1:-61616839 | None:intergenic |
| GCACCGGGTACTGGTGGTTC+AGG | 0.388277 | 1.1:+61617138 | MS.gene056062:CDS |
| CCCAACGAAGGTTCCGCAAC+CGG | 0.388912 | 1.1:+61616838 | MS.gene056062:CDS |
| ACTGTTTGCTTTCTCACCTC+TGG | 0.389171 | 1.1:-61616895 | None:intergenic |
| TCCAAGAACGTTCAAGTTAA+CGG | 0.392742 | 1.1:+61616766 | MS.gene056062:CDS |
| TTCTCGGCTACCGGTTTGGC+TGG | 0.414295 | 1.1:-61616925 | None:intergenic |
| GGTTCCGCAACCGGGAAAAC+CGG | 0.416223 | 1.1:+61616847 | MS.gene056062:CDS |
| AATGAGAAAACCGGTTCAAC+CGG | 0.423174 | 1.1:+61617003 | MS.gene056062:CDS |
| CAGGGAAGCATGTTGAGCTT+TGG | 0.426685 | 1.1:+61616587 | MS.gene056062:CDS |
| ATGACGTGGCGGTACTTCAT+TGG | 0.427491 | 1.1:-61617235 | None:intergenic |
| TTCCGTAATGCACCGGGTAC+TGG | 0.430655 | 1.1:+61617129 | MS.gene056062:CDS |
| CTTGCAGCCTGCGCAGTGAA+TGG | 0.433758 | 1.1:-61616276 | None:intergenic |
| CACCAGTACCCGGTGCATTA+CGG | 0.435816 | 1.1:-61617131 | None:intergenic |
| GTGGCGGTACTTCATTGGTT+AGG | 0.440696 | 1.1:-61617230 | None:intergenic |
| CCGGTTGCGGAACCTTCGTT+GGG | 0.448407 | 1.1:-61616838 | None:intergenic |
| GTACTGGTGGTTCAGGTAAC+CGG | 0.450368 | 1.1:+61617145 | MS.gene056062:CDS |
| CGGTCAAATGGTCAATTTCA+AGG | 0.454759 | 1.1:+61617165 | MS.gene056062:CDS |
| GATGAATACGGGAAATGAAA+TGG | 0.459560 | 1.1:+61617425 | MS.gene056062:CDS |
| GGTTCTTCATTATCATCGTT+AGG | 0.461785 | 1.1:-61616973 | None:intergenic |
| TGATGGCTCACGGTAACAAC+CGG | 0.471619 | 1.1:-61617327 | None:intergenic |
| AACTTGAACGTTCTTGGATG+TGG | 0.475224 | 1.1:-61616761 | None:intergenic |
| CACATGACATTACACGCATT+AGG | 0.475926 | 1.1:-61617537 | None:intergenic |
| ATCACATGCGCGTATTGATA+CGG | 0.476164 | 1.1:-61617405 | None:intergenic |
| CACAAACTGACCAACAAGAC+AGG | 0.483302 | 1.1:+61616568 | MS.gene056062:CDS |
| TTTCACCCACCACAGTACTA+TGG | 0.484299 | 1.1:+61617273 | MS.gene056062:CDS |
| GAAAACAACAACAACGGAAC+AGG | 0.484637 | 1.1:+61616724 | MS.gene056062:CDS |
| TACGTGTACGGCCTTGGCTG+AGG | 0.491015 | 1.1:-61617450 | None:intergenic |
| CTTGAAATTGACCATTTGAC+CGG | 0.491863 | 1.1:-61617164 | None:intergenic |
| AAAGTCTCCATTCACTGCGC+AGG | 0.492565 | 1.1:+61616269 | MS.gene056062:CDS |
| AGTGGTGTTACCAGCCAAAC+CGG | 0.494179 | 1.1:+61616915 | MS.gene056062:CDS |
| GGTTCAGGTAACCGGTCAAA+TGG | 0.494989 | 1.1:+61617153 | MS.gene056062:CDS |
| GCTAAAAGCGGCAACGGAAG+CGG | 0.527918 | 1.1:+61616796 | MS.gene056062:CDS |
