AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene44496

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44496.t1 MTR_4g095360 98.925 372 4 0 1 372 239 610 0.0 745
MS.gene44496.t1 MTR_5g016120 70.241 373 110 1 1 372 244 616 0.0 545
MS.gene44496.t1 MTR_3g102810 69.892 372 112 0 1 372 233 604 0.0 539
MS.gene44496.t1 MTR_1g018510 67.473 372 121 0 1 372 200 571 0.0 531
MS.gene44496.t1 MTR_0047s0120 69.973 373 111 1 1 372 240 612 3.35e-180 519
MS.gene44496.t1 MTR_1g102350 60.800 375 144 2 1 372 259 633 8.53e-169 491
MS.gene44496.t1 MTR_2g042130 62.903 372 138 0 1 372 257 628 8.99e-167 485
MS.gene44496.t1 MTR_8g021130 60.477 377 140 3 1 372 256 628 4.02e-159 466
MS.gene44496.t1 MTR_4g125180 61.126 373 142 3 1 372 236 606 9.16e-153 449
MS.gene44496.t1 MTR_4g073540 58.245 376 152 3 1 372 244 618 4.22e-149 440
MS.gene44496.t1 MTR_8g022870 57.812 384 150 3 1 372 242 625 5.15e-146 432
MS.gene44496.t1 MTR_7g075900 52.941 374 173 2 1 372 255 627 1.27e-133 400
MS.gene44496.t1 MTR_7g098630 53.476 374 168 3 1 372 240 609 1.12e-125 382
MS.gene44496.t1 MTR_4g134320 52.646 378 167 5 4 372 256 630 5.84e-125 378
MS.gene44496.t1 MTR_3g082200 50.398 377 177 5 4 372 119 493 3.43e-123 369
MS.gene44496.t1 MTR_3g082200 50.398 377 177 5 4 372 134 508 5.28e-123 369
MS.gene44496.t1 MTR_3g082200 50.398 377 177 5 4 372 257 631 5.02e-122 370
MS.gene44496.t1 MTR_7g098070 50.265 378 176 5 4 372 252 626 5.23e-118 360
MS.gene44496.t1 MTR_4g103450 45.722 374 197 3 4 372 230 602 1.28e-104 324
MS.gene44496.t1 MTR_4g103480 45.722 374 197 3 4 372 273 645 3.21e-104 324
MS.gene44496.t1 MTR_4g102400 49.602 377 175 8 1 372 245 611 7.78e-104 322
MS.gene44496.t1 MTR_5g055920 46.400 375 193 5 4 372 153 525 1.31e-103 320
MS.gene44496.t1 MTR_5g011340 48.813 379 177 6 1 372 239 607 7.03e-103 320
MS.gene44496.t1 MTR_4g103495 45.358 377 196 3 5 372 107 482 1.36e-102 316
MS.gene44496.t1 MTR_5g011320 48.670 376 181 4 1 372 235 602 1.60e-102 319
MS.gene44496.t1 MTR_4g103490 44.961 387 193 5 4 372 258 642 2.27e-102 320
MS.gene44496.t1 MTR_4g103495 45.358 377 196 3 5 372 256 631 3.15e-101 316
MS.gene44496.t1 MTR_4g103430 44.800 375 198 5 4 372 256 627 5.63e-101 315
MS.gene44496.t1 MTR_5g011280 46.809 376 187 6 1 372 246 612 4.51e-100 313
MS.gene44496.t1 MTR_4g053630 46.277 376 186 8 5 372 146 513 6.93e-100 310
MS.gene44496.t1 MTR_5g011190 48.011 377 183 5 1 372 242 610 7.65e-100 312
MS.gene44496.t1 MTR_7g081750 45.792 404 182 11 4 372 257 658 8.47e-100 313
MS.gene44496.t1 MTR_2g018135 46.354 384 188 7 5 372 261 642 8.56e-100 313
MS.gene44496.t1 MTR_5g011370 48.011 377 183 5 1 372 262 630 1.20e-99 312
MS.gene44496.t1 MTR_4g053630 47.215 377 181 10 5 372 223 590 2.26e-99 310
MS.gene44496.t1 MTR_2g018125 45.855 386 186 8 5 372 263 643 2.69e-99 311
MS.gene44496.t1 MTR_5g011260 47.467 375 185 5 1 372 243 608 3.25e-98 308
MS.gene44496.t1 MTR_5g011310 46.684 377 188 5 1 372 242 610 3.26e-98 308
MS.gene44496.t1 MTR_5g025010 45.026 382 183 10 2 372 214 579 1.26e-97 306
MS.gene44496.t1 MTR_5g025010 45.026 382 183 10 2 372 246 611 3.30e-97 305
MS.gene44496.t1 MTR_4g103400 42.632 380 205 7 4 372 257 634 9.44e-97 305
MS.gene44496.t1 MTR_5g011270 47.467 375 185 5 1 372 243 608 2.84e-96 303
MS.gene44496.t1 MTR_5g096750 42.627 373 200 3 4 372 261 623 4.44e-96 303
MS.gene44496.t1 MTR_4g053635 45.000 380 188 10 2 372 166 533 1.14e-95 299
MS.gene44496.t1 MTR_8g072440 43.008 379 187 9 5 372 212 572 8.32e-95 298
MS.gene44496.t1 MTR_8g072440 42.932 382 189 9 2 372 251 614 2.65e-94 298
MS.gene44496.t1 MTR_5g085690 44.162 394 192 9 4 372 259 649 3.36e-93 295
MS.gene44496.t1 MTR_8g033150 43.236 377 183 10 5 372 225 579 2.23e-89 284
MS.gene44496.t1 MTR_8g033150 43.236 377 183 10 5 372 252 606 4.96e-89 284
MS.gene44496.t1 MTR_7g081500 42.931 389 200 11 4 372 257 643 3.74e-88 282
MS.gene44496.t1 MTR_7g081420 43.077 390 199 11 4 372 258 645 1.61e-87 281
MS.gene44496.t1 MTR_8g079900 42.513 374 190 9 5 372 144 498 1.36e-86 275
MS.gene44496.t1 MTR_8g079900 42.513 374 190 9 5 372 242 596 4.43e-86 276
MS.gene44496.t1 MTR_8g083220 43.421 380 190 9 5 371 266 633 8.37e-86 276
MS.gene44496.t1 MTR_8g042670 43.455 382 192 9 5 372 120 491 2.52e-85 271
MS.gene44496.t1 MTR_3g061110 40.220 363 205 6 18 372 255 613 4.65e-85 273
MS.gene44496.t1 MTR_7g481600 41.432 391 203 10 4 372 258 644 7.17e-85 274
MS.gene44496.t1 MTR_7g081580 40.921 391 205 10 4 372 258 644 8.67e-85 274
MS.gene44496.t1 MTR_8g042670 43.455 382 192 9 5 372 244 615 3.36e-84 271
MS.gene44496.t1 MTR_7g104200 42.933 375 187 9 5 372 240 594 4.83e-83 268
MS.gene44496.t1 MTR_1g078110 40.374 374 207 6 1 372 250 609 4.92e-82 265
MS.gene44496.t1 MTR_7g081380 41.505 412 195 14 4 372 258 666 6.92e-82 266
MS.gene44496.t1 MTR_4g071560 41.576 368 198 8 2 356 178 541 1.26e-81 259
MS.gene44496.t1 MTR_8g024420 42.268 388 186 13 1 372 212 577 1.51e-81 263
