AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052494


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052494.t1 MTR_4g088980 97.386 306 7 1 1 305 1 306 0.0 609
MS.gene052494.t1 MTR_2g013220 68.771 301 82 5 9 305 21 313 2.18e-123 355
MS.gene052494.t1 MTR_8g098515 51.084 323 119 8 14 305 32 346 1.46e-73 230
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052494.t1 AT2G20760 52.303 304 119 8 21 301 22 322 4.69e-72 226
MS.gene052494.t1 AT2G40060 55.760 217 85 4 28 237 16 228 1.29e-66 209
MS.gene052494.t1 AT3G51890 62.264 159 57 1 87 245 85 240 5.37e-59 190

Find 105 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATCCTTTGGTTGTGATTC+AGG 0.112857 4.3:-23974229 None:intergenic
GTTTGCCTGGCTTTGGGCCT+TGG 0.150519 4.3:-23974027 None:intergenic
CGGAGGAAGGTAACGTTCTT+AGG 0.196876 4.3:+23971708 MS.gene052494:CDS
CGGTGGGTTTGCCTGGCTTT+GGG 0.248540 4.3:-23974033 None:intergenic
GCAAACCCACCGACCTTTCT+AGG 0.257216 4.3:+23974044 MS.gene052494:CDS
TCGGTGGGTTTGCCTGGCTT+TGG 0.260717 4.3:-23974034 None:intergenic
CCGAATACATCCGGAGATTC+CGG 0.326239 4.3:-23971542 None:intergenic
TTTGTGAAAATTCTCTTGAT+TGG 0.330165 4.3:-23973888 None:intergenic
GGCGACGACGACAACTATTC+TGG 0.330828 4.3:+23971458 MS.gene052494:CDS
TGAATCTACAGTACCGTTAT+TGG 0.331003 4.3:-23974254 None:intergenic
GGTGCTGATCCATTTGGTTT+AGG 0.333375 4.3:-23974196 None:intergenic
TGAGAAGAAAAGAGGCAAAA+AGG 0.365407 4.3:+23973973 MS.gene052494:CDS
AAAATTACTGGAAAGCAATT+GGG 0.366531 4.3:+23973921 MS.gene052494:CDS
ATGGAAAACGGAAACGGTTA+TGG 0.368793 4.3:+23971620 MS.gene052494:CDS
TGCCTGGCTTTGGGCCTTGG+AGG 0.380338 4.3:-23974024 None:intergenic
TTCCCTTTGGAGTCTTTAGC+AGG 0.387984 4.3:-23974133 None:intergenic
CCGTTATTGGCAGCATCCTT+TGG 0.394987 4.3:-23974241 None:intergenic
GGTTTAGGTGCTGATCCATT+TGG 0.396493 4.3:-23974181 None:intergenic
GAAAGGTCGGTGGGTTTGCC+TGG 0.402706 4.3:-23974040 None:intergenic
CCGGAATCTCCGGATGTATT+CGG 0.406444 4.3:+23971542 MS.gene052494:CDS
GCTGCTGTTGTGTGATCTAC+AGG 0.409676 4.3:-23971518 None:intergenic
ACTTCCGGTGCTGATCCATT+TGG 0.420411 4.3:-23974202 None:intergenic
AACTAGACGAGAAGGAGAAA+AGG 0.420773 4.3:+23973643 MS.gene052494:CDS
AACAGCAGCGCCGGAATCTC+CGG 0.421407 4.3:+23971532 MS.gene052494:CDS
TTGGAGTCTTTAGCAGGTGC+AGG 0.422981 4.3:-23974127 None:intergenic
TGTGATTCAGGTGCAACTTC+CGG 0.424313 4.3:-23974217 None:intergenic
CTCAATGTTGGCAACCTCAC+GGG 0.426203 4.3:-23973954 None:intergenic
GCAGACTGCTCCTCAGTGGC+AGG 0.431231 4.3:-23974292 None:intergenic
GCTTCCTCCTCCTGCTGAGA+TGG 0.448243 4.3:+23971682 MS.gene052494:CDS
GTTTGTGGAACAGTTATACT+TGG 0.453267 4.3:+23973865 MS.gene052494:intron
GGTGAAGTGGTCTTCGTTGA+CGG 0.458970 4.3:-23971432 None:intergenic
ACAAGGTTCAAAACAGAGAA+AGG 0.459770 4.3:+23973754 MS.gene052494:CDS
AATGAGATTAAAGATTATTG+AGG 0.464614 4.3:+23973674 MS.gene052494:CDS
GAAACAGCAACTAAACCAAA+TGG 0.475248 4.3:+23974166 MS.gene052494:CDS
CTAAGAACGTTACCTTCCTC+CGG 0.484104 4.3:-23971707 None:intergenic
AGAATAGTTGTCGTCGTCGC+CGG 0.485975 4.3:-23971456 None:intergenic
AGGAGGAAGCACCGGACCAT+CGG 0.488490 4.3:-23971669 None:intergenic
GGATCAGCACCTAAACCAAA+TGG 0.488856 4.3:+23974187 MS.gene052494:CDS
CATCACATGCACTGGTTCGA+AGG 0.488969 4.3:-23971600 None:intergenic
GTGATCTACAGGGACATCTT+CGG 0.492594 4.3:-23971507 None:intergenic
CCAGTGCATGTGATGGAAAA+CGG 0.493151 4.3:+23971608 MS.gene052494:CDS
AAGTGGGTTTCTATGAGAAA+AGG 0.493819 4.3:+23973712 MS.gene052494:CDS
TCCTCCGGCTCCATCTCAGC+AGG 0.495243 4.3:-23971692 None:intergenic
