Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44360.t1 | XP_003613209.1 | 99.5 | 217 | 1 | 0 | 1 | 217 | 1 | 217 | 1.80E-107 | 398.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44360.t1 | Q9LDT3 | 56.4 | 227 | 84 | 5 | 2 | 217 | 9 | 231 | 3.9e-47 | 189.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44360.t1 | G7K086 | 99.5 | 217 | 1 | 0 | 1 | 217 | 1 | 217 | 1.3e-107 | 398.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene44360.t1 | TF | C2C2-YABBY |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053074 | MS.gene44360 | 0.807277 | 5.47E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44360.t1 | MTR_5g034030 | 99.539 | 217 | 1 | 0 | 1 | 217 | 1 | 217 | 6.88e-164 | 451 |
| MS.gene44360.t1 | MTR_4g114730 | 49.686 | 159 | 58 | 4 | 12 | 162 | 14 | 158 | 1.12e-44 | 147 |
| MS.gene44360.t1 | MTR_2g087740 | 51.250 | 160 | 62 | 4 | 12 | 162 | 12 | 164 | 6.68e-44 | 145 |
| MS.gene44360.t1 | MTR_4g050300 | 48.344 | 151 | 73 | 1 | 12 | 162 | 9 | 154 | 5.85e-41 | 137 |
| MS.gene44360.t1 | MTR_4g025900 | 50.000 | 156 | 70 | 2 | 14 | 162 | 25 | 179 | 6.93e-40 | 136 |
| MS.gene44360.t1 | MTR_4g101660 | 51.553 | 161 | 64 | 5 | 12 | 162 | 18 | 174 | 2.23e-39 | 135 |
| MS.gene44360.t1 | MTR_5g046230 | 34.021 | 194 | 99 | 3 | 12 | 195 | 17 | 191 | 1.45e-29 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44360.t1 | AT1G23420 | 55.947 | 227 | 85 | 4 | 2 | 217 | 9 | 231 | 4.21e-73 | 221 |
| MS.gene44360.t1 | AT1G23420 | 55.947 | 227 | 85 | 4 | 2 | 217 | 40 | 262 | 5.59e-73 | 222 |
| MS.gene44360.t1 | AT2G26580 | 50.327 | 153 | 60 | 3 | 12 | 162 | 9 | 147 | 2.67e-46 | 151 |
| MS.gene44360.t1 | AT2G26580 | 50.327 | 153 | 60 | 3 | 12 | 162 | 9 | 147 | 2.67e-46 | 151 |
| MS.gene44360.t1 | AT2G45190 | 46.061 | 165 | 79 | 1 | 8 | 162 | 19 | 183 | 1.01e-42 | 144 |
| MS.gene44360.t1 | AT1G08465 | 49.677 | 155 | 66 | 4 | 12 | 162 | 8 | 154 | 7.40e-41 | 137 |
| MS.gene44360.t1 | AT4G00180 | 45.810 | 179 | 71 | 5 | 8 | 162 | 19 | 195 | 8.09e-39 | 134 |
| MS.gene44360.t1 | AT4G00180 | 43.976 | 166 | 67 | 5 | 21 | 162 | 1 | 164 | 6.41e-30 | 110 |
| MS.gene44360.t1 | AT1G69180 | 40.385 | 156 | 73 | 4 | 12 | 163 | 19 | 158 | 5.82e-29 | 107 |
| MS.gene44360.t1 | AT2G45190 | 63.636 | 66 | 24 | 0 | 97 | 162 | 54 | 119 | 3.98e-25 | 97.1 |
Find 43 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGCAGAGAAGAGATTAAA+AGG | 0.220244 | 5.1:+24920957 | MS.gene44360:intron |
