Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44615.t1 | XP_024630170.1 | 65.6 | 732 | 19 | 2 | 1 | 499 | 1 | 732 | 2.00E-250 | 874.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44615.t1 | Q9SZL8 | 20.0 | 571 | 221 | 6 | 7 | 341 | 70 | 640 | 1.3e-29 | 132.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44615.t1 | A0A396JHA3 | 45.4 | 593 | 91 | 2 | 1 | 360 | 1 | 593 | 2.1e-129 | 472.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene44615.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05771 | MS.gene44615 | 0.972266 | 1.74E-134 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44615.t1 | MTR_7g074790 | 83.133 | 166 | 10 | 1 | 1 | 166 | 1 | 148 | 5.18e-92 | 280 |
| MS.gene44615.t1 | MTR_7g074790 | 90.741 | 54 | 5 | 0 | 444 | 497 | 157 | 210 | 8.99e-27 | 108 |
| MS.gene44615.t1 | MTR_5g039760 | 55.689 | 167 | 49 | 2 | 1 | 166 | 1 | 143 | 3.09e-53 | 178 |
| MS.gene44615.t1 | MTR_7g061980 | 66.387 | 119 | 40 | 0 | 1 | 119 | 1 | 119 | 1.84e-48 | 163 |
| MS.gene44615.t1 | MTR_0402s0040 | 27.974 | 454 | 277 | 13 | 10 | 445 | 26 | 447 | 4.73e-37 | 143 |
| MS.gene44615.t1 | MTR_3g058090 | 50.000 | 124 | 40 | 2 | 310 | 433 | 5 | 106 | 1.79e-27 | 106 |
| MS.gene44615.t1 | MTR_4g102720 | 36.076 | 158 | 67 | 2 | 6 | 163 | 3 | 126 | 2.60e-25 | 104 |
| MS.gene44615.t1 | MTR_5g015480 | 35.593 | 177 | 102 | 5 | 10 | 182 | 56 | 224 | 1.05e-20 | 92.0 |
| MS.gene44615.t1 | MTR_4g069880 | 58.824 | 68 | 28 | 0 | 1 | 68 | 1 | 68 | 8.25e-20 | 83.6 |
| MS.gene44615.t1 | MTR_1g019850 | 35.664 | 143 | 79 | 4 | 3 | 141 | 63 | 196 | 7.81e-17 | 80.5 |
| MS.gene44615.t1 | MTR_2g099430 | 47.674 | 86 | 43 | 2 | 35 | 119 | 28 | 112 | 9.06e-15 | 70.9 |
| MS.gene44615.t1 | MTR_6g017200 | 44.578 | 83 | 44 | 2 | 10 | 91 | 58 | 139 | 1.15e-13 | 68.9 |
| MS.gene44615.t1 | MTR_2g070590 | 40.385 | 104 | 58 | 3 | 10 | 110 | 17 | 119 | 1.17e-13 | 68.2 |
| MS.gene44615.t1 | MTR_5g045210 | 34.653 | 101 | 63 | 2 | 312 | 410 | 20 | 119 | 4.75e-13 | 68.6 |
| MS.gene44615.t1 | MTR_7g113010 | 39.370 | 127 | 61 | 3 | 10 | 134 | 457 | 569 | 1.28e-12 | 70.5 |
| MS.gene44615.t1 | MTR_6g022080 | 29.605 | 152 | 102 | 4 | 16 | 163 | 91 | 241 | 1.41e-12 | 68.2 |
| MS.gene44615.t1 | MTR_6g051425 | 26.630 | 184 | 121 | 6 | 9 | 180 | 13 | 194 | 5.79e-12 | 67.4 |
| MS.gene44615.t1 | MTR_1g070355 | 27.215 | 158 | 108 | 3 | 14 | 166 | 78 | 233 | 8.16e-12 | 68.2 |
| MS.gene44615.t1 | MTR_5g076070 | 26.738 | 187 | 123 | 4 | 13 | 193 | 56 | 234 | 2.14e-11 | 65.1 |
| MS.gene44615.t1 | MTR_1g057920 | 43.373 | 83 | 45 | 2 | 10 | 91 | 34 | 115 | 2.38e-11 | 61.6 |
| MS.gene44615.t1 | MTR_2g098880 | 35.593 | 118 | 65 | 4 | 2 | 112 | 53 | 166 | 6.67e-11 | 63.2 |
| MS.gene44615.t1 | MTR_2g098880 | 35.593 | 118 | 65 | 4 | 2 | 112 | 65 | 178 | 8.26e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44615.t1 | AT4G38180 | 34.031 | 191 | 119 | 3 | 7 | 190 | 70 | 260 | 1.06e-19 | 93.2 |
| MS.gene44615.t1 | AT4G38180 | 28.814 | 118 | 84 | 0 | 172 | 289 | 398 | 515 | 4.15e-15 | 79.0 |
| MS.gene44615.t1 | AT3G22170 | 28.261 | 184 | 123 | 3 | 170 | 346 | 381 | 562 | 2.97e-16 | 82.4 |
| MS.gene44615.t1 | AT3G22170 | 28.261 | 184 | 123 | 3 | 170 | 346 | 381 | 562 | 2.97e-16 | 82.4 |
| MS.gene44615.t1 | AT3G59470 | 40.187 | 107 | 56 | 4 | 9 | 111 | 69 | 171 | 6.68e-13 | 69.3 |