GGAGGAAGGTAACGTTCTTA+GGG 0.497743 4.3:+23971709 MS.gene052494:CDS
TCCTCCTGCTGAGATGGAGC+CGG 0.501036 4.3:+23971688 MS.gene052494:CDS
GTGGCAGGAGCTTCTTTCTG+AGG 0.503664 4.3:-23974277 None:intergenic
ACTAGACGAGAAGGAGAAAA+GGG 0.504571 4.3:+23973644 MS.gene052494:CDS
GTCCTCCAAGGCCCAAAGCC+AGG 0.509150 4.3:+23974022 MS.gene052494:CDS
TTAGCAGGTGCAGGTGGAGG+AGG 0.510354 4.3:-23974118 None:intergenic
CCAAAGGATGCTGCCAATAA+CGG 0.510873 4.3:+23974241 MS.gene052494:CDS
ATATCTGCCGCATCCTAGAA+AGG 0.513686 4.3:-23974057 None:intergenic
TGTATTCGGATTCAGCGATC+AGG 0.515580 4.3:+23971556 MS.gene052494:CDS
CGTCGTCGCCGGCGGTGAAG+TGG 0.522107 4.3:-23971445 None:intergenic
GGCTCCATCTCAGCAGGAGG+AGG 0.522435 4.3:-23971686 None:intergenic
TCTTTAGCAGGTGCAGGTGG+AGG 0.524857 4.3:-23974121 None:intergenic
GACGACAACTATTCTGGATA+CGG 0.532542 4.3:+23971464 MS.gene052494:CDS
CAAGGTTCAAAACAGAGAAA+GGG 0.537446 4.3:+23973755 MS.gene052494:CDS
TCTCAATGTTGGCAACCTCA+CGG 0.539692 4.3:-23973955 None:intergenic
AAGGGAGACTGAGCGTAACT+CGG 0.540887 4.3:-23971581 None:intergenic
AAGGTAACGTTCTTAGGGAA+TGG 0.547512 4.3:+23971714 MS.gene052494:CDS
CACCTGCTAAAGACTCCAAA+GGG 0.547927 4.3:+23974131 MS.gene052494:CDS
AACGAAGACCACTTCACCGC+CGG 0.548831 4.3:+23971437 MS.gene052494:CDS
GAGTCTTTAGCAGGTGCAGG+TGG 0.551285 4.3:-23974124 None:intergenic
TCGCTGAATCCGAATACATC+CGG 0.554031 4.3:-23971551 None:intergenic
TGCTATTCAACTAGACGAGA+AGG 0.554504 4.3:+23973635 MS.gene052494:CDS
CTTCGAACCAGTGCATGTGA+TGG 0.556019 4.3:+23971601 MS.gene052494:CDS
GTGGTCTTCGTTGACGGTGA+AGG 0.559914 4.3:-23971426 None:intergenic
GCCAACATTGAGAAGAAAAG+AGG 0.561154 4.3:+23973965 MS.gene052494:CDS
AAAGATTATTGAGGAAGCTG+AGG 0.562392 4.3:+23973683 MS.gene052494:CDS
TCCGGCTCCATCTCAGCAGG+AGG 0.569202 4.3:-23971689 None:intergenic
GAAGCTGAGGATTACAAAGT+GGG 0.570600 4.3:+23973696 MS.gene052494:CDS
TTCGTTGACGGTGAAGGACA+TGG 0.571845 4.3:-23971420 None:intergenic
CATGTGATGGAAAACGGAAA+CGG 0.572497 4.3:+23971614 MS.gene052494:CDS
ATCACATGCACTGGTTCGAA+GGG 0.575990 4.3:-23971599 None:intergenic
AGATCACACAACAGCAGCGC+CGG 0.576259 4.3:+23971523 MS.gene052494:CDS
GCTGAGATGGAGCCGGAGGA+AGG 0.577970 4.3:+23971695 MS.gene052494:CDS
TCCTGCTGAGATGGAGCCGG+AGG 0.580872 4.3:+23971691 MS.gene052494:CDS
TCAGCAGGAGGAGGAAGCAC+CGG 0.587615 4.3:-23971677 None:intergenic
AAATTACTGGAAAGCAATTG+GGG 0.589625 4.3:+23973922 MS.gene052494:CDS
CCTTGGAGGACAGTAACTGA+TGG 0.599991 4.3:-23974010 None:intergenic
CCACCGACCTTTCTAGGATG+CGG 0.602155 4.3:+23974050 MS.gene052494:CDS
TGCACCTGAATCACAACCAA+AGG 0.604455 4.3:+23974225 MS.gene052494:CDS
ATAGTTGTCGTCGTCGCCGG+CGG 0.604799 4.3:-23971453 None:intergenic
GGAGGAGGAATCATGTGAAG+TGG 0.606489 4.3:-23974103 None:intergenic
TGCTAAAGACTCCAAAGGGA+AGG 0.606563 4.3:+23974135 MS.gene052494:CDS
CTGCCGCATCCTAGAAAGGT+CGG 0.609710 4.3:-23974053 None:intergenic
GGAAGCTGAGGATTACAAAG+TGG 0.610216 4.3:+23973695 MS.gene052494:CDS
CGCATCCTAGAAAGGTCGGT+GGG 0.610689 4.3:-23974049 None:intergenic
TCAATGTTGGCAACCTCACG+GGG 0.611587 4.3:-23973953 None:intergenic
TCAAAACAGAGAAAGGGAGA+AGG 0.613489 4.3:+23973761 MS.gene052494:CDS
CCATCAGTTACTGTCCTCCA+AGG 0.615544 4.3:+23974010 MS.gene052494:CDS
CCGCATCCTAGAAAGGTCGG+TGG 0.616621 4.3:-23974050 None:intergenic
TAAACCAAATGGATCAGCAC+CGG 0.618396 4.3:+23974198 MS.gene052494:CDS
AAAGACTCCAAAGGGAAGGA+CGG 0.629704 4.3:+23974139 MS.gene052494:CDS
GCACCTGCTAAAGACTCCAA+AGG 0.630783 4.3:+23974130 MS.gene052494:CDS