MS.gene44496.t1 MTR_8g024380 41.910 377 201 7 1 372 251 614 2.59e-81 264
MS.gene44496.t1 MTR_8g024390 41.818 385 194 11 1 372 246 613 1.73e-80 261
MS.gene44496.t1 MTR_7g079310 41.253 383 200 10 1 372 252 620 8.81e-80 259
MS.gene44496.t1 MTR_7g075890 41.287 373 195 8 5 372 398 751 2.52e-79 261
MS.gene44496.t1 MTR_7g118080 40.369 379 202 8 1 372 250 611 6.71e-79 257
MS.gene44496.t1 MTR_3g104930 41.885 382 201 8 4 372 241 614 3.08e-78 256
MS.gene44496.t1 MTR_7g079300 39.737 380 209 9 1 372 255 622 3.46e-78 256
MS.gene44496.t1 MTR_8g042710 39.683 378 213 7 6 372 248 621 2.38e-77 253
MS.gene44496.t1 MTR_1g079120 40.052 382 203 10 1 372 249 614 5.06e-74 244
MS.gene44496.t1 MTR_3g114420 41.476 393 187 12 4 372 245 618 2.03e-72 240
MS.gene44496.t1 MTR_7g034380 39.474 380 192 10 5 372 194 547 4.98e-72 238
MS.gene44496.t1 MTR_6g055570 39.267 382 189 12 5 372 234 586 5.51e-71 236
MS.gene44496.t1 MTR_8g042710 40.294 340 189 6 6 334 248 584 8.43e-71 234
MS.gene44496.t1 MTR_2g049200 41.579 380 197 9 1 372 250 612 3.20e-70 234
MS.gene44496.t1 MTR_8g005710 37.795 381 197 11 5 372 201 554 1.82e-69 231
MS.gene44496.t1 MTR_1g048110 37.984 387 194 14 2 372 231 587 1.06e-67 227
MS.gene44496.t1 MTR_3g464790 40.318 377 199 7 5 372 225 584 1.69e-67 226
MS.gene44496.t1 MTR_3g114410 42.733 344 175 9 4 334 246 580 2.62e-67 223
MS.gene44496.t1 MTR_8g024370 39.276 387 204 10 1 372 242 612 2.75e-67 226
MS.gene44496.t1 MTR_1g007030 37.143 385 196 12 5 372 234 589 2.43e-66 223
MS.gene44496.t1 MTR_6g055410 37.433 374 189 12 5 372 234 568 1.53e-65 221
MS.gene44496.t1 MTR_1g006990 38.281 384 195 15 5 372 234 591 2.78e-64 218
MS.gene44496.t1 MTR_3g010080 39.276 387 182 16 5 372 233 585 1.59e-62 213
MS.gene44496.t1 MTR_6g075370 38.947 380 146 12 5 372 239 544 4.69e-61 208
MS.gene44496.t1 MTR_8g006680 35.433 381 203 14 2 372 229 576 1.43e-57 199
MS.gene44496.t1 MTR_8g005300 35.433 381 203 14 2 372 229 576 1.43e-57 199
MS.gene44496.t1 MTR_8g005640 35.433 381 203 14 2 372 229 576 1.43e-57 199
MS.gene44496.t1 MTR_2g042650 36.207 348 181 12 30 372 188 499 3.48e-54 189
MS.gene44496.t1 MTR_4g127480 35.934 423 208 16 1 372 267 677 9.33e-53 187
MS.gene44496.t1 MTR_2g037850 35.167 418 218 17 1 372 267 677 1.90e-49 178
MS.gene44496.t1 MTR_2g042640 34.921 378 176 16 5 372 203 520 7.49e-49 174
MS.gene44496.t1 MTR_2g044630 35.294 374 198 16 5 372 227 562 5.86e-48 173
MS.gene44496.t1 MTR_3g452290 33.511 376 183 13 5 372 136 452 1.42e-44 162
MS.gene44496.t1 MTR_3g451220 33.511 376 183 13 5 372 136 452 1.42e-44 162
MS.gene44496.t1 MTR_4g132620 31.731 416 235 12 1 372 267 677 2.72e-44 163
MS.gene44496.t1 MTR_5g081100 36.567 268 138 6 5 263 182 426 1.03e-42 154
MS.gene44496.t1 MTR_8g089230 34.129 419 223 16 1 372 296 708 3.36e-41 154
MS.gene44496.t1 MTR_2g046740 33.810 420 223 17 1 372 288 700 8.29e-39 147
MS.gene44496.t1 MTR_8g027260 39.459 185 91 4 193 372 339 507 3.64e-32 128
MS.gene44496.t1 MTR_8g027260 45.946 111 58 2 5 113 233 343 3.02e-24 104
MS.gene44496.t1 MTR_5g044060 45.522 134 72 1 233 365 3 136 1.05e-30 115
MS.gene44496.t1 MTR_3g114160 48.571 140 68 1 4 139 139 278 1.97e-30 120
MS.gene44496.t1 MTR_5g081280 52.941 102 46 1 2 101 196 297 3.12e-29 115
MS.gene44496.t1 MTR_4g126230 43.151 146 64 3 232 372 44 175 1.35e-27 109
MS.gene44496.t1 MTR_2g070250 31.128 257 148 9 5 259 177 406 1.26e-24 104
MS.gene44496.t1 MTR_7g097250 37.500 160 75 3 161 320 42 176 5.71e-24 97.8
MS.gene44496.t1 MTR_7g079295 49.107 112 56 1 1 112 255 365 8.54e-24 102
MS.gene44496.t1 MTR_4g053665 58.904 73 28 1 262 334 1 71 1.82e-22 94.7
MS.gene44496.t1 MTR_3g114140 38.514 148 82 3 227 372 175 315 6.89e-19 87.8
MS.gene44496.t1 MTR_3g114140 43.089 123 52 3 26 132 63 183 2.14e-18 86.7
MS.gene44496.t1 MTR_3g005755 54.930 71 31 1 293 362 236 306 2.76e-18 84.7
MS.gene44496.t1 MTR_5g011300 45.070 71 38 1 303 373 1 70 8.17e-13 64.3
MS.gene44496.t1 MTR_4g118440 53.846 52 24 0 261 312 1 52 1.06e-12 67.4
MS.gene44496.t1 MTR_2g070260 45.714 70 30 2 303 372 1 62 5.45e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44496.t1 AT5G67360 79.301 372 77 0 1 372 241 612 0.0 608
MS.gene44496.t1 AT2G05920 65.054 372 128 1 1 372 237 606 1.59e-176 509
MS.gene44496.t1 AT5G51750 61.600 375 141 3 1 372 256 630 3.50e-165 481
MS.gene44496.t1 AT3G14067 60.533 375 141 3 1 372 246 616 3.15e-157 461
MS.gene44496.t1 AT3G14240 56.693 381 156 3 1 372 239 619 4.75e-153 450
MS.gene44496.t1 AT4G34980 56.915 376 157 3 1 372 234 608 2.88e-146 432
MS.gene44496.t1 AT1G04110 52.941 374 170 3 1 372 251 620 1.46e-129 390
MS.gene44496.t1 AT2G04160 49.735 378 179 6 4 372 255 630 3.80e-119 363
MS.gene44496.t1 AT5G59810 49.471 378 179 4 4 372 262 636 9.99e-116 354
MS.gene44496.t1 AT1G01900 52.239 335 157 2 1 335 254 585 8.30e-111 341