| CATCACCTTTGCACTGAGTT+GGG | 0.247070 | 5.1:-24921222 | None:intergenic |
| GCTTCCTTGTGAGCCATATC+AGG | 0.254990 | 5.1:-24920995 | None:intergenic |
| ACTCATGATTACCATTAAAA+TGG | 0.296363 | 5.1:-24920218 | None:intergenic |
| CTTTCCAAGATGGAATTTCT+TGG | 0.337983 | 5.1:-24922194 | None:intergenic |
| GTCTTGTTTGCATCTTCATC+TGG | 0.344790 | 5.1:-24920616 | None:intergenic |
| GATGAGTAAGAGATGCTAAA+AGG | 0.346967 | 5.1:-24920453 | None:intergenic |
| TGTACATAGCATATCTGTTC+TGG | 0.364295 | 5.1:-24920178 | None:intergenic |
| GGTGTTCTTTGTCTCTTCTC+TGG | 0.372695 | 5.1:-24920824 | None:intergenic |
| TCATCACCTTTGCACTGAGT+TGG | 0.384038 | 5.1:-24921223 | None:intergenic |
| TATTCATTCATTCACTCAAA+TGG | 0.405002 | 5.1:-24922221 | None:intergenic |
| TTATTGACTACATTGCTGAT+TGG | 0.408933 | 5.1:-24920703 | None:intergenic |
| CAGCTTCATGAGGGTCCACT+TGG | 0.437038 | 5.1:-24921288 | None:intergenic |
| ATCACCTTTGCACTGAGTTG+GGG | 0.440172 | 5.1:-24921221 | None:intergenic |
| GATCCACAAATTGATCTGTC+TGG | 0.455209 | 5.1:-24921258 | None:intergenic |
| ACAAGGATTCCGTGGAAGAA+AGG | 0.512794 | 5.1:+24922169 | MS.gene44360:CDS |
| AGCATCTCTTACTCATCTTG+AGG | 0.521370 | 5.1:+24920459 | MS.gene44360:CDS |
| GGTACCAAGAAATTCCATCT+TGG | 0.522438 | 5.1:+24922190 | MS.gene44360:CDS |
| AGCTTCATGAGGGTCCACTT+GGG | 0.522893 | 5.1:-24921287 | None:intergenic |
| ACAATCAGAATAAGTCATCA+TGG | 0.529221 | 5.1:-24920662 | None:intergenic |
| AAATGGTGTCCTTTCCAAGA+TGG | 0.529231 | 5.1:-24922204 | None:intergenic |
| TAGCCAGACAGATCAATTTG+TGG | 0.529249 | 5.1:+24921255 | MS.gene44360:CDS |
| AGAAGAGATTAAAAGGCTAA+AGG | 0.529887 | 5.1:+24920964 | MS.gene44360:CDS |
| ATATTAATTACTTGATGAAG+CGG | 0.533614 | 5.1:-24920859 | None:intergenic |
| TTCTTGGTACCTTTCTTCCA+CGG | 0.541076 | 5.1:-24922178 | None:intergenic |
| CTTCCTTGTGAGCCATATCA+GGG | 0.545406 | 5.1:-24920994 | None:intergenic |
| GAGATGCTAAAAGGTGGAAA+GGG | 0.553103 | 5.1:-24920444 | None:intergenic |
| AGAGATGCTAAAAGGTGGAA+AGG | 0.557063 | 5.1:-24920445 | None:intergenic |
| GAGTAAGAGATGCTAAAAGG+TGG | 0.562368 | 5.1:-24920450 | None:intergenic |
| ACCATTGTCAAACTGCTGCA+TGG | 0.563063 | 5.1:-24920355 | None:intergenic |
| CAGGTGAATGAAGAAGAACA+AGG | 0.564909 | 5.1:+24922152 | MS.gene44360:intron |
| GAAGAAGAACAAGGATTCCG+TGG | 0.572480 | 5.1:+24922161 | MS.gene44360:CDS |
| AAACCCTGATATGGCTCACA+AGG | 0.577441 | 5.1:+24920991 | MS.gene44360:CDS |
