Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44645.t1 | GAU33476.1 | 63 | 254 | 81 | 3 | 1 | 253 | 98 | 339 | 1.90E-81 | 312.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44645.t1 | A0A2Z6MLR9 | 63.0 | 254 | 81 | 3 | 1 | 253 | 98 | 339 | 1.4e-81 | 312.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053460 | MS.gene44645 | 0.879836 | 9.00E-70 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44645.t1 | MTR_4g007830 | 46.360 | 261 | 109 | 2 | 65 | 294 | 80 | 340 | 1.92e-73 | 231 |
| MS.gene44645.t1 | MTR_1g009820 | 90.476 | 105 | 10 | 0 | 215 | 319 | 1 | 105 | 1.13e-65 | 202 |
| MS.gene44645.t1 | MTR_8g089760 | 52.229 | 157 | 73 | 1 | 140 | 294 | 1 | 157 | 3.03e-51 | 167 |
| MS.gene44645.t1 | MTR_4g040020 | 34.555 | 191 | 114 | 7 | 128 | 313 | 10 | 194 | 1.12e-28 | 110 |
| MS.gene44645.t1 | MTR_5g022270 | 35.542 | 166 | 101 | 4 | 127 | 288 | 223 | 386 | 9.67e-27 | 110 |
| MS.gene44645.t1 | MTR_2g022080 | 34.132 | 167 | 104 | 4 | 127 | 289 | 223 | 387 | 1.33e-25 | 106 |
| MS.gene44645.t1 | MTR_6g035170 | 41.176 | 68 | 39 | 1 | 128 | 194 | 183 | 250 | 3.23e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 59 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGACGTCCCAAACCTTT+TGG | 0.174160 | 7.3:-83386596 | None:intergenic |
| AACTGTTTCATTTGCCAAAA+TGG | 0.193914 | 7.3:-83386136 | None:intergenic |
| CATAAGCAAGATTTCATTAA+AGG | 0.220107 | 7.3:+83386954 | MS.gene44645:CDS |
| TTTGATGTTGGAAAAGTCTT+TGG | 0.247811 | 7.3:+83386929 | MS.gene44645:CDS |
| AATAGATGGTCCATCTAATT+TGG | 0.253635 | 7.3:-83385432 | None:intergenic |
| TGTCGTGGAATTCACCATTT+TGG | 0.264921 | 7.3:+83386122 | MS.gene44645:CDS |
| GTTGTTTCAGGCTATGTTTA+TGG | 0.272519 | 7.3:+83386493 | MS.gene44645:intron |
| TTTGTTTCAGGTAATAGATT+TGG | 0.303954 | 7.3:+83385933 | MS.gene44645:intron |
| TAGGAATGATTGTGCGGTTT+GGG | 0.307093 | 7.3:+83386702 | MS.gene44645:intron |
| AATAGTCACCCCAAAAGGTT+TGG | 0.336042 | 7.3:+83386586 | MS.gene44645:CDS |
| TCATCTACACTGGTTCCTTT+TGG | 0.345121 | 7.3:+83386304 | MS.gene44645:CDS |
| GTGCGGTTTGGGTAATTAAC+TGG | 0.355704 | 7.3:+83386713 | MS.gene44645:CDS |
| GTTTCTGCCAACAACTTTAA+CGG | 0.369175 | 7.3:+83386011 | MS.gene44645:CDS |
| GTTTATGGAGGAGTTCTTGA+TGG | 0.373775 | 7.3:+83386508 | MS.gene44645:CDS |
| CGTGAAGCACCGACGAACTT+TGG | 0.382229 | 7.3:-83386370 | None:intergenic |
| TTGTCATATGAAACTCTTGA+TGG | 0.382802 | 7.3:-83385206 | None:intergenic |
| AAAACTCCCTCCAAATTAGA+TGG | 0.388717 | 7.3:+83385422 | MS.gene44645:CDS |
| GGTGTCTTGGTAACTACAAT+AGG | 0.406838 | 7.3:-83385365 | None:intergenic |
| AAATTTACCGTTAAAGTTGT+TGG | 0.410827 | 7.3:-83386018 | None:intergenic |
| TTAGGAATGATTGTGCGGTT+TGG | 0.432957 | 7.3:+83386701 | MS.gene44645:intron |
| GTAGTTACCAAGACACCGTT+GGG | 0.441988 | 7.3:+83385371 | MS.gene44645:CDS |
| GTTAATACCTTCGGAATAGA+TGG | 0.446080 | 7.3:-83385446 | None:intergenic |
| CAGTGTAGATGATCATATAT+TGG | 0.446763 | 7.3:-83386293 | None:intergenic |
| TTTAAAATAGTCACCCCAAA+AGG | 0.463204 | 7.3:+83386581 | MS.gene44645:CDS |
| CAAAGTTCGTCGGTGCTTCA+CGG | 0.486634 | 7.3:+83386371 | MS.gene44645:CDS |
| TGTGTACCCCAACGGTGTCT+TGG | 0.489552 | 7.3:-83385378 | None:intergenic |
| TTGATGGATCCATCTTTCCA+TGG | 0.492954 | 7.3:+83386524 | MS.gene44645:CDS |
| ATAGTCACCCCAAAAGGTTT+GGG | 0.495339 | 7.3:+83386587 | MS.gene44645:CDS |
| AAATGCGTCAACCTAAAACT+TGG | 0.506791 | 7.3:+83385989 | MS.gene44645:CDS |
| GACATCAGTAGAAGAAGTGA+AGG | 0.508863 | 7.3:+83385145 | MS.gene44645:CDS |
| GCTAACTTACGATGCAAGAA+AGG | 0.510769 | 7.3:+83385966 | MS.gene44645:CDS |
| AAATCTCTCTTGTCGTTGAA+AGG | 0.515792 | 7.3:-83386909 | None:intergenic |
| GGTTTGGGACGTCAAGGGGA+TGG | 0.517176 | 7.3:+83386602 | MS.gene44645:CDS |
| GAATCAGTGCCATGGAAAGA+TGG | 0.518164 | 7.3:-83386533 | None:intergenic |
| TCACAAAGTCAATAACCAAA+AGG | 0.520836 | 7.3:-83386319 | None:intergenic |
| CGACAAGAGAGATTTGATGT+TGG | 0.531297 | 7.3:+83386917 | MS.gene44645:CDS |
| ATGATGCAACGTGGAGAGAA+TGG | 0.542299 | 7.3:+83386736 | MS.gene44645:CDS |
| GTTTCAGGCTATGTTTATGG+AGG | 0.543768 | 7.3:+83386496 | MS.gene44645:intron |
| CCAAAAGGTTTGGGACGTCA+AGG | 0.551652 | 7.3:+83386596 | MS.gene44645:CDS |
| CAAAAGGTTTGGGACGTCAA+GGG | 0.561039 | 7.3:+83386597 | MS.gene44645:CDS |
| TGTAGTTACCAAGACACCGT+TGG | 0.561142 | 7.3:+83385370 | MS.gene44645:CDS |
| GTTCGTCGGTGCTTCACGGA+AGG | 0.563242 | 7.3:+83386375 | MS.gene44645:CDS |
| AAAAGGTTTGGGACGTCAAG+GGG | 0.574712 | 7.3:+83386598 | MS.gene44645:CDS |
| CATTAAAGGATATGATTCAG+AGG | 0.576591 | 7.3:+83386968 | MS.gene44645:CDS |
| AGATGGTCCATCTAATTTGG+AGG | 0.577756 | 7.3:-83385429 | None:intergenic |
| TTTAGCGATATGTGCTGTCG+TGG | 0.583539 | 7.3:+83386107 | MS.gene44645:intron |
| GATGGTCCATCTAATTTGGA+GGG | 0.594614 | 7.3:-83385428 | None:intergenic |
| CATAGTTTGAATCAGTGCCA+TGG | 0.596462 | 7.3:-83386541 | None:intergenic |
| ATTTATGGGAAATGCTGATG+TGG | 0.609698 | 7.3:+83386171 | MS.gene44645:CDS |
| AAATGCTGATGTGGTTTCAA+AGG | 0.609916 | 7.3:+83386180 | MS.gene44645:CDS |
| CGTGGAACTGTGTACCCCAA+CGG | 0.620776 | 7.3:-83385386 | None:intergenic |
| CAATATATGATCATCTACAC+TGG | 0.632704 | 7.3:+83386294 | MS.gene44645:CDS |
| AGATGGACCATCTATTCCGA+AGG | 0.659380 | 7.3:+83385439 | MS.gene44645:CDS |
| GGAGGTGTATCATGTGTACA+AGG | 0.664479 | 7.3:-83385185 | None:intergenic |
| TTATGCAAACAGGTGGACGA+AGG | 0.671354 | 7.3:+83386849 | MS.gene44645:intron |
| TCATATGAAACTCTTGATGG+AGG | 0.686579 | 7.3:-83385203 | None:intergenic |
| TGACTCGTACCAAAGTTCGT+CGG | 0.721179 | 7.3:+83386361 | MS.gene44645:CDS |
| ATTAACTGGATGATGCAACG+TGG | 0.737445 | 7.3:+83386727 | MS.gene44645:CDS |
| TAGTTACCAAGACACCGTTG+GGG | 0.747463 | 7.3:+83385372 | MS.gene44645:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATGATTAAATTTTGTTTT+AGG | + | chr7.3:83386683-83386702 | MS.gene44645:intron | 10.0% |
| !! | TCTAATTAAATAATACATAG+TGG | - | chr7.3:83386639-83386658 | None:intergenic | 15.0% |
| !! | TTCATATTGTTAATTGTTAT+AGG | + | chr7.3:83385726-83385745 | MS.gene44645:intron | 15.0% |
| !!! | AAATTTGTTAATGATTTTCT+AGG | - | chr7.3:83386468-83386487 | None:intergenic | 15.0% |
| !! | AAATTGTTCTCAACAAAAAA+AGG | + | chr7.3:83385329-83385348 | MS.gene44645:CDS | 20.0% |
| !! | ACTTATTAAGCTTATTTGTA+TGG | + | chr7.3:83385887-83385906 | MS.gene44645:intron | 20.0% |
| !! | CTTATTAAGCTTATTTGTAT+GGG | + | chr7.3:83385888-83385907 | MS.gene44645:intron | 20.0% |
| !! | GATATCAAGTATCAAAAAAT+TGG | + | chr7.3:83386397-83386416 | MS.gene44645:CDS | 20.0% |
| !! | TATTGTTAATTGTTATAGGA+AGG | + | chr7.3:83385730-83385749 | MS.gene44645:intron | 20.0% |
| !! | TTATTAAGCTTATTTGTATG+GGG | + | chr7.3:83385889-83385908 | MS.gene44645:intron | 20.0% |
| !! | TTCTACCAAAAAGAATTTAT+GGG | + | chr7.3:83386157-83386176 | MS.gene44645:CDS | 20.0% |
| !! | TTGTTAATATCTTTATACAG+TGG | + | chr7.3:83385534-83385553 | MS.gene44645:intron | 20.0% |
| !!! | TGCAATTTCATTACATTTTA+TGG | + | chr7.3:83386799-83386818 | MS.gene44645:intron | 20.0% |
| !!! | TTTTTGTTGAGAACAATTTT+CGG | - | chr7.3:83385328-83385347 | None:intergenic | 20.0% |
| ! | AAATTTACCGTTAAAGTTGT+TGG | - | chr7.3:83386021-83386040 | None:intergenic | 25.0% |
| ! | AATTTGGCCATTTACATATT+TGG | + | chr7.3:83385611-83385630 | MS.gene44645:intron | 25.0% |
| ! | AGTTTCATATGACAAAAAAG+TGG | + | chr7.3:83385214-83385233 | MS.gene44645:CDS | 25.0% |
| ! | CATAAGCAAGATTTCATTAA+AGG | + | chr7.3:83386954-83386973 | MS.gene44645:CDS | 25.0% |
| ! | GTTCTACCAAAAAGAATTTA+TGG | + | chr7.3:83386156-83386175 | MS.gene44645:CDS | 25.0% |
| ! | TTTAATTCCATTCTTCTCTT+TGG | - | chr7.3:83385578-83385597 | None:intergenic | 25.0% |
| !! | CATTTCCCATAAATTCTTTT+TGG | - | chr7.3:83386165-83386184 | None:intergenic | 25.0% |
| !! | TTTGTTTCAGGTAATAGATT+TGG | + | chr7.3:83385933-83385952 | MS.gene44645:intron | 25.0% |
| !!! | GTTTTTTTTTCTTTTCTACG+TGG | - | chr7.3:83385407-83385426 | None:intergenic | 25.0% |
| AACTGTTTCATTTGCCAAAA+TGG | - | chr7.3:83386139-83386158 | None:intergenic | 30.0% | |
| AACTTGCCAATTTCTTCATT+AGG | - | chr7.3:83385644-83385663 | None:intergenic | 30.0% | |
| AATAGATGGTCCATCTAATT+TGG | - | chr7.3:83385435-83385454 | None:intergenic | 30.0% | |
| CAATATATGATCATCTACAC+TGG | + | chr7.3:83386294-83386313 | MS.gene44645:CDS | 30.0% | |
| CAGTGTAGATGATCATATAT+TGG | - | chr7.3:83386296-83386315 | None:intergenic | 30.0% | |
| CATTAAAGGATATGATTCAG+AGG | + | chr7.3:83386968-83386987 | MS.gene44645:CDS | 30.0% | |
| TAGTGGTATGTTAATACCTT+CGG | - | chr7.3:83385458-83385477 | None:intergenic | 30.0% | |
| TCACAAAGTCAATAACCAAA+AGG | - | chr7.3:83386322-83386341 | None:intergenic | 30.0% | |
| TGGACATCCAAATATGTAAA+TGG | - | chr7.3:83385621-83385640 | None:intergenic | 30.0% | |
| TTCATATGACAAAAAAGTGG+AGG | + | chr7.3:83385217-83385236 | MS.gene44645:CDS | 30.0% | |
| TTGTCATATGAAACTCTTGA+TGG | - | chr7.3:83385209-83385228 | None:intergenic | 30.0% | |
| TTGTTCTCAACAAAAAAAGG+AGG | + | chr7.3:83385332-83385351 | MS.gene44645:CDS | 30.0% | |
| TTTAGCCAAATTATGCAAAC+AGG | + | chr7.3:83386839-83386858 | MS.gene44645:intron | 30.0% | |
| TTTGATGTTGGAAAAGTCTT+TGG | + | chr7.3:83386929-83386948 | MS.gene44645:CDS | 30.0% | |
| ! | AAACGAAGAAGAGTGTAATT+TGG | + | chr7.3:83385595-83385614 | MS.gene44645:intron | 30.0% |
| ! | TAAGAGATCAACTTTGTTTC+AGG | + | chr7.3:83385921-83385940 | MS.gene44645:intron | 30.0% |
| ! | TTTAAAATAGTCACCCCAAA+AGG | + | chr7.3:83386581-83386600 | MS.gene44645:CDS | 30.0% |
| !! | CAAATTTCAAGTGTTGTTTC+AGG | + | chr7.3:83386481-83386500 | MS.gene44645:intron | 30.0% |
| !!! | TTGTTTTAGGAATGATTGTG+CGG | + | chr7.3:83386696-83386715 | MS.gene44645:intron | 30.0% |
| AAAACTCCCTCCAAATTAGA+TGG | + | chr7.3:83385422-83385441 | MS.gene44645:CDS | 35.0% | |
| AAACCCAACAAATTCGTTAC+GGG | + | chr7.3:83385815-83385834 | MS.gene44645:intron | 35.0% | |
| AAATCTCTCTTGTCGTTGAA+AGG | - | chr7.3:83386912-83386931 | None:intergenic | 35.0% | |
| AAATGCGTCAACCTAAAACT+TGG | + | chr7.3:83385989-83386008 | MS.gene44645:CDS | 35.0% | |
| AAATGCTGATGTGGTTTCAA+AGG | + | chr7.3:83386180-83386199 | MS.gene44645:CDS | 35.0% | |
| AGCACATATCGCTAAATAGA+TGG | - | chr7.3:83386103-83386122 | None:intergenic | 35.0% | |
| ATTTATGGGAAATGCTGATG+TGG | + | chr7.3:83386171-83386190 | MS.gene44645:CDS | 35.0% | |
| CATACCACTATTGATGTCTT+CGG | + | chr7.3:83385468-83385487 | MS.gene44645:intron | 35.0% | |
| CATCGCTGCTTCTAATTATT+GGG | + | chr7.3:83385757-83385776 | MS.gene44645:intron | 35.0% | |
| GAAACCCAACAAATTCGTTA+CGG | + | chr7.3:83385814-83385833 | MS.gene44645:intron | 35.0% | |
| GTTAATACCTTCGGAATAGA+TGG | - | chr7.3:83385449-83385468 | None:intergenic | 35.0% | |
| GTTTCAACCAAAGAGAAGAA+TGG | + | chr7.3:83385568-83385587 | MS.gene44645:intron | 35.0% | |
| GTTTCTGCCAACAACTTTAA+CGG | + | chr7.3:83386011-83386030 | MS.gene44645:CDS | 35.0% | |
| TAAACATGTATGAGCGCATA+GGG | - | chr7.3:83386076-83386095 | None:intergenic | 35.0% | |
| TCATATGAAACTCTTGATGG+AGG | - | chr7.3:83385206-83385225 | None:intergenic | 35.0% | |
| TCATCGCTGCTTCTAATTAT+TGG | + | chr7.3:83385756-83385775 | MS.gene44645:intron | 35.0% | |
| TGTCCACCTAATGAAGAAAT+TGG | + | chr7.3:83385635-83385654 | MS.gene44645:intron | 35.0% | |
| TTAAACATGTATGAGCGCAT+AGG | - | chr7.3:83386077-83386096 | None:intergenic | 35.0% | |
| TTGCCAATTTCTTCATTAGG+TGG | - | chr7.3:83385641-83385660 | None:intergenic | 35.0% | |
| ! | AAAAAGTGATGACGATTGCA+AGG | + | chr7.3:83385280-83385299 | MS.gene44645:CDS | 35.0% |
| ! | AATTTTCGGACACTTTGCTT+TGG | - | chr7.3:83385314-83385333 | None:intergenic | 35.0% |
| ! | GTTGTTTCAGGCTATGTTTA+TGG | + | chr7.3:83386493-83386512 | MS.gene44645:intron | 35.0% |
| AAACATGTATGAGCGCATAG+GGG | - | chr7.3:83386075-83386094 | None:intergenic | 40.0% | |
| AATAGTCACCCCAAAAGGTT+TGG | + | chr7.3:83386586-83386605 | MS.gene44645:CDS | 40.0% | |
| ACTACCGAAGACATCAATAG+TGG | - | chr7.3:83385475-83385494 | None:intergenic | 40.0% | |
| AGATGGTCCATCTAATTTGG+AGG | - | chr7.3:83385432-83385451 | None:intergenic | 40.0% | |
| AGCCAAATTATGCAAACAGG+TGG | + | chr7.3:83386842-83386861 | MS.gene44645:intron | 40.0% | |
| ATAGTCACCCCAAAAGGTTT+GGG | + | chr7.3:83386587-83386606 | MS.gene44645:CDS | 40.0% | |
| ATCTCCCGTAACGAATTTGT+TGG | - | chr7.3:83385822-83385841 | None:intergenic | 40.0% | |
| ATTAACTGGATGATGCAACG+TGG | + | chr7.3:83386727-83386746 | MS.gene44645:CDS | 40.0% | |
| CATAGTTTGAATCAGTGCCA+TGG | - | chr7.3:83386544-83386563 | None:intergenic | 40.0% | |
| CGACAAGAGAGATTTGATGT+TGG | + | chr7.3:83386917-83386936 | MS.gene44645:CDS | 40.0% | |
| GACATCAGTAGAAGAAGTGA+AGG | + | chr7.3:83385145-83385164 | MS.gene44645:CDS | 40.0% | |
| GATGGTCCATCTAATTTGGA+GGG | - | chr7.3:83385431-83385450 | None:intergenic | 40.0% | |
| GCTAACTTACGATGCAAGAA+AGG | + | chr7.3:83385966-83385985 | MS.gene44645:CDS | 40.0% | |
| GTCCACCTGTTTGCATAATT+TGG | - | chr7.3:83386847-83386866 | None:intergenic | 40.0% | |
| GTTTATGGAGGAGTTCTTGA+TGG | + | chr7.3:83386508-83386527 | MS.gene44645:CDS | 40.0% | |
| GTTTCAGGCTATGTTTATGG+AGG | + | chr7.3:83386496-83386515 | MS.gene44645:intron | 40.0% | |
| TAGGAATGATTGTGCGGTTT+GGG | + | chr7.3:83386702-83386721 | MS.gene44645:intron | 40.0% | |
| TTAGGAATGATTGTGCGGTT+TGG | + | chr7.3:83386701-83386720 | MS.gene44645:intron | 40.0% | |
| ! | GGTGTCTTGGTAACTACAAT+AGG | - | chr7.3:83385368-83385387 | None:intergenic | 40.0% |
| ! | GTTGGCAGAAACCAAGTTTT+AGG | - | chr7.3:83386003-83386022 | None:intergenic | 40.0% |
| ! | TCTCCCGTAACGAATTTGTT+GGG | - | chr7.3:83385821-83385840 | None:intergenic | 40.0% |
| ! | TGTCGTGGAATTCACCATTT+TGG | + | chr7.3:83386122-83386141 | MS.gene44645:CDS | 40.0% |
| ! | TTGATGGATCCATCTTTCCA+TGG | + | chr7.3:83386524-83386543 | MS.gene44645:CDS | 40.0% |
| !!! | TCATCTACACTGGTTCCTTT+TGG | + | chr7.3:83386304-83386323 | MS.gene44645:CDS | 40.0% |
| AGATGGACCATCTATTCCGA+AGG | + | chr7.3:83385439-83385458 | MS.gene44645:CDS | 45.0% | |
| ATGATGCAACGTGGAGAGAA+TGG | + | chr7.3:83386736-83386755 | MS.gene44645:CDS | 45.0% | |
| ATTGGGCGCATCATGTAACA+AGG | + | chr7.3:83385774-83385793 | MS.gene44645:intron | 45.0% | |
| GAATCAGTGCCATGGAAAGA+TGG | - | chr7.3:83386536-83386555 | None:intergenic | 45.0% | |
| GTAGTTACCAAGACACCGTT+GGG | + | chr7.3:83385371-83385390 | MS.gene44645:CDS | 45.0% | |
| TAGTTACCAAGACACCGTTG+GGG | + | chr7.3:83385372-83385391 | MS.gene44645:CDS | 45.0% | |
| TGACTCGTACCAAAGTTCGT+CGG | + | chr7.3:83386361-83386380 | MS.gene44645:CDS | 45.0% | |
| TGTAGTTACCAAGACACCGT+TGG | + | chr7.3:83385370-83385389 | MS.gene44645:CDS | 45.0% | |
| TTATGCAAACAGGTGGACGA+AGG | + | chr7.3:83386849-83386868 | MS.gene44645:intron | 45.0% | |
| TTTAGCGATATGTGCTGTCG+TGG | + | chr7.3:83386107-83386126 | MS.gene44645:intron | 45.0% | |
| ! | AAAAGGTTTGGGACGTCAAG+GGG | + | chr7.3:83386598-83386617 | MS.gene44645:CDS | 45.0% |
| ! | CAAAAGGTTTGGGACGTCAA+GGG | + | chr7.3:83386597-83386616 | MS.gene44645:CDS | 45.0% |
| ! | CTTGACGTCCCAAACCTTTT+GGG | - | chr7.3:83386598-83386617 | None:intergenic | 45.0% |
| ! | GGAGGTGTATCATGTGTACA+AGG | - | chr7.3:83385188-83385207 | None:intergenic | 45.0% |