| ATACGCGCATGTGATGAATA+CGG | 0.539599 | 1.1:+61617413 | MS.gene056062:CDS |
| TATCCTAGCAGCAGGAGTTA+CGG | 0.548387 | 1.1:+61617357 | MS.gene056062:CDS |
| TGAACACTTCCGTAATGCAC+CGG | 0.552209 | 1.1:+61617122 | MS.gene056062:CDS |
| GCAGCAGCAAAATGAGATTG+AGG | 0.556418 | 1.1:-61617300 | None:intergenic |
| ATACAGCGTATCCTAGCAGC+AGG | 0.556763 | 1.1:+61617349 | MS.gene056062:CDS |
| TACGCGCATGTGATGAATAC+GGG | 0.564097 | 1.1:+61617414 | MS.gene056062:CDS |
| TGCGCGTATTGATACGGTTG+TGG | 0.564403 | 1.1:-61617399 | None:intergenic |
| CCAACGAAGGTTCCGCAACC+GGG | 0.574607 | 1.1:+61616839 | MS.gene056062:CDS |
| GAACACTTCCGTAATGCACC+GGG | 0.574643 | 1.1:+61617123 | MS.gene056062:CDS |
| CCATTGACGAATGAGAAAAC+CGG | 0.578008 | 1.1:+61616994 | MS.gene056062:CDS |
| TGCTAGGATACGCTGTATGA+TGG | 0.586279 | 1.1:-61617344 | None:intergenic |
| AACACCGCTAAAAGCGGCAA+CGG | 0.586332 | 1.1:+61616790 | MS.gene056062:CDS |
| ACCGGTTCAACCGGTAACAC+AGG | 0.589012 | 1.1:+61617012 | MS.gene056062:CDS |
| GCACCGTAACTCCTGCTGCT+AGG | 0.592158 | 1.1:-61617360 | None:intergenic |
| TTACCTGAACCACCAGTACC+CGG | 0.601937 | 1.1:-61617141 | None:intergenic |
| CGTAATGCACCGGGTACTGG+TGG | 0.603532 | 1.1:+61617132 | MS.gene056062:CDS |
| TTCACAACATCTCAACTACA+AGG | 0.605083 | 1.1:+61616115 | MS.gene056062:CDS |
| ATGAAATGGAGCCTCAGCCA+AGG | 0.607085 | 1.1:+61617439 | MS.gene056062:CDS |
| AACGGCAACACCGCTAAAAG+CGG | 0.614579 | 1.1:+61616784 | MS.gene056062:CDS |
| AACAGTGAAAACAACAACAA+CGG | 0.621781 | 1.1:+61616718 | MS.gene056062:CDS |
| TTCAGCTTGTGTCTCTGATG+CGG | 0.631924 | 1.1:-61616087 | None:intergenic |
| AAAATTCTTCAAAACATACA+AGG | 0.632084 | 1.1:+61616311 | MS.gene056062:CDS |
| ACAAACTGACCAACAAGACA+GGG | 0.636532 | 1.1:+61616569 | MS.gene056062:CDS |
| GATTCTGGTTCATACGTGTA+CGG | 0.638610 | 1.1:-61617462 | None:intergenic |
| AAATAAACAAAAGAATCTGA+CGG | 0.643148 | 1.1:-61617501 | None:intergenic |
| ATACGCTGTATGATGGCTCA+CGG | 0.643410 | 1.1:-61617337 | None:intergenic |
| AACACAGGTGGTGATAGCAG+TGG | 0.653182 | 1.1:+61617027 | MS.gene056062:CDS |
| TGGCTCACGGTAACAACCGG+TGG | 0.659488 | 1.1:-61617324 | None:intergenic |
| GGAGGACCATAGTACTGTGG+TGG | 0.659974 | 1.1:-61617279 | None:intergenic |
| GCGTATTGATACGGTTGTGG+AGG | 0.666718 | 1.1:-61617396 | None:intergenic |
| CTCTTGAACATGTACCACGC+CGG | 0.671118 | 1.1:-61616866 | None:intergenic |