| CAAGAAATTCCATCTTGGAA+AGG | 0.597804 | 5.1:+24922195 | MS.gene44360:CDS |
| TCACCTTTGCACTGAGTTGG+GGG | 0.601505 | 5.1:-24921220 | None:intergenic |
| GATGACTTATTCTGATTGTG+AGG | 0.620697 | 5.1:+24920666 | MS.gene44360:CDS |
| AGTGGACCCTCATGAAGCTG+AGG | 0.650640 | 5.1:+24921291 | MS.gene44360:CDS |
| TCCATGCAGCAGTTTGACAA+TGG | 0.655787 | 5.1:+24920354 | MS.gene44360:CDS |
| CAGATATGCTATGTACAATG+TGG | 0.657256 | 5.1:+24920184 | MS.gene44360:CDS |
| ATGAAGCGGTTATAAGCTGA+TGG | 0.663979 | 5.1:-24920845 | None:intergenic |
| TGTGGATCTTGACTCCCAAG+TGG | 0.667148 | 5.1:+24921273 | MS.gene44360:CDS |
| ATGCAGCAGTTTGACAATGG+TGG | 0.669140 | 5.1:+24920357 | MS.gene44360:CDS |
| ATGGTGGTGACAGTAAGATG+TGG | 0.764759 | 5.1:+24920373 | MS.gene44360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATAGTAAATAAATAAG+GGG | + | chr5.1:24921691-24921710 | MS.gene44360:intron | 10.0% |
| !!! | TTTTATTTTTAATTTTCAGT+GGG | + | chr5.1:24921189-24921208 | MS.gene44360:intron | 10.0% |
| !!! | TTTTTATTTTTAATTTTCAG+TGG | + | chr5.1:24921188-24921207 | MS.gene44360:intron | 10.0% |
| !! | AAAGAAAATAAACAAAGTAT+TGG | - | chr5.1:24920506-24920525 | None:intergenic | 15.0% |
| !! | ATCATGTTGTATTTATTTAT+TGG | - | chr5.1:24922000-24922019 | None:intergenic | 15.0% |
| !! | TCATGTTGTATTTATTTATT+GGG | - | chr5.1:24921999-24922018 | None:intergenic | 15.0% |
| !!! | TATAGGAAATTTTATAAGAT+TGG | + | chr5.1:24921128-24921147 | MS.gene44360:intron | 15.0% |
| !!! | TTGTTTATTTTCTTTTAGTT+AGG | + | chr5.1:24920511-24920530 | MS.gene44360:intron | 15.0% |
| !! | AAAGTAGTTAAATACACTTA+AGG | + | chr5.1:24921919-24921938 | MS.gene44360:intron | 20.0% |
| !! | ATATTAATTACTTGATGAAG+CGG | - | chr5.1:24920862-24920881 | None:intergenic | 20.0% |
| !!! | CGAAGCATAATATTTTTAAA+AGG | - | chr5.1:24921656-24921675 | None:intergenic | 20.0% |
| ! | AAGTTGTTAAATACACCTTA+AGG | + | chr5.1:24921774-24921793 | MS.gene44360:intron | 25.0% |
| ! | ACACCTTAATAAAATCTAGT+GGG | - | chr5.1:24921731-24921750 | None:intergenic | 25.0% |
| ! | ACTCATGATTACCATTAAAA+TGG | - | chr5.1:24920221-24920240 | None:intergenic | 25.0% |
| ! | CTTCTTAACTTCATCATATT+TGG | + | chr5.1:24920253-24920272 | MS.gene44360:intron | 25.0% |
| ! | TATAGATTACAAAAACAGGT+AGG | - | chr5.1:24922093-24922112 | None:intergenic | 25.0% |
| ! | TCAACTCATTTGAAAACTAT+AGG | + | chr5.1:24921111-24921130 | MS.gene44360:intron | 25.0% |
