Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053460.t1 | GAU33476.1 | 62.6 | 254 | 82 | 3 | 1 | 253 | 98 | 339 | 9.40E-81 | 310.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053460.t1 | A0A2Z6MLR9 | 62.6 | 254 | 82 | 3 | 1 | 253 | 98 | 339 | 6.7e-81 | 310.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053460 | MS.gene44645 | 0.879836 | 9.00E-70 | -1.69E-46 |
| MS.gene053460 | MS.gene45680 | 0.853932 | 1.72E-61 | -1.69E-46 |
| MS.gene053460 | MS.gene48868 | 0.906154 | 2.01E-80 | -1.69E-46 |
| MS.gene053460 | MS.gene48869 | 0.89383 | 4.36E-75 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053460.t1 | MTR_4g007830 | 44.981 | 269 | 117 | 2 | 65 | 302 | 80 | 348 | 1.67e-71 | 226 |
| MS.gene053460.t1 | MTR_1g009820 | 89.524 | 105 | 11 | 0 | 215 | 319 | 1 | 105 | 1.54e-64 | 199 |
| MS.gene053460.t1 | MTR_8g089760 | 49.697 | 165 | 81 | 1 | 140 | 302 | 1 | 165 | 4.08e-49 | 162 |
| MS.gene053460.t1 | MTR_4g040020 | 34.555 | 191 | 114 | 7 | 128 | 313 | 10 | 194 | 2.29e-29 | 112 |
| MS.gene053460.t1 | MTR_5g022270 | 35.542 | 166 | 101 | 4 | 127 | 288 | 223 | 386 | 6.12e-27 | 110 |
| MS.gene053460.t1 | MTR_2g022080 | 34.337 | 166 | 103 | 4 | 127 | 288 | 223 | 386 | 9.79e-26 | 106 |
| MS.gene053460.t1 | MTR_6g035170 | 41.176 | 68 | 39 | 1 | 128 | 194 | 183 | 250 | 3.51e-12 | 66.6 |
| MS.gene053460.t1 | MTR_8g031230 | 29.530 | 149 | 95 | 5 | 177 | 317 | 111 | 257 | 4.14e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 57 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGACGTCCCAAACCTTT+TGG | 0.174160 | 1.4:-29438860 | None:intergenic |
| AACTGTTTCATTTGCCAAAA+TGG | 0.193914 | 1.4:-29438400 | None:intergenic |
| CATAAGCAAGATTTCATTAA+AGG | 0.220107 | 1.4:+29439218 | MS.gene053460:CDS |
| AATAGATGGTCCATCTAATT+TGG | 0.253635 | 1.4:-29437696 | None:intergenic |
| TTTGATGTTGGCAAAGTCTT+TGG | 0.263575 | 1.4:+29439193 | MS.gene053460:CDS |
| TGTCGTGGAATTCACCATTT+TGG | 0.264921 | 1.4:+29438386 | MS.gene053460:CDS |
| GTTGTTTCAGGCTATGTTTA+TGG | 0.272519 | 1.4:+29438757 | MS.gene053460:intron |
| TAGGAATGATTGTGCGGTTT+GGG | 0.307093 | 1.4:+29438966 | MS.gene053460:intron |
| AATAGTCACCCCAAAAGGTT+TGG | 0.336042 | 1.4:+29438850 | MS.gene053460:CDS |
| TCATCTACACTGGTTCCTTT+TGG | 0.345121 | 1.4:+29438568 | MS.gene053460:CDS |
| GTGCGGTTTGGGTAATTAAC+TGG | 0.355704 | 1.4:+29438977 | MS.gene053460:CDS |
| GTTTCTGCCAACAACTTTAA+CGG | 0.369175 | 1.4:+29438275 | MS.gene053460:CDS |
| GTTTATGGAGGAGTTCTTGA+TGG | 0.373775 | 1.4:+29438772 | MS.gene053460:CDS |
| CGTGAAGCACCGACGAACTT+TGG | 0.382229 | 1.4:-29438634 | None:intergenic |
| TTGTCATATGAAACTCTTGA+TGG | 0.382802 | 1.4:-29437470 | None:intergenic |
| AAAACTCCCTCCAAATTAGA+TGG | 0.388717 | 1.4:+29437686 | MS.gene053460:CDS |
| GGTGTCTTGGTAACTACAAT+AGG | 0.406838 | 1.4:-29437629 | None:intergenic |
| AAATTTACCGTTAAAGTTGT+TGG | 0.410827 | 1.4:-29438282 | None:intergenic |
| TTAGGAATGATTGTGCGGTT+TGG | 0.432957 | 1.4:+29438965 | MS.gene053460:intron |
| GTAGTTACCAAGACACCGTT+GGG | 0.441988 | 1.4:+29437635 | MS.gene053460:CDS |
| GTTAATACCTTCGGAATAGA+TGG | 0.446080 | 1.4:-29437710 | None:intergenic |
| CAGTGTAGATGATCATATAT+TGG | 0.446763 | 1.4:-29438557 | None:intergenic |
| TTTAAAATAGTCACCCCAAA+AGG | 0.463204 | 1.4:+29438845 | MS.gene053460:CDS |
| CAAAGTTCGTCGGTGCTTCA+CGG | 0.486634 | 1.4:+29438635 | MS.gene053460:CDS |
| TGTGTACCCCAACGGTGTCT+TGG | 0.489552 | 1.4:-29437642 | None:intergenic |
| TTGATGGATCCATCTTTCCA+TGG | 0.492954 | 1.4:+29438788 | MS.gene053460:CDS |
| ATAGTCACCCCAAAAGGTTT+GGG | 0.495339 | 1.4:+29438851 | MS.gene053460:CDS |
| GAATCAATGCCATGGAAAGA+TGG | 0.506160 | 1.4:-29438797 | None:intergenic |
| AAATGCGTCAACCTAAAACT+TGG | 0.506791 | 1.4:+29438253 | MS.gene053460:CDS |
| GACATCAGTAGAAGAAGTGA+AGG | 0.508863 | 1.4:+29437409 | MS.gene053460:CDS |
| GCTAACTTACGATGCAAGAA+AGG | 0.510769 | 1.4:+29438230 | MS.gene053460:CDS |
| AAATCTCTCTTGTCGTTGAA+AGG | 0.515792 | 1.4:-29439173 | None:intergenic |
| GGTTTGGGACGTCAAGGGGA+TGG | 0.517176 | 1.4:+29438866 | MS.gene053460:CDS |
| TCACAAAGTCAATAACCAAA+AGG | 0.520836 | 1.4:-29438583 | None:intergenic |
| GTTTCAGGCTATGTTTATGG+AGG | 0.543768 | 1.4:+29438760 | MS.gene053460:intron |
| CCAAAAGGTTTGGGACGTCA+AGG | 0.551652 | 1.4:+29438860 | MS.gene053460:CDS |
| CAAAAGGTTTGGGACGTCAA+GGG | 0.561039 | 1.4:+29438861 | MS.gene053460:CDS |
| TGTAGTTACCAAGACACCGT+TGG | 0.561142 | 1.4:+29437634 | MS.gene053460:CDS |
| GTTCGTCGGTGCTTCACGGA+AGG | 0.563242 | 1.4:+29438639 | MS.gene053460:CDS |
| AAAAGGTTTGGGACGTCAAG+GGG | 0.574712 | 1.4:+29438862 | MS.gene053460:CDS |
| CATTAAAGGATATGATTCAG+AGG | 0.576591 | 1.4:+29439232 | MS.gene053460:CDS |
| AGATGGTCCATCTAATTTGG+AGG | 0.577756 | 1.4:-29437693 | None:intergenic |
| CATAGTTTGAATCAATGCCA+TGG | 0.578649 | 1.4:-29438805 | None:intergenic |
| TTTAGCGATATGTGCTGTCG+TGG | 0.583539 | 1.4:+29438371 | MS.gene053460:intron |
| CGACAAGAGAGATTTGATGT+TGG | 0.587936 | 1.4:+29439181 | MS.gene053460:CDS |
| ATGATGCAACGTGTAGAGAA+TGG | 0.591979 | 1.4:+29439000 | MS.gene053460:CDS |