MS.gene44496.t1 AT5G45650 45.337 386 186 8 5 372 269 647 3.14e-100 314
MS.gene44496.t1 AT5G45650 45.337 386 186 8 5 372 269 647 3.14e-100 314
MS.gene44496.t1 AT5G03620 42.593 378 190 8 5 372 243 603 2.17e-86 277
MS.gene44496.t1 AT5G03620 44.706 340 171 7 5 334 243 575 1.89e-84 267
MS.gene44496.t1 AT1G20160 43.651 378 198 7 5 372 204 576 2.20e-83 268
MS.gene44496.t1 AT1G20160 43.651 378 198 7 5 372 243 615 7.70e-83 268
MS.gene44496.t1 AT5G45640 40.827 387 206 10 2 372 230 609 5.61e-80 260
MS.gene44496.t1 AT5G59120 41.823 373 192 8 5 372 229 581 3.53e-79 257
MS.gene44496.t1 AT5G59090 40.483 373 197 8 5 372 230 582 9.67e-79 256
MS.gene44496.t1 AT5G59090 40.483 373 197 8 5 372 228 580 1.13e-78 256
MS.gene44496.t1 AT1G20150 41.734 369 201 7 5 364 248 611 5.47e-78 255
MS.gene44496.t1 AT5G59090 40.214 373 193 8 5 372 230 577 2.09e-77 253
MS.gene44496.t1 AT4G26330 40.426 376 209 5 5 372 208 576 1.41e-76 251
MS.gene44496.t1 AT5G59190 39.788 377 195 10 5 372 193 546 1.92e-76 249
MS.gene44496.t1 AT4G26330 40.426 376 209 5 5 372 222 590 1.97e-76 250
MS.gene44496.t1 AT1G32940 42.857 392 188 10 2 372 196 572 1.10e-75 248
MS.gene44496.t1 AT1G32940 42.857 392 188 10 2 372 196 572 1.10e-75 248
MS.gene44496.t1 AT1G32940 42.857 392 188 10 2 372 247 623 3.02e-75 248
MS.gene44496.t1 AT1G32960 43.846 390 187 14 2 372 250 626 3.48e-75 248
MS.gene44496.t1 AT1G32970 41.299 385 202 8 2 372 209 583 1.48e-74 245
MS.gene44496.t1 AT1G32950 42.455 391 191 11 2 372 195 571 2.01e-74 244
MS.gene44496.t1 AT5G59100 39.362 376 199 9 5 372 237 591 2.67e-74 244
MS.gene44496.t1 AT3G46850 40.318 377 194 10 5 372 237 591 3.06e-74 244
MS.gene44496.t1 AT4G10510 42.308 390 191 12 2 372 181 555 3.44e-74 244
MS.gene44496.t1 AT4G10510 42.308 390 191 12 2 372 196 570 3.81e-74 244
MS.gene44496.t1 AT1G32950 42.455 391 191 11 2 372 246 622 4.48e-74 244
MS.gene44496.t1 AT4G10510 42.308 390 191 12 2 372 240 614 7.35e-74 244
MS.gene44496.t1 AT4G10510 42.308 390 191 12 2 372 252 626 7.77e-74 244
MS.gene44496.t1 AT5G67090 37.795 381 198 7 1 372 234 584 2.56e-73 242
MS.gene44496.t1 AT3G46840 39.733 375 198 10 5 372 238 591 5.32e-73 241
MS.gene44496.t1 AT5G58830 40.108 369 182 7 5 372 231 561 7.58e-73 240
MS.gene44496.t1 AT4G10520 41.114 377 189 9 6 372 252 605 1.23e-72 241
MS.gene44496.t1 AT4G10540 41.388 389 198 10 2 372 248 624 5.01e-72 239
MS.gene44496.t1 AT4G00230 38.786 379 197 10 5 372 243 597 6.22e-72 238
MS.gene44496.t1 AT5G58840 39.837 369 182 9 5 372 233 562 9.67e-72 237
MS.gene44496.t1 AT4G00230 40.469 341 177 9 5 334 243 568 1.18e-70 232
MS.gene44496.t1 AT5G59130 38.070 373 202 9 5 372 194 542 1.30e-70 234
MS.gene44496.t1 AT5G59130 38.070 373 202 9 5 372 233 581 1.76e-70 234
MS.gene44496.t1 AT5G59130 38.070 373 202 9 5 372 229 577 1.83e-70 234
MS.gene44496.t1 AT1G32940 44.193 353 162 9 2 334 247 584 6.33e-70 230
MS.gene44496.t1 AT4G10550 40.909 396 189 12 2 372 196 571 8.02e-70 232
MS.gene44496.t1 AT4G10550 40.909 396 189 12 2 372 196 571 8.02e-70 232
MS.gene44496.t1 AT4G10550 40.909 396 189 12 2 372 252 627 1.20e-69 233
MS.gene44496.t1 AT4G10550 40.909 396 189 12 2 372 268 643 1.82e-69 233
MS.gene44496.t1 AT5G58820 36.898 374 188 7 5 372 227 558 5.46e-66 222
MS.gene44496.t1 AT4G21650 40.625 384 183 10 2 372 269 620 9.60e-66 222
MS.gene44496.t1 AT5G59130 37.534 373 194 10 5 372 233 571 1.03e-65 221
MS.gene44496.t1 AT1G66220 36.170 376 208 7 2 372 257 605 3.75e-65 220
MS.gene44496.t1 AT1G66210 39.842 379 193 10 2 372 259 610 4.03e-65 220
MS.gene44496.t1 AT5G11940 39.005 382 196 11 2 372 256 611 1.31e-64 219
MS.gene44496.t1 AT5G58840 39.879 331 166 8 5 334 233 531 1.47e-63 212
MS.gene44496.t1 AT4G21630 39.737 380 187 10 2 372 267 613 8.43e-63 214
MS.gene44496.t1 AT4G10530 37.008 381 190 10 6 372 252 596 7.61e-60 206
MS.gene44496.t1 AT4G15040 37.166 374 203 9 6 372 193 541 6.37e-58 200
MS.gene44496.t1 AT4G15040 37.166 374 203 9 6 372 193 541 6.37e-58 200
MS.gene44496.t1 AT4G21640 37.037 378 170 8 2 372 271 587 7.37e-57 197
MS.gene44496.t1 AT4G21326 35.659 387 201 12 2 372 194 548 5.38e-54 189
MS.gene44496.t1 AT4G30020 34.135 416 225 14 1 372 264 674 6.98e-54 190
MS.gene44496.t1 AT4G30020 34.135 416 225 14 1 372 264 674 6.98e-54 190
MS.gene44496.t1 AT4G30020 34.135 416 225 14 1 372 264 674 6.98e-54 190
MS.gene44496.t1 AT4G30020 34.135 416 225 14 1 372 264 674 6.98e-54 190
MS.gene44496.t1 AT2G19170 34.129 419 221 15 1 372 263 673 2.71e-52 186
MS.gene44496.t1 AT2G19170 34.129 419 221 15 1 372 263 673 2.71e-52 186
MS.gene44496.t1 AT4G21323 34.921 378 213 9 2 372 300 651 1.29e-51 184
MS.gene44496.t1 AT1G20160 42.379 269 142 5 5 263 243 508 2.23e-49 174
MS.gene44496.t1 AT1G30600 33.413 416 228 16 1 372 276 686 3.57e-49 177
MS.gene44496.t1 AT1G62340 33.014 418 228 14 1 372 281 692 1.85e-44 164
MS.gene44496.t1 AT2G39850 31.605 405 215 16 5 372 229 608 2.09e-43 160