| MS.gene44615.t1 | AT3G59470 | 40.187 | 107 | 56 | 4 | 9 | 111 | 69 | 171 | 6.68e-13 | 69.3 |
| MS.gene44615.t1 | AT3G59470 | 40.187 | 107 | 56 | 4 | 9 | 111 | 81 | 183 | 7.85e-13 | 69.3 |
| MS.gene44615.t1 | AT4G15090 | 23.438 | 128 | 98 | 0 | 170 | 297 | 372 | 499 | 1.02e-12 | 71.2 |
| MS.gene44615.t1 | AT4G15090 | 29.814 | 161 | 109 | 4 | 3 | 161 | 44 | 202 | 4.56e-11 | 65.9 |
| MS.gene44615.t1 | AT4G15090 | 23.438 | 128 | 98 | 0 | 170 | 297 | 372 | 499 | 1.02e-12 | 71.2 |
| MS.gene44615.t1 | AT4G15090 | 29.814 | 161 | 109 | 4 | 3 | 161 | 44 | 202 | 4.56e-11 | 65.9 |
| MS.gene44615.t1 | AT4G15090 | 23.438 | 128 | 98 | 0 | 170 | 297 | 372 | 499 | 1.02e-12 | 71.2 |
| MS.gene44615.t1 | AT4G15090 | 29.814 | 161 | 109 | 4 | 3 | 161 | 44 | 202 | 4.56e-11 | 65.9 |
| MS.gene44615.t1 | AT4G15090 | 23.438 | 128 | 98 | 0 | 170 | 297 | 372 | 499 | 1.02e-12 | 71.2 |
| MS.gene44615.t1 | AT4G15090 | 29.814 | 161 | 109 | 4 | 3 | 161 | 44 | 202 | 4.56e-11 | 65.9 |
| MS.gene44615.t1 | AT4G15090 | 23.438 | 128 | 98 | 0 | 170 | 297 | 372 | 499 | 1.02e-12 | 71.2 |
| MS.gene44615.t1 | AT4G15090 | 29.814 | 161 | 109 | 4 | 3 | 161 | 44 | 202 | 4.56e-11 | 65.9 |
| MS.gene44615.t1 | AT5G18960 | 40.385 | 104 | 46 | 3 | 9 | 110 | 42 | 131 | 1.09e-12 | 71.2 |
| MS.gene44615.t1 | AT5G18960 | 40.385 | 104 | 46 | 3 | 9 | 110 | 42 | 131 | 1.09e-12 | 71.2 |
| MS.gene44615.t1 | AT3G06250 | 39.423 | 104 | 47 | 3 | 9 | 110 | 27 | 116 | 4.16e-12 | 69.3 |
| MS.gene44615.t1 | AT3G06250 | 41.558 | 77 | 45 | 0 | 295 | 371 | 664 | 740 | 5.57e-11 | 65.9 |
| MS.gene44615.t1 | AT3G06250 | 39.423 | 104 | 47 | 3 | 9 | 110 | 27 | 116 | 4.16e-12 | 69.3 |
| MS.gene44615.t1 | AT3G06250 | 41.558 | 77 | 45 | 0 | 295 | 371 | 664 | 740 | 5.57e-11 | 65.9 |
| MS.gene44615.t1 | AT3G06250 | 39.423 | 104 | 47 | 3 | 9 | 110 | 27 | 116 | 4.16e-12 | 69.3 |
| MS.gene44615.t1 | AT3G06250 | 41.558 | 77 | 45 | 0 | 295 | 371 | 664 | 740 | 5.57e-11 | 65.9 |
| MS.gene44615.t1 | AT4G38170 | 23.077 | 130 | 97 | 1 | 162 | 291 | 156 | 282 | 5.42e-12 | 68.6 |
| MS.gene44615.t1 | AT1G76320 | 24.476 | 143 | 106 | 1 | 181 | 321 | 320 | 462 | 1.61e-11 | 67.4 |
| MS.gene44615.t1 | AT1G76320 | 24.476 | 143 | 106 | 1 | 181 | 321 | 320 | 462 | 1.61e-11 | 67.4 |
| MS.gene44615.t1 | AT1G76320 | 24.476 | 143 | 106 | 1 | 181 | 321 | 320 | 462 | 1.68e-11 | 67.4 |
| MS.gene44615.t1 | AT1G76320 | 24.476 | 143 | 106 | 1 | 181 | 321 | 320 | 462 | 2.37e-11 | 66.6 |
Find 82 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTTGTCTAAAACCGAATT+TGG | 0.140326 | 7.3:-83874611 | MS.gene44615:CDS |
| ATTACACTTTCAAGTATAAA+TGG | 0.233543 | 7.3:-83875594 | MS.gene44615:CDS |
| AGCAAGTGCATGTATGAAAT+TGG | 0.242669 | 7.3:-83874817 | MS.gene44615:CDS |
| TCAAATTTCATTCCAAGTTT+TGG | 0.248103 | 7.3:+83875828 | None:intergenic |
| GATTGAGCGTGTTTACTTGC+AGG | 0.306060 | 7.3:+83873812 | None:intergenic |
| CGAAATGTTTGAAGAATTGC+AGG | 0.320035 | 7.3:+83874584 | None:intergenic |
| GTCAATGAACATAATCTTCA+TGG | 0.336161 | 7.3:-83874757 | MS.gene44615:CDS |
| TAGAGAATTAACAACTAATA+TGG | 0.346505 | 7.3:-83873676 | MS.gene44615:CDS |
| CTTGAATCCCTTTGGTTGCA+TGG | 0.357010 | 7.3:+83873907 | None:intergenic |
| TGGCCGATGACTCTGGATTA+AGG | 0.372007 | 7.3:-83875452 | MS.gene44615:CDS |
| CTTCTTAAAATATACCTATC+AGG | 0.372035 | 7.3:+83874193 | None:intergenic |