| GATGGTCCATCTAATTTGGA+GGG | 0.594614 | 1.4:-29437692 | None:intergenic |
| ATTTATGGGAAATGCTGATG+TGG | 0.609698 | 1.4:+29438435 | MS.gene053460:CDS |
| AAATGCTGATGTGGTTTCAA+AGG | 0.609916 | 1.4:+29438444 | MS.gene053460:CDS |
| CGTGGAACTGTGTACCCCAA+CGG | 0.620776 | 1.4:-29437650 | None:intergenic |
| CAATATATGATCATCTACAC+TGG | 0.632704 | 1.4:+29438558 | MS.gene053460:CDS |
| AGATGGACCATCTATTCCGA+AGG | 0.659380 | 1.4:+29437703 | MS.gene053460:CDS |
| GGAGGTGTATCATGTGTACA+AGG | 0.664479 | 1.4:-29437449 | None:intergenic |
| TTATGCAAACAGGTGGACGA+AGG | 0.671354 | 1.4:+29439113 | MS.gene053460:intron |
| TCATATGAAACTCTTGATGG+AGG | 0.686579 | 1.4:-29437467 | None:intergenic |
| TGACTCGTACCAAAGTTCGT+CGG | 0.721179 | 1.4:+29438625 | MS.gene053460:CDS |
| TAGTTACCAAGACACCGTTG+GGG | 0.747463 | 1.4:+29437636 | MS.gene053460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATGATTAAATTTTGTTTT+AGG | + | chr1.4:29438947-29438966 | MS.gene053460:intron | 10.0% |
| !! | TCTAATTAAATAATACATAG+TGG | - | chr1.4:29438903-29438922 | None:intergenic | 15.0% |
| !! | TTCATATTGTTAATTGTTAT+AGG | + | chr1.4:29437990-29438009 | MS.gene053460:intron | 15.0% |
| !!! | AAATTTGTTAATGATTTTCT+AGG | - | chr1.4:29438732-29438751 | None:intergenic | 15.0% |
| !! | AAATTGTTCTCAACAAAAAA+AGG | + | chr1.4:29437593-29437612 | MS.gene053460:CDS | 20.0% |
| !! | ACTTATTAAGCTTATTTGTA+TGG | + | chr1.4:29438151-29438170 | MS.gene053460:intron | 20.0% |
| !! | CTTATTAAGCTTATTTGTAT+GGG | + | chr1.4:29438152-29438171 | MS.gene053460:intron | 20.0% |
| !! | GATATCAAGTATCAAAAAAT+TGG | + | chr1.4:29438661-29438680 | MS.gene053460:CDS | 20.0% |
| !! | TATTGTTAATTGTTATAGGA+AGG | + | chr1.4:29437994-29438013 | MS.gene053460:intron | 20.0% |
| !! | TTATTAAGCTTATTTGTATG+GGG | + | chr1.4:29438153-29438172 | MS.gene053460:intron | 20.0% |
| !! | TTCTACCAAAAAGAATTTAT+GGG | + | chr1.4:29438421-29438440 | MS.gene053460:CDS | 20.0% |
| !! | TTGTTAATATCTTTATACAG+TGG | + | chr1.4:29437798-29437817 | MS.gene053460:intron | 20.0% |
| !!! | TGCAATTTCATTACATTTTA+TGG | + | chr1.4:29439063-29439082 | MS.gene053460:intron | 20.0% |
| !!! | TTTGTTTTAGGTAATAGATT+TGG | + | chr1.4:29438197-29438216 | MS.gene053460:intron | 20.0% |
| !!! | TTTTTGTTGAGAACAATTTT+CGG | - | chr1.4:29437592-29437611 | None:intergenic | 20.0% |
| ! | AAATTTACCGTTAAAGTTGT+TGG | - | chr1.4:29438285-29438304 | None:intergenic | 25.0% |
| ! | AATTTGGCCATTTACATATT+TGG | + | chr1.4:29437875-29437894 | MS.gene053460:intron | 25.0% |
| ! | AGTTTCATATGACAAAAAAG+TGG | + | chr1.4:29437478-29437497 | MS.gene053460:CDS | 25.0% |