MS.gene44496.t1 AT4G20430 31.395 430 221 17 1 372 298 711 1.47e-42 159
MS.gene44496.t1 AT4G20430 31.395 430 221 17 1 372 298 711 1.47e-42 159
MS.gene44496.t1 AT4G20430 32.767 412 215 15 1 372 298 687 1.72e-41 155
MS.gene44496.t1 AT5G44530 31.829 421 230 16 1 372 284 696 2.51e-41 155
MS.gene44496.t1 AT5G44530 31.829 421 230 16 1 372 284 696 2.70e-41 155
MS.gene44496.t1 AT5G58840 35.385 260 135 8 5 263 233 460 4.05e-32 126
MS.gene44496.t1 AT5G44530 30.581 327 170 15 1 280 284 600 7.55e-24 103
MS.gene44496.t1 AT1G32980 49.333 75 37 1 299 372 3 77 1.88e-14 71.6

Find 113 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAAATCAAACCAGGATTA+AGG 0.235970 8.1:-25884946 None:intergenic
CGCTATTGACAAAGCTATTT+CGG 0.272079 8.1:+25883914 MS.gene44496:CDS
ACAGCAGCTGGGCTCCATTC+AGG 0.328362 8.1:-25884797 None:intergenic
CCTGTTGCAGCCCTTAATCC+TGG 0.394361 8.1:+25884935 MS.gene44496:CDS
CCAGGATTAAGGGCTGCAAC+AGG 0.395282 8.1:-25884935 None:intergenic
TTATCACCGGAGTTGGTTGC+CGG 0.395823 8.1:+25884290 MS.gene44496:CDS
CCATGATCAAACGGTGTAGA+AGG 0.397156 8.1:-25884896 None:intergenic
TTCAGAGACAGTGTAGCTAT+TGG 0.402314 8.1:+25883987 MS.gene44496:CDS
ATAAATCAAACCAGGATTAA+GGG 0.404634 8.1:-25884945 None:intergenic
AAATTGCAAGACAGCGCAAC+TGG 0.405740 8.1:+25884869 MS.gene44496:CDS
GTGAAAGCAGCCGGAGGATT+GGG 0.406312 8.1:+25884368 MS.gene44496:CDS
TTTAGCTGCTTTGATTAAAT+CGG 0.409903 8.1:+25884769 MS.gene44496:CDS
TTGCTGTTTATAAAGTTTGT+TGG 0.409964 8.1:+25883859 MS.gene44496:CDS
AATGTTCTGTCACTTTCTCT+TGG 0.413004 8.1:+25883945 MS.gene44496:CDS
ATTCTAGTTTCTTGTTCAGC+TGG 0.415966 8.1:+25884035 MS.gene44496:CDS
ATCTGCGGAGTGATCGAATT+AGG 0.421714 8.1:-25884599 None:intergenic
GTGGGATGGCCACACGCGCT+AGG 0.423981 8.1:+25883835 None:intergenic
TCTTGTTCAGCTGGAAATGC+TGG 0.424168 8.1:+25884044 MS.gene44496:CDS
CCTTCTACACCGTTTGATCA+TGG 0.426970 8.1:+25884896 MS.gene44496:CDS
CTGTCACTTTCTCTTGGTGG+TGG 0.430228 8.1:+25883951 MS.gene44496:CDS
GTCACATAATACAATCTTCC+CGG 0.436842 8.1:-25884309 None:intergenic
GAGCTAAACGCCGCGACAAC+CGG 0.441019 8.1:-25884569 None:intergenic
GATTGTGTTTCAAGGAACTA+AGG 0.443790 8.1:+25884529 MS.gene44496:CDS
ACACCTGGTGCTATTAGATC+AGG 0.446419 8.1:-25884629 None:intergenic
AGAGCTGATCTAACAGCAGC+TGG 0.456928 8.1:-25884809 None:intergenic
GTTCTGTCACTTTCTCTTGG+TGG 0.460015 8.1:+25883948 MS.gene44496:CDS
ATCAACGGTAACTGAGACTC+CGG 0.471277 8.1:-25884212 None:intergenic
ATCTTCCCGGCAACCAACTC+CGG 0.477563 8.1:-25884296 None:intergenic
GGTGAAAGCAGCCGGAGGAT+TGG 0.482771 8.1:+25884367 MS.gene44496:CDS
ACACCGTTTGATCATGGATC+AGG 0.486913 8.1:+25884902 MS.gene44496:CDS
ACTGTGAAGATTGTGTTTCA+AGG 0.488094 8.1:+25884521 MS.gene44496:CDS
TCGAAGGCGGTAGGTCCCAC+TGG 0.489985 8.1:+25884671 MS.gene44496:CDS
TTATCGAGGCAACGCTCTAC+CGG 0.492382 8.1:+25884193 MS.gene44496:CDS
TTCCCCGCTTCTGTTAGTCT+CGG 0.496414 8.1:+25884140 MS.gene44496:CDS
CCAGGTGTCAACATCTTAGC+GGG 0.500161 8.1:+25884644 MS.gene44496:CDS
TTAAATCGGCTCATCCTGAA+TGG 0.511286 8.1:+25884783 MS.gene44496:CDS
TATCACCGGAGTTGGTTGCC+GGG 0.515235 8.1:+25884291 MS.gene44496:CDS
GTCGCGGCGTTTAGCTCTCG+TGG 0.521439 8.1:+25884575 MS.gene44496:CDS
GTGACCGTGGGATGAATGCT+AGG 0.525522 8.1:+25884327 MS.gene44496:CDS
TGCGAACGGCGAGGAGCTTG+TGG 0.530472 8.1:+25884412 MS.gene44496:CDS
AATGGGAATTTGTGTATGAC+GGG 0.530961 8.1:+25884263 MS.gene44496:CDS
TATAAAGTTTGTTGGAAAGG+TGG 0.532291 8.1:+25883867 MS.gene44496:CDS
CTTTCACCGACCGCAGTGGC+CGG 0.535638 8.1:-25884452 None:intergenic
GTTTATAAAGTTTGTTGGAA+AGG 0.536571 8.1:+25883864 MS.gene44496:CDS
GGTTGGAGTTGAGCCTTCAC+CGG 0.537581 8.1:+25884550 MS.gene44496:CDS
TTACCGAGACTAACAGAAGC+GGG 0.537688 8.1:-25884143 None:intergenic
TGAAACACAATCTTCACAGT+TGG 0.538010 8.1:-25884518 None:intergenic
CAATGGGAATTTGTGTATGA+CGG 0.545062 8.1:+25884262 MS.gene44496:CDS
GGGAACTTTATCACCGGAGT+TGG 0.546523 8.1:+25884283 MS.gene44496:CDS
TGGGATGGCCACACGCGCTA+GGG 0.546556 8.1:+25883836 None:intergenic
GTGTTTCAAGGAACTAAGGT+TGG 0.547454 8.1:+25884533 MS.gene44496:CDS
GTCTCTCTAATGTTGCTCCA+TGG 0.549761 8.1:+25884081 MS.gene44496:CDS
GCGGGGTGGTCGAAGGCGGT+AGG 0.551449 8.1:+25884662 MS.gene44496:CDS
GGAGCTGTGGTGAAAGCAGC+CGG 0.552954 8.1:+25884359 MS.gene44496:CDS
TGTCCTGATCCATGATCAAA+CGG 0.553240 8.1:-25884905 None:intergenic
GTCAATAGCGGCCAAAATGT+CGG 0.554249 8.1:-25883901 None:intergenic
ATGCTACTAATGCTACCAAT+GGG 0.557072 8.1:+25884246 MS.gene44496:CDS
CATCTTAGCGGGGTGGTCGA+AGG 0.558243 8.1:+25884655 MS.gene44496:CDS
CGTCATACACAAATTCCCAT+TGG 0.561809 8.1:-25884261 None:intergenic
GCATTCCCCGCGTAGATCAA+CGG 0.562491 8.1:-25884227 None:intergenic
TAAACCACTCACATGAGGGC+AGG 0.566983 8.1:-25884750 None:intergenic
CAGTTACCGTTGATCTACGC+GGG 0.568937 8.1:+25884221 MS.gene44496:CDS
TCCGGTGTGTCGCTTTATCG+AGG 0.569825 8.1:+25884179 MS.gene44496:CDS
CTCATCAACGGCTAAGCCAG+TGG 0.574494 8.1:-25884687 None:intergenic