| GCAGCAAAATGAGATTGAGG+AGG | 0.681939 | 1.1:-61617297 | None:intergenic |
| CGCAACCGGGAAAACCGGCG+TGG | 0.690224 | 1.1:+61616852 | MS.gene056062:CDS |
| GGTTCAACCGGTAACACAGG+TGG | 0.694255 | 1.1:+61617015 | MS.gene056062:CDS |
| AGAGGTGAGAAAGCAAACAG+TGG | 0.698353 | 1.1:+61616897 | MS.gene056062:CDS |
| AAAGTTAACAAACCCAACGA+AGG | 0.699189 | 1.1:+61616826 | MS.gene056062:CDS |
| TGTTCAAGAGCTAAAGCCAG+AGG | 0.702356 | 1.1:+61616879 | MS.gene056062:CDS |
| TGTTCGTTAATGTAATGACG+TGG | 0.709464 | 1.1:-61617249 | None:intergenic |
| GAGGACCATAGTACTGTGGT+GGG | 0.719210 | 1.1:-61617278 | None:intergenic |
| TCGTTAATGTAATGACGTGG+CGG | 0.723759 | 1.1:-61617246 | None:intergenic |
| TGAGGAGGACCATAGTACTG+TGG | 0.730684 | 1.1:-61617282 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGAAAGTAAAAAATAA+AGG | - | chr1.1:61616370-61616389 | None:intergenic | 10.0% |
| !! | AAAATTCTTCAAAACATACA+AGG | + | chr1.1:61616311-61616330 | MS.gene056062:CDS | 20.0% |
| !! | AAATAAACAAAAGAATCTGA+CGG | - | chr1.1:61617504-61617523 | None:intergenic | 20.0% |
| !! | CAAAGAATGAATACTAAAAA+TGG | - | chr1.1:61616412-61616431 | None:intergenic | 20.0% |
| !! | TGAAAAAGAAGAAAAAGAAA+GGG | + | chr1.1:61617052-61617071 | MS.gene056062:CDS | 20.0% |
| !! | TTTAGTATTCATTCTTTGAA+GGG | + | chr1.1:61616414-61616433 | MS.gene056062:intron | 20.0% |
| !!! | TTTATACTTTTCTGTAATCT+AGG | + | chr1.1:61616469-61616488 | MS.gene056062:intron | 20.0% |
| !!! | TTTTAGTATTCATTCTTTGA+AGG | + | chr1.1:61616413-61616432 | MS.gene056062:intron | 20.0% |
| ! | AACAAAAAGTAATAGTAACG+GGG | + | chr1.1:61616521-61616540 | MS.gene056062:CDS | 25.0% |
| ! | AATGAAATGAAAGTAAGAGA+TGG | - | chr1.1:61616154-61616173 | None:intergenic | 25.0% |
| ! | CAACAAAAAGTAATAGTAAC+GGG | + | chr1.1:61616520-61616539 | MS.gene056062:CDS | 25.0% |
| ! | GCAACAAAAAGTAATAGTAA+CGG | + | chr1.1:61616519-61616538 | MS.gene056062:CDS | 25.0% |
| ! | GTGAAAAAGAAGAAAAAGAA+AGG | + | chr1.1:61617051-61617070 | MS.gene056062:CDS | 25.0% |
| !! | GTCAAAGTAGTAATTTTCAT+GGG | + | chr1.1:61617187-61617206 | MS.gene056062:CDS | 25.0% |
| !!! | TTCTTCTTTTTTGATTCTGT+TGG | - | chr1.1:61616619-61616638 | None:intergenic | 25.0% |
| AACAGTGAAAACAACAACAA+CGG | + | chr1.1:61616718-61616737 | MS.gene056062:CDS | 30.0% | |
| AAGAAGAAAAAGAAAGGGAA+AGG | + | chr1.1:61617057-61617076 | MS.gene056062:CDS | 30.0% | |