| !! | ACACCTTCTAAAAAATAAGT+GGG | + | chr5.1:24921813-24921832 | MS.gene44360:intron | 25.0% |
| !! | ACACCTTCTAAAAAATAAGT+GGG | - | chr5.1:24921832-24921813 | None:intergenic | 25.0% |
| !! | ATTCTGCAATACCATTTTAA+TGG | + | chr5.1:24920207-24920226 | MS.gene44360:CDS | 25.0% |
| !!! | CATTAAAACTTGCTATAAGT+AGG | + | chr5.1:24921409-24921428 | MS.gene44360:intron | 25.0% |
| AATGCAGAGAAGAGATTAAA+AGG | + | chr5.1:24920957-24920976 | MS.gene44360:intron | 30.0% | |
| ACAATCAGAATAAGTCATCA+TGG | - | chr5.1:24920665-24920684 | None:intergenic | 30.0% | |
| ACTTTATATCCTCATCTTGT+TGG | + | chr5.1:24921537-24921556 | MS.gene44360:intron | 30.0% | |
| AGAAGAGATTAAAAGGCTAA+AGG | + | chr5.1:24920964-24920983 | MS.gene44360:CDS | 30.0% | |
| AGTAGGAGATTCTTTAGATT+TGG | + | chr5.1:24921426-24921445 | MS.gene44360:intron | 30.0% | |
| ATGTAGTCAATAAACGTATG+TGG | + | chr5.1:24920713-24920732 | MS.gene44360:intron | 30.0% | |
| CACACCTTAATAAAATCTAG+TGG | - | chr5.1:24921732-24921751 | None:intergenic | 30.0% | |
| GTCTCTTTCTTTATATCACA+TGG | + | chr5.1:24921475-24921494 | MS.gene44360:intron | 30.0% | |
| TAAAAGGCTATGTCAAATGA+CGG | - | chr5.1:24921640-24921659 | None:intergenic | 30.0% | |
| TATCACATGGTGAATAGTAA+AGG | + | chr5.1:24921488-24921507 | MS.gene44360:intron | 30.0% | |
| ! | AAAACAGGTAGGTTTTTCTT+TGG | - | chr5.1:24922082-24922101 | None:intergenic | 30.0% |
| ! | AAATAAATAAGGGGTTTGCT+AGG | + | chr5.1:24921700-24921719 | MS.gene44360:intron | 30.0% |
| ! | ACACCCACTAGATTTTATTA+AGG | + | chr5.1:24921725-24921744 | MS.gene44360:intron | 30.0% |
| ! | CACACCTTCTAAAAAATAAG+TGG | + | chr5.1:24921812-24921831 | MS.gene44360:intron | 30.0% |
| ! | CACACCTTCTAAAAAATAAG+TGG | - | chr5.1:24921831-24921812 | None:intergenic | 30.0% |
| ! | TTATTGACTACATTGCTGAT+TGG | - | chr5.1:24920706-24920725 | None:intergenic | 30.0% |
| ! | TTTTAGCAACATTCACCTTA+AGG | - | chr5.1:24921792-24921811 | None:intergenic | 30.0% |
| !!! | ACACCCACTTATTTTTTAGA+AGG | + | chr5.1:24921872-24921891 | MS.gene44360:intron | 30.0% |
| !!! | ACACCCACTTATTTTTTAGA+AGG | - | chr5.1:24921891-24921872 | None:intergenic | 30.0% |
| !!! | TAGCTAGTTAGTTTTGAACA+TGG | - | chr5.1:24921086-24921105 | None:intergenic | 30.0% |
| AAAGGCTAAAAACCCTGATA+TGG | + | chr5.1:24920982-24921001 | MS.gene44360:CDS | 35.0% | |
| ACTCCCACATAAAAACTAGT+GGG | + | chr5.1:24921958-24921977 | MS.gene44360:intron | 35.0% | |