CTGCTGTTGTGTGATCTACA+GGG 0.636206 4.3:-23971517 None:intergenic
GGAGGAATCATGTGAAGTGG+TGG 0.643969 4.3:-23974100 None:intergenic
GACAACTATTCTGGATACGG+CGG 0.653119 4.3:+23971467 MS.gene052494:CDS
ACGTTCTTAGGGAATGGCGC+CGG 0.656812 4.3:+23971720 MS.gene052494:CDS
ATCTACAGGGACATCTTCGG+CGG 0.664893 4.3:-23971504 None:intergenic
GAAAGAAGCTCCTGCCACTG+AGG 0.676516 4.3:+23974282 MS.gene052494:CDS
TGCAGCAGACTGCTCCTCAG+TGG 0.680257 4.3:-23974296 None:intergenic
GAAAACGGAAACGGTTATGG+CGG 0.686022 4.3:+23971623 MS.gene052494:CDS
TGGGGAGATAATTCCCCGTG+AGG 0.688947 4.3:+23973940 MS.gene052494:CDS
GCTCAATGTTGAGACAAACA+AGG 0.723788 4.3:+23973737 MS.gene052494:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAATAGTATTTGTATTAA+TGG - chr4.3:23973473-23973492 None:intergenic 15.0%
!! TAATAATTAAAAGTAGAGTA+AGG + chr4.3:23973307-23973326 MS.gene052494:intron 15.0%
!! TAATACAAATACTATTTGTT+TGG + chr4.3:23973474-23973493 MS.gene052494:intron 15.0%
!! TATAGTAAAAAATATAAGGA+AGG + chr4.3:23972391-23972410 MS.gene052494:intron 15.0%
!!! ATCTCTAAAAATTAAAAGAA+CGG - chr4.3:23973838-23973857 None:intergenic 15.0%
!! AACATTTATTGGATTTAATG+AGG + chr4.3:23972298-23972317 MS.gene052494:intron 20.0%
!! AATGAGATTAAAGATTATTG+AGG + chr4.3:23973674-23973693 MS.gene052494:CDS 20.0%
!! ACATTTATTGGATTTAATGA+GGG + chr4.3:23972299-23972318 MS.gene052494:intron 20.0%
!! ATTCGTAAAAACATCAATAA+CGG + chr4.3:23973263-23973282 MS.gene052494:intron 20.0%
!! ATTGTCTTGAAAACATTTAT+TGG + chr4.3:23972287-23972306 MS.gene052494:intron 20.0%
!! TAAAAAATATAAGGAAGGAA+GGG + chr4.3:23972396-23972415 MS.gene052494:intron 20.0%
!! TAAAAAGTAAGTTCAGAATA+AGG + chr4.3:23973136-23973155 MS.gene052494:intron 20.0%
!! TTTATGTTAATTGTCTATGT+TGG + chr4.3:23972486-23972505 MS.gene052494:intron 20.0%
!!! GTAAAAAGTAATGATAATGT+AGG - chr4.3:23973800-23973819 None:intergenic 20.0%
!!! TAATTTTTTTCCTTCGAATT+TGG + chr4.3:23972665-23972684 MS.gene052494:intron 20.0%
! AAAAATTACTGGAAAGCAAT+TGG + chr4.3:23973920-23973939 MS.gene052494:CDS 25.0%
! AAAATTACTGGAAAGCAATT+GGG + chr4.3:23973921-23973940 MS.gene052494:CDS 25.0%
! AAAGTTTAAACTACCTAAGA+TGG - chr4.3:23973227-23973246 None:intergenic 25.0%
! AAATACTTGTCCTACATTTA+AGG - chr4.3:23973525-23973544 None:intergenic 25.0%
! AAATGGTTGATCTTTAAACA+TGG + chr4.3:23973365-23973384 MS.gene052494:intron 25.0%
! AACTAGAAGTCTAGAAATAA+AGG - chr4.3:23972646-23972665 None:intergenic 25.0%
! ACTAGAAGTCTAGAAATAAA+GGG - chr4.3:23972645-23972664 None:intergenic 25.0%
! AGATGGAATTAAGATATGTT+TGG + chr4.3:23973005-23973024 MS.gene052494:intron 25.0%
! AGTCCATCATATTAAATGAT+GGG + chr4.3:23972943-23972962 MS.gene052494:intron 25.0%
! GTAAAAAATATAAGGAAGGA+AGG + chr4.3:23972395-23972414 MS.gene052494:intron 25.0%
! TCTTAACCATCAAAAAAACT+TGG - chr4.3:23971975-23971994 None:intergenic 25.0%
! TTATTCTGAACCTTAAATGT+AGG + chr4.3:23973512-23973531 MS.gene052494:intron 25.0%
! TTTGTGAAAATTCTCTTGAT+TGG - chr4.3:23973891-23973910 None:intergenic 25.0%
!! AATTTGGTTTCTTTATGTGA+TGG + chr4.3:23972681-23972700 MS.gene052494:intron 25.0%
!! ATGTTTTCTTTTGAATGCTT+AGG + chr4.3:23971853-23971872 MS.gene052494:intron 25.0%
!! GATCTTAAATCTCTAAAGAT+CGG - chr4.3:23973557-23973576 None:intergenic 25.0%
!!! TTTTTTTCTTCTTCCATCTT+AGG + chr4.3:23973211-23973230 MS.gene052494:intron 25.0%
AAACACGATATGCATATGTT+TGG - chr4.3:23972468-23972487 None:intergenic 30.0%
AAATTACTGGAAAGCAATTG+GGG + chr4.3:23973922-23973941 MS.gene052494:CDS 30.0%
AATATGTCTGTGGATCAATT+GGG + chr4.3:23972155-23972174 MS.gene052494:intron 30.0%
AATGCTTAGGATTATGAATC+AGG + chr4.3:23971866-23971885 MS.gene052494:intron 30.0%
ACTATTTGTTTGGTCATATG+AGG + chr4.3:23973484-23973503 MS.gene052494:intron 30.0%
ATGCTTAGGATTATGAATCA+GGG + chr4.3:23971867-23971886 MS.gene052494:intron 30.0%
CAGTCCATCATATTAAATGA+TGG + chr4.3:23972942-23972961 MS.gene052494:intron 30.0%
CATAAAGAAACCAAATTCGA+AGG - chr4.3:23972678-23972697 None:intergenic 30.0%
CTAGATCTAAGTTTAACAGA+CGG - chr4.3:23972209-23972228 None:intergenic 30.0%
GAACATATGAGAAACATGTA+GGG + chr4.3:23972327-23972346 MS.gene052494:intron 30.0%
GAACATCATAAAACTACACA+AGG - chr4.3:23972598-23972617 None:intergenic 30.0%
TCTCCCATCATTTAATATGA+TGG - chr4.3:23972949-23972968 None:intergenic 30.0%
TGAACATATGAGAAACATGT+AGG + chr4.3:23972326-23972345 MS.gene052494:intron 30.0%
TGACTATTTACTATCTGACA+CGG - chr4.3:23973115-23973134 None:intergenic 30.0%
TTAGAGATGAACTATGTTTG+TGG + chr4.3:23973850-23973869 MS.gene052494:intron 30.0%
! AAAATTGTTTTCTCACTACG+TGG - chr4.3:23973436-23973455 None:intergenic 30.0%
! AAATTGTTTTCTCACTACGT+GGG - chr4.3:23973435-23973454 None:intergenic 30.0%
! GTAGTGAGAAAACAATTTTC+TGG + chr4.3:23973437-23973456 MS.gene052494:intron 30.0%
! TCAAGAGAATTTTCACAAAG+AGG + chr4.3:23973892-23973911 MS.gene052494:CDS 30.0%
! TCATTTTCGTAGGAAAAGTA+GGG + chr4.3:23972713-23972732 MS.gene052494:intron 30.0%
! TTCATTTTCGTAGGAAAAGT+AGG + chr4.3:23972712-23972731 MS.gene052494:intron 30.0%
!! ATAATGGATGAATATGTCTG+TGG + chr4.3:23972145-23972164 MS.gene052494:intron 30.0%
!! TTTCTTTATGTGATGGATCA+TGG + chr4.3:23972688-23972707 MS.gene052494:intron 30.0%
!!! CTACAGCTTTTTTTAATCGA+TGG - chr4.3:23972747-23972766 None:intergenic 30.0%
!!! CTGAAACCAAGTTTTTTTGA+TGG + chr4.3:23971966-23971985 MS.gene052494:intron 30.0%
AAAACAGATCCTACGAACTA+TGG - chr4.3:23972101-23972120 None:intergenic 35.0%
AAAGATTATTGAGGAAGCTG+AGG + chr4.3:23973683-23973702 MS.gene052494:CDS 35.0%
AAAGTTGTGCTTCAGTTGAA+AGG - chr4.3:23972844-23972863 None:intergenic 35.0%
AAGAGGCTGACAAAAATTAC+TGG + chr4.3:23973909-23973928 MS.gene052494:CDS 35.0%
AAGTTGTGCTTCAGTTGAAA+GGG - chr4.3:23972843-23972862 None:intergenic 35.0%
AATAACGGTTGAGCAAATGA+AGG + chr4.3:23973278-23973297 MS.gene052494:intron 35.0%
ACAAGGTTCAAAACAGAGAA+AGG + chr4.3:23973754-23973773 MS.gene052494:CDS 35.0%
AGGATTATGAATCAGGGATT+AGG + chr4.3:23971873-23971892 MS.gene052494:intron 35.0%
AGTTTCTATCATGTGATTGG+AGG - chr4.3:23972800-23972819 None:intergenic 35.0%
ATATGTCTGTGGATCAATTG+GGG + chr4.3:23972156-23972175 MS.gene052494:intron 35.0%
ATGAACCAGAAGATCAAAGT+AGG + chr4.3:23972980-23972999 MS.gene052494:intron 35.0%
CAAACGAGATCTAACATAGA+AGG - chr4.3:23971761-23971780 None:intergenic 35.0%
CAAGGTTCAAAACAGAGAAA+GGG + chr4.3:23973755-23973774 MS.gene052494:CDS 35.0%
CAGTTCACTAAATCAGCATA+TGG - chr4.3:23972007-23972026 None:intergenic 35.0%
CGTCTGTTAAACTTAGATCT+AGG + chr4.3:23972207-23972226 MS.gene052494:intron 35.0%
GAAACAGCAACTAAACCAAA+TGG + chr4.3:23974166-23974185 MS.gene052494:CDS 35.0%
GAAGATCAAAGTAGGATAGA+TGG + chr4.3:23972988-23973007 MS.gene052494:intron 35.0%
GAATATGTCTGTGGATCAAT+TGG + chr4.3:23972154-23972173 MS.gene052494:intron 35.0%
GTAAGGTCAAAGAAAGCAAT+AGG + chr4.3:23973324-23973343 MS.gene052494:intron 35.0%
GTTCATATTCCATAGTTCGT+AGG + chr4.3:23972089-23972108 MS.gene052494:intron 35.0%
GTTTGTGGAACAGTTATACT+TGG + chr4.3:23973865-23973884 MS.gene052494:intron 35.0%