| TGTGATGAATTATACGATTC+TGG | - | chr1.1:61617480-61617499 | None:intergenic | 30.0% | |
| ! | GGTCAAAGTAGTAATTTTCA+TGG | + | chr1.1:61617186-61617205 | MS.gene056062:CDS | 30.0% |
| !!! | TTTTTTGATTCTGTTGGTTC+AGG | - | chr1.1:61616613-61616632 | None:intergenic | 30.0% |
| AAAGTTAACAAACCCAACGA+AGG | + | chr1.1:61616826-61616845 | MS.gene056062:CDS | 35.0% | |
| AACAAGTTTAGAAGCAGTTG+AGG | - | chr1.1:61616216-61616235 | None:intergenic | 35.0% | |
| CTTGAAATTGACCATTTGAC+CGG | - | chr1.1:61617167-61617186 | None:intergenic | 35.0% | |
| GATGAATACGGGAAATGAAA+TGG | + | chr1.1:61617425-61617444 | MS.gene056062:CDS | 35.0% | |
| GGTTCTTCATTATCATCGTT+AGG | - | chr1.1:61616976-61616995 | None:intergenic | 35.0% | |
| TGTTCGTTAATGTAATGACG+TGG | - | chr1.1:61617252-61617271 | None:intergenic | 35.0% | |
| TGTTTCTCTTTGTTCTTCTC+TGG | - | chr1.1:61616652-61616671 | None:intergenic | 35.0% | |
| TTCACAACATCTCAACTACA+AGG | + | chr1.1:61616115-61616134 | MS.gene056062:CDS | 35.0% | |
| ! | TCCAAGAACGTTCAAGTTAA+CGG | + | chr1.1:61616766-61616785 | MS.gene056062:CDS | 35.0% |
| !! | TCTTTGTTCTTCTCTGGTTT+TGG | - | chr1.1:61616646-61616665 | None:intergenic | 35.0% |
| AACTTGAACGTTCTTGGATG+TGG | - | chr1.1:61616764-61616783 | None:intergenic | 40.0% | |
| ACAAACTGACCAACAAGACA+GGG | + | chr1.1:61616569-61616588 | MS.gene056062:CDS | 40.0% | |
| ATACGCGCATGTGATGAATA+CGG | + | chr1.1:61617413-61617432 | MS.gene056062:CDS | 40.0% | |
| CACATGACATTACACGCATT+AGG | - | chr1.1:61617540-61617559 | None:intergenic | 40.0% | |
| CAGTTGTCTGAGAGACAAAA+TGG | - | chr1.1:61616244-61616263 | None:intergenic | 40.0% | |
| CCATTGACGAATGAGAAAAC+CGG | + | chr1.1:61616994-61617013 | MS.gene056062:CDS | 40.0% | |
| CGGTCAAATGGTCAATTTCA+AGG | + | chr1.1:61617165-61617184 | MS.gene056062:CDS | 40.0% | |
| GAAAACAACAACAACGGAAC+AGG | + | chr1.1:61616724-61616743 | MS.gene056062:CDS | 40.0% | |
| GCAGTTGAGGAAGAATAGTA+CGG | - | chr1.1:61616203-61616222 | None:intergenic | 40.0% | |
| TCGTTAATGTAATGACGTGG+CGG | - | chr1.1:61617249-61617268 | None:intergenic | 40.0% | |
| TTTCATGGGCAAGTACATTC+AGG | + | chr1.1:61617201-61617220 | MS.gene056062:CDS | 40.0% | |
| ! | AATGAGAAAACCGGTTCAAC+CGG | + | chr1.1:61617003-61617022 | MS.gene056062:CDS | 40.0% |
| ! | ATCACATGCGCGTATTGATA+CGG | - | chr1.1:61617408-61617427 | None:intergenic | 40.0% |