| CAAGAAATTCCATCTTGGAA+AGG | + | chr5.1:24922195-24922214 | MS.gene44360:CDS | 35.0% | |
| CAGATATGCTATGTACAATG+TGG | + | chr5.1:24920184-24920203 | MS.gene44360:CDS | 35.0% | |
| CGGCTATAGATTACAAAAAC+AGG | - | chr5.1:24922097-24922116 | None:intergenic | 35.0% | |
| CTTTCCAAGATGGAATTTCT+TGG | - | chr5.1:24922197-24922216 | None:intergenic | 35.0% | |
| GATGACTTATTCTGATTGTG+AGG | + | chr5.1:24920666-24920685 | MS.gene44360:CDS | 35.0% | |
| GATGAGTAAGAGATGCTAAA+AGG | - | chr5.1:24920456-24920475 | None:intergenic | 35.0% | |
| GTACAGCTGCAAAAAATGTA+AGG | + | chr5.1:24921023-24921042 | MS.gene44360:intron | 35.0% | |
| GTTCTTGCAATTGTCAAGTA+CGG | - | chr5.1:24922117-24922136 | None:intergenic | 35.0% | |
| TCATTTCAATTGTGTGATGC+AGG | + | chr5.1:24920324-24920343 | MS.gene44360:intron | 35.0% | |
| TGGTGACTTACTCATAATCT+TGG | + | chr5.1:24921148-24921167 | MS.gene44360:intron | 35.0% | |
| TGTACATAGCATATCTGTTC+TGG | - | chr5.1:24920181-24920200 | None:intergenic | 35.0% | |
| TGTATGTTAGCAACTCCTAT+AGG | + | chr5.1:24921836-24921855 | MS.gene44360:intron | 35.0% | |
| ! | TTTTTACCTCAGCTTCATGA+GGG | - | chr5.1:24921300-24921319 | None:intergenic | 35.0% |
| !! | GTTCTGGAAGATCAAAAAGA+TGG | - | chr5.1:24920165-24920184 | None:intergenic | 35.0% |
| !!! | ACACCCACTAGTTTTTATGT+GGG | - | chr5.1:24921964-24921983 | None:intergenic | 35.0% |
| AAATGGTGTCCTTTCCAAGA+TGG | - | chr5.1:24922207-24922226 | None:intergenic | 40.0% | |
| AACTCCTATAGGCATTTGCT+AGG | + | chr5.1:24921847-24921866 | MS.gene44360:intron | 40.0% | |
| AGAGATGCTAAAAGGTGGAA+AGG | - | chr5.1:24920448-24920467 | None:intergenic | 40.0% | |
| AGCATCTCTTACTCATCTTG+AGG | + | chr5.1:24920459-24920478 | MS.gene44360:CDS | 40.0% | |
| AGTCTTTGCCATTGAATGCA+TGG | - | chr5.1:24921520-24921539 | None:intergenic | 40.0% | |
| ATGAAGCGGTTATAAGCTGA+TGG | - | chr5.1:24920848-24920867 | None:intergenic | 40.0% | |
| ATGACATTGATCCACCAAAC+TGG | + | chr5.1:24921572-24921591 | MS.gene44360:intron | 40.0% | |
| CACTCCCACATAAAAACTAG+TGG | + | chr5.1:24921957-24921976 | MS.gene44360:intron | 40.0% | |
| CAGGTGAATGAAGAAGAACA+AGG | + | chr5.1:24922152-24922171 | MS.gene44360:intron | 40.0% | |
| GAGATGCTAAAAGGTGGAAA+GGG | - | chr5.1:24920447-24920466 | None:intergenic | 40.0% | |
| GAGTAAGAGATGCTAAAAGG+TGG | - | chr5.1:24920453-24920472 | None:intergenic | 40.0% | |
| GATCCACAAATTGATCTGTC+TGG | - | chr5.1:24921261-24921280 | None:intergenic | 40.0% | |