ACTGCGGTCGGTGAAAGAGA+AGG 0.583174 8.1:+25884458 MS.gene44496:CDS
CCCGCTAAGATGTTGACACC+TGG 0.584983 8.1:-25884644 None:intergenic
TGAGCCTTCACCGGTTGTCG+CGG 0.585171 8.1:+25884559 MS.gene44496:CDS
AACGCCGCGACAACCGGTGA+AGG 0.587744 8.1:-25884563 None:intergenic
AGCAGCCGGAGGATTGGGTA+TGG 0.588157 8.1:+25884373 MS.gene44496:CDS
ATCTACACGTCTCTCATCAA+CGG 0.590742 8.1:-25884699 None:intergenic
GCACCCACTGTAGTAATCCA+TGG 0.594833 8.1:-25884098 None:intergenic
AATGCTACTAATGCTACCAA+TGG 0.594909 8.1:+25884245 MS.gene44496:CDS
AAGCCTGATCTAATAGCACC+AGG 0.599017 8.1:+25884626 MS.gene44496:CDS
GAAATCACGATCAAGAGTAC+CGG 0.599790 8.1:-25884120 None:intergenic
CAGAACCATACCCAATCCTC+CGG 0.602588 8.1:-25884378 None:intergenic
ACCAGGTGTCAACATCTTAG+CGG 0.603711 8.1:+25884643 MS.gene44496:CDS
AACAGCAACCCTAGCGCGTG+TGG 0.605228 8.1:-25883844 None:intergenic
CTGAGCAACACAGCTGCGAA+CGG 0.606195 8.1:+25884398 MS.gene44496:CDS
ACTCACATGAGGGCAGGACA+TGG 0.609545 8.1:-25884744 None:intergenic
TTCTCTTTCACCGACCGCAG+TGG 0.611973 8.1:-25884456 None:intergenic
ATGTCCTGCCCTCATGTGAG+TGG 0.615120 8.1:+25884746 MS.gene44496:CDS
CGAAATAGCTTTGTCAATAG+CGG 0.616643 8.1:-25883913 None:intergenic
TGGATTACTACAGTGGGTGC+CGG 0.617440 8.1:+25884101 MS.gene44496:CDS
CTTAGCGGGGTGGTCGAAGG+CGG 0.620062 8.1:+25884658 MS.gene44496:CDS
GCAGCTAAACCACTCACATG+AGG 0.620549 8.1:-25884755 None:intergenic
TTAGAGAGACTATAAGCACT+TGG 0.620602 8.1:-25884068 None:intergenic
AAGATTGTATTATGTGACCG+TGG 0.629392 8.1:+25884314 MS.gene44496:CDS
GAACCCTAGCATTCATCCCA+CGG 0.633302 8.1:-25884331 None:intergenic
CAGCTAAACCACTCACATGA+GGG 0.633909 8.1:-25884754 None:intergenic
ATGAATGCTAGGGTTCAGAA+AGG 0.634560 8.1:+25884338 MS.gene44496:CDS
GAACGGCGAGGAGCTTGTGG+CGG 0.639443 8.1:+25884415 MS.gene44496:CDS
CAGGATTAAGGGCTGCAACA+GGG 0.640306 8.1:-25884934 None:intergenic
GAGCTGATCTAACAGCAGCT+GGG 0.644374 8.1:-25884808 None:intergenic
TCATCAACGGCTAAGCCAGT+GGG 0.646405 8.1:-25884686 None:intergenic
CAACACAGCTGCGAACGGCG+AGG 0.648782 8.1:+25884403 MS.gene44496:CDS
GCTTCTGTTAGTCTCGGTAA+CGG 0.648843 8.1:+25884146 MS.gene44496:CDS
TATGACGGGAACTTTATCAC+CGG 0.649867 8.1:+25884277 MS.gene44496:CDS
AGATCAGGCTTCAAGATCTG+CGG 0.655489 8.1:-25884614 None:intergenic
GCTCCATGGATTACTACAGT+GGG 0.656607 8.1:+25884095 MS.gene44496:CDS
GCCTCGATAAAGCGACACAC+CGG 0.657438 8.1:-25884180 None:intergenic
TGACCGTGGGATGAATGCTA+GGG 0.663627 8.1:+25884328 MS.gene44496:CDS
GTGTCAACATCTTAGCGGGG+TGG 0.670928 8.1:+25884648 MS.gene44496:CDS
TAGGGTTCAGAAAGGAGCTG+TGG 0.676691 8.1:+25884346 MS.gene44496:CDS
TGATCATGGATCAGGACACG+TGG 0.680005 8.1:+25884910 MS.gene44496:CDS
AGATTGTATTATGTGACCGT+GGG 0.680159 8.1:+25884315 MS.gene44496:CDS
GGTAACGGACTTAACTACTC+CGG 0.682480 8.1:+25884161 MS.gene44496:CDS
GCTGTGGTGAAAGCAGCCGG+AGG 0.686873 8.1:+25884362 MS.gene44496:CDS
TGCTCCATGGATTACTACAG+TGG 0.688244 8.1:+25884094 MS.gene44496:CDS
TACCGAGACTAACAGAAGCG+GGG 0.703744 8.1:-25884142 None:intergenic
AGTTACCGTTGATCTACGCG+GGG 0.711819 8.1:+25884222 MS.gene44496:CDS
TCAGTTACCGTTGATCTACG+CGG 0.711980 8.1:+25884220 MS.gene44496:CDS
GTTACCGAGACTAACAGAAG+CGG 0.712723 8.1:-25884144 None:intergenic
CAGGTGTCAACATCTTAGCG+GGG 0.747665 8.1:+25884645 MS.gene44496:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATAAAACCATTTTAGTAT+AGG + chr8.1:25885434-25885453 MS.gene44496:intron 15.0%
!! TTCAAAGAATGTGAAAATAA+CGG + chr8.1:25885213-25885232 MS.gene44496:intron 20.0%
!!! TTTGATTTATGATTTAACAG+CGG + chr8.1:25884958-25884977 MS.gene44496:intron 20.0%
! ATAAATCAAACCAGGATTAA+GGG - chr8.1:25884948-25884967 None:intergenic 25.0%
! GTTAAATCATAAATCAAACC+AGG - chr8.1:25884956-25884975 None:intergenic 25.0%
! TTGATCAACCTATACTAAAA+TGG - chr8.1:25885445-25885464 None:intergenic 25.0%
!! TTTAGCTGCTTTGATTAAAT+CGG + chr8.1:25884769-25884788 MS.gene44496:CDS 25.0%
!!! GTAGATTTTAACATTATCTC+TGG + chr8.1:25884716-25884735 MS.gene44496:CDS 25.0%
!!! GTTTATAAAGTTTGTTGGAA+AGG + chr8.1:25883864-25883883 MS.gene44496:CDS 25.0%
!!! TTGCTGTTTATAAAGTTTGT+TGG + chr8.1:25883859-25883878 MS.gene44496:CDS 25.0%
!!! TTTTAGTATAGGTTGATCAA+AGG + chr8.1:25885445-25885464 MS.gene44496:intron 25.0%
AATCCCAACTAATCGAAATT+GGG - chr8.1:25885378-25885397 None:intergenic 30.0%
CATAAATCAAACCAGGATTA+AGG - chr8.1:25884949-25884968 None:intergenic 30.0%
TAATCCCAACTAATCGAAAT+TGG - chr8.1:25885379-25885398 None:intergenic 30.0%
TACTGTAACGTTTACTTCTT+CGG + chr8.1:25885282-25885301 MS.gene44496:intron 30.0%
! TCTTAATTACCCTTCTTTTG+CGG + chr8.1:25885090-25885109 MS.gene44496:intron 30.0%
!! TATAAAGTTTGTTGGAAAGG+TGG + chr8.1:25883867-25883886 MS.gene44496:CDS 30.0%
!! TCTTTGAAACTTAACTCTTC+AGG - chr8.1:25885244-25885263 None:intergenic 30.0%
!!! TTGTTTTAGTTCCGACATTT+TGG + chr8.1:25883890-25883909 MS.gene44496:CDS 30.0%
AAGATTGTATTATGTGACCG+TGG + chr8.1:25884314-25884333 MS.gene44496:CDS 35.0%