| ! | TACGGAAGAGTACGTTGTTA+GGG | - | chr1.1:61616185-61616204 | None:intergenic | 40.0% |
| !! | GATTCTGGTTCATACGTGTA+CGG | - | chr1.1:61617465-61617484 | None:intergenic | 40.0% |
| !!! | CTAACTTTTTTCTCGGCTAC+CGG | - | chr1.1:61616937-61616956 | None:intergenic | 40.0% |
| !!! | TGCGACGCTAACTTTTTTCT+CGG | - | chr1.1:61616944-61616963 | None:intergenic | 40.0% |
| AACATGCTTCCCTGTCTTGT+TGG | - | chr1.1:61616581-61616600 | None:intergenic | 45.0% | |
| ACTGTTTGCTTTCTCACCTC+TGG | - | chr1.1:61616898-61616917 | None:intergenic | 45.0% | |
| AGAGGTGAGAAAGCAAACAG+TGG | + | chr1.1:61616897-61616916 | MS.gene056062:CDS | 45.0% | |
| ATACGCTGTATGATGGCTCA+CGG | - | chr1.1:61617340-61617359 | None:intergenic | 45.0% | |
| CACAAACTGACCAACAAGAC+AGG | + | chr1.1:61616568-61616587 | MS.gene056062:CDS | 45.0% | |
| GCAGCAAAATGAGATTGAGG+AGG | - | chr1.1:61617300-61617319 | None:intergenic | 45.0% | |
| GCAGCAGCAAAATGAGATTG+AGG | - | chr1.1:61617303-61617322 | None:intergenic | 45.0% | |
| TACGCGCATGTGATGAATAC+GGG | + | chr1.1:61617414-61617433 | MS.gene056062:CDS | 45.0% | |
| TATCCTAGCAGCAGGAGTTA+CGG | + | chr1.1:61617357-61617376 | MS.gene056062:CDS | 45.0% | |
| TGAACACTTCCGTAATGCAC+CGG | + | chr1.1:61617122-61617141 | MS.gene056062:CDS | 45.0% | |
| TGCTAGGATACGCTGTATGA+TGG | - | chr1.1:61617347-61617366 | None:intergenic | 45.0% | |
| TGTTCAAGAGCTAAAGCCAG+AGG | + | chr1.1:61616879-61616898 | MS.gene056062:CDS | 45.0% | |
| TTCAGCTTGTGTCTCTGATG+CGG | - | chr1.1:61616090-61616109 | None:intergenic | 45.0% | |
| TTTCACCCACCACAGTACTA+TGG | + | chr1.1:61617273-61617292 | MS.gene056062:CDS | 45.0% | |
| ! | CCGGTTTTCTCATTCGTCAA+TGG | - | chr1.1:61616997-61617016 | None:intergenic | 45.0% |
| ! | CTGTCTTGTTGGTCAGTTTG+TGG | - | chr1.1:61616570-61616589 | None:intergenic | 45.0% |
| ! | GCCGTTAACTTGAACGTTCT+TGG | - | chr1.1:61616770-61616789 | None:intergenic | 45.0% |
| ! | GTACGGAAGAGTACGTTGTT+AGG | - | chr1.1:61616186-61616205 | None:intergenic | 45.0% |
| !!! | TTTTTTCTCGGCTACCGGTT+TGG | - | chr1.1:61616932-61616951 | None:intergenic | 45.0% |
| AAAGTCTCCATTCACTGCGC+AGG | + | chr1.1:61616269-61616288 | MS.gene056062:CDS | 50.0% | |
| AACACAGGTGGTGATAGCAG+TGG | + | chr1.1:61617027-61617046 | MS.gene056062:CDS | 50.0% | |
| AACACCGCTAAAAGCGGCAA+CGG | + | chr1.1:61616790-61616809 | MS.gene056062:CDS | 50.0% | |