| ! | GTGCGGTTTGGGTAATTAAC+TGG | + | chr7.3:83386713-83386732 | MS.gene44645:CDS | 45.0% |
| ! | TTGACGTCCCAAACCTTTTG+GGG | - | chr7.3:83386597-83386616 | None:intergenic | 45.0% |
| ! | CAAAGTTCGTCGGTGCTTCA+CGG | + | chr7.3:83386371-83386390 | MS.gene44645:CDS | 50.0% |
| ! | CCAAAAGGTTTGGGACGTCA+AGG | + | chr7.3:83386596-83386615 | MS.gene44645:CDS | 50.0% |
| ! | CCTTGACGTCCCAAACCTTT+TGG | - | chr7.3:83386599-83386618 | None:intergenic | 50.0% |
| CGTGGAACTGTGTACCCCAA+CGG | - | chr7.3:83385389-83385408 | None:intergenic | 55.0% | |
| TGTGTACCCCAACGGTGTCT+TGG | - | chr7.3:83385381-83385400 | None:intergenic | 55.0% | |
| !! | CGTGAAGCACCGACGAACTT+TGG | - | chr7.3:83386373-83386392 | None:intergenic | 55.0% |
| ! | GGTTTGGGACGTCAAGGGGA+TGG | + | chr7.3:83386602-83386621 | MS.gene44645:CDS | 60.0% |
| ! | GTTCGTCGGTGCTTCACGGA+AGG | + | chr7.3:83386375-83386394 | MS.gene44645:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 83385143 | 83386998 | 83385143 | ID=MS.gene44645 |
| chr7.3 | mRNA | 83385143 | 83386998 | 83385143 | ID=MS.gene44645.t1;Parent=MS.gene44645 |
| chr7.3 | exon | 83385143 | 83385460 | 83385143 | ID=MS.gene44645.t1.exon1;Parent=MS.gene44645.t1 |
| chr7.3 | CDS | 83385143 | 83385460 | 83385143 | ID=cds.MS.gene44645.t1;Parent=MS.gene44645.t1 |
| chr7.3 | exon | 83385943 | 83386032 | 83385943 | ID=MS.gene44645.t1.exon2;Parent=MS.gene44645.t1 |
| chr7.3 | CDS | 83385943 | 83386032 | 83385943 | ID=cds.MS.gene44645.t1;Parent=MS.gene44645.t1 |
| chr7.3 | exon | 83386112 | 83386201 | 83386112 | ID=MS.gene44645.t1.exon3;Parent=MS.gene44645.t1 |
| chr7.3 | CDS | 83386112 | 83386201 | 83386112 | ID=cds.MS.gene44645.t1;Parent=MS.gene44645.t1 |
| chr7.3 | exon | 83386284 | 83386418 | 83386284 | ID=MS.gene44645.t1.exon4;Parent=MS.gene44645.t1 |
| chr7.3 | CDS | 83386284 | 83386418 | 83386284 | ID=cds.MS.gene44645.t1;Parent=MS.gene44645.t1 |
| chr7.3 | exon | 83386503 | 83386627 | 83386503 | ID=MS.gene44645.t1.exon5;Parent=MS.gene44645.t1 |
| chr7.3 | CDS | 83386503 | 83386627 | 83386503 | ID=cds.MS.gene44645.t1;Parent=MS.gene44645.t1 |
| chr7.3 | exon | 83386705 | 83386771 | 83386705 | ID=MS.gene44645.t1.exon6;Parent=MS.gene44645.t1 |
| chr7.3 | CDS | 83386705 | 83386771 | 83386705 | ID=cds.MS.gene44645.t1;Parent=MS.gene44645.t1 |
| chr7.3 | exon | 83386861 | 83386998 | 83386861 | ID=MS.gene44645.t1.exon7;Parent=MS.gene44645.t1 |
| chr7.3 | CDS | 83386861 | 83386998 | 83386861 | ID=cds.MS.gene44645.t1;Parent=MS.gene44645.t1 |
| Gene Sequence |
| Protein sequence |