AATGCTACTAATGCTACCAA+TGG + chr8.1:25884245-25884264 MS.gene44496:CDS 35.0%
AATGGGAATTTGTGTATGAC+GGG + chr8.1:25884263-25884282 MS.gene44496:CDS 35.0%
ACTGTAACGTTTACTTCTTC+GGG + chr8.1:25885283-25885302 MS.gene44496:intron 35.0%
ACTGTGAAGATTGTGTTTCA+AGG + chr8.1:25884521-25884540 MS.gene44496:CDS 35.0%
AGATTGTATTATGTGACCGT+GGG + chr8.1:25884315-25884334 MS.gene44496:CDS 35.0%
AGCAACACAAATCACATCTT+TGG + chr8.1:25885018-25885037 MS.gene44496:intron 35.0%
ATACAAGGCTTCTGTAACAT+CGG + chr8.1:25885189-25885208 MS.gene44496:intron 35.0%
ATGCTACTAATGCTACCAAT+GGG + chr8.1:25884246-25884265 MS.gene44496:CDS 35.0%
CAAAAACAACCGCAAAAGAA+GGG - chr8.1:25885102-25885121 None:intergenic 35.0%
CAATGGGAATTTGTGTATGA+CGG + chr8.1:25884262-25884281 MS.gene44496:CDS 35.0%
CGCTATTGACAAAGCTATTT+CGG + chr8.1:25883914-25883933 MS.gene44496:CDS 35.0%
GATTGTGTTTCAAGGAACTA+AGG + chr8.1:25884529-25884548 MS.gene44496:CDS 35.0%
GCTTACACAGCTTACAAAAA+CGG + chr8.1:25884842-25884861 MS.gene44496:CDS 35.0%
GTCACATAATACAATCTTCC+CGG - chr8.1:25884312-25884331 None:intergenic 35.0%
TCAAAAACAACCGCAAAAGA+AGG - chr8.1:25885103-25885122 None:intergenic 35.0%
TGAAACACAATCTTCACAGT+TGG - chr8.1:25884521-25884540 None:intergenic 35.0%
TTAACAGCGGATGATTATCT+AGG + chr8.1:25884971-25884990 MS.gene44496:intron 35.0%
TTAGAGAGACTATAAGCACT+TGG - chr8.1:25884071-25884090 None:intergenic 35.0%
! AAGCCCAATTTCGATTAGTT+GGG + chr8.1:25885372-25885391 MS.gene44496:intron 35.0%
!! AATGTTCTGTCACTTTCTCT+TGG + chr8.1:25883945-25883964 MS.gene44496:CDS 35.0%
!! ATTCTAGTTTCTTGTTCAGC+TGG + chr8.1:25884035-25884054 MS.gene44496:CDS 35.0%
!! CGAAATAGCTTTGTCAATAG+CGG - chr8.1:25883916-25883935 None:intergenic 35.0%
!!! CAAGAAGTACTTATTTTCCG+AGG + chr8.1:25884490-25884509 MS.gene44496:CDS 35.0%
!!! TATTGGTGCTTTTTCTGCAA+TGG + chr8.1:25884004-25884023 MS.gene44496:CDS 35.0%
!!! TTGTTTTTGATACCATGGGT+GGG + chr8.1:25885113-25885132 MS.gene44496:intron 35.0%
AAACCCATTCAACTTCTGAG+GGG - chr8.1:25885314-25885333 None:intergenic 40.0%
AAGAAAATTCCAGTGTGACG+CGG + chr8.1:25885045-25885064 MS.gene44496:intron 40.0%
ACTAATGGAAAGAACGTGGT+TGG + chr8.1:25885349-25885368 MS.gene44496:intron 40.0%
ATCTACACGTCTCTCATCAA+CGG - chr8.1:25884702-25884721 None:intergenic 40.0%
ATGAATGCTAGGGTTCAGAA+AGG + chr8.1:25884338-25884357 MS.gene44496:CDS 40.0%
CAAACCCATTCAACTTCTGA+GGG - chr8.1:25885315-25885334 None:intergenic 40.0%
CGTCATACACAAATTCCCAT+TGG - chr8.1:25884264-25884283 None:intergenic 40.0%
GAAGCCCAATTTCGATTAGT+TGG + chr8.1:25885371-25885390 MS.gene44496:intron 40.0%
GTGTTTCAAGGAACTAAGGT+TGG + chr8.1:25884533-25884552 MS.gene44496:CDS 40.0%
TGTCCTGATCCATGATCAAA+CGG - chr8.1:25884908-25884927 None:intergenic 40.0%
TTCAGAGACAGTGTAGCTAT+TGG + chr8.1:25883987-25884006 MS.gene44496:CDS 40.0%
! AGAAGTTGAATGGGTTTGGA+AGG + chr8.1:25885317-25885336 MS.gene44496:intron 40.0%
! ATGGACTAATGGAAAGAACG+TGG + chr8.1:25885345-25885364 MS.gene44496:intron 40.0%
! GAAATCACGATCAAGAGTAC+CGG - chr8.1:25884123-25884142 None:intergenic 40.0%
! TATGACGGGAACTTTATCAC+CGG + chr8.1:25884277-25884296 MS.gene44496:CDS 40.0%
! TTAAATCGGCTCATCCTGAA+TGG + chr8.1:25884783-25884802 MS.gene44496:CDS 40.0%
!! GCTTTTTCTGCAATGGAGAA+AGG + chr8.1:25884011-25884030 MS.gene44496:CDS 40.0%
!! TGTTTTTGATACCATGGGTG+GGG + chr8.1:25885114-25885133 MS.gene44496:intron 40.0%
!!! GCGGTTGTTTTTGATACCAT+GGG + chr8.1:25885109-25885128 MS.gene44496:intron 40.0%
!!! GTTGTTTTTGATACCATGGG+TGG + chr8.1:25885112-25885131 MS.gene44496:intron 40.0%
!!! TGCGGTTGTTTTTGATACCA+TGG + chr8.1:25885108-25885127 MS.gene44496:intron 40.0%
AAATTGCAAGACAGCGCAAC+TGG + chr8.1:25884869-25884888 MS.gene44496:CDS 45.0%
AAGCCTGATCTAATAGCACC+AGG + chr8.1:25884626-25884645 MS.gene44496:CDS 45.0%
ACACCGTTTGATCATGGATC+AGG + chr8.1:25884902-25884921 MS.gene44496:CDS 45.0%
ACCAGGTGTCAACATCTTAG+CGG + chr8.1:25884643-25884662 MS.gene44496:CDS 45.0%
ACGAGAATCCTCACAAACGT+GGG + chr8.1:25885154-25885173 MS.gene44496:intron 45.0%
AGAAAATTCCAGTGTGACGC+GGG + chr8.1:25885046-25885065 MS.gene44496:intron 45.0%
AGATCAGGCTTCAAGATCTG+CGG - chr8.1:25884617-25884636 None:intergenic 45.0%
ATCAACGGTAACTGAGACTC+CGG - chr8.1:25884215-25884234 None:intergenic 45.0%
ATCTGCGGAGTGATCGAATT+AGG - chr8.1:25884602-25884621 None:intergenic 45.0%
ATGGGTTTGGAAGGTTGGAA+TGG + chr8.1:25885326-25885345 MS.gene44496:intron 45.0%
CAGCTAAACCACTCACATGA+GGG - chr8.1:25884757-25884776 None:intergenic 45.0%
CCAAACCCATTCAACTTCTG+AGG - chr8.1:25885316-25885335 None:intergenic 45.0%
CCATGATCAAACGGTGTAGA+AGG - chr8.1:25884899-25884918 None:intergenic 45.0%
CCTTCTACACCGTTTGATCA+TGG + chr8.1:25884896-25884915 MS.gene44496:CDS 45.0%
GTCAATAGCGGCCAAAATGT+CGG - chr8.1:25883904-25883923 None:intergenic 45.0%
GTCTCTCTAATGTTGCTCCA+TGG + chr8.1:25884081-25884100 MS.gene44496:CDS 45.0%
GTTACCGAGACTAACAGAAG+CGG - chr8.1:25884147-25884166 None:intergenic 45.0%
GTTCATCACTTGCTCGAAGA+GGG + chr8.1:25885467-25885486 MS.gene44496:intron 45.0%
TCAGTTACCGTTGATCTACG+CGG + chr8.1:25884220-25884239 MS.gene44496:CDS 45.0%
TCTCGTGTGTTTGACTACGT+TGG - chr8.1:25885140-25885159 None:intergenic 45.0%
TCTTGTTCAGCTGGAAATGC+TGG + chr8.1:25884044-25884063 MS.gene44496:CDS 45.0%
TTACCGAGACTAACAGAAGC+GGG - chr8.1:25884146-25884165 None:intergenic 45.0%
TTCATCACTTGCTCGAAGAG+GGG + chr8.1:25885468-25885487 MS.gene44496:intron 45.0%
! AGAAGCCTTGTATGTACCTG+CGG - chr8.1:25885182-25885201 None:intergenic 45.0%
! CCTCAGAAGTTGAATGGGTT+TGG + chr8.1:25885313-25885332 MS.gene44496:intron 45.0%
! GCTCCATGGATTACTACAGT+GGG + chr8.1:25884095-25884114 MS.gene44496:CDS 45.0%
! GCTTCTGTTAGTCTCGGTAA+CGG + chr8.1:25884146-25884165 MS.gene44496:CDS 45.0%
! GGCGGATACTCATCTTTTAC+CGG + chr8.1:25884433-25884452 MS.gene44496:CDS 45.0%
! GTTGAATGGGTTTGGAAGGT+TGG + chr8.1:25885321-25885340 MS.gene44496:intron 45.0%
! TGCTCCATGGATTACTACAG+TGG + chr8.1:25884094-25884113 MS.gene44496:CDS 45.0%
!! ACACCTGGTGCTATTAGATC+AGG - chr8.1:25884632-25884651 None:intergenic 45.0%
!! GGAAGGTTGGAATGGACTAA+TGG + chr8.1:25885334-25885353 MS.gene44496:intron 45.0%
!! GGTAACGGACTTAACTACTC+CGG + chr8.1:25884161-25884180 MS.gene44496:CDS 45.0%
!! GTTCTGTCACTTTCTCTTGG+TGG + chr8.1:25883948-25883967 MS.gene44496:CDS 45.0%
!!! ATTTTTTACCCGCGTCACAC+TGG - chr8.1:25885057-25885076 None:intergenic 45.0%
!!! CTTCACAGTTGGTTTTGCCT+CGG - chr8.1:25884510-25884529 None:intergenic 45.0%
AGAGCTGATCTAACAGCAGC+TGG - chr8.1:25884812-25884831 None:intergenic 50.0%
AGTTACCGTTGATCTACGCG+GGG + chr8.1:25884222-25884241 MS.gene44496:CDS 50.0%
CACGAGAATCCTCACAAACG+TGG + chr8.1:25885153-25885172 MS.gene44496:intron 50.0%
CAGAACCATACCCAATCCTC+CGG - chr8.1:25884381-25884400 None:intergenic 50.0%
CAGGATTAAGGGCTGCAACA+GGG - chr8.1:25884937-25884956 None:intergenic 50.0%
CAGGTGTCAACATCTTAGCG+GGG + chr8.1:25884645-25884664 MS.gene44496:CDS 50.0%
CAGTTACCGTTGATCTACGC+GGG + chr8.1:25884221-25884240 MS.gene44496:CDS 50.0%
CCAGGTGTCAACATCTTAGC+GGG + chr8.1:25884644-25884663 MS.gene44496:CDS 50.0%
CGACCCCTCAGAAGTTGAAT+GGG + chr8.1:25885308-25885327 MS.gene44496:intron 50.0%
GAACCCTAGCATTCATCCCA+CGG - chr8.1:25884334-25884353 None:intergenic 50.0%
GAGCTGATCTAACAGCAGCT+GGG - chr8.1:25884811-25884830 None:intergenic 50.0%
GCACCCACTGTAGTAATCCA+TGG - chr8.1:25884101-25884120 None:intergenic 50.0%
GCAGCTAAACCACTCACATG+AGG - chr8.1:25884758-25884777 None:intergenic 50.0%
GGGAACTTTATCACCGGAGT+TGG + chr8.1:25884283-25884302 MS.gene44496:CDS 50.0%
GGTTCATCACTTGCTCGAAG+AGG + chr8.1:25885466-25885485 MS.gene44496:intron 50.0%
TAAACCACTCACATGAGGGC+AGG - chr8.1:25884753-25884772 None:intergenic 50.0%
TACCGAGACTAACAGAAGCG+GGG - chr8.1:25884145-25884164 None:intergenic 50.0%
TAGGGTTCAGAAAGGAGCTG+TGG + chr8.1:25884346-25884365 MS.gene44496:CDS 50.0%
TCATCAACGGCTAAGCCAGT+GGG - chr8.1:25884689-25884708 None:intergenic 50.0%
TCGACCCCTCAGAAGTTGAA+TGG + chr8.1:25885307-25885326 MS.gene44496:intron 50.0%
TGACCGTGGGATGAATGCTA+GGG + chr8.1:25884328-25884347 MS.gene44496:CDS 50.0%
TGATCATGGATCAGGACACG+TGG + chr8.1:25884910-25884929 MS.gene44496:CDS 50.0%
TGGATTACTACAGTGGGTGC+CGG + chr8.1:25884101-25884120 MS.gene44496:CDS 50.0%
TTATCGAGGCAACGCTCTAC+CGG + chr8.1:25884193-25884212 MS.gene44496:CDS 50.0%
! GAAGAGGGGTGTGTCTTGAT+TGG + chr8.1:25885482-25885501 MS.gene44496:intron 50.0%
! GAAGCCTTGTATGTACCTGC+GGG - chr8.1:25885181-25885200 None:intergenic 50.0%
! TCATCTTTTACCGGCCACTG+CGG + chr8.1:25884442-25884461 MS.gene44496:CDS 50.0%
! TTATCACCGGAGTTGGTTGC+CGG + chr8.1:25884290-25884309 MS.gene44496:CDS 50.0%
! TTCCCCGCTTCTGTTAGTCT+CGG + chr8.1:25884140-25884159 MS.gene44496:CDS 50.0%
!! CTGTCACTTTCTCTTGGTGG+TGG + chr8.1:25883951-25883970 MS.gene44496:CDS 50.0%
ACTCACATGAGGGCAGGACA+TGG - chr8.1:25884747-25884766 None:intergenic 55.0%
ACTGCGGTCGGTGAAAGAGA+AGG + chr8.1:25884458-25884477 MS.gene44496:CDS 55.0%
ATCTTCCCGGCAACCAACTC+CGG - chr8.1:25884299-25884318 None:intergenic 55.0%
ATGTCCTGCCCTCATGTGAG+TGG + chr8.1:25884746-25884765 MS.gene44496:CDS 55.0%
CCAGGATTAAGGGCTGCAAC+AGG - chr8.1:25884938-25884957 None:intergenic 55.0%
CCCGCTAAGATGTTGACACC+TGG - chr8.1:25884647-25884666 None:intergenic 55.0%
CCTGTTGCAGCCCTTAATCC+TGG + chr8.1:25884935-25884954 MS.gene44496:CDS 55.0%
CTCATCAACGGCTAAGCCAG+TGG - chr8.1:25884690-25884709 None:intergenic 55.0%
CTGAGCAACACAGCTGCGAA+CGG + chr8.1:25884398-25884417 MS.gene44496:CDS 55.0%
GCATTCCCCGCGTAGATCAA+CGG - chr8.1:25884230-25884249 None:intergenic 55.0%
GCCTCGATAAAGCGACACAC+CGG - chr8.1:25884183-25884202 None:intergenic 55.0%
GGTTGGAGTTGAGCCTTCAC+CGG + chr8.1:25884550-25884569 MS.gene44496:CDS 55.0%
GTGAAAGCAGCCGGAGGATT+GGG + chr8.1:25884368-25884387 MS.gene44496:CDS 55.0%
GTGACCGTGGGATGAATGCT+AGG + chr8.1:25884327-25884346 MS.gene44496:CDS 55.0%
GTGTCAACATCTTAGCGGGG+TGG + chr8.1:25884648-25884667 MS.gene44496:CDS 55.0%
TTCTCTTTCACCGACCGCAG+TGG - chr8.1:25884459-25884478 None:intergenic 55.0%
! TATCACCGGAGTTGGTTGCC+GGG + chr8.1:25884291-25884310 MS.gene44496:CDS 55.0%
!! TCCGGTGTGTCGCTTTATCG+AGG + chr8.1:25884179-25884198 MS.gene44496:CDS 55.0%
AACAGCAACCCTAGCGCGTG+TGG - chr8.1:25883847-25883866 None:intergenic 60.0%
ACAGCAGCTGGGCTCCATTC+AGG - chr8.1:25884800-25884819 None:intergenic 60.0%
AGCAGCCGGAGGATTGGGTA+TGG + chr8.1:25884373-25884392 MS.gene44496:CDS 60.0%
CATCTTAGCGGGGTGGTCGA+AGG + chr8.1:25884655-25884674 MS.gene44496:CDS 60.0%
GAGCTAAACGCCGCGACAAC+CGG - chr8.1:25884572-25884591 None:intergenic 60.0%
GGAGCTGTGGTGAAAGCAGC+CGG + chr8.1:25884359-25884378 MS.gene44496:CDS 60.0%
GGGACCCGCAGGTACATACA+AGG + chr8.1:25885174-25885193 MS.gene44496:intron 60.0%
GGTGAAAGCAGCCGGAGGAT+TGG + chr8.1:25884367-25884386 MS.gene44496:CDS 60.0%
! CTTTTACCGGCCACTGCGGT+CGG + chr8.1:25884446-25884465 MS.gene44496:CDS 60.0%
! TGAGCCTTCACCGGTTGTCG+CGG + chr8.1:25884559-25884578 MS.gene44496:CDS 60.0%
AACGCCGCGACAACCGGTGA+AGG - chr8.1:25884566-25884585 None:intergenic 65.0%
CAACACAGCTGCGAACGGCG+AGG + chr8.1:25884403-25884422 MS.gene44496:CDS 65.0%
CTCACAAACGTGGGACCCGC+AGG + chr8.1:25885163-25885182 MS.gene44496:intron 65.0%
CTGCGGGTCCCACGTTTGTG+AGG - chr8.1:25885165-25885184 None:intergenic 65.0%
CTTAGCGGGGTGGTCGAAGG+CGG + chr8.1:25884658-25884677 MS.gene44496:CDS 65.0%
CTTTCACCGACCGCAGTGGC+CGG - chr8.1:25884455-25884474 None:intergenic 65.0%
GAACGGCGAGGAGCTTGTGG+CGG + chr8.1:25884415-25884434 MS.gene44496:CDS 65.0%
GACTACGTTGGCCCCACCCA+TGG - chr8.1:25885128-25885147 None:intergenic 65.0%
GCTGTGGTGAAAGCAGCCGG+AGG + chr8.1:25884362-25884381 MS.gene44496:CDS 65.0%
TCGAAGGCGGTAGGTCCCAC+TGG + chr8.1:25884671-25884690 MS.gene44496:CDS 65.0%
TGCGAACGGCGAGGAGCTTG+TGG + chr8.1:25884412-25884431 MS.gene44496:CDS 65.0%
!! GTCGCGGCGTTTAGCTCTCG+TGG + chr8.1:25884575-25884594 MS.gene44496:CDS 65.0%
GCGGGGTGGTCGAAGGCGGT+AGG + chr8.1:25884662-25884681 MS.gene44496:CDS 75.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 25883840 25885576 25883840 ID=MS.gene44496
chr8.1 mRNA 25883840 25885576 25883840 ID=MS.gene44496.t1;Parent=MS.gene44496
chr8.1 exon 25883840 25884956 25883840 ID=MS.gene44496.t1.exon1;Parent=MS.gene44496.t1
chr8.1 CDS 25883840 25884956 25883840 ID=cds.MS.gene44496.t1;Parent=MS.gene44496.t1
chr8.1 exon 25885572 25885576 25885572 ID=MS.gene44496.t1.exon2;Parent=MS.gene44496.t1
chr8.1 CDS 25885572 25885576 25885572 ID=cds.MS.gene44496.t1;Parent=MS.gene44496.t1
Gene Sequence

>MS.gene44496

ATGGCCACACGCGCTAGGGTTGCTGTTTATAAAGTTTGTTGGAAAGGTGGTTGTTTTAGTTCCGACATTTTGGCCGCTATTGACAAAGCTATTTCGGACAACGTTAATGTTCTGTCACTTTCTCTTGGTGGTGGAATGTCTGATTATTTCAGAGACAGTGTAGCTATTGGTGCTTTTTCTGCAATGGAGAAAGGAATTCTAGTTTCTTGTTCAGCTGGAAATGCTGGTCCAAGTGCTTATAGTCTCTCTAATGTTGCTCCATGGATTACTACAGTGGGTGCCGGTACTCTTGATCGTGATTTCCCCGCTTCTGTTAGTCTCGGTAACGGACTTAACTACTCCGGTGTGTCGCTTTATCGAGGCAACGCTCTACCGGAGTCTCAGTTACCGTTGATCTACGCGGGGAATGCTACTAATGCTACCAATGGGAATTTGTGTATGACGGGAACTTTATCACCGGAGTTGGTTGCCGGGAAGATTGTATTATGTGACCGTGGGATGAATGCTAGGGTTCAGAAAGGAGCTGTGGTGAAAGCAGCCGGAGGATTGGGTATGGTTCTGAGCAACACAGCTGCGAACGGCGAGGAGCTTGTGGCGGATACTCATCTTTTACCGGCCACTGCGGTCGGTGAAAGAGAAGGCAATGCAATCAAGAAGTACTTATTTTCCGAGGCAAAACCAACTGTGAAGATTGTGTTTCAAGGAACTAAGGTTGGAGTTGAGCCTTCACCGGTTGTCGCGGCGTTTAGCTCTCGTGGACCTAATTCGATCACTCCGCAGATCTTGAAGCCTGATCTAATAGCACCAGGTGTCAACATCTTAGCGGGGTGGTCGAAGGCGGTAGGTCCCACTGGCTTAGCCGTTGATGAGAGACGTGTAGATTTTAACATTATCTCTGGTACATCCATGTCCTGCCCTCATGTGAGTGGTTTAGCTGCTTTGATTAAATCGGCTCATCCTGAATGGAGCCCAGCTGCTGTTAGATCAGCTCTCATGACAACAGCTTACACAGCTTACAAAAACGGCAACAAATTGCAAGACAGCGCAACTGGAAAACCTTCTACACCGTTTGATCATGGATCAGGACACGTGGACCCTGTTGCAGCCCTTAATCCTGGTTTGATTTATGATTTAACAGCGGATGATTATCTAGGTTTTCTATGTGCTTTAAACTACACAGCAACACAAATCACATCTTTGGCAAGAAGAAAATTCCAGTGTGACGCGGGTAAAAAATACAGTGTGTCTGATCTTAATTACCCTTCTTTTGCGGTTGTTTTTGATACCATGGGTGGGGCCAACGTAGTCAAACACACGAGAATCCTCACAAACGTGGGACCCGCAGGTACATACAAGGCTTCTGTAACATCGGATTCAAAGAATGTGAAAATAACGGTTGAGCCTGAAGAGTTAAGTTTCAAAGAAAATGAGAAGAAAAGTTTTACTGTAACGTTTACTTCTTCGGGTTCGACCCCTCAGAAGTTGAATGGGTTTGGAAGGTTGGAATGGACTAATGGAAAGAACGTGGTTGGAAGCCCAATTTCGATTAGTTGGGATTAATTTAATTATTATTATTATTATTATTATGAAACATTAATAAAACCATTTTAGTATAGGTTGATCAAAGGTTCATCACTTGCTCGAAGAGGGGTGTGTCTTGATTGGCTATTTATTATGTATTTTTATTTTGTTATATAGTATTTGAATTTGCAAAGAAAATGTGTTTATTCAGCTTGA
Protein sequence

>MS.gene44496.t1

MATRARVAVYKVCWKGGCFSSDILAAIDKAISDNVNVLSLSLGGGMSDYFRDSVAIGAFSAMEKGILVSCSAGNAGPSAYSLSNVAPWITTVGAGTLDRDFPASVSLGNGLNYSGVSLYRGNALPESQLPLIYAGNATNATNGNLCMTGTLSPELVAGKIVLCDRGMNARVQKGAVVKAAGGLGMVLSNTAANGEELVADTHLLPATAVGEREGNAIKKYLFSEAKPTVKIVFQGTKVGVEPSPVVAAFSSRGPNSITPQILKPDLIAPGVNILAGWSKAVGPTGLAVDERRVDFNIISGTSMSCPHVSGLAALIKSAHPEWSPAAVRSALMTTAYTAYKNGNKLQDSATGKPSTPFDHGSGHVDPVAALNPA