| AACGGCAACACCGCTAAAAG+CGG | + | chr1.1:61616784-61616803 | MS.gene056062:CDS | 50.0% | |
| ATACAGCGTATCCTAGCAGC+AGG | + | chr1.1:61617349-61617368 | MS.gene056062:CDS | 50.0% | |
| ATGAAATGGAGCCTCAGCCA+AGG | + | chr1.1:61617439-61617458 | MS.gene056062:CDS | 50.0% | |
| ATGACGTGGCGGTACTTCAT+TGG | - | chr1.1:61617238-61617257 | None:intergenic | 50.0% | |
| CTCTTGAACATGTACCACGC+CGG | - | chr1.1:61616869-61616888 | None:intergenic | 50.0% | |
| GAACACTTCCGTAATGCACC+GGG | + | chr1.1:61617123-61617142 | MS.gene056062:CDS | 50.0% | |
| GAGGACCATAGTACTGTGGT+GGG | - | chr1.1:61617281-61617300 | None:intergenic | 50.0% | |
| GCTATCACCACCTGTGTTAC+CGG | - | chr1.1:61617025-61617044 | None:intergenic | 50.0% | |
| GGTTCAGGTAACCGGTCAAA+TGG | + | chr1.1:61617153-61617172 | MS.gene056062:CDS | 50.0% | |
| TGAGGAGGACCATAGTACTG+TGG | - | chr1.1:61617285-61617304 | None:intergenic | 50.0% | |
| TGATGGCTCACGGTAACAAC+CGG | - | chr1.1:61617330-61617349 | None:intergenic | 50.0% | |
| TTACCTGAACCACCAGTACC+CGG | - | chr1.1:61617144-61617163 | None:intergenic | 50.0% | |
| ! | ACCTGTGTTACCGGTTGAAC+CGG | - | chr1.1:61617016-61617035 | None:intergenic | 50.0% |
| ! | CAGGGAAGCATGTTGAGCTT+TGG | + | chr1.1:61616587-61616606 | MS.gene056062:CDS | 50.0% |
| ! | GCGTATTGATACGGTTGTGG+AGG | - | chr1.1:61617399-61617418 | None:intergenic | 50.0% |
| ! | GTACTGGTGGTTCAGGTAAC+CGG | + | chr1.1:61617145-61617164 | MS.gene056062:CDS | 50.0% |
| ! | GTGGCGGTACTTCATTGGTT+AGG | - | chr1.1:61617233-61617252 | None:intergenic | 50.0% |
| ! | TCATTTTGCTGCTGCTCCAC+CGG | + | chr1.1:61617308-61617327 | MS.gene056062:CDS | 50.0% |
| ! | TGCGCGTATTGATACGGTTG+TGG | - | chr1.1:61617402-61617421 | None:intergenic | 50.0% |
| !! | AGTGGTGTTACCAGCCAAAC+CGG | + | chr1.1:61616915-61616934 | MS.gene056062:CDS | 50.0% |
| CACCAGTACCCGGTGCATTA+CGG | - | chr1.1:61617134-61617153 | None:intergenic | 55.0% | |
| GCTAAAAGCGGCAACGGAAG+CGG | + | chr1.1:61616796-61616815 | MS.gene056062:CDS | 55.0% | |
| GGAGGACCATAGTACTGTGG+TGG | - | chr1.1:61617282-61617301 | None:intergenic | 55.0% | |
| GGTTCAACCGGTAACACAGG+TGG | + | chr1.1:61617015-61617034 | MS.gene056062:CDS | 55.0% | |
| GGTTCATACGTGTACGGCCT+TGG | - | chr1.1:61617459-61617478 | None:intergenic | 55.0% | |
| TTCCGTAATGCACCGGGTAC+TGG | + | chr1.1:61617129-61617148 | MS.gene056062:CDS | 55.0% | |