TCTATCCTACTTTGATCTTC+TGG - chr4.3:23972988-23973007 None:intergenic 35.0%
TGAATCTACAGTACCGTTAT+TGG - chr4.3:23974257-23974276 None:intergenic 35.0%
TGAGAAGAAAAGAGGCAAAA+AGG + chr4.3:23973973-23973992 MS.gene052494:CDS 35.0%
TGGAGTTTCTATCATGTGAT+TGG - chr4.3:23972803-23972822 None:intergenic 35.0%
TGGTGTATGACAAGAAGTTA+TGG + chr4.3:23973385-23973404 MS.gene052494:intron 35.0%
TTGTCTATGTTGGCAAAACT+TGG + chr4.3:23972496-23972515 MS.gene052494:intron 35.0%
! AAGTGGGTTTCTATGAGAAA+AGG + chr4.3:23973712-23973731 MS.gene052494:CDS 35.0%
! GATCATGGATTCATTTTCGT+AGG + chr4.3:23972703-23972722 MS.gene052494:intron 35.0%
! GTTTATGCGGGTTGAAATAA+TGG + chr4.3:23972129-23972148 MS.gene052494:intron 35.0%
! GTTTTGCATGCTTGTTTATG+CGG + chr4.3:23972116-23972135 MS.gene052494:intron 35.0%
! TTTTGCATGCTTGTTTATGC+GGG + chr4.3:23972117-23972136 MS.gene052494:intron 35.0%
!! ATGCAGAGCTTATAGTTTTG+TGG - chr4.3:23973074-23973093 None:intergenic 35.0%
AACTAGACGAGAAGGAGAAA+AGG + chr4.3:23973643-23973662 MS.gene052494:CDS 40.0%
AAGGTAACGTTCTTAGGGAA+TGG + chr4.3:23971714-23971733 MS.gene052494:CDS 40.0%
ACCATTGTGAGTGCTTCTAA+CGG + chr4.3:23972438-23972457 MS.gene052494:intron 40.0%
ACGTGTTGCAACAATGAGAT+AGG - chr4.3:23972620-23972639 None:intergenic 40.0%
ACTAGACGAGAAGGAGAAAA+GGG + chr4.3:23973644-23973663 MS.gene052494:CDS 40.0%
ATGGAAAACGGAAACGGTTA+TGG + chr4.3:23971620-23971639 MS.gene052494:CDS 40.0%
GAAAAGAGGCAAAAAGGATC+AGG + chr4.3:23973979-23973998 MS.gene052494:CDS 40.0%
GAAGCTGAGGATTACAAAGT+GGG + chr4.3:23973696-23973715 MS.gene052494:CDS 40.0%
GACGACAACTATTCTGGATA+CGG + chr4.3:23971464-23971483 MS.gene052494:CDS 40.0%
GCCAACATTGAGAAGAAAAG+AGG + chr4.3:23973965-23973984 MS.gene052494:CDS 40.0%
GCTCAATGTTGAGACAAACA+AGG + chr4.3:23973737-23973756 MS.gene052494:CDS 40.0%
TAAACCAAATGGATCAGCAC+CGG + chr4.3:23974177-23974196 MS.gene052494:CDS 40.0%
TCAAAACAGAGAAAGGGAGA+AGG + chr4.3:23973761-23973780 MS.gene052494:CDS 40.0%
TGATTTAGTGAACTGTTGCG+TGG + chr4.3:23972012-23972031 MS.gene052494:intron 40.0%
TGCTATTCAACTAGACGAGA+AGG + chr4.3:23973635-23973654 MS.gene052494:CDS 40.0%
TGGAATGCAAGTTTAGCAAG+AGG + chr4.3:23972897-23972916 MS.gene052494:intron 40.0%
! AAGGAATCTGAAACACTCAC+CGG - chr4.3:23971742-23971761 None:intergenic 40.0%
! CATGTGATGGAAAACGGAAA+CGG + chr4.3:23971614-23971633 MS.gene052494:CDS 40.0%
! GCCTCTTTTCTTCTCAATGT+TGG - chr4.3:23973969-23973988 None:intergenic 40.0%
!!! GGGTTAGTTTTATGCTCTGT+TGG + chr4.3:23972049-23972068 MS.gene052494:intron 40.0%
AAAGACTCCAAAGGGAAGGA+CGG + chr4.3:23974139-23974158 MS.gene052494:CDS 45.0%
ACTACGTGGGATTGACTACA+AGG - chr4.3:23973422-23973441 None:intergenic 45.0%
ATATCTGCCGCATCCTAGAA+AGG - chr4.3:23974060-23974079 None:intergenic 45.0%
CACCTGCTAAAGACTCCAAA+GGG + chr4.3:23974131-23974150 MS.gene052494:CDS 45.0%
CCAAAGGATGCTGCCAATAA+CGG + chr4.3:23974241-23974260 MS.gene052494:CDS 45.0%
CTAAGAACGTTACCTTCCTC+CGG - chr4.3:23971710-23971729 None:intergenic 45.0%
CTGCTGTTGTGTGATCTACA+GGG - chr4.3:23971520-23971539 None:intergenic 45.0%
CTTCAGTTGAAAGGGAGATG+TGG - chr4.3:23972835-23972854 None:intergenic 45.0%
GAAAACGGAAACGGTTATGG+CGG + chr4.3:23971623-23971642 MS.gene052494:CDS 45.0%
GACAACTATTCTGGATACGG+CGG + chr4.3:23971467-23971486 MS.gene052494:CDS 45.0%
GCATCCTTTGGTTGTGATTC+AGG - chr4.3:23974232-23974251 None:intergenic 45.0%
GGAAGCTGAGGATTACAAAG+TGG + chr4.3:23973695-23973714 MS.gene052494:CDS 45.0%
GGAGGAAGGTAACGTTCTTA+GGG + chr4.3:23971709-23971728 MS.gene052494:CDS 45.0%