| GTGTTACACAACTATGTTGA+TGG | 0.375026 | 7.3:-83873588 | MS.gene44615:intron |
| CAGAATGGAATTAAACATCT+TGG | 0.376869 | 7.3:-83874880 | MS.gene44615:CDS |
| GGTTGTTTCTTGAATCCCTT+TGG | 0.400183 | 7.3:+83873899 | None:intergenic |
| TGTAAGAAGTATGATACATT+TGG | 0.401457 | 7.3:-83874271 | MS.gene44615:CDS |
| AACATTTCGAAAGAGTTGTT+GGG | 0.402715 | 7.3:-83874570 | MS.gene44615:CDS |
| TGGCTTCTTCAAATGATGAT+TGG | 0.406507 | 7.3:-83875854 | MS.gene44615:CDS |
| TCTCTTGATTTAGTAGATCA+TGG | 0.415252 | 7.3:+83875535 | None:intergenic |
| TTCAAGTATAAATGGAAAGT+TGG | 0.416231 | 7.3:-83875586 | MS.gene44615:CDS |
| ATCTTGCACAATGCCACAAC+GGG | 0.416657 | 7.3:+83874156 | None:intergenic |
| GAATTAAACATCTTGGAAAC+AGG | 0.417860 | 7.3:-83874873 | MS.gene44615:CDS |
| TGAGAAAGCTTGGTTGGACT+TGG | 0.419812 | 7.3:-83874779 | MS.gene44615:CDS |
| AAACATTTCGAAAGAGTTGT+TGG | 0.420314 | 7.3:-83874571 | MS.gene44615:CDS |
| CGCTTAGTTCCCTTTGAGCC+GGG | 0.421477 | 7.3:+83873878 | None:intergenic |
| TGTTGTCTAAAACCGAATTT+GGG | 0.422476 | 7.3:-83874610 | MS.gene44615:CDS |
| ATAATCTTCATGGTTCATCT+TGG | 0.427912 | 7.3:-83874747 | MS.gene44615:CDS |
| TATACCTGTGAACTTCTTTG+AGG | 0.430697 | 7.3:+83873776 | None:intergenic |
| AATTGCAGGATACCCAAATT+CGG | 0.433675 | 7.3:+83874598 | None:intergenic |
| ATGTAGGTTTGTTTGTTGTA+AGG | 0.436082 | 7.3:-83875700 | MS.gene44615:CDS |
| TATGCTTTACGTGAGGGCTT+CGG | 0.441084 | 7.3:-83875771 | MS.gene44615:CDS |
| ATTCGATTTCTAGATAACTT+AGG | 0.444832 | 7.3:+83874106 | None:intergenic |
| ATTTGAGCTGAACGATGTTA+AGG | 0.448624 | 7.3:-83874221 | MS.gene44615:CDS |
| TTAGAGTACGCTTTACAAAC+AGG | 0.450669 | 7.3:-83875746 | MS.gene44615:CDS |
| TCGCTTAGTTCCCTTTGAGC+CGG | 0.456094 | 7.3:+83873877 | None:intergenic |
| AAGAAACAACCCGGCTCAAA+GGG | 0.456155 | 7.3:-83873887 | MS.gene44615:CDS |
| GATGATTGGAAGCCAAAACT+TGG | 0.457457 | 7.3:-83875840 | MS.gene44615:CDS |
| ATTGATATGGCCGATGACTC+TGG | 0.457637 | 7.3:-83875459 | MS.gene44615:CDS |
| CCAATATTTGTATCATCAAA+AGG | 0.459917 | 7.3:+83873472 | None:intergenic |
| ACAAGCATATGAGATTGATA+TGG | 0.463781 | 7.3:-83875472 | MS.gene44615:CDS |
| ACATATCCTCACGTGCTAGC+GGG | 0.476750 | 7.3:+83873613 | None:intergenic |
| AGGTTTGTTTGTTGTAAGGA+AGG | 0.486878 | 7.3:-83875696 | MS.gene44615:CDS |
| TCATTGTCTCTACCTTGTGT+TGG | 0.489570 | 7.3:+83873962 | None:intergenic |
| TTTGTTGTAAGGAAGGAATA+CGG | 0.490669 | 7.3:-83875689 | MS.gene44615:CDS |
| ACCTGTGAACTTCTTTGAGG+TGG | 0.503799 | 7.3:+83873779 | None:intergenic |
| GCATCAGAACTCTCAAATGA+TGG | 0.506034 | 7.3:+83873929 | None:intergenic |
| ATGTTAAGGTGATTCCTGAT+AGG | 0.509691 | 7.3:-83874207 | MS.gene44615:CDS |
| GAGGATAAATGTGCATATGA+AGG | 0.510730 | 7.3:-83875660 | MS.gene44615:CDS |
| CATATCCTCACGTGCTAGCG+GGG | 0.512934 | 7.3:+83873614 | None:intergenic |
| CTTGCTTATGCTTTACGTGA+GGG | 0.518622 | 7.3:-83875777 | MS.gene44615:CDS |
| CAAGAAACAACCCGGCTCAA+AGG | 0.525961 | 7.3:-83873888 | MS.gene44615:CDS |
| ACGGTAGTGTATCGTCATGT+AGG | 0.541762 | 7.3:-83875716 | MS.gene44615:CDS |
| GGAAGGAATACGGAAGAAAG+AGG | 0.542787 | 7.3:-83875679 | MS.gene44615:CDS |
| CCTTGCTTATGCTTTACGTG+AGG | 0.544741 | 7.3:-83875778 | MS.gene44615:CDS |
| AACTTCTTTGAGGTGGGACA+CGG | 0.545922 | 7.3:+83873786 | None:intergenic |
| ATGGGCTGCATGTTATATGA+AGG | 0.546460 | 7.3:-83874695 | MS.gene44615:CDS |