| ! | ACCGGTTCAACCGGTAACAC+AGG | + | chr1.1:61617012-61617031 | MS.gene056062:CDS | 55.0% |
| !!! | ATGTACCACGCCGGTTTTCC+CGG | - | chr1.1:61616860-61616879 | None:intergenic | 55.0% |
| !!! | GCTTCCGTTGCCGCTTTTAG+CGG | - | chr1.1:61616797-61616816 | None:intergenic | 55.0% |
| CCAACGAAGGTTCCGCAACC+GGG | + | chr1.1:61616839-61616858 | MS.gene056062:CDS | 60.0% | |
| CCCAACGAAGGTTCCGCAAC+CGG | + | chr1.1:61616838-61616857 | MS.gene056062:CDS | 60.0% | |
| CCGGTTGCGGAACCTTCGTT+GGG | - | chr1.1:61616841-61616860 | None:intergenic | 60.0% | |
| CTTGCAGCCTGCGCAGTGAA+TGG | - | chr1.1:61616279-61616298 | None:intergenic | 60.0% | |
| GCACCGTAACTCCTGCTGCT+AGG | - | chr1.1:61617363-61617382 | None:intergenic | 60.0% | |
| GGTTCCGCAACCGGGAAAAC+CGG | + | chr1.1:61616847-61616866 | MS.gene056062:CDS | 60.0% | |
| TACGTGTACGGCCTTGGCTG+AGG | - | chr1.1:61617453-61617472 | None:intergenic | 60.0% | |
| TGGCTCACGGTAACAACCGG+TGG | - | chr1.1:61617327-61617346 | None:intergenic | 60.0% | |
| !! | CGTAATGCACCGGGTACTGG+TGG | + | chr1.1:61617132-61617151 | MS.gene056062:CDS | 60.0% |
| !! | TTCTCGGCTACCGGTTTGGC+TGG | - | chr1.1:61616928-61616947 | None:intergenic | 60.0% |
| CCCGGTTGCGGAACCTTCGT+TGG | - | chr1.1:61616842-61616861 | None:intergenic | 65.0% | |
| !! | GCACCGGGTACTGGTGGTTC+AGG | + | chr1.1:61617138-61617157 | MS.gene056062:CDS | 65.0% |
| !!! | CACGCCGGTTTTCCCGGTTG+CGG | - | chr1.1:61616854-61616873 | None:intergenic | 65.0% |
| CGCAACCGGGAAAACCGGCG+TGG | + | chr1.1:61616852-61616871 | MS.gene056062:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 61616083 | 61617560 | 61616083 | ID=MS.gene056062 |
| chr1.1 | mRNA | 61616083 | 61617560 | 61616083 | ID=MS.gene056062.t1;Parent=MS.gene056062 |
| chr1.1 | exon | 61616083 | 61616136 | 61616083 | ID=MS.gene056062.t1.exon1;Parent=MS.gene056062.t1 |
| chr1.1 | CDS | 61616083 | 61616136 | 61616083 | ID=cds.MS.gene056062.t1;Parent=MS.gene056062.t1 |
| chr1.1 | exon | 61616257 | 61616332 | 61616257 | ID=MS.gene056062.t1.exon2;Parent=MS.gene056062.t1 |
| chr1.1 | CDS | 61616257 | 61616332 | 61616257 | ID=cds.MS.gene056062.t1;Parent=MS.gene056062.t1 |
| chr1.1 | exon | 61616491 | 61617560 | 61616491 | ID=MS.gene056062.t1.exon3;Parent=MS.gene056062.t1 |
| chr1.1 | CDS | 61616491 | 61617560 | 61616491 | ID=cds.MS.gene056062.t1;Parent=MS.gene056062.t1 |
| Gene Sequence |
| Protein sequence |