GGATCAGCACCTAAACCAAA+TGG + chr4.3:23974187-23974206 MS.gene052494:CDS 45.0%
GTGATCTACAGGGACATCTT+CGG - chr4.3:23971510-23971529 None:intergenic 45.0%
GTTTGACAACAATGCAGCGT+AGG + chr4.3:23972353-23972372 MS.gene052494:intron 45.0%
TCGCTGAATCCGAATACATC+CGG - chr4.3:23971554-23971573 None:intergenic 45.0%
TCTCAATGTTGGCAACCTCA+CGG - chr4.3:23973958-23973977 None:intergenic 45.0%
TGCACCTGAATCACAACCAA+AGG + chr4.3:23974225-23974244 MS.gene052494:CDS 45.0%
TGCTAAAGACTCCAAAGGGA+AGG + chr4.3:23974135-23974154 MS.gene052494:CDS 45.0%
TGCTCTGTTGGATTGCAGTT+TGG + chr4.3:23972061-23972080 MS.gene052494:intron 45.0%
TGTATTCGGATTCAGCGATC+AGG + chr4.3:23971556-23971575 MS.gene052494:CDS 45.0%
TGTGATTCAGGTGCAACTTC+CGG - chr4.3:23974220-23974239 None:intergenic 45.0%
! CCAGTGCATGTGATGGAAAA+CGG + chr4.3:23971608-23971627 MS.gene052494:CDS 45.0%
! TTCTTTTCCGTCCTTCCCTT+TGG - chr4.3:23974149-23974168 None:intergenic 45.0%
!! ACCGTTAGAAGCACTCACAA+TGG - chr4.3:23972442-23972461 None:intergenic 45.0%
!! ATCACATGCACTGGTTCGAA+GGG - chr4.3:23971602-23971621 None:intergenic 45.0%
!! GGTGCTGATCCATTTGGTTT+AGG - chr4.3:23974178-23974197 None:intergenic 45.0%
!! GGTTTAGGTGCTGATCCATT+TGG - chr4.3:23974184-23974203 None:intergenic 45.0%
!! TTCCCTTTGGAGTCTTTAGC+AGG - chr4.3:23974136-23974155 None:intergenic 45.0%
!! AAAAATTAAAACAAAATATA+TGG + chr4.3:23972877-23972896 MS.gene052494:intron 5.0%
!! TAAATTATTATGAATTTAAA+TGG + chr4.3:23973348-23973367 MS.gene052494:intron 5.0%
!! TATATATAGTAAAAAATATA+AGG + chr4.3:23972387-23972406 MS.gene052494:intron 5.0%
AAGGGAGACTGAGCGTAACT+CGG - chr4.3:23971584-23971603 None:intergenic 50.0%
AGAATAGTTGTCGTCGTCGC+CGG - chr4.3:23971459-23971478 None:intergenic 50.0%
ATCTACAGGGACATCTTCGG+CGG - chr4.3:23971507-23971526 None:intergenic 50.0%
CCATCAGTTACTGTCCTCCA+AGG + chr4.3:23974010-23974029 MS.gene052494:CDS 50.0%
CCGAATACATCCGGAGATTC+CGG - chr4.3:23971545-23971564 None:intergenic 50.0%
CCGGAATCTCCGGATGTATT+CGG + chr4.3:23971542-23971561 MS.gene052494:CDS 50.0%
CCGTTATTGGCAGCATCCTT+TGG - chr4.3:23974244-23974263 None:intergenic 50.0%
CCTTGGAGGACAGTAACTGA+TGG - chr4.3:23974013-23974032 None:intergenic 50.0%
CGGAGGAAGGTAACGTTCTT+AGG + chr4.3:23971708-23971727 MS.gene052494:CDS 50.0%
CTCAATGTTGGCAACCTCAC+GGG - chr4.3:23973957-23973976 None:intergenic 50.0%
CTTCGAACCAGTGCATGTGA+TGG + chr4.3:23971601-23971620 MS.gene052494:CDS 50.0%
GAGGTAGATCACAAGTCTCG+TGG + chr4.3:23972916-23972935 MS.gene052494:intron 50.0%
GCACCTGCTAAAGACTCCAA+AGG + chr4.3:23974130-23974149 MS.gene052494:CDS 50.0%
GCTGCTGTTGTGTGATCTAC+AGG - chr4.3:23971521-23971540 None:intergenic 50.0%
GGAGGAATCATGTGAAGTGG+TGG - chr4.3:23974103-23974122 None:intergenic 50.0%
GGAGGAGGAATCATGTGAAG+TGG - chr4.3:23974106-23974125 None:intergenic 50.0%
GGGAGATGTGGTGCAATTGT+TGG - chr4.3:23972823-23972842 None:intergenic 50.0%
GGTGAAGTGGTCTTCGTTGA+CGG - chr4.3:23971435-23971454 None:intergenic 50.0%
TCAATGTTGGCAACCTCACG+GGG - chr4.3:23973956-23973975 None:intergenic 50.0%
TTGGAGTCTTTAGCAGGTGC+AGG - chr4.3:23974130-23974149 None:intergenic 50.0%
! CCGTTTTCCATCACATGCAC+TGG - chr4.3:23971611-23971630 None:intergenic 50.0%
! CGTTTTTGTCTCCGATGGTC+CGG + chr4.3:23971658-23971677 MS.gene052494:CDS 50.0%
! GACGACGTTTTTGTCTCCGA+TGG + chr4.3:23971653-23971672 MS.gene052494:CDS 50.0%
!! ACTTCCGGTGCTGATCCATT+TGG - chr4.3:23974205-23974224 None:intergenic 50.0%
!! CATCACATGCACTGGTTCGA+AGG - chr4.3:23971603-23971622 None:intergenic 50.0%