| TTCTGATGCCATGCAACCAA+AGG | 0.548134 | 7.3:-83873915 | MS.gene44615:CDS |
| CAACTTATGAGCACACATGC+AGG | 0.548940 | 7.3:-83875414 | MS.gene44615:CDS |
| GAAATTTGACACTAGAGAAG+AGG | 0.556802 | 7.3:-83875814 | MS.gene44615:CDS |
| CTGCCTTAATCCAGAGTCAT+CGG | 0.562647 | 7.3:+83875449 | None:intergenic |
| GCAGGGCATAGCGCTAATGT+TGG | 0.568818 | 7.3:-83875396 | MS.gene44615:CDS |
| CTTGGAAACAGGATGAAGAA+AGG | 0.571819 | 7.3:-83874862 | MS.gene44615:CDS |
| TTAACAACTAATATGGTCGA+TGG | 0.578359 | 7.3:-83873669 | MS.gene44615:CDS |
| CCCACCTCAAAGAAGTTCAC+AGG | 0.579192 | 7.3:-83873780 | MS.gene44615:intron |
| CCTGTGAACTTCTTTGAGGT+GGG | 0.581279 | 7.3:+83873780 | None:intergenic |
| ATGAAGGAAGCATTAACACT+TGG | 0.584329 | 7.3:-83874679 | MS.gene44615:CDS |
| TCTGATGCCATGCAACCAAA+GGG | 0.584367 | 7.3:-83873914 | MS.gene44615:CDS |
| AGTCCTCACATAAGCTTGCA+AGG | 0.585698 | 7.3:-83874513 | MS.gene44615:intron |
| AACTTATGAGCACACATGCA+GGG | 0.596381 | 7.3:-83875413 | MS.gene44615:CDS |
| AATCTTGCACAATGCCACAA+CGG | 0.597437 | 7.3:+83874155 | None:intergenic |
| ACATTTCGAAAGAGTTGTTG+GGG | 0.600812 | 7.3:-83874569 | MS.gene44615:CDS |
| AACATATCCTCACGTGCTAG+CGG | 0.615108 | 7.3:+83873612 | None:intergenic |
| CGCTAATGTTGGATTTACAG+AGG | 0.620951 | 7.3:-83875385 | MS.gene44615:CDS |
| TGACTCTGGATTAAGGCAGA+AGG | 0.626414 | 7.3:-83875445 | MS.gene44615:CDS |
| TGTCTCTAAGTTCATTAGAG+CGG | 0.630054 | 7.3:-83874071 | MS.gene44615:CDS |
| ATATCCTCACGTGCTAGCGG+GGG | 0.659146 | 7.3:+83873615 | None:intergenic |
| TGGACAAGAGAAGCCCGTTG+TGG | 0.666264 | 7.3:-83874169 | MS.gene44615:CDS |
| CCTCACGTAAAGCATAAGCA+AGG | 0.669280 | 7.3:+83875778 | None:intergenic |
| TAATGTTGGATTTACAGAGG+TGG | 0.672534 | 7.3:-83875382 | MS.gene44615:CDS |
| TAACCTTGCAAGCTTATGTG+AGG | 0.683097 | 7.3:+83874510 | None:intergenic |
| TTTACAAACAGGAAGAAAGA+CGG | 0.687186 | 7.3:-83875735 | MS.gene44615:CDS |
| AAGGGATTCAAGAAACAACC+CGG | 0.691658 | 7.3:-83873896 | MS.gene44615:CDS |
| GTAACAGAATGTCCAACACA+AGG | 0.694581 | 7.3:-83873974 | MS.gene44615:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTGTTATTAATGT+AGG | - | chr7.3:83875845-83875864 | MS.gene44615:CDS | 10.0% |
| !! | TAGAGAATTAACAACTAATA+TGG | - | chr7.3:83875666-83875685 | MS.gene44615:CDS | 20.0% |
| !!! | ATTACACTTTCAAGTATAAA+TGG | - | chr7.3:83873748-83873767 | MS.gene44615:intron | 20.0% |
| !!! | TAATGTTGCATAATCATTTT+AGG | - | chr7.3:83875642-83875661 | MS.gene44615:CDS | 20.0% |
| ! | AGACAATTCCATCATTTAAA+TGG | - | chr7.3:83874301-83874320 | MS.gene44615:intron | 25.0% |
| ! | CTTCTTAAAATATACCTATC+AGG | + | chr7.3:83875152-83875171 | None:intergenic | 25.0% |
| ! | TACAAAAAGACAAAGAAGTA+TGG | - | chr7.3:83874002-83874021 | MS.gene44615:CDS | 25.0% |
| ! | TCAAACAACCATTTAAATGA+TGG | + | chr7.3:83874312-83874331 | None:intergenic | 25.0% |
| ! | TTCAAGTATAAATGGAAAGT+TGG | - | chr7.3:83873756-83873775 | MS.gene44615:intron | 25.0% |
| !! | ATTCGATTTCTAGATAACTT+AGG | + | chr7.3:83875239-83875258 | None:intergenic | 25.0% |
| !! | TCAAATTTCATTCCAAGTTT+TGG | + | chr7.3:83873517-83873536 | None:intergenic | 25.0% |
| !! | TGTAAGAAGTATGATACATT+TGG | - | chr7.3:83875071-83875090 | MS.gene44615:intron | 25.0% |
| !!! | ATAGGTATATTTTAAGAAGG+TGG | - | chr7.3:83875153-83875172 | MS.gene44615:intron | 25.0% |
| !!! | CTGATAGGTATATTTTAAGA+AGG | - | chr7.3:83875150-83875169 | MS.gene44615:intron | 25.0% |
| AAAAAAAGCAAGTGGTCTAT+TGG | + | chr7.3:83874223-83874242 | None:intergenic | 30.0% | |
| AAACATTTCGAAAGAGTTGT+TGG | - | chr7.3:83874771-83874790 | MS.gene44615:CDS | 30.0% | |
| AAACCAGAAAAAAAAGCAAG+TGG | + | chr7.3:83874231-83874250 | None:intergenic | 30.0% | |
| AAATGATCGTACCTCTATAA+TGG | + | chr7.3:83874257-83874276 | None:intergenic | 30.0% | |
| AACAGATTACAAATGTGTTC+TGG | - | chr7.3:83874118-83874137 | MS.gene44615:CDS | 30.0% | |
| AACATTTCGAAAGAGTTGTT+GGG | - | chr7.3:83874772-83874791 | MS.gene44615:CDS | 30.0% | |
| ACAAGCATATGAGATTGATA+TGG | - | chr7.3:83873870-83873889 | MS.gene44615:CDS | 30.0% | |
| ATAATCTTCATGGTTCATCT+TGG | - | chr7.3:83874595-83874614 | MS.gene44615:CDS | 30.0% | |
| CAAATATGATCTTGGATTAC+GGG | - | chr7.3:83874148-83874167 | MS.gene44615:CDS | 30.0% | |
| CAGAATGGAATTAAACATCT+TGG | - | chr7.3:83874462-83874481 | MS.gene44615:intron | 30.0% | |
| CATCTGATATGCATAAAAGA+AGG | + | chr7.3:83874088-83874107 | None:intergenic | 30.0% | |
| CTTCTTACAACTACAAGTAA+TGG | + | chr7.3:83875060-83875079 | None:intergenic | 30.0% | |
| GAATTAAACATCTTGGAAAC+AGG | - | chr7.3:83874469-83874488 | MS.gene44615:intron | 30.0% | |
| GCAAATATGATCTTGGATTA+CGG | - | chr7.3:83874147-83874166 | MS.gene44615:CDS | 30.0% | |
| GTCAATGAACATAATCTTCA+TGG | - | chr7.3:83874585-83874604 | MS.gene44615:CDS | 30.0% | |
| GTGCATATGAAGGAAAAATT+CGG | - | chr7.3:83873692-83873711 | MS.gene44615:intron | 30.0% | |
| TCTCTTGATTTAGTAGATCA+TGG | + | chr7.3:83873810-83873829 | None:intergenic | 30.0% | |
| TGATATGCATAAAAGAAGGA+CGG | + | chr7.3:83874084-83874103 | None:intergenic | 30.0% | |
| TTAACAACTAATATGGTCGA+TGG | - | chr7.3:83875673-83875692 | MS.gene44615:CDS | 30.0% | |
| TTTACAAACAGGAAGAAAGA+CGG | - | chr7.3:83873607-83873626 | MS.gene44615:CDS | 30.0% | |
| ! | AGAGTTAGTTTCATGTCTAA+TGG | + | chr7.3:83874964-83874983 | None:intergenic | 30.0% |
| ! | ATGTTGTCTAAAACCGAATT+TGG | - | chr7.3:83874731-83874750 | MS.gene44615:CDS | 30.0% |
| ! | CTTCTTTTATGCATATCAGA+TGG | - | chr7.3:83874086-83874105 | MS.gene44615:CDS | 30.0% |
| ! | GAGTTAGTTTCATGTCTAAT+GGG | + | chr7.3:83874963-83874982 | None:intergenic | 30.0% |
| ! | TGTTGTCTAAAACCGAATTT+GGG | - | chr7.3:83874732-83874751 | MS.gene44615:CDS | 30.0% |
| ! | TTTGTTGTAAGGAAGGAATA+CGG | - | chr7.3:83873653-83873672 | MS.gene44615:CDS | 30.0% |
| !! | ATGTAGGTTTGTTTGTTGTA+AGG | - | chr7.3:83873642-83873661 | MS.gene44615:CDS | 30.0% |
| !! | TATAGAGGTACGATCATTTT+TGG | - | chr7.3:83874258-83874277 | MS.gene44615:CDS | 30.0% |
| !!! | TTTTGGTGATGTTGTTTCAT+TGG | - | chr7.3:83874173-83874192 | MS.gene44615:CDS | 30.0% |
| AATTGCAGGATACCCAAATT+CGG | + | chr7.3:83874747-83874766 | None:intergenic | 35.0% | |
| ACATTTCGAAAGAGTTGTTG+GGG | - | chr7.3:83874773-83874792 | MS.gene44615:CDS | 35.0% | |
| AGCAAGTGCATGTATGAAAT+TGG | - | chr7.3:83874525-83874544 | MS.gene44615:CDS | 35.0% | |
| ATGTTAAGGTGATTCCTGAT+AGG | - | chr7.3:83875135-83875154 | MS.gene44615:intron | 35.0% | |
| ATTTGAGCTGAACGATGTTA+AGG | - | chr7.3:83875121-83875140 | MS.gene44615:intron | 35.0% | |
| CGAAATGTTTGAAGAATTGC+AGG | + | chr7.3:83874761-83874780 | None:intergenic | 35.0% | |