| GATTGGAAACCAACAAGATG+AGG | - | chr5.1:24921549-24921568 | None:intergenic | 40.0% | |
| GGTACCAAGAAATTCCATCT+TGG | + | chr5.1:24922190-24922209 | MS.gene44360:CDS | 40.0% | |
| GGTATAGTCCATGCATTCAA+TGG | + | chr5.1:24921509-24921528 | MS.gene44360:intron | 40.0% | |
| GTATCCTAGCAAATGCCTAT+AGG | - | chr5.1:24921854-24921873 | None:intergenic | 40.0% | |
| TAGCCAGACAGATCAATTTG+TGG | + | chr5.1:24921255-24921274 | MS.gene44360:CDS | 40.0% | |
| TCTGCAAGAACTTTCCAGTT+TGG | - | chr5.1:24921589-24921608 | None:intergenic | 40.0% | |
| TGGATCAATGTCATGCTGAT+TGG | - | chr5.1:24921566-24921585 | None:intergenic | 40.0% | |
| TTCTTGGTACCTTTCTTCCA+CGG | - | chr5.1:24922181-24922200 | None:intergenic | 40.0% | |
| ! | GTTTTTACCTCAGCTTCATG+AGG | - | chr5.1:24921301-24921320 | None:intergenic | 40.0% |
| !! | GAACTGCATCATCACTTTTC+AGG | + | chr5.1:24922133-24922152 | MS.gene44360:intron | 40.0% |
| !! | GTCTTGTTTGCATCTTCATC+TGG | - | chr5.1:24920619-24920638 | None:intergenic | 40.0% |
| !!! | CACACCCACTAGTTTTTATG+TGG | - | chr5.1:24921965-24921984 | None:intergenic | 40.0% |
| AAACCCTGATATGGCTCACA+AGG | + | chr5.1:24920991-24921010 | MS.gene44360:CDS | 45.0% | |
| ACAAGGATTCCGTGGAAGAA+AGG | + | chr5.1:24922169-24922188 | MS.gene44360:CDS | 45.0% | |
| ACCATTGTCAAACTGCTGCA+TGG | - | chr5.1:24920358-24920377 | None:intergenic | 45.0% | |
| ATCACCTTTGCACTGAGTTG+GGG | - | chr5.1:24921224-24921243 | None:intergenic | 45.0% | |
| ATGCAGCAGTTTGACAATGG+TGG | + | chr5.1:24920357-24920376 | MS.gene44360:CDS | 45.0% | |
| CATCACCTTTGCACTGAGTT+GGG | - | chr5.1:24921225-24921244 | None:intergenic | 45.0% | |
| CTTCCTTGTGAGCCATATCA+GGG | - | chr5.1:24920997-24921016 | None:intergenic | 45.0% | |
| GAAGAAGAACAAGGATTCCG+TGG | + | chr5.1:24922161-24922180 | MS.gene44360:CDS | 45.0% | |
| GCAAGAACTTTCCAGTTTGG+TGG | - | chr5.1:24921586-24921605 | None:intergenic | 45.0% | |
| GGCACTGTGTGCATTTATAG+TGG | + | chr5.1:24921447-24921466 | MS.gene44360:intron | 45.0% | |
| GGTGTTCTTTGTCTCTTCTC+TGG | - | chr5.1:24920827-24920846 | None:intergenic | 45.0% | |
| TCATCACCTTTGCACTGAGT+TGG | - | chr5.1:24921226-24921245 | None:intergenic | 45.0% | |
| TCCATGCAGCAGTTTGACAA+TGG | + | chr5.1:24920354-24920373 | MS.gene44360:CDS | 45.0% | |
| ! | ATGGTGGTGACAGTAAGATG+TGG | + | chr5.1:24920373-24920392 | MS.gene44360:CDS | 45.0% |