AACGAAGACCACTTCACCGC+CGG + chr4.3:23971437-23971456 MS.gene052494:CDS 55.0%
ACGTTCTTAGGGAATGGCGC+CGG + chr4.3:23971720-23971739 MS.gene052494:CDS 55.0%
AGATCACACAACAGCAGCGC+CGG + chr4.3:23971523-23971542 MS.gene052494:CDS 55.0%
CGCATCCTAGAAAGGTCGGT+GGG - chr4.3:23974052-23974071 None:intergenic 55.0%
CTGCCGCATCCTAGAAAGGT+CGG - chr4.3:23974056-23974075 None:intergenic 55.0%
GAAAGAAGCTCCTGCCACTG+AGG + chr4.3:23974282-23974301 MS.gene052494:CDS 55.0%
GAGTCTTTAGCAGGTGCAGG+TGG - chr4.3:23974127-23974146 None:intergenic 55.0%
GCAAACCCACCGACCTTTCT+AGG + chr4.3:23974044-23974063 MS.gene052494:CDS 55.0%
GGCGACGACGACAACTATTC+TGG + chr4.3:23971458-23971477 MS.gene052494:CDS 55.0%
GTGGCAGGAGCTTCTTTCTG+AGG - chr4.3:23974280-23974299 None:intergenic 55.0%
GTGGTCTTCGTTGACGGTGA+AGG - chr4.3:23971429-23971448 None:intergenic 55.0%
TCTTTAGCAGGTGCAGGTGG+AGG - chr4.3:23974124-23974143 None:intergenic 55.0%
TGGGGAGATAATTCCCCGTG+AGG + chr4.3:23973940-23973959 MS.gene052494:CDS 55.0%
!! CCACCGACCTTTCTAGGATG+CGG + chr4.3:23974050-23974069 MS.gene052494:CDS 55.0%
!! GCGTGGTGACGAGCTTTTGA+GGG + chr4.3:23972029-23972048 MS.gene052494:intron 55.0%
!! TGCGTGGTGACGAGCTTTTG+AGG + chr4.3:23972028-23972047 MS.gene052494:intron 55.0%
ATAGTTGTCGTCGTCGCCGG+CGG - chr4.3:23971456-23971475 None:intergenic 60.0%
CCGCATCCTAGAAAGGTCGG+TGG - chr4.3:23974053-23974072 None:intergenic 60.0%
GCTTCCTCCTCCTGCTGAGA+TGG + chr4.3:23971682-23971701 MS.gene052494:CDS 60.0%
TCCTCCTGCTGAGATGGAGC+CGG + chr4.3:23971688-23971707 MS.gene052494:CDS 60.0%
TGCAGCAGACTGCTCCTCAG+TGG - chr4.3:23974299-23974318 None:intergenic 60.0%
TTAGCAGGTGCAGGTGGAGG+AGG - chr4.3:23974121-23974140 None:intergenic 60.0%
! AACAGCAGCGCCGGAATCTC+CGG + chr4.3:23971532-23971551 MS.gene052494:CDS 60.0%
! CGGTGGGTTTGCCTGGCTTT+GGG - chr4.3:23974036-23974055 None:intergenic 60.0%
! GAAAGGTCGGTGGGTTTGCC+TGG - chr4.3:23974043-23974062 None:intergenic 60.0%
! TCAGCAGGAGGAGGAAGCAC+CGG - chr4.3:23971680-23971699 None:intergenic 60.0%
! TCGGTGGGTTTGCCTGGCTT+TGG - chr4.3:23974037-23974056 None:intergenic 60.0%
!! AGGAGGAAGCACCGGACCAT+CGG - chr4.3:23971672-23971691 None:intergenic 60.0%
!! GTTTGCCTGGCTTTGGGCCT+TGG - chr4.3:23974030-23974049 None:intergenic 60.0%
GCAGACTGCTCCTCAGTGGC+AGG - chr4.3:23974295-23974314 None:intergenic 65.0%
GCTGAGATGGAGCCGGAGGA+AGG + chr4.3:23971695-23971714 MS.gene052494:CDS 65.0%
GGCTCCATCTCAGCAGGAGG+AGG - chr4.3:23971689-23971708 None:intergenic 65.0%
GTCCTCCAAGGCCCAAAGCC+AGG + chr4.3:23974022-23974041 MS.gene052494:CDS 65.0%
TCCGGCTCCATCTCAGCAGG+AGG - chr4.3:23971692-23971711 None:intergenic 65.0%
TCCTCCGGCTCCATCTCAGC+AGG - chr4.3:23971695-23971714 None:intergenic 65.0%
TCCTGCTGAGATGGAGCCGG+AGG + chr4.3:23971691-23971710 MS.gene052494:CDS 65.0%
!! TGCCTGGCTTTGGGCCTTGG+AGG - chr4.3:23974027-23974046 None:intergenic 65.0%
CGTCGTCGCCGGCGGTGAAG+TGG - chr4.3:23971448-23971467 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 23971422 23974321 23971422 ID=MS.gene052494
chr4.3 mRNA 23971422 23974321 23971422 ID=MS.gene052494.t1;Parent=MS.gene052494
chr4.3 exon 23971422 23971741 23971422 ID=MS.gene052494.t1.exon1;Parent=MS.gene052494.t1
chr4.3 CDS 23971422 23971741 23971422 ID=cds.MS.gene052494.t1;Parent=MS.gene052494.t1
chr4.3 exon 23973629 23973782 23973629 ID=MS.gene052494.t1.exon2;Parent=MS.gene052494.t1
chr4.3 CDS 23973629 23973782 23973629 ID=cds.MS.gene052494.t1;Parent=MS.gene052494.t1