| GAAATTTGACACTAGAGAAG+AGG | - | chr7.3:83873528-83873547 | MS.gene44615:intron | 35.0% | |
| GAGGATAAATGTGCATATGA+AGG | - | chr7.3:83873682-83873701 | MS.gene44615:intron | 35.0% | |
| GTGTGATGCAAATATGATCT+TGG | - | chr7.3:83874140-83874159 | MS.gene44615:CDS | 35.0% | |
| GTGTTACACAACTATGTTGA+TGG | - | chr7.3:83875754-83875773 | MS.gene44615:CDS | 35.0% | |
| TAATGTTGGATTTACAGAGG+TGG | - | chr7.3:83873960-83873979 | MS.gene44615:CDS | 35.0% | |
| TATACCTGTGAACTTCTTTG+AGG | + | chr7.3:83875569-83875588 | None:intergenic | 35.0% | |
| TATGAAGGAAAAATTCGGAG+AGG | - | chr7.3:83873697-83873716 | MS.gene44615:intron | 35.0% | |
| TCACCATTACTACTCCAAAT+GGG | - | chr7.3:83874867-83874886 | MS.gene44615:CDS | 35.0% | |
| TGGCTTCTTCAAATGATGAT+TGG | - | chr7.3:83873488-83873507 | MS.gene44615:intron | 35.0% | |
| TGTCTCTAAGTTCATTAGAG+CGG | - | chr7.3:83875271-83875290 | MS.gene44615:intron | 35.0% | |
| TTAGAGTACGCTTTACAAAC+AGG | - | chr7.3:83873596-83873615 | MS.gene44615:CDS | 35.0% | |
| TTCACCATTACTACTCCAAA+TGG | - | chr7.3:83874866-83874885 | MS.gene44615:CDS | 35.0% | |
| ! | AGACAAAGAAGTATGGTGTA+TGG | - | chr7.3:83874009-83874028 | MS.gene44615:CDS | 35.0% |
| ! | ATCACTAATGAGAAGCATGA+AGG | - | chr7.3:83874999-83875018 | MS.gene44615:intron | 35.0% |
| ! | ATCTTGGATTACGGGTATTT+TGG | - | chr7.3:83874156-83874175 | MS.gene44615:CDS | 35.0% |
| ! | GTATTTTCAACGACAGTTGT+TGG | - | chr7.3:83874053-83874072 | MS.gene44615:CDS | 35.0% |
| ! | TCTGGTTTCAACCATTATAG+AGG | - | chr7.3:83874243-83874262 | MS.gene44615:CDS | 35.0% |
| ! | TGGCATTGTGCAAGATTTTA+GGG | - | chr7.3:83875193-83875212 | MS.gene44615:intron | 35.0% |
| !! | AAGCAGATTTTGAGAAAGCT+TGG | - | chr7.3:83874553-83874572 | MS.gene44615:CDS | 35.0% |
| !! | AGATTTTGAGAAAGCTTGGT+TGG | - | chr7.3:83874557-83874576 | MS.gene44615:CDS | 35.0% |
| !! | AGGTTTGTTTGTTGTAAGGA+AGG | - | chr7.3:83873646-83873665 | MS.gene44615:CDS | 35.0% |
| !! | ATGAAGGAAGCATTAACACT+TGG | - | chr7.3:83874663-83874682 | MS.gene44615:CDS | 35.0% |
| !!! | AGACCACTTGCTTTTTTTTC+TGG | - | chr7.3:83874225-83874244 | MS.gene44615:CDS | 35.0% |
| AACTTATGAGCACACATGCA+GGG | - | chr7.3:83873929-83873948 | MS.gene44615:CDS | 40.0% | |
| AAGGGATTCAAGAAACAACC+CGG | - | chr7.3:83875446-83875465 | MS.gene44615:CDS | 40.0% | |
| AATCTTGCACAATGCCACAA+CGG | + | chr7.3:83875190-83875209 | None:intergenic | 40.0% | |
| ACCAAAGTCAAGCAATGTCT+AGG | - | chr7.3:83874382-83874401 | MS.gene44615:intron | 40.0% | |
| CCAAAGTCAAGCAATGTCTA+GGG | - | chr7.3:83874383-83874402 | MS.gene44615:intron | 40.0% | |
| CGCTAATGTTGGATTTACAG+AGG | - | chr7.3:83873957-83873976 | MS.gene44615:CDS | 40.0% | |
| CTTGCTTATGCTTTACGTGA+GGG | - | chr7.3:83873565-83873584 | MS.gene44615:intron | 40.0% | |
| CTTGGAAACAGGATGAAGAA+AGG | - | chr7.3:83874480-83874499 | MS.gene44615:intron | 40.0% | |
| GATGATTGGAAGCCAAAACT+TGG | - | chr7.3:83873502-83873521 | MS.gene44615:intron | 40.0% | |
| GCATCAGAACTCTCAAATGA+TGG | + | chr7.3:83875416-83875435 | None:intergenic | 40.0% | |
| GTAACAGAATGTCCAACACA+AGG | - | chr7.3:83875368-83875387 | MS.gene44615:intron | 40.0% | |
| GTGTGTATATCTCTCCCATT+TGG | + | chr7.3:83874884-83874903 | None:intergenic | 40.0% | |
| TAACCTTGCAAGCTTATGTG+AGG | + | chr7.3:83874835-83874854 | None:intergenic | 40.0% | |