| ! | CATAAGCAAGATTTCATTAA+AGG | + | chr1.4:29439218-29439237 | MS.gene053460:CDS | 25.0% |
| ! | GTTCTACCAAAAAGAATTTA+TGG | + | chr1.4:29438420-29438439 | MS.gene053460:CDS | 25.0% |
| ! | TTTAATTCCATTCTTCTCTT+TGG | - | chr1.4:29437842-29437861 | None:intergenic | 25.0% |
| !! | CATTTCCCATAAATTCTTTT+TGG | - | chr1.4:29438429-29438448 | None:intergenic | 25.0% |
| !!! | GTTTTTTTTTCTTTTCTACG+TGG | - | chr1.4:29437671-29437690 | None:intergenic | 25.0% |
| !!! | TAAGAGATCAACTTTGTTTT+AGG | + | chr1.4:29438185-29438204 | MS.gene053460:intron | 25.0% |
| AACTGTTTCATTTGCCAAAA+TGG | - | chr1.4:29438403-29438422 | None:intergenic | 30.0% | |
| AACTTGCCAATTTCTTCATT+AGG | - | chr1.4:29437908-29437927 | None:intergenic | 30.0% | |
| AATAGATGGTCCATCTAATT+TGG | - | chr1.4:29437699-29437718 | None:intergenic | 30.0% | |
| CAATATATGATCATCTACAC+TGG | + | chr1.4:29438558-29438577 | MS.gene053460:CDS | 30.0% | |
| CAGTGTAGATGATCATATAT+TGG | - | chr1.4:29438560-29438579 | None:intergenic | 30.0% | |
| CATTAAAGGATATGATTCAG+AGG | + | chr1.4:29439232-29439251 | MS.gene053460:CDS | 30.0% | |
| TAGTGGTATGTTAATACCTT+CGG | - | chr1.4:29437722-29437741 | None:intergenic | 30.0% | |
| TCACAAAGTCAATAACCAAA+AGG | - | chr1.4:29438586-29438605 | None:intergenic | 30.0% | |
| TGGACATCCAAATATGTAAA+TGG | - | chr1.4:29437885-29437904 | None:intergenic | 30.0% | |
| TTCATATGACAAAAAAGTGG+AGG | + | chr1.4:29437481-29437500 | MS.gene053460:CDS | 30.0% | |
| TTGTCATATGAAACTCTTGA+TGG | - | chr1.4:29437473-29437492 | None:intergenic | 30.0% | |
| TTGTTCTCAACAAAAAAAGG+AGG | + | chr1.4:29437596-29437615 | MS.gene053460:CDS | 30.0% | |
| TTTAGCCAAATTATGCAAAC+AGG | + | chr1.4:29439103-29439122 | MS.gene053460:intron | 30.0% | |
| ! | AAACGAAGAAGAGTGTAATT+TGG | + | chr1.4:29437859-29437878 | MS.gene053460:intron | 30.0% |
| ! | TTTAAAATAGTCACCCCAAA+AGG | + | chr1.4:29438845-29438864 | MS.gene053460:CDS | 30.0% |
| !! | CAAATTTCAAGTGTTGTTTC+AGG | + | chr1.4:29438745-29438764 | MS.gene053460:intron | 30.0% |
| !!! | TTGTTTTAGGAATGATTGTG+CGG | + | chr1.4:29438960-29438979 | MS.gene053460:intron | 30.0% |
| AAAACTCCCTCCAAATTAGA+TGG | + | chr1.4:29437686-29437705 | MS.gene053460:CDS | 35.0% | |
| AAACCCAACAAATTCGTTAC+GGG | + | chr1.4:29438079-29438098 | MS.gene053460:intron | 35.0% | |
| AAATCTCTCTTGTCGTTGAA+AGG | - | chr1.4:29439176-29439195 | None:intergenic | 35.0% | |
| AAATGCGTCAACCTAAAACT+TGG | + | chr1.4:29438253-29438272 | MS.gene053460:CDS | 35.0% | |
| AAATGCTGATGTGