Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44272.t1 | XP_003613090.1 | 98.1 | 534 | 9 | 1 | 1 | 534 | 1 | 533 | 2.70E-306 | 1060.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44272.t1 | Q8VYN6 | 78.3 | 512 | 109 | 2 | 24 | 534 | 27 | 537 | 1.4e-239 | 830.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44272.t1 | G7JXR3 | 98.1 | 534 | 9 | 1 | 1 | 534 | 1 | 533 | 1.9e-306 | 1060.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene44272 | MS.gene40242 | PPI |
| MS.gene44272 | MS.gene014596 | PPI |
| MS.gene44272 | MS.gene40737 | PPI |
| MS.gene44272 | MS.gene014594 | PPI |
| MS.gene44272 | MS.gene69076 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44272.t1 | MTR_5g032570 | 98.127 | 534 | 9 | 1 | 1 | 534 | 1 | 533 | 0.0 | 1087 |
| MS.gene44272.t1 | MTR_8g069040 | 79.661 | 531 | 101 | 2 | 6 | 534 | 4 | 529 | 0.0 | 876 |
| MS.gene44272.t1 | MTR_1g090300 | 47.380 | 458 | 208 | 7 | 83 | 534 | 90 | 520 | 7.58e-135 | 402 |
| MS.gene44272.t1 | MTR_3g110395 | 52.770 | 379 | 171 | 4 | 162 | 534 | 78 | 454 | 2.04e-134 | 400 |
| MS.gene44272.t1 | MTR_6g090130 | 52.507 | 379 | 172 | 4 | 162 | 534 | 74 | 450 | 9.08e-134 | 398 |
| MS.gene44272.t1 | MTR_8g102190 | 51.842 | 380 | 174 | 4 | 162 | 534 | 77 | 454 | 7.40e-132 | 392 |
| MS.gene44272.t1 | MTR_2g100710 | 44.880 | 459 | 218 | 6 | 83 | 534 | 23 | 453 | 2.90e-129 | 385 |
| MS.gene44272.t1 | MTR_4g134290 | 45.238 | 378 | 200 | 3 | 164 | 534 | 81 | 458 | 3.39e-115 | 349 |
| MS.gene44272.t1 | MTR_8g102190 | 52.174 | 299 | 134 | 4 | 162 | 453 | 77 | 373 | 2.13e-99 | 305 |
| MS.gene44272.t1 | MTR_8g102190 | 53.191 | 282 | 124 | 3 | 163 | 438 | 78 | 357 | 5.88e-96 | 296 |
| MS.gene44272.t1 | MTR_2g100710 | 44.628 | 363 | 166 | 7 | 83 | 438 | 23 | 357 | 1.98e-94 | 293 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44272.t1 | AT2G22480 | 78.320 | 512 | 109 | 2 | 24 | 534 | 27 | 537 | 0.0 | 835 |
| MS.gene44272.t1 | AT5G56630 | 53.050 | 377 | 171 | 3 | 162 | 534 | 77 | 451 | 8.77e-137 | 405 |
| MS.gene44272.t1 | AT4G26270 | 53.018 | 381 | 166 | 5 | 162 | 534 | 77 | 452 | 1.73e-134 | 399 |
| MS.gene44272.t1 | AT4G32840 | 52.660 | 376 | 173 | 4 | 162 | 534 | 78 | 451 | 2.02e-133 | 395 |
| MS.gene44272.t1 | AT4G29220 | 45.969 | 459 | 212 | 7 | 83 | 534 | 24 | 453 | 7.72e-133 | 394 |
| MS.gene44272.t1 | AT5G61580 | 51.715 | 379 | 175 | 4 | 162 | 534 | 128 | 504 | 4.47e-131 | 392 |
| MS.gene44272.t1 | AT5G61580 | 52.231 | 381 | 169 | 6 | 162 | 534 | 128 | 503 | 4.11e-130 | 389 |
| MS.gene44272.t1 | AT5G47810 | 44.498 | 418 | 208 | 6 | 125 | 533 | 36 | 438 | 2.00e-116 | 352 |
Find 125 sgRNAs with CRISPR-Local
Find 321 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGCTGCCTTTACTTCTTC+TGG | 0.234836 | 5.4:+22801516 | None:intergenic |
| CTCTCAGGTGGCAGCCTATT+AGG | 0.270534 | 5.4:-22800901 | MS.gene44272:CDS |
| GAGATTGTTGGTATTCCTTT+TGG | 0.274193 | 5.4:-22801109 | MS.gene44272:CDS |
| ACTTACATACCTCGGGAATT+AGG | 0.276615 | 5.4:+22800097 | None:intergenic |
| AATCGGGATTGTGAAATTAA+TGG | 0.277060 | 5.4:-22800181 | MS.gene44272:CDS |
| CCATGGAAGTCTCTAGTTAT+AGG | 0.279905 | 5.4:+22803017 | None:intergenic |
| GAAGGGTGGTGGTGAGGTTA+GGG | 0.290525 | 5.4:+22803826 | None:intergenic |
| CTGATCCCTTTGATTCTATA+AGG | 0.291613 | 5.4:+22799952 | None:intergenic |
| CTATTGATGGACAAAACTTT+TGG | 0.291628 | 5.4:-22800374 | MS.gene44272:CDS |
| CAGGTTCATGGTGCATTTGC+TGG | 0.297347 | 5.4:-22798146 | MS.gene44272:CDS |
| CGGATCAAAGTGTGTGTTAT+AGG | 0.297464 | 5.4:-22800425 | MS.gene44272:CDS |
| GAAGAGACGATGGTTGGTTT+TGG | 0.310529 | 5.4:+22803746 | None:intergenic |
| GCATTGATCCTGGCTGTAAT+TGG | 0.311570 | 5.4:-22801870 | MS.gene44272:CDS |
| ACTAATGATACCGATGCTTC+AGG | 0.313533 | 5.4:-22799742 | MS.gene44272:CDS |
| TGGTGAAATTGTGGATAGTT+TGG | 0.317669 | 5.4:-22800854 | MS.gene44272:CDS |
| CGATGCCACATTCGACTGTT+TGG | 0.331058 | 5.4:+22798035 | None:intergenic |
| TGAAGGGTGGTGGTGAGGTT+AGG | 0.342291 | 5.4:+22803825 | None:intergenic |
| TTCCATGGGAATTATGATTC+TGG | 0.345307 | 5.4:-22803002 | MS.gene44272:CDS |
| TGCGATATTACTTCGGTGAT+TGG | 0.351808 | 5.4:+22798074 | None:intergenic |
| GCTTTGGTATTACAGGTTCA+TGG | 0.359023 | 5.4:-22798158 | MS.gene44272:intron |
| GTAATCACACTTGAAATATA+TGG | 0.362471 | 5.4:-22801139 | MS.gene44272:CDS |
| CTCTTTGTGTTGGGTGGAAA+TGG | 0.365286 | 5.4:-22800668 | MS.gene44272:CDS |
| GGCGCTCAGTGCATTGATCC+TGG | 0.376773 | 5.4:-22801880 | MS.gene44272:CDS |
| TTAAACTTATCTTTCCAATC+AGG | 0.379826 | 5.4:+22803648 | None:intergenic |
| TTGATTACAATGATCCTGAT+TGG | 0.380703 | 5.4:-22803662 | MS.gene44272:CDS |
| AGACAATGATATTCTATTGA+TGG | 0.383675 | 5.4:-22800387 | MS.gene44272:CDS |
| AATGCTAAACTTGGAGATAT+CGG | 0.387969 | 5.4:-22799718 | MS.gene44272:CDS |
| TTGATCCAACATACATGATT+CGG | 0.395697 | 5.4:-22799245 | MS.gene44272:CDS |
| AGTAATATCGCATCCTCAAT+TGG | 0.405969 | 5.4:-22798063 | MS.gene44272:CDS |
| CTCCGCGTGAAACTCCTAAT+AGG | 0.411712 | 5.4:+22800887 | None:intergenic |
| ATCAACATGCTCTTTGTGTT+GGG | 0.422869 | 5.4:-22800677 | MS.gene44272:CDS |
| AATAATAGCAAACCTCTTGT+TGG | 0.426233 | 5.4:+22799686 | None:intergenic |
| ATGCTAAACTTGGAGATATC+GGG | 0.438212 | 5.4:-22799717 | MS.gene44272:CDS |
| ATCGGGATTGTGAAATTAAT+GGG | 0.439443 | 5.4:-22800180 | MS.gene44272:CDS |
| TGATCCAACATACATGATTC+GGG | 0.446659 | 5.4:-22799244 | MS.gene44272:CDS |
| CTAATGATACCGATGCTTCA+GGG | 0.449759 | 5.4:-22799741 | MS.gene44272:CDS |
| TCAAATGAAGTCGGGTTGAC+CGG | 0.450420 | 5.4:+22797998 | None:intergenic |
| TGTTAGAGACTTTGAATGAA+TGG | 0.455225 | 5.4:+22803724 | None:intergenic |
| CATAGTGCATATCACGGAAT+CGG | 0.458640 | 5.4:-22800198 | MS.gene44272:CDS |
| CTGTTTGGATCCACCAATTG+AGG | 0.462985 | 5.4:+22798050 | None:intergenic |
| GAACGCATAGAAGAAGCATC+AGG | 0.466750 | 5.4:+22803576 | None:intergenic |
| CATTGATCCTGGCTGTAATT+GGG | 0.472888 | 5.4:-22801869 | MS.gene44272:CDS |
| ACTTGTGGAGGACTGTGTCC+TGG | 0.474252 | 5.4:-22801489 | MS.gene44272:CDS |
| GAAAATAATCAAATGAAGTC+GGG | 0.476259 | 5.4:+22797990 | None:intergenic |
| AAGGTTCCTTTCAATTTACA+TGG | 0.477045 | 5.4:-22800005 | MS.gene44272:CDS |
| AATAAATTCTGCATATATAG+AGG | 0.477305 | 5.4:-22800318 | MS.gene44272:intron |
| GGAGTTTCACGCGGAGGACC+TGG | 0.478048 | 5.4:-22800880 | MS.gene44272:CDS |
| TTCAATTTACATGGACCTCA+TGG | 0.479511 | 5.4:-22799996 | MS.gene44272:CDS |
| CAAGTACCTTATAGAATCAA+AGG | 0.480379 | 5.4:-22799958 | MS.gene44272:CDS |
| GGTGCATTTGCTGGATATAG+TGG | 0.480453 | 5.4:-22798137 | MS.gene44272:CDS |
| GATCAACATGCTCTTTGTGT+TGG | 0.483619 | 5.4:-22800678 | MS.gene44272:CDS |
| GTTTGTGTGGCAGAGGGAGC+AGG | 0.484756 | 5.4:-22799924 | MS.gene44272:CDS |
| TGTGGCAGAGGGAGCAGGAC+AGG | 0.492036 | 5.4:-22799919 | MS.gene44272:intron |
| GTTGATTGATTGCAGGAAAG+AGG | 0.494138 | 5.4:-22800701 | MS.gene44272:intron |
| GTTCAAAACATTCATCTCTC+AGG | 0.497136 | 5.4:-22800916 | MS.gene44272:CDS |
| CAAAGAGTTGATGGAAATAC+CGG | 0.500018 | 5.4:-22801068 | MS.gene44272:intron |
| TCTTAACGATGTCATTAGAC+AGG | 0.502961 | 5.4:-22801466 | MS.gene44272:intron |
| CTTCAAACCAGAAGAAGTAA+AGG | 0.503634 | 5.4:-22801523 | MS.gene44272:CDS |
| ATAGTGCATATCACGGAATC+GGG | 0.505089 | 5.4:-22800197 | MS.gene44272:CDS |
| AGAAAATAATCAAATGAAGT+CGG | 0.506105 | 5.4:+22797989 | None:intergenic |
| TAATGACAGAGTGCTTCTTA+AGG | 0.510674 | 5.4:-22802952 | MS.gene44272:intron |
| TGAAATTGTGGATAGTTTGG+AGG | 0.518056 | 5.4:-22800851 | MS.gene44272:intron |
| ATCAATCTGTCCACTAGCTA+AGG | 0.518760 | 5.4:+22800125 | None:intergenic |
| AGCTGTAGTTTGTGTGGCAG+AGG | 0.521624 | 5.4:-22799931 | MS.gene44272:CDS |
| TTGATTCTATAAGGTACTTG+AGG | 0.522219 | 5.4:+22799961 | None:intergenic |
| GCTTCAGGGAATGCTAAACT+TGG | 0.524252 | 5.4:-22799727 | MS.gene44272:CDS |
| TTGATTGATTGCAGGAAAGA+GGG | 0.531805 | 5.4:-22800700 | MS.gene44272:intron |
| ATTATGATTCTGGTGAGGAA+TGG | 0.538440 | 5.4:-22802992 | MS.gene44272:CDS |
| CATTCATCACCTACATCTGC+TGG | 0.539977 | 5.4:-22801901 | MS.gene44272:CDS |
| CAGCAGATGTAGGTGATGAA+TGG | 0.540591 | 5.4:+22801902 | None:intergenic |
| AAATTAATGGGCCGTAGCAG+TGG | 0.542200 | 5.4:-22800168 | MS.gene44272:CDS |
| AAGGCAGCCATTGTTACTTG+TGG | 0.549028 | 5.4:-22801504 | MS.gene44272:CDS |
| AACATGCTCTTTGTGTTGGG+TGG | 0.552403 | 5.4:-22800674 | MS.gene44272:CDS |
| CACCAGAATCATAATTCCCA+TGG | 0.554608 | 5.4:+22803000 | None:intergenic |
| GGTGGAAATGGTACACATGC+TGG | 0.556073 | 5.4:-22800656 | MS.gene44272:CDS |
| GATTTCATTTACAGCTGTCA+AGG | 0.558373 | 5.4:-22800945 | MS.gene44272:intron |
| TGAGGTCCATGTAAATTGAA+AGG | 0.559778 | 5.4:+22799999 | None:intergenic |
| CATGCCCGAATCATGTATGT+TGG | 0.561157 | 5.4:+22799240 | None:intergenic |
| GGATATAGTGGCATTACAGT+AGG | 0.561938 | 5.4:-22798125 | MS.gene44272:CDS |
| AAGTACCTTATAGAATCAAA+GGG | 0.565661 | 5.4:-22799957 | MS.gene44272:CDS |
| GCAGCCATTGTTACTTGTGG+AGG | 0.566120 | 5.4:-22801501 | MS.gene44272:CDS |
| ACCTGGAGTTGGTGAAATTG+TGG | 0.569663 | 5.4:-22800863 | MS.gene44272:CDS |
| TTTAGCATTCCCTGAAGCAT+CGG | 0.571949 | 5.4:+22799732 | None:intergenic |
| TGTTCCACCCAATTACAGCC+AGG | 0.572176 | 5.4:+22801862 | None:intergenic |
| CACTGTTCTTGGACAAAATG+CGG | 0.573505 | 5.4:-22799187 | MS.gene44272:intron |
| AAGGGTGGTGGTGAGGTTAG+GGG | 0.573747 | 5.4:+22803827 | None:intergenic |
| CACTGAGCGCCAGCAGATGT+AGG | 0.576254 | 5.4:+22801892 | None:intergenic |
| CGGGGTTTATATCCAACAAG+AGG | 0.576795 | 5.4:-22799698 | MS.gene44272:intron |
| ATGCAATCATCCTTAGCTAG+TGG | 0.577715 | 5.4:-22800135 | MS.gene44272:CDS |
| TTGCTATGAATCCACTGCTA+CGG | 0.580298 | 5.4:+22800157 | None:intergenic |
| TGTCGAGCAAATGCATCAGA+TGG | 0.581648 | 5.4:-22799219 | MS.gene44272:CDS |
| TCCACAATTTCACCAACTCC+AGG | 0.585983 | 5.4:+22800862 | None:intergenic |
| TCACGCGGAGGACCTGGAGT+TGG | 0.586696 | 5.4:-22800874 | MS.gene44272:CDS |
| CATCGATGCTTAACTTCGAC+CGG | 0.587899 | 5.4:-22798017 | MS.gene44272:CDS |
| TATGGTGTAACTGAGATTGT+TGG | 0.587899 | 5.4:-22801121 | MS.gene44272:CDS |
| GGGAAAATATCAGTAACATG+AGG | 0.589366 | 5.4:+22803597 | None:intergenic |
| GGGTTCATCGAGCTGGACCT+CGG | 0.593410 | 5.4:-22801557 | MS.gene44272:CDS |
| CCTATAACTAGAGACTTCCA+TGG | 0.595568 | 5.4:-22803017 | MS.gene44272:CDS |
| GGAAAATATCAGTAACATGA+GGG | 0.596785 | 5.4:+22803598 | None:intergenic |
| TTGAGGATGCGATATTACTT+CGG | 0.597150 | 5.4:+22798067 | None:intergenic |
| GCTGTAGTTTGTGTGGCAGA+GGG | 0.603354 | 5.4:-22799930 | MS.gene44272:CDS |
| TGAATGGAAGAGACGATGGT+TGG | 0.610640 | 5.4:+22803740 | None:intergenic |
| CTAATGACATCGTTAAGACC+AGG | 0.614698 | 5.4:+22801471 | None:intergenic |
| TGCTAAACTTGGAGATATCG+GGG | 0.616169 | 5.4:-22799716 | MS.gene44272:CDS |
| TCTCTGTGCTTCTTCAACCG+CGG | 0.616533 | 5.4:+22800343 | None:intergenic |
| GATTCTGGTGAGGAATGGAA+TGG | 0.617100 | 5.4:-22802987 | MS.gene44272:CDS |
| ATGATGATGATGAAGGGTGG+TGG | 0.617904 | 5.4:+22803815 | None:intergenic |
| GGGATCAGCTGTAGTTTGTG+TGG | 0.624112 | 5.4:-22799937 | MS.gene44272:CDS |
| CAGTCCTCCACAAGTAACAA+TGG | 0.624369 | 5.4:+22801497 | None:intergenic |
| GCTGTAATTGGGTGGAACAA+TGG | 0.626331 | 5.4:-22801858 | MS.gene44272:intron |
| CAAAACATTCATCTCTCAGG+TGG | 0.633928 | 5.4:-22800913 | MS.gene44272:CDS |
| AATATCGCATCCTCAATTGG+TGG | 0.636705 | 5.4:-22798060 | MS.gene44272:CDS |
| GATGATGAAGGGTGGTGGTG+AGG | 0.637750 | 5.4:+22803820 | None:intergenic |
| TGATCCTGGCTGTAATTGGG+TGG | 0.639090 | 5.4:-22801866 | MS.gene44272:CDS |
| TGGATCCAAACAGTCGAATG+TGG | 0.644484 | 5.4:-22798040 | MS.gene44272:CDS |
| AACGCATAGAAGAAGCATCA+GGG | 0.646346 | 5.4:+22803577 | None:intergenic |
| TAGGCGCATAGTGCATATCA+CGG | 0.649368 | 5.4:-22800204 | MS.gene44272:CDS |
| CTATAACTAGAGACTTCCAT+GGG | 0.651939 | 5.4:-22803016 | MS.gene44272:CDS |
| TGATGTATGCCTAATTCCCG+AGG | 0.666643 | 5.4:-22800106 | MS.gene44272:intron |
| AGGTGACTCAAAACTCCATG+AGG | 0.677996 | 5.4:+22799981 | None:intergenic |
| TGGGAATTATGATTCTGGTG+AGG | 0.678389 | 5.4:-22802997 | MS.gene44272:CDS |
| TGAATGAATGGAAGAGACGA+TGG | 0.679469 | 5.4:+22803736 | None:intergenic |
| CTATTAGGAGTTTCACGCGG+AGG | 0.683751 | 5.4:-22800886 | MS.gene44272:CDS |
| TGCAAATGCAATTCACGACG+AGG | 0.685123 | 5.4:-22800633 | MS.gene44272:intron |
| AGCCTATTAGGAGTTTCACG+CGG | 0.736304 | 5.4:-22800889 | MS.gene44272:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACATATAAAATAAAAATCA+CGG | + | chr5.4:22801119-22801138 | None:intergenic | 10.0% |
| !! | TTCAATAATATTTACATATA+TGG | + | chr5.4:22803114-22803133 | None:intergenic | 10.0% |
| !!! | AAAAATTCTGAAATTTTTTT+AGG | - | chr5.4:22800266-22800285 | MS.gene44272:intron | 10.0% |
| !!! | AAAATTCTGAAATTTTTTTA+GGG | - | chr5.4:22800267-22800286 | MS.gene44272:intron | 10.0% |
| !!! | AAACTAAAGTATATTTTTTT+AGG | + | chr5.4:22798647-22798666 | None:intergenic | 10.0% |
| !!! | TTTAGTTTAAAAAAATAACA+CGG | - | chr5.4:22798659-22798678 | MS.gene44272:intron | 10.0% |
| !! | AAATGCAATTAACTAATATA+AGG | + | chr5.4:22801253-22801272 | None:intergenic | 15.0% |
| !! | AATCAATTTCATTAATAGAA+TGG | + | chr5.4:22801031-22801050 | None:intergenic | 15.0% |
| !! | AATGCAATTAACTAATATAA+GGG | + | chr5.4:22801252-22801271 | None:intergenic | 15.0% |
| !! | ATTAAATAGAAAACAATACT+GGG | + | chr5.4:22801584-22801603 | None:intergenic | 15.0% |
| !! | TATTAAATAGAAAACAATAC+TGG | + | chr5.4:22801585-22801604 | None:intergenic | 15.0% |
| !!! | TATATTTTTTTAGGCAAATA+GGG | + | chr5.4:22798638-22798657 | None:intergenic | 15.0% |
| !!! | TATGATTTCACTTTTATTAT+TGG | - | chr5.4:22802724-22802743 | MS.gene44272:intron | 15.0% |
| !! | AAATAATATATAGCTAGAAG+TGG | + | chr5.4:22802997-22803016 | None:intergenic | 20.0% |
| !! | AATAAATTCTGCATATATAG+AGG | - | chr5.4:22801526-22801545 | MS.gene44272:CDS | 20.0% |
| !! | AGTTTATGCTTTATAAGATT+GGG | - | chr5.4:22803280-22803299 | MS.gene44272:intron | 20.0% |
| !! | ATAGAACCATTAAAACAAAA+AGG | + | chr5.4:22798610-22798629 | None:intergenic | 20.0% |
| !! | ATCATACATATATACAACAA+TGG | + | chr5.4:22802710-22802729 | None:intergenic | 20.0% |
| !! | ATTATAAGGATGAAAAATGT+AGG | - | chr5.4:22803030-22803049 | MS.gene44272:intron | 20.0% |
| !! | TAGTTTATGCTTTATAAGAT+TGG | - | chr5.4:22803279-22803298 | MS.gene44272:intron | 20.0% |
| !! | TCATACATATATACAACAAT+GGG | + | chr5.4:22802709-22802728 | None:intergenic | 20.0% |
| !! | TGAATATTTACAATAAACTG+TGG | - | chr5.4:22803144-22803163 | MS.gene44272:intron | 20.0% |
| !! | TTGTAATCTATGATTTCTTA+AGG | - | chr5.4:22801285-22801304 | MS.gene44272:intron | 20.0% |
| !!! | AAATCTCTTTCAAAAGTTTT+TGG | - | chr5.4:22800485-22800504 | MS.gene44272:intron | 20.0% |
| !!! | AACTATTGTTCATAATTTTC+CGG | + | chr5.4:22800133-22800152 | None:intergenic | 20.0% |
| !!! | AAGTTTTTTTAGTAGTTTCT+GGG | - | chr5.4:22800552-22800571 | MS.gene44272:intron | 20.0% |
| !!! | ACATCTTAAACAATTTTACA+TGG | + | chr5.4:22798410-22798429 | None:intergenic | 20.0% |
| !!! | ACATTTTTCATCCTTATAAT+TGG | + | chr5.4:22803030-22803049 | None:intergenic | 20.0% |
| !!! | ATATCATTGTCTATAGTTTT+CGG | + | chr5.4:22801449-22801468 | None:intergenic | 20.0% |
| !!! | CATTTTTCATCCTTATAATT+GGG | + | chr5.4:22803029-22803048 | None:intergenic | 20.0% |
| !!! | CTGATGAATGATATATTTTT+CGG | + | chr5.4:22802021-22802040 | None:intergenic | 20.0% |
| !!! | GTATATTTTTTTAGGCAAAT+AGG | + | chr5.4:22798639-22798658 | None:intergenic | 20.0% |
| !!! | TAAGTTTAAAGAAGATTTTG+AGG | - | chr5.4:22798210-22798229 | MS.gene44272:intron | 20.0% |
| !!! | TAAGTTTTTTTAGTAGTTTC+TGG | - | chr5.4:22800551-22800570 | MS.gene44272:intron | 20.0% |
| !!! | TAGATATTGGATATTGTTTT+AGG | - | chr5.4:22799185-22799204 | MS.gene44272:intron | 20.0% |
| !!! | TTGTGTTTATTTATTTTGTG+TGG | - | chr5.4:22803334-22803353 | MS.gene44272:intron | 20.0% |
| !!! | TTTGTAATTCTTTTCATAGT+TGG | - | chr5.4:22798313-22798332 | MS.gene44272:intron | 20.0% |
| !!! | TTTTTCGGAAAAAAAAATTC+AGG | + | chr5.4:22802006-22802025 | None:intergenic | 20.0% |
| ! | AAGTACCTTATAGAATCAAA+GGG | - | chr5.4:22801887-22801906 | MS.gene44272:CDS | 25.0% |
| ! | AGACAAATATTACTTCTGTA+TGG | + | chr5.4:22801057-22801076 | None:intergenic | 25.0% |
| ! | AGACAATGATATTCTATTGA+TGG | - | chr5.4:22801457-22801476 | MS.gene44272:intron | 25.0% |
| ! | ATATCTAGTTGTTGGAAATT+CGG | - | chr5.4:22803422-22803441 | MS.gene44272:intron | 25.0% |
| ! | CAACTTGTGTTTAAATACTA+CGG | + | chr5.4:22803472-22803491 | None:intergenic | 25.0% |
| ! | GGTTGAAACTTAATGAAAAT+TGG | - | chr5.4:22802210-22802229 | MS.gene44272:intron | 25.0% |
| ! | GTAATCACACTTGAAATATA+TGG | - | chr5.4:22800705-22800724 | MS.gene44272:intron | 25.0% |
| ! | GTGCTTACAATAATGTAAAT+GGG | - | chr5.4:22802189-22802208 | MS.gene44272:intron | 25.0% |
| ! | GTTTGATACTTCATCTATAT+AGG | + | chr5.4:22802255-22802274 | None:intergenic | 25.0% |
| ! | TCAGACGAAAAATTATTTCA+AGG | - | chr5.4:22802546-22802565 | MS.gene44272:intron | 25.0% |
| ! | TCGAATAGATAAATTGATAC+AGG | - | chr5.4:22801800-22801819 | MS.gene44272:intron | 25.0% |
| ! | TTAAAACATTTGTTCGTTCT+TGG | - | chr5.4:22799699-22799718 | MS.gene44272:CDS | 25.0% |
| ! | TTAAACTTATCTTTCCAATC+AGG | + | chr5.4:22798199-22798218 | None:intergenic | 25.0% |
| ! | TTACAATAAACTGTGGTAAA+TGG | - | chr5.4:22803151-22803170 | MS.gene44272:intron | 25.0% |
| ! | TTATACTTCACCCAATTATA+AGG | - | chr5.4:22803016-22803035 | MS.gene44272:CDS | 25.0% |
| !! | AATTCATTGTTGTTAAATGG+CGG | + | chr5.4:22799129-22799148 | None:intergenic | 25.0% |
| !! | CTTTTAACAGAAGTAAAACT+AGG | + | chr5.4:22802438-22802457 | None:intergenic | 25.0% |
| !! | GTATCTATATCGATGATTTT+TGG | + | chr5.4:22799002-22799021 | None:intergenic | 25.0% |
| !! | GTCAATTCATTGTTGTTAAA+TGG | + | chr5.4:22799132-22799151 | None:intergenic | 25.0% |
| !! | TAGATGCTATTTAACAACTT+TGG | + | chr5.4:22802817-22802836 | None:intergenic | 25.0% |
| !! | TCTTAAGGAAATCATCTTTT+TGG | - | chr5.4:22801300-22801319 | MS.gene44272:intron | 25.0% |
| !! | TTAAGGTAGTTTGCATTATT+TGG | - | chr5.4:22798909-22798928 | MS.gene44272:intron | 25.0% |
| !! | TTGAAGTATATATTTTTCCG+AGG | + | chr5.4:22800307-22800326 | None:intergenic | 25.0% |
| !! | TTTTTAACAGCTGAAACAAA+CGG | + | chr5.4:22800467-22800486 | None:intergenic | 25.0% |
| !!! | AACTTTTAACTTACATACCT+CGG | + | chr5.4:22801758-22801777 | None:intergenic | 25.0% |
| !!! | AATCATATTAGTCTTCTTTG+TGG | - | chr5.4:22799298-22799317 | MS.gene44272:intron | 25.0% |
| !!! | AGTTTTTTTAGTAGTTTCTG+GGG | - | chr5.4:22800553-22800572 | MS.gene44272:intron | 25.0% |
| !!! | ATATTGGATATTGTTTTAGG+TGG | - | chr5.4:22799188-22799207 | MS.gene44272:CDS | 25.0% |
| !!! | GAATCAATTGTTGTTTAGAA+GGG | + | chr5.4:22800815-22800834 | None:intergenic | 25.0% |
| !!! | GATCTTCCTTTTTGTTTTAA+TGG | - | chr5.4:22798601-22798620 | MS.gene44272:intron | 25.0% |
| !!! | GATGGTGATTTTAATATTCT+TGG | - | chr5.4:22802311-22802330 | MS.gene44272:intron | 25.0% |
| !!! | GATTGTAATTTGTTGATGTT+TGG | - | chr5.4:22798744-22798763 | MS.gene44272:intron | 25.0% |
| !!! | TGTTATTCGATATTGATTCT+CGG | - | chr5.4:22803664-22803683 | MS.gene44272:CDS | 25.0% |
| AAACAGAAGATTCCAACTTA+AGG | + | chr5.4:22799443-22799462 | None:intergenic | 30.0% | |
| AAGGTTCCTTTCAATTTACA+TGG | - | chr5.4:22801839-22801858 | MS.gene44272:intron | 30.0% | |
| AATAATAGCAAACCTCTTGT+TGG | + | chr5.4:22802161-22802180 | None:intergenic | 30.0% | |
| AATCGGGATTGTGAAATTAA+TGG | - | chr5.4:22801663-22801682 | MS.gene44272:intron | 30.0% | |
| AATGCTAAACTTGGAGATAT+CGG | - | chr5.4:22802126-22802145 | MS.gene44272:intron | 30.0% | |
| AGACATAGCATGATTTACAA+GGG | + | chr5.4:22803206-22803225 | None:intergenic | 30.0% | |
| ATCGGGATTGTGAAATTAAT+GGG | - | chr5.4:22801664-22801683 | MS.gene44272:intron | 30.0% | |
| ATTCCTTCACAAATTTCCTA+TGG | - | chr5.4:22799055-22799074 | MS.gene44272:intron | 30.0% | |
| ATTTAGAGATGAACATTCTC+CGG | - | chr5.4:22800111-22800130 | MS.gene44272:CDS | 30.0% | |
| CAAGTACCTTATAGAATCAA+AGG | - | chr5.4:22801886-22801905 | MS.gene44272:CDS | 30.0% | |
| CGATTATTTATTACCCGAAA+CGG | + | chr5.4:22799408-22799427 | None:intergenic | 30.0% | |
| CTAAAGAAACGTTCCAAATA+CGG | + | chr5.4:22798505-22798524 | None:intergenic | 30.0% | |
| GAATTTCCAACAACTAGATA+TGG | + | chr5.4:22803423-22803442 | None:intergenic | 30.0% | |
| GACGTTAACGAATATATTTG+AGG | + | chr5.4:22800613-22800632 | None:intergenic | 30.0% | |
| GCTGTTGTTAATGTAGATAT+TGG | - | chr5.4:22799172-22799191 | MS.gene44272:intron | 30.0% | |
| GGAAAATATCAGTAACATGA+GGG | + | chr5.4:22798249-22798268 | None:intergenic | 30.0% | |
| GGTGCTTACAATAATGTAAA+TGG | - | chr5.4:22802188-22802207 | MS.gene44272:intron | 30.0% | |
| TAATTCTAGACATCTTACAG+TGG | + | chr5.4:22802277-22802296 | None:intergenic | 30.0% | |
| TACAAAATGTTGTCAAGTAG+TGG | - | chr5.4:22799597-22799616 | MS.gene44272:intron | 30.0% | |
| TAGACATAGCATGATTTACA+AGG | + | chr5.4:22803207-22803226 | None:intergenic | 30.0% | |
| TATGCTTTATAAGATTGGGA+GGG | - | chr5.4:22803284-22803303 | MS.gene44272:intron | 30.0% | |
| TGTTAGAGACTTTGAATGAA+TGG | + | chr5.4:22798123-22798142 | None:intergenic | 30.0% | |
| TTAAATACCAGACTGACATT+AGG | + | chr5.4:22800028-22800047 | None:intergenic | 30.0% | |
| TTATGCTTTATAAGATTGGG+AGG | - | chr5.4:22803283-22803302 | MS.gene44272:intron | 30.0% | |
| TTGATCCAACATACATGATT+CGG | - | chr5.4:22802599-22802618 | MS.gene44272:intron | 30.0% | |
| TTGATTACAATGATCCTGAT+TGG | - | chr5.4:22798182-22798201 | MS.gene44272:intron | 30.0% | |
| TTGTACTAAATAGCGTAACA+TGG | + | chr5.4:22802874-22802893 | None:intergenic | 30.0% | |
| ! | AATCTTTTACCCGTCTTAAT+AGG | - | chr5.4:22801621-22801640 | MS.gene44272:intron | 30.0% |
| ! | ATGATGATGATGATGATGAA+GGG | + | chr5.4:22798038-22798057 | None:intergenic | 30.0% |
| ! | ATTGGTTCTCAATTCTCATA+TGG | - | chr5.4:22802742-22802761 | MS.gene44272:intron | 30.0% |
| ! | GATATACTGTTTTCAGTGAA+AGG | - | chr5.4:22803082-22803101 | MS.gene44272:intron | 30.0% |
| ! | GTATATTGTTGATTGATTGC+AGG | - | chr5.4:22801136-22801155 | MS.gene44272:CDS | 30.0% |
| ! | TAACGTCATGTACGTTTTAT+TGG | - | chr5.4:22800626-22800645 | MS.gene44272:intron | 30.0% |
| ! | TCTAAAGCAGCAATCTTATA+TGG | + | chr5.4:22803256-22803275 | None:intergenic | 30.0% |
| ! | TGCTATTTAACAACTTTGGT+CGG | + | chr5.4:22802813-22802832 | None:intergenic | 30.0% |
| ! | TTGATTCTATAAGGTACTTG+AGG | + | chr5.4:22801886-22801905 | None:intergenic | 30.0% |
| ! | TTGGTTCATTGGTTGAAAAT+TGG | - | chr5.4:22799461-22799480 | MS.gene44272:intron | 30.0% |
| ! | TTTGAAGTAAATTCTGCATC+AGG | + | chr5.4:22802080-22802099 | None:intergenic | 30.0% |
| ! | TTTTAACAGCTGAAACAAAC+GGG | + | chr5.4:22800466-22800485 | None:intergenic | 30.0% |
| ! | TTTTTCACTTATCCTTGCAT+TGG | - | chr5.4:22799771-22799790 | MS.gene44272:intron | 30.0% |
| ! | TTTTTCTGACAAAGAGTTGA+TGG | - | chr5.4:22800767-22800786 | MS.gene44272:intron | 30.0% |
| !! | AATACAACAGTTCTAAAACG+CGG | + | chr5.4:22802912-22802931 | None:intergenic | 30.0% |
| !! | AGAAAAAGCATTAAAGACAG+TGG | + | chr5.4:22803311-22803330 | None:intergenic | 30.0% |
| !! | ATTGCAAGCAACTTGTTTTT+CGG | - | chr5.4:22800070-22800089 | MS.gene44272:intron | 30.0% |
| !! | CGAATCAATTGTTGTTTAGA+AGG | + | chr5.4:22800816-22800835 | None:intergenic | 30.0% |
| !! | CTATTGATGGACAAAACTTT+TGG | - | chr5.4:22801470-22801489 | MS.gene44272:CDS | 30.0% |
| !! | GGTTTGCTATTATTTGCTTA+TGG | - | chr5.4:22802167-22802186 | MS.gene44272:intron | 30.0% |
| !! | TTAAGTTGGAATCTTCTGTT+TGG | - | chr5.4:22799442-22799461 | MS.gene44272:intron | 30.0% |
| !!! | ACTTTTAACTTACATACCTC+GGG | + | chr5.4:22801757-22801776 | None:intergenic | 30.0% |
| !!! | CTACTTTTTGTCTCAAAATG+AGG | - | chr5.4:22798290-22798309 | MS.gene44272:intron | 30.0% |
| !!! | TTAAAGAAGATTTTGAGGCA+CGG | - | chr5.4:22798215-22798234 | MS.gene44272:intron | 30.0% |
| AAAGCAGCAATCTTATATGG+AGG | + | chr5.4:22803253-22803272 | None:intergenic | 35.0% | |
| AAGTAGTCAATCACAGATAG+CGG | + | chr5.4:22799676-22799695 | None:intergenic | 35.0% | |
| ACAAAAGACATTCCAATGCA+AGG | + | chr5.4:22799786-22799805 | None:intergenic | 35.0% | |
| ACTAGATATGGACACATAAG+TGG | + | chr5.4:22803411-22803430 | None:intergenic | 35.0% | |
| AGCTATAAACTTCGTGTTTG+AGG | - | chr5.4:22799343-22799362 | MS.gene44272:intron | 35.0% | |
| AGTAATATCGCATCCTCAAT+TGG | - | chr5.4:22803781-22803800 | MS.gene44272:CDS | 35.0% | |
| ATAAACTTCGTGTTTGAGGA+TGG | - | chr5.4:22799347-22799366 | MS.gene44272:intron | 35.0% | |
| ATCAACATGCTCTTTGTGTT+GGG | - | chr5.4:22801167-22801186 | MS.gene44272:intron | 35.0% | |
| ATCGAAATGAAGTGAAATGC+TGG | - | chr5.4:22799813-22799832 | MS.gene44272:intron | 35.0% | |
| ATGCTAAACTTGGAGATATC+GGG | - | chr5.4:22802127-22802146 | MS.gene44272:intron | 35.0% | |
| ATGTGTCCATATCTAGTTGT+TGG | - | chr5.4:22803414-22803433 | MS.gene44272:intron | 35.0% | |
| ATTATGATTCTGGTGAGGAA+TGG | - | chr5.4:22798852-22798871 | MS.gene44272:intron | 35.0% | |
| CTATAACTAGAGACTTCCAT+GGG | - | chr5.4:22798828-22798847 | MS.gene44272:intron | 35.0% | |
| CTATGTTTCCTTTCGAATCA+AGG | - | chr5.4:22803612-22803631 | MS.gene44272:CDS | 35.0% | |
| CTCAAATTCTTGCCTTAAGT+TGG | - | chr5.4:22799428-22799447 | MS.gene44272:intron | 35.0% | |
| CTGATCCCTTTGATTCTATA+AGG | + | chr5.4:22801895-22801914 | None:intergenic | 35.0% | |
| CTTCAAACCAGAAGAAGTAA+AGG | - | chr5.4:22800321-22800340 | MS.gene44272:CDS | 35.0% | |
| GAACACGTGAAATATGATCA+TGG | + | chr5.4:22803575-22803594 | None:intergenic | 35.0% | |
| GAAGGGAAATATGAGATTAC+CGG | + | chr5.4:22800798-22800817 | None:intergenic | 35.0% | |
| GATTTCATTTACAGCTGTCA+AGG | - | chr5.4:22800899-22800918 | MS.gene44272:CDS | 35.0% | |
| GGGAAAATATCAGTAACATG+AGG | + | chr5.4:22798250-22798269 | None:intergenic | 35.0% | |
| GGGAATTGTATTCTCATTCA+AGG | + | chr5.4:22803363-22803382 | None:intergenic | 35.0% | |
| GTTCAAAACATTCATCTCTC+AGG | - | chr5.4:22800928-22800947 | MS.gene44272:CDS | 35.0% | |
| TATGGTGTAACTGAGATTGT+TGG | - | chr5.4:22800723-22800742 | MS.gene44272:intron | 35.0% | |
| TCTTAACGATGTCATTAGAC+AGG | - | chr5.4:22800378-22800397 | MS.gene44272:CDS | 35.0% | |
| TGAAATTGTGGATAGTTTGG+AGG | - | chr5.4:22800993-22801012 | MS.gene44272:intron | 35.0% | |
| TGAGGTCCATGTAAATTGAA+AGG | + | chr5.4:22801848-22801867 | None:intergenic | 35.0% | |
| TGAGGTCTGCTAATAACTAA+GGG | + | chr5.4:22800595-22800614 | None:intergenic | 35.0% | |
| TGATCCAACATACATGATTC+GGG | - | chr5.4:22802600-22802619 | MS.gene44272:intron | 35.0% | |
| TGGTGAAATTGTGGATAGTT+TGG | - | chr5.4:22800990-22801009 | MS.gene44272:intron | 35.0% | |
| TTCAATTTACATGGACCTCA+TGG | - | chr5.4:22801848-22801867 | MS.gene44272:intron | 35.0% | |
| TTCCATGGGAATTATGATTC+TGG | - | chr5.4:22798842-22798861 | MS.gene44272:intron | 35.0% | |
| TTGAGGATGCGATATTACTT+CGG | + | chr5.4:22803780-22803799 | None:intergenic | 35.0% | |
| TTGAGGTCTGCTAATAACTA+AGG | + | chr5.4:22800596-22800615 | None:intergenic | 35.0% | |
| TTGATTCAATGTTGTCGATG+CGG | - | chr5.4:22798962-22798981 | MS.gene44272:intron | 35.0% | |
| TTGATTGATTGCAGGAAAGA+GGG | - | chr5.4:22801144-22801163 | MS.gene44272:CDS | 35.0% | |
| TTGTACTAAATAGCGTATCG+TGG | + | chr5.4:22799582-22799601 | None:intergenic | 35.0% | |
| ! | AACAGTAACCTTGATTCGAA+AGG | + | chr5.4:22803623-22803642 | None:intergenic | 35.0% |
| ! | CGTATTTGGAACGTTTCTTT+AGG | - | chr5.4:22798503-22798522 | MS.gene44272:intron | 35.0% |
| ! | GAATCTTCTGTTTGGTTCAT+TGG | - | chr5.4:22799450-22799469 | MS.gene44272:intron | 35.0% |
| ! | GAGATTGTTGGTATTCCTTT+TGG | - | chr5.4:22800735-22800754 | MS.gene44272:intron | 35.0% |
| ! | GATGATGATGATGATGATGA+AGG | + | chr5.4:22798039-22798058 | None:intergenic | 35.0% |
| ! | GGAATTTTATGCACTGTTCT+TGG | - | chr5.4:22802646-22802665 | MS.gene44272:intron | 35.0% |
| ! | GTTTTCAGTGCTGTAAAAGA+CGG | - | chr5.4:22801399-22801418 | MS.gene44272:intron | 35.0% |
| ! | TAATGACAGAGTGCTTCTTA+AGG | - | chr5.4:22798892-22798911 | MS.gene44272:intron | 35.0% |
| ! | TACAACAAACATTTTGCAGC+CGG | - | chr5.4:22803524-22803543 | MS.gene44272:intron | 35.0% |
| ! | TGATTTTCCTAATGTCAGTC+TGG | - | chr5.4:22800018-22800037 | MS.gene44272:intron | 35.0% |
| !! | AAAGAGTTGATGTGAACACA+AGG | + | chr5.4:22802779-22802798 | None:intergenic | 35.0% |
| !! | AAGCAACTTGTTTTTCGGAA+AGG | - | chr5.4:22800075-22800094 | MS.gene44272:intron | 35.0% |
| !! | AGCAACTTGTTTTTCGGAAA+GGG | - | chr5.4:22800076-22800095 | MS.gene44272:intron | 35.0% |
| !! | CAAAGAGTTGATGGAAATAC+CGG | - | chr5.4:22800776-22800795 | MS.gene44272:intron | 35.0% |
| !!! | CTTGTTTTTGTGTGATGACA+GGG | - | chr5.4:22798802-22798821 | MS.gene44272:intron | 35.0% |
| !!! | GTTTGCTTTTTTCTCTCACT+TGG | - | chr5.4:22798554-22798573 | MS.gene44272:intron | 35.0% |
| !!! | TCTTGTTTTTGTGTGATGAC+AGG | - | chr5.4:22798801-22798820 | MS.gene44272:intron | 35.0% |
| AACAATGGGCAAAGATAGAG+AGG | + | chr5.4:22802695-22802714 | None:intergenic | 40.0% | |
| AACTGTGGTAAATGGAACAC+TGG | - | chr5.4:22803159-22803178 | MS.gene44272:intron | 40.0% | |
| AATATCGCATCCTCAATTGG+TGG | - | chr5.4:22803784-22803803 | MS.gene44272:CDS | 40.0% | |
| ACTAATGATACCGATGCTTC+AGG | - | chr5.4:22802102-22802121 | MS.gene44272:intron | 40.0% | |
| ACTTACATACCTCGGGAATT+AGG | + | chr5.4:22801750-22801769 | None:intergenic | 40.0% | |
| AGTAGCAGTGTTGTCAATTG+TGG | + | chr5.4:22802972-22802991 | None:intergenic | 40.0% | |
| ATAGTGCATATCACGGAATC+GGG | - | chr5.4:22801647-22801666 | MS.gene44272:intron | 40.0% | |
| ATCAACTATGCTTACGTCTC+CGG | + | chr5.4:22803546-22803565 | None:intergenic | 40.0% | |
| ATCAATCTGTCCACTAGCTA+AGG | + | chr5.4:22801722-22801741 | None:intergenic | 40.0% | |
| ATGAAGTGAAATGCTGGACT+TGG | - | chr5.4:22799819-22799838 | MS.gene44272:intron | 40.0% | |
| ATGCAATCATCCTTAGCTAG+TGG | - | chr5.4:22801709-22801728 | MS.gene44272:intron | 40.0% | |
| ATGGAACACTGGAGTACAAT+AGG | - | chr5.4:22803170-22803189 | MS.gene44272:intron | 40.0% | |
| ATTGATACAGGTCCTATCTG+TGG | - | chr5.4:22801812-22801831 | MS.gene44272:intron | 40.0% | |
| CAAAACATTCATCTCTCAGG+TGG | - | chr5.4:22800931-22800950 | MS.gene44272:CDS | 40.0% | |
| CACCAGAATCATAATTCCCA+TGG | + | chr5.4:22798847-22798866 | None:intergenic | 40.0% | |
| CACTGTTCTTGGACAAAATG+CGG | - | chr5.4:22802657-22802676 | MS.gene44272:intron | 40.0% | |
| CATAGTGCATATCACGGAAT+CGG | - | chr5.4:22801646-22801665 | MS.gene44272:intron | 40.0% | |
| CATCATCATCATCATGTGCA+TGG | - | chr5.4:22798049-22798068 | MS.gene44272:CDS | 40.0% | |
| CATTGATCCTGGCTGTAATT+GGG | - | chr5.4:22799975-22799994 | MS.gene44272:CDS | 40.0% | |
| CCATGGAAGTCTCTAGTTAT+AGG | + | chr5.4:22798830-22798849 | None:intergenic | 40.0% | |
| CCTATAACTAGAGACTTCCA+TGG | - | chr5.4:22798827-22798846 | MS.gene44272:intron | 40.0% | |
| CCTTCACAAATTTCCTATGG+CGG | - | chr5.4:22799058-22799077 | MS.gene44272:intron | 40.0% | |
| CGCTATAACGTAGCGAAATT+TGG | - | chr5.4:22799539-22799558 | MS.gene44272:intron | 40.0% | |
| CGGATCAAAGTGTGTGTTAT+AGG | - | chr5.4:22801419-22801438 | MS.gene44272:intron | 40.0% | |
| CTAATGACATCGTTAAGACC+AGG | + | chr5.4:22800376-22800395 | None:intergenic | 40.0% | |
| CTAATGATACCGATGCTTCA+GGG | - | chr5.4:22802103-22802122 | MS.gene44272:intron | 40.0% | |
| GACATTACAGCACTATTGTG+AGG | - | chr5.4:22799625-22799644 | MS.gene44272:intron | 40.0% | |
| GATCAACATGCTCTTTGTGT+TGG | - | chr5.4:22801166-22801185 | MS.gene44272:intron | 40.0% | |
| GCTTTGGTATTACAGGTTCA+TGG | - | chr5.4:22803686-22803705 | MS.gene44272:CDS | 40.0% | |
| GGATATAGTGGCATTACAGT+AGG | - | chr5.4:22803719-22803738 | MS.gene44272:CDS | 40.0% | |
| GTTGATTGATTGCAGGAAAG+AGG | - | chr5.4:22801143-22801162 | MS.gene44272:CDS | 40.0% | |
| TCGACAAAAGACAGAAAGCT+AGG | + | chr5.4:22801784-22801803 | None:intergenic | 40.0% | |
| TCGATATAGATACGCCATTG+CGG | - | chr5.4:22799009-22799028 | MS.gene44272:intron | 40.0% | |
| TGAATGAATGGAAGAGACGA+TGG | + | chr5.4:22798111-22798130 | None:intergenic | 40.0% | |
| TGCGATATTACTTCGGTGAT+TGG | + | chr5.4:22803773-22803792 | None:intergenic | 40.0% | |
| TGCTAAACTTGGAGATATCG+GGG | - | chr5.4:22802128-22802147 | MS.gene44272:intron | 40.0% | |
| TGGGAATTATGATTCTGGTG+AGG | - | chr5.4:22798847-22798866 | MS.gene44272:intron | 40.0% | |
| TTGCTATGAATCCACTGCTA+CGG | + | chr5.4:22801690-22801709 | None:intergenic | 40.0% | |
| TTTAGCATTCCCTGAAGCAT+CGG | + | chr5.4:22802115-22802134 | None:intergenic | 40.0% | |
| ! | ATGACTAGCGTAAAGCGTTA+TGG | - | chr5.4:22800241-22800260 | MS.gene44272:intron | 40.0% |
| ! | ATGATGATGATGATGAAGGG+TGG | + | chr5.4:22798035-22798054 | None:intergenic | 40.0% |
| ! | ATTCTCGGCTTTGGTATTAC+AGG | - | chr5.4:22803679-22803698 | MS.gene44272:CDS | 40.0% |
| ! | CCATTTGCATTTTGTGCTTG+GGG | + | chr5.4:22803383-22803402 | None:intergenic | 40.0% |
| ! | GCCATTTGCATTTTGTGCTT+GGG | + | chr5.4:22803384-22803403 | None:intergenic | 40.0% |
| ! | TTGTTGTTAAATGGCGGTCA+TGG | + | chr5.4:22799123-22799142 | None:intergenic | 40.0% |
| !! | AACGCATAGAAGAAGCATCA+GGG | + | chr5.4:22798270-22798289 | None:intergenic | 40.0% |
| !! | CACAGATAGCGGAAAATAGA+AGG | + | chr5.4:22799665-22799684 | None:intergenic | 40.0% |
| !! | TCGATATTGATTCTCGGCTT+TGG | - | chr5.4:22803670-22803689 | MS.gene44272:CDS | 40.0% |
| !! | TGCCATTTGCATTTTGTGCT+TGG | + | chr5.4:22803385-22803404 | None:intergenic | 40.0% |
| !!! | CTTTTTTCTCTCACTTGGTC+AGG | - | chr5.4:22798559-22798578 | MS.gene44272:intron | 40.0% |
| !!! | GATGGTTGGTTTTGGAGTAA+CGG | + | chr5.4:22798093-22798112 | None:intergenic | 40.0% |
| !!! | TTTTTTAGGGTTCATCGAGC+TGG | - | chr5.4:22800280-22800299 | MS.gene44272:intron | 40.0% |
| AACATGCTCTTTGTGTTGGG+TGG | - | chr5.4:22801170-22801189 | MS.gene44272:intron | 45.0% | |
| ACACACGCAATTTGATTCCG+TGG | - | chr5.4:22798463-22798482 | MS.gene44272:intron | 45.0% | |
| AGCCTATTAGGAGTTTCACG+CGG | - | chr5.4:22800955-22800974 | MS.gene44272:intron | 45.0% | |
| AGGTCCTATCTGTGGTTCAA+AGG | - | chr5.4:22801820-22801839 | MS.gene44272:intron | 45.0% | |
| AGGTGACTCAAAACTCCATG+AGG | + | chr5.4:22801866-22801885 | None:intergenic | 45.0% | |
| ATGGCTGCCTTTACTTCTTC+TGG | + | chr5.4:22800331-22800350 | None:intergenic | 45.0% | |
| CAATTTGATTCCGTGGTGTG+TGG | - | chr5.4:22798470-22798489 | MS.gene44272:intron | 45.0% | |
| CACTATGCGCCTATTAAGAC+GGG | + | chr5.4:22801633-22801652 | None:intergenic | 45.0% | |
| CAGCAGATGTAGGTGATGAA+TGG | + | chr5.4:22799945-22799964 | None:intergenic | 45.0% | |
| CAGTCCTCCACAAGTAACAA+TGG | + | chr5.4:22800350-22800369 | None:intergenic | 45.0% | |
| CATCGATGCTTAACTTCGAC+CGG | - | chr5.4:22803827-22803846 | MS.gene44272:CDS | 45.0% | |
| CATGCCCGAATCATGTATGT+TGG | + | chr5.4:22802607-22802626 | None:intergenic | 45.0% | |
| CATTCATCACCTACATCTGC+TGG | - | chr5.4:22799943-22799962 | MS.gene44272:CDS | 45.0% | |
| CCCCAAGCACAAAATGCAAA+TGG | - | chr5.4:22803380-22803399 | MS.gene44272:intron | 45.0% | |
| CCGCCATAGGAAATTTGTGA+AGG | + | chr5.4:22799061-22799080 | None:intergenic | 45.0% | |
| CGGGGTTTATATCCAACAAG+AGG | - | chr5.4:22802146-22802165 | MS.gene44272:intron | 45.0% | |
| CTCTTTGTGTTGGGTGGAAA+TGG | - | chr5.4:22801176-22801195 | MS.gene44272:intron | 45.0% | |
| CTGTTTGGATCCACCAATTG+AGG | + | chr5.4:22803797-22803816 | None:intergenic | 45.0% | |
| GAAAAACCGCGATAGCCAAA+AGG | + | chr5.4:22800753-22800772 | None:intergenic | 45.0% | |
| GATTCTGGTGAGGAATGGAA+TGG | - | chr5.4:22798857-22798876 | MS.gene44272:intron | 45.0% | |
| GCACTATGCGCCTATTAAGA+CGG | + | chr5.4:22801634-22801653 | None:intergenic | 45.0% | |
| GCGTATCGTGGAAAGAATAG+TGG | + | chr5.4:22799570-22799589 | None:intergenic | 45.0% | |
| GCTGTAATTGGGTGGAACAA+TGG | - | chr5.4:22799986-22800005 | MS.gene44272:CDS | 45.0% | |
| GCTTCAGGGAATGCTAAACT+TGG | - | chr5.4:22802117-22802136 | MS.gene44272:intron | 45.0% | |
| GGAACCTTTGAACCACAGAT+AGG | + | chr5.4:22801827-22801846 | None:intergenic | 45.0% | |
| GTGGTTGTTTGCTCCGTATT+TGG | - | chr5.4:22798489-22798508 | MS.gene44272:intron | 45.0% | |
| GTGTTGTCAATTGTGGATCG+CGG | + | chr5.4:22802965-22802984 | None:intergenic | 45.0% | |
| GTTGTCGATGCGGAATATTG+TGG | - | chr5.4:22798972-22798991 | MS.gene44272:intron | 45.0% | |
| TAGGCGCATAGTGCATATCA+CGG | - | chr5.4:22801640-22801659 | MS.gene44272:intron | 45.0% | |
| TCAATTGTGGATCGCGGAAT+AGG | + | chr5.4:22802959-22802978 | None:intergenic | 45.0% | |
| TCCACAATTTCACCAACTCC+AGG | + | chr5.4:22800985-22801004 | None:intergenic | 45.0% | |
| TCGATGCGGAATATTGTGGA+AGG | - | chr5.4:22798976-22798995 | MS.gene44272:intron | 45.0% | |
| TGAATGGAAGAGACGATGGT+TGG | + | chr5.4:22798107-22798126 | None:intergenic | 45.0% | |
| TGATGTATGCCTAATTCCCG+AGG | - | chr5.4:22801738-22801757 | MS.gene44272:intron | 45.0% | |
| TGCAAATGCAATTCACGACG+AGG | - | chr5.4:22801211-22801230 | MS.gene44272:intron | 45.0% | |
| TGGATCCAAACAGTCGAATG+TGG | - | chr5.4:22803804-22803823 | MS.gene44272:CDS | 45.0% | |
| TGTCGAGCAAATGCATCAGA+TGG | - | chr5.4:22802625-22802644 | MS.gene44272:intron | 45.0% | |
| ! | AAATTAATGGGCCGTAGCAG+TGG | - | chr5.4:22801676-22801695 | MS.gene44272:intron | 45.0% |
| ! | AAGGCAGCCATTGTTACTTG+TGG | - | chr5.4:22800340-22800359 | MS.gene44272:CDS | 45.0% |
| ! | ATGATGATGATGAAGGGTGG+TGG | + | chr5.4:22798032-22798051 | None:intergenic | 45.0% |
| ! | GCATTGATCCTGGCTGTAAT+TGG | - | chr5.4:22799974-22799993 | MS.gene44272:CDS | 45.0% |
| ! | GGTGCATTTGCTGGATATAG+TGG | - | chr5.4:22803707-22803726 | MS.gene44272:CDS | 45.0% |
| !! | ACCTGGAGTTGGTGAAATTG+TGG | - | chr5.4:22800981-22801000 | MS.gene44272:intron | 45.0% |
| !! | GAACGCATAGAAGAAGCATC+AGG | + | chr5.4:22798271-22798290 | None:intergenic | 45.0% |
| !! | GGTATTCCTTTTGGCTATCG+CGG | - | chr5.4:22800744-22800763 | MS.gene44272:intron | 45.0% |
| !! | TCAAATGAAGTCGGGTTGAC+CGG | + | chr5.4:22803849-22803868 | None:intergenic | 45.0% |
| !!! | AACTTTTGGCTTTGACACCG+CGG | - | chr5.4:22801484-22801503 | MS.gene44272:CDS | 45.0% |
| !!! | AGAATGGCATGGCGGTTTTT+TGG | + | chr5.4:22799088-22799107 | None:intergenic | 45.0% |
| !!! | GAAGAGACGATGGTTGGTTT+TGG | + | chr5.4:22798101-22798120 | None:intergenic | 45.0% |
| CAGGTTCATGGTGCATTTGC+TGG | - | chr5.4:22803698-22803717 | MS.gene44272:CDS | 50.0% | |
| CGATGCCACATTCGACTGTT+TGG | + | chr5.4:22803812-22803831 | None:intergenic | 50.0% | |
| CTATTAGGAGTTTCACGCGG+AGG | - | chr5.4:22800958-22800977 | MS.gene44272:intron | 50.0% | |
| CTCCGCGTGAAACTCCTAAT+AGG | + | chr5.4:22800960-22800979 | None:intergenic | 50.0% | |
| GAGCAAACAACCACACACCA+CGG | + | chr5.4:22798483-22798502 | None:intergenic | 50.0% | |
| GGTGGAAATGGTACACATGC+TGG | - | chr5.4:22801188-22801207 | MS.gene44272:intron | 50.0% | |
| GTGGCAGTTCATAGCCGTTT+CGG | - | chr5.4:22799391-22799410 | MS.gene44272:intron | 50.0% | |
| TCTCTGTGCTTCTTCAACCG+CGG | + | chr5.4:22801504-22801523 | None:intergenic | 50.0% | |
| TGATCCTGGCTGTAATTGGG+TGG | - | chr5.4:22799978-22799997 | MS.gene44272:CDS | 50.0% | |
| TGCCACTAAAACACTTCGCG+AGG | + | chr5.4:22799377-22799396 | None:intergenic | 50.0% | |
| TGGCAGTTCATAGCCGTTTC+GGG | - | chr5.4:22799392-22799411 | MS.gene44272:intron | 50.0% | |
| TGTTCCACCCAATTACAGCC+AGG | + | chr5.4:22799985-22800004 | None:intergenic | 50.0% | |
| TTGTGAAGGAATTCCCGCCA+TGG | + | chr5.4:22799047-22799066 | None:intergenic | 50.0% | |
| ! | AGCTGTAGTTTGTGTGGCAG+AGG | - | chr5.4:22801913-22801932 | MS.gene44272:CDS | 50.0% |
| ! | GCAGCCATTGTTACTTGTGG+AGG | - | chr5.4:22800343-22800362 | MS.gene44272:CDS | 50.0% |
| ! | GCTGTAGTTTGTGTGGCAGA+GGG | - | chr5.4:22801914-22801933 | MS.gene44272:intron | 50.0% |
| ! | GGGATCAGCTGTAGTTTGTG+TGG | - | chr5.4:22801907-22801926 | MS.gene44272:CDS | 50.0% |
| !! | TGCCTCGCGAAGTGTTTTAG+TGG | - | chr5.4:22799372-22799391 | MS.gene44272:intron | 50.0% |
| !!! | GTTTTTTGGACAGCCGCCAT+AGG | + | chr5.4:22799074-22799093 | None:intergenic | 50.0% |
| ACTTGTGGAGGACTGTGTCC+TGG | - | chr5.4:22800355-22800374 | MS.gene44272:CDS | 55.0% | |
| AGATACGCCATTGCGGCATG+TGG | - | chr5.4:22799016-22799035 | MS.gene44272:intron | 55.0% | |
| CTCTCAGGTGGCAGCCTATT+AGG | - | chr5.4:22800943-22800962 | MS.gene44272:intron | 55.0% | |
| TGAAGGAATTCCCGCCATGG+TGG | + | chr5.4:22799044-22799063 | None:intergenic | 55.0% | |
| ! | AAGGGTGGTGGTGAGGTTAG+GGG | + | chr5.4:22798020-22798039 | None:intergenic | 55.0% |
| ! | GAAGGGTGGTGGTGAGGTTA+GGG | + | chr5.4:22798021-22798040 | None:intergenic | 55.0% |
| ! | GATGATGAAGGGTGGTGGTG+AGG | + | chr5.4:22798027-22798046 | None:intergenic | 55.0% |
| ! | TGAAGGGTGGTGGTGAGGTT+AGG | + | chr5.4:22798022-22798041 | None:intergenic | 55.0% |
| ACCGCCATGCCATTCTGCCA+TGG | - | chr5.4:22799092-22799111 | MS.gene44272:intron | 60.0% | |
| CACTGAGCGCCAGCAGATGT+AGG | + | chr5.4:22799955-22799974 | None:intergenic | 60.0% | |
| GCCATGCCATTCTGCCATGG+CGG | - | chr5.4:22799095-22799114 | MS.gene44272:intron | 60.0% | |
| GCCATGGCAGAATGGCATGG+CGG | + | chr5.4:22799096-22799115 | None:intergenic | 60.0% | |
| GGGTTCATCGAGCTGGACCT+CGG | - | chr5.4:22800287-22800306 | MS.gene44272:intron | 60.0% | |
| GTTTGTGTGGCAGAGGGAGC+AGG | - | chr5.4:22801920-22801939 | MS.gene44272:intron | 60.0% | |
| ! | GGCGCTCAGTGCATTGATCC+TGG | - | chr5.4:22799964-22799983 | MS.gene44272:CDS | 60.0% |
| ATGGCGCCGCCATGGCAGAA+TGG | + | chr5.4:22799104-22799123 | None:intergenic | 65.0% | |
| GCCGCCATGGCAGAATGGCA+TGG | + | chr5.4:22799099-22799118 | None:intergenic | 65.0% | |
| GGAGTTTCACGCGGAGGACC+TGG | - | chr5.4:22800964-22800983 | MS.gene44272:intron | 65.0% | |
| TCACGCGGAGGACCTGGAGT+TGG | - | chr5.4:22800970-22800989 | MS.gene44272:intron | 65.0% | |
| TGTGGCAGAGGGAGCAGGAC+AGG | - | chr5.4:22801925-22801944 | MS.gene44272:intron | 65.0% | |
| GCATGTGGCGCCACCATGGC+GGG | - | chr5.4:22799031-22799050 | MS.gene44272:intron | 70.0% | |
| GGCATGTGGCGCCACCATGG+CGG | - | chr5.4:22799030-22799049 | MS.gene44272:intron | 70.0% | |
| GGTGGCGCCACATGCCGCAA+TGG | + | chr5.4:22799026-22799045 | None:intergenic | 70.0% | |
| TGCGGCATGTGGCGCCACCA+TGG | - | chr5.4:22799027-22799046 | MS.gene44272:intron | 70.0% | |
| TGGCGGTCATGGCGCCGCCA+TGG | + | chr5.4:22799112-22799131 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 22797998 | 22803868 | 22797998 | ID=MS.gene44272 |
| chr5.4 | mRNA | 22797998 | 22803868 | 22797998 | ID=MS.gene44272.t1;Parent=MS.gene44272 |
| chr5.4 | exon | 22803555 | 22803868 | 22803555 | ID=MS.gene44272.t1.exon1;Parent=MS.gene44272.t1 |
| chr5.4 | CDS | 22803555 | 22803868 | 22803555 | ID=cds.MS.gene44272.t1;Parent=MS.gene44272.t1 |
| chr5.4 | exon | 22802953 | 22803043 | 22802953 | ID=MS.gene44272.t1.exon2;Parent=MS.gene44272.t1 |
| chr5.4 | CDS | 22802953 | 22803043 | 22802953 | ID=cds.MS.gene44272.t1;Parent=MS.gene44272.t1 |
| chr5.4 | exon | 22801859 | 22801932 | 22801859 | ID=MS.gene44272.t1.exon3;Parent=MS.gene44272.t1 |
| chr5.4 | CDS | 22801859 | 22801932 | 22801859 | ID=cds.MS.gene44272.t1;Parent=MS.gene44272.t1 |
| chr5.4 | exon | 22801467 | 22801578 | 22801467 | ID=MS.gene44272.t1.exon4;Parent=MS.gene44272.t1 |
| chr5.4 | CDS | 22801467 | 22801578 | 22801467 | ID=cds.MS.gene44272.t1;Parent=MS.gene44272.t1 |
| chr5.4 | exon | 22801069 | 22801164 | 22801069 | ID=MS.gene44272.t1.exon5;Parent=MS.gene44272.t1 |
| chr5.4 | CDS | 22801069 | 22801164 | 22801069 | ID=cds.MS.gene44272.t1;Parent=MS.gene44272.t1 |
| chr5.4 | exon | 22800852 | 22800953 | 22800852 | ID=MS.gene44272.t1.exon6;Parent=MS.gene44272.t1 |
| chr5.4 | CDS | 22800852 | 22800953 | 22800852 | ID=cds.MS.gene44272.t1;Parent=MS.gene44272.t1 |
| chr5.4 | exon | 22800634 | 22800708 | 22800634 | ID=MS.gene44272.t1.exon7;Parent=MS.gene44272.t1 |
| chr5.4 | CDS | 22800634 | 22800708 | 22800634 | ID=cds.MS.gene44272.t1;Parent=MS.gene44272.t1 |
| chr5.4 | exon | 22800319 | 22800459 | 22800319 | ID=MS.gene44272.t1.exon8;Parent=MS.gene44272.t1 |
| chr5.4 | CDS | 22800319 | 22800459 | 22800319 | ID=cds.MS.gene44272.t1;Parent=MS.gene44272.t1 |
| chr5.4 | exon | 22800107 | 22800223 | 22800107 | ID=MS.gene44272.t1.exon9;Parent=MS.gene44272.t1 |
| chr5.4 | CDS | 22800107 | 22800223 | 22800107 | ID=cds.MS.gene44272.t1;Parent=MS.gene44272.t1 |
| chr5.4 | exon | 22799920 | 22800024 | 22799920 | ID=MS.gene44272.t1.exon10;Parent=MS.gene44272.t1 |
| chr5.4 | CDS | 22799920 | 22800024 | 22799920 | ID=cds.MS.gene44272.t1;Parent=MS.gene44272.t1 |
| chr5.4 | exon | 22799699 | 22799779 | 22799699 | ID=MS.gene44272.t1.exon11;Parent=MS.gene44272.t1 |
| chr5.4 | CDS | 22799699 | 22799779 | 22799699 | ID=cds.MS.gene44272.t1;Parent=MS.gene44272.t1 |
| chr5.4 | exon | 22799188 | 22799316 | 22799188 | ID=MS.gene44272.t1.exon12;Parent=MS.gene44272.t1 |
| chr5.4 | CDS | 22799188 | 22799316 | 22799188 | ID=cds.MS.gene44272.t1;Parent=MS.gene44272.t1 |
| chr5.4 | exon | 22797998 | 22798165 | 22797998 | ID=MS.gene44272.t1.exon13;Parent=MS.gene44272.t1 |
| chr5.4 | CDS | 22797998 | 22798165 | 22797998 | ID=cds.MS.gene44272.t1;Parent=MS.gene44272.t1 |
| Gene Sequence |
| Protein sequence |