| !! | AATAATATAGTAAATAAATA+AGG | + | chr5.1:24921689-24921708 | MS.gene44360:intron | 5.0% |
| !! | ATAATATAGTAAATAAATAA+GGG | + | chr5.1:24921690-24921709 | MS.gene44360:intron | 5.0% |
| AGCTTCATGAGGGTCCACTT+GGG | - | chr5.1:24921290-24921309 | None:intergenic | 50.0% | |
| GCTTCCTTGTGAGCCATATC+AGG | - | chr5.1:24920998-24921017 | None:intergenic | 50.0% | |
| TGTGGATCTTGACTCCCAAG+TGG | + | chr5.1:24921273-24921292 | MS.gene44360:CDS | 50.0% | |
| ! | TCACCTTTGCACTGAGTTGG+GGG | - | chr5.1:24921223-24921242 | None:intergenic | 50.0% |
| AGTGGACCCTCATGAAGCTG+AGG | + | chr5.1:24921291-24921310 | MS.gene44360:CDS | 55.0% | |
| CAGCTTCATGAGGGTCCACT+TGG | - | chr5.1:24921291-24921310 | None:intergenic | 55.0% | |
| TGTCCCCCAACTCAGTGCAA+AGG | + | chr5.1:24921217-24921236 | MS.gene44360:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 24920148 | 24922232 | 24920148 | ID=MS.gene44360 |
| chr5.1 | mRNA | 24920148 | 24922232 | 24920148 | ID=MS.gene44360.t1;Parent=MS.gene44360 |
| chr5.1 | exon | 24920148 | 24920228 | 24920148 | ID=MS.gene44360.t1.exon1;Parent=MS.gene44360.t1 |
| chr5.1 | CDS | 24920148 | 24920228 | 24920148 | ID=cds.MS.gene44360.t1;Parent=MS.gene44360.t1 |
| chr5.1 | exon | 24920346 | 24920480 | 24920346 | ID=MS.gene44360.t1.exon2;Parent=MS.gene44360.t1 |
| chr5.1 | CDS | 24920346 | 24920480 | 24920346 | ID=cds.MS.gene44360.t1;Parent=MS.gene44360.t1 |
| chr5.1 | exon | 24920598 | 24920727 | 24920598 | ID=MS.gene44360.t1.exon3;Parent=MS.gene44360.t1 |
| chr5.1 | CDS | 24920598 | 24920727 | 24920598 | ID=cds.MS.gene44360.t1;Parent=MS.gene44360.t1 |
| chr5.1 | exon | 24920822 | 24920870 | 24920822 | ID=MS.gene44360.t1.exon4;Parent=MS.gene44360.t1 |
| chr5.1 | CDS | 24920822 | 24920870 | 24920822 | ID=cds.MS.gene44360.t1;Parent=MS.gene44360.t1 |
| chr5.1 | exon | 24920964 | 24921039 | 24920964 | ID=MS.gene44360.t1.exon5;Parent=MS.gene44360.t1 |
| chr5.1 | CDS | 24920964 | 24921039 | 24920964 | ID=cds.MS.gene44360.t1;Parent=MS.gene44360.t1 |
| chr5.1 | exon | 24921208 | 24921312 | 24921208 | ID=MS.gene44360.t1.exon6;Parent=MS.gene44360.t1 |
| chr5.1 | CDS | 24921208 | 24921312 | 24921208 | ID=cds.MS.gene44360.t1;Parent=MS.gene44360.t1 |
| chr5.1 | exon | 24922155 | 24922232 | 24922155 | ID=MS.gene44360.t1.exon7;Parent=MS.gene44360.t1 |
| chr5.1 | CDS | 24922155 | 24922232 | 24922155 | ID=cds.MS.gene44360.t1;Parent=MS.gene44360.t1 |
| Gene Sequence |
| Protein sequence |