| TCATTGTCTCTACCTTGTGT+TGG | + | chr7.3:83875383-83875402 | None:intergenic | 40.0% | |
| ! | ATGGGCTGCATGTTATATGA+AGG | - | chr7.3:83874647-83874666 | MS.gene44615:CDS | 40.0% |
| ! | GGCATTGTGCAAGATTTTAG+GGG | - | chr7.3:83875194-83875213 | MS.gene44615:intron | 40.0% |
| ! | GTGGCATTGTGCAAGATTTT+AGG | - | chr7.3:83875192-83875211 | MS.gene44615:intron | 40.0% |
| ! | TCTCCCATTTGGAGTAGTAA+TGG | + | chr7.3:83874873-83874892 | None:intergenic | 40.0% |
| !! | GCAAGATTTTAGGGGAAAAG+AGG | - | chr7.3:83875202-83875221 | MS.gene44615:intron | 40.0% |
| !! | GGTTGTTTCTTGAATCCCTT+TGG | + | chr7.3:83875446-83875465 | None:intergenic | 40.0% |
| AACATATCCTCACGTGCTAG+CGG | + | chr7.3:83875733-83875752 | None:intergenic | 45.0% | |
| AAGAAACAACCCGGCTCAAA+GGG | - | chr7.3:83875455-83875474 | MS.gene44615:CDS | 45.0% | |
| AAGTGGTCTATTGGCATCGT+TGG | + | chr7.3:83874214-83874233 | None:intergenic | 45.0% | |
| ACGGTAGTGTATCGTCATGT+AGG | - | chr7.3:83873626-83873645 | MS.gene44615:CDS | 45.0% | |
| AGTCCTCACATAAGCTTGCA+AGG | - | chr7.3:83874829-83874848 | MS.gene44615:CDS | 45.0% | |
| AGTGCCATGTGCATAAACCA+TGG | + | chr7.3:83874437-83874456 | None:intergenic | 45.0% | |
| ATCTTGCACAATGCCACAAC+GGG | + | chr7.3:83875189-83875208 | None:intergenic | 45.0% | |
| ATTGATATGGCCGATGACTC+TGG | - | chr7.3:83873883-83873902 | MS.gene44615:CDS | 45.0% | |
| CAACTTATGAGCACACATGC+AGG | - | chr7.3:83873928-83873947 | MS.gene44615:CDS | 45.0% | |
| CATAAACCATGGTGAGTCTC+AGG | + | chr7.3:83874426-83874445 | None:intergenic | 45.0% | |
| CCCTAGACATTGCTTGACTT+TGG | + | chr7.3:83874386-83874405 | None:intergenic | 45.0% | |
| CCTCACGTAAAGCATAAGCA+AGG | + | chr7.3:83873567-83873586 | None:intergenic | 45.0% | |
| CCTTGCTTATGCTTTACGTG+AGG | - | chr7.3:83873564-83873583 | MS.gene44615:intron | 45.0% | |
| CTCACCATGGTTTATGCACA+TGG | - | chr7.3:83874430-83874449 | MS.gene44615:intron | 45.0% | |
| CTGCCTTAATCCAGAGTCAT+CGG | + | chr7.3:83873896-83873915 | None:intergenic | 45.0% | |
| CTTGAATCCCTTTGGTTGCA+TGG | + | chr7.3:83875438-83875457 | None:intergenic | 45.0% | |
| GATTGAGCGTGTTTACTTGC+AGG | + | chr7.3:83875533-83875552 | None:intergenic | 45.0% | |
| GGAAGGAATACGGAAGAAAG+AGG | - | chr7.3:83873663-83873682 | MS.gene44615:CDS | 45.0% | |
| GGCATCGTTGGTACAATATG+TGG | + | chr7.3:83874202-83874221 | None:intergenic | 45.0% | |
| GGTCAGTGAAGATCGTCTTT+GGG | + | chr7.3:83874365-83874384 | None:intergenic | 45.0% | |
| TATGCTTTACGTGAGGGCTT+CGG | - | chr7.3:83873571-83873590 | MS.gene44615:intron | 45.0% | |
| TCTGATGCCATGCAACCAAA+GGG | - | chr7.3:83875428-83875447 | MS.gene44615:CDS | 45.0% | |
| TGACTCTGGATTAAGGCAGA+AGG | - | chr7.3:83873897-83873916 | MS.gene44615:CDS | 45.0% | |
| TGAGAAAGCTTGGTTGGACT+TGG | - | chr7.3:83874563-83874582 | MS.gene44615:CDS | 45.0% | |
| TGGTCAGTGAAGATCGTCTT+TGG | + | chr7.3:83874366-83874385 | None:intergenic | 45.0% | |
| TTCTGATGCCATGCAACCAA+AGG | - | chr7.3:83875427-83875446 | MS.gene44615:CDS | 45.0% | |
| ! | ACATGGCACTTGTTGCAGAA+TGG | - | chr7.3:83874447-83874466 | MS.gene44615:intron | 45.0% |
| ! | ACCTGTGAACTTCTTTGAGG+TGG | + | chr7.3:83875566-83875585 | None:intergenic | 45.0% |
| !! | AACTTCTTTGAGGTGGGACA+CGG | + | chr7.3:83875559-83875578 | None:intergenic | 45.0% |
| !! | CCTGTGAACTTCTTTGAGGT+GGG | + | chr7.3:83875565-83875584 | None:intergenic | 45.0% |