chr4.3 exon 23973878 23974321 23973878 ID=MS.gene052494.t1.exon3;Parent=MS.gene052494.t1
chr4.3 CDS 23973878 23974321 23973878 ID=cds.MS.gene052494.t1;Parent=MS.gene052494.t1
Gene Sequence

>MS.gene052494

ATGTCCTTCACCGTCAACGAAGACCACTTCACCGCCGGCGACGACGACAACTATTCTGGATACGGCGGATTCTCAAGCTACTCCGCCGAAGATGTCCCTGTAGATCACACAACAGCAGCGCCGGAATCTCCGGATGTATTCGGATTCAGCGATCAGGATCCGAGTTACGCTCAGTCTCCCTTCGAACCAGTGCATGTGATGGAAAACGGAAACGGTTATGGCGGTCACGATGACGACGTTTTTGTCTCCGATGGTCCGGTGCTTCCTCCTCCTGCTGAGATGGAGCCGGAGGAAGGTAACGTTCTTAGGGAATGGCGCCGGTGAGTGTTTCAGATTCCTTCTATGTTAGATCTCGTTTGAATCTGCTTAGATCTATGCTAATTTTGCTTTCAATGCTAATTGCTTGATCTTAAAGTTTTCTTTTTTACTTGATGTTTTCTTTTGAATGCTTAGGATTATGAATCAGGGATTAGGAAGTAGAAAGAAGTGAATTGAACTTAGTTTGATTCAAATTTCACTTGAAAATTGAAATAATTTACTTGAGCTGAAACCAAGTTTTTTTGATGGTTAAGATTTAGTAAGCCATATGCTGATTTAGTGAACTGTTGCGTGGTGACGAGCTTTTGAGGGTTAGTTTTATGCTCTGTTGGATTGCAGTTTGGATTTTGTTCATATTCCATAGTTCGTAGGATCTGTTTTGCATGCTTGTTTATGCGGGTTGAAATAATGGATGAATATGTCTGTGGATCAATTGGGGCGAGATCTTTTGTACATGATTGTCTCTCCGTCTGTTAAACTTAGATCTAGGTAGTGATTTATAGATTAGCAGATGATGATAAAGTTTGATGTGAATAAATAGCATCAAATTGTCTTGAAAACATTTATTGGATTTAATGAGGGCTGATGAACATATGAGAAACATGTAGGGTATGTTTGACAACAATGCAGCGTAGGTTTGAGTAAAGTATATATAGTAAAAAATATAAGGAAGGAAGGGTTCATTTTGCTTCAAATAGACCATTGTGAGTGCTTCTAACGGTTTTCCAAACATATGCATATCGTGTTTTATGTTAATTGTCTATGTTGGCAAAACTTGGTAAACATCGTAATCGTAATGTATGCATATGCATATATGCATACTCGTCAAACGTGAATTTTGTATTGTGAGTTAATCCTTGTGTAGTTTTATGATGTTCCTATCTCATTGTTGCAACACGTTACCCTTTATTTCTAGACTTCTAGTTAATTTTTTTCCTTCGAATTTGGTTTCTTTATGTGATGGATCATGGATTCATTTTCGTAGGAAAAGTAGGGATTTATATCCATCGATTAAAAAAAGCTGTAGAGATGTCGATTGCATTACACACACTCTTGACCTCCAATCACATGATAGAAACTCCAACAATTGCACCACATCTCCCTTTCAACTGAAGCACAACTTTTGTTTATAATTATAAAAATTAAAACAAAATATATGGAATGCAAGTTTAGCAAGAGGTAGATCACAAGTCTCGTGGTTTCAGTCCATCATATTAAATGATGGGAGATAGACGAAGACATGAACCAGAAGATCAAAGTAGGATAGATGGAATTAAGATATGTTTGGAGTGTGAATACAGTAGTGTCACTCAAGCATAAAGACATGTTTACCACAAAACTATAAGCTCTGCATTGTTGTGCGAAGTGTGAACCGTGTCAGATAGTAAATAGTCAATAAAAAGTAAGTTCAGAATAAGGATGCATCAAATTAATCATTAAAAAGAAAGTTGAAGTAGCTCTCATCGTAGATTTTTTTTCTTCTTCCATCTTAGGTAGTTTAAACTTTAAACATGTGCAAAAAGATTCGTAAAAACATCAATAACGGTTGAGCAAATGAAGGATAGACTAATAATTAAAAGTAGAGTAAGGTCAAAGAAAGCAATAGGTTAAATTATTATGAATTTAAATGGTTGATCTTTAAACATGGTGTATGACAAGAAGTTATGGCATCGTTTGATCCTTGTAGTCAATCCCACGTAGTGAGAAAACAATTTTCTGGTTGTCGTTAACCATTAATACAAATACTATTTGTTTGGTCATATGAGGCAAAATTATTCTGAACCTTAAATGTAGGACAAGTATTTGTTTGCAATCCGATCTTTAGAGATTTAAGATCTATTATATGTTTACTGAACTCAGTCGACAATGAAAATGAATTCATTGTGCAGTCAAAATGCTATTCAACTAGACGAGAAGGAGAAAAGGGAAAAAGAAATGAGATTAAAGATTATTGAGGAAGCTGAGGATTACAAAGTGGGTTTCTATGAGAAAAGGAAGCTCAATGTTGAGACAAACAAGGTTCAAAACAGAGAAAGGGAGAAGGTAATATTTACACACCTACATTATCATTACTTTTTACAATGTGATTTTTGTTCCGTTCTTTTAATTTTTAGAGATGAACTATGTTTGTGGAACAGTTATACTTGGCCAATCAAGAGAATTTTCACAAAGAGGCTGACAAAAATTACTGGAAAGCAATTGGGGAGATAATTCCCCGTGAGGTTGCCAACATTGAGAAGAAAAGAGGCAAAAAGGATCAGGATAAGAATCCATCAGTTACTGTCCTCCAAGGCCCAAAGCCAGGCAAACCCACCGACCTTTCTAGGATGCGGCAGATATTGTTAAAGCTGAAACATACACCACCACTTCACATGATTCCTCCTCCACCTGCACCTGCTAAAGACTCCAAAGGGAAGGACGGAAAAGAAACAGCAACTAAACCAAATGGATCAGCACCTAAACCAAATGGATCAGCACCGGAAGTTGCACCTGAATCACAACCAAAGGATGCTGCCAATAACGGTACTGTAGATTCACCTCAGAAAGAAGCTCCTGCCACTGAGGAGCAGTCTGCTGCATAA

Protein sequence

>MS.gene052494.t1

MSFTVNEDHFTAGDDDNYSGYGGFSSYSAEDVPVDHTTAAPESPDVFGFSDQDPSYAQSPFEPVHVMENGNGYGGHDDDVFVSDGPVLPPPAEMEPEEGNVLREWRRQNAIQLDEKEKREKEMRLKIIEEAEDYKVGFYEKRKLNVETNKVQNREREKLYLANQENFHKEADKNYWKAIGEIIPREVANIEKKRGKKDQDKNPSVTVLQGPKPGKPTDLSRMRQILLKLKHTPPLHMIPPPPAPAKDSKGKDGKETATKPNGSAPKPNGSAPEVAPESQPKDAANNGTVDSPQKEAPATEEQSAA