| !!! | GCAGGAGCACTTCTTTTCTT+GGG | + | chr7.3:83875515-83875534 | None:intergenic | 45.0% |
| !!! | TGCAGGAGCACTTCTTTTCT+TGG | + | chr7.3:83875516-83875535 | None:intergenic | 45.0% |
| !! | TTATGAAATAAAAAAAAAAT+GGG | - | chr7.3:83874629-83874648 | MS.gene44615:CDS | 5.0% |
| !! | TTTATGAAATAAAAAAAAAA+TGG | - | chr7.3:83874628-83874647 | MS.gene44615:CDS | 5.0% |
| ACATATCCTCACGTGCTAGC+GGG | + | chr7.3:83875732-83875751 | None:intergenic | 50.0% | |
| CAAGAAACAACCCGGCTCAA+AGG | - | chr7.3:83875454-83875473 | MS.gene44615:CDS | 50.0% | |
| CCCACCTCAAAGAAGTTCAC+AGG | - | chr7.3:83875562-83875581 | MS.gene44615:CDS | 50.0% | |
| TCGCTTAGTTCCCTTTGAGC+CGG | + | chr7.3:83875468-83875487 | None:intergenic | 50.0% | |
| TGGCCGATGACTCTGGATTA+AGG | - | chr7.3:83873890-83873909 | MS.gene44615:CDS | 50.0% | |
| ! | AGTATGGTGTATGGTGACGC+TGG | - | chr7.3:83874018-83874037 | MS.gene44615:CDS | 50.0% |
| ! | TTTTCTTGGGCTGACGCTCA+AGG | + | chr7.3:83875502-83875521 | None:intergenic | 50.0% |
| ATATCCTCACGTGCTAGCGG+GGG | + | chr7.3:83875730-83875749 | None:intergenic | 55.0% | |
| CATATCCTCACGTGCTAGCG+GGG | + | chr7.3:83875731-83875750 | None:intergenic | 55.0% | |
| CGCTTAGTTCCCTTTGAGCC+GGG | + | chr7.3:83875467-83875486 | None:intergenic | 55.0% | |
| CTAGCGGGGGCTCATAAGTT+GGG | + | chr7.3:83875717-83875736 | None:intergenic | 55.0% | |
| GCAGGGCATAGCGCTAATGT+TGG | - | chr7.3:83873946-83873965 | MS.gene44615:CDS | 55.0% | |
| GTGATGCCTGAGACTCACCA+TGG | - | chr7.3:83874417-83874436 | MS.gene44615:intron | 55.0% | |
| TAGCGGGGGCTCATAAGTTG+GGG | + | chr7.3:83875716-83875735 | None:intergenic | 55.0% | |
| TGGACAAGAGAAGCCCGTTG+TGG | - | chr7.3:83875173-83875192 | MS.gene44615:intron | 55.0% | |
| GCTAGCGGGGGCTCATAAGT+TGG | + | chr7.3:83875718-83875737 | None:intergenic | 60.0% | |
| ! | AGCGGGGGCTCATAAGTTGG+GGG | + | chr7.3:83875715-83875734 | None:intergenic | 60.0% |
| ! | GGGCTCATAAGTTGGGGGCG+CGG | + | chr7.3:83875710-83875729 | None:intergenic | 65.0% |
| TGAGCCCCCGCTAGCACGTG+AGG | - | chr7.3:83875723-83875742 | MS.gene44615:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 83873487 | 83875877 | 83873487 | ID=MS.gene44615 |
| chr7.3 | mRNA | 83873487 | 83875877 | 83873487 | ID=MS.gene44615.t1;Parent=MS.gene44615 |
| chr7.3 | exon | 83875380 | 83875877 | 83875380 | ID=MS.gene44615.t1.exon1;Parent=MS.gene44615.t1 |
| chr7.3 | CDS | 83875380 | 83875877 | 83875380 | ID=cds.MS.gene44615.t1;Parent=MS.gene44615.t1 |
| chr7.3 | exon | 83874514 | 83874899 | 83874514 | ID=MS.gene44615.t1.exon2;Parent=MS.gene44615.t1 |
| chr7.3 | CDS | 83874514 | 83874899 | 83874514 | ID=cds.MS.gene44615.t1;Parent=MS.gene44615.t1 |
| chr7.3 | exon | 83873781 | 83874294 | 83873781 | ID=MS.gene44615.t1.exon3;Parent=MS.gene44615.t1 |
| chr7.3 | CDS | 83873781 | 83874294 | 83873781 | ID=cds.MS.gene44615.t1;Parent=MS.gene44615.t1 |
| chr7.3 | exon | 83873589 | 83873700 | 83873589 | ID=MS.gene44615.t1.exon4;Parent=MS.gene44615.t1 |
| chr7.3 | CDS | 83873589 | 83873700 | 83873589 | ID=cds.MS.gene44615.t1;Parent=MS.gene44615.t1 |
| chr7.3 | exon | 83873487 | 83873497 | 83873487 | ID=MS.gene44615.t1.exon5;Parent=MS.gene44615.t1 |
| chr7.3 | CDS | 83873487 | 83873497 | 83873487 | ID=cds.MS.gene44615.t1;Parent=MS.gene44615.t1 |
| Gene Sequence |
| Protein sequence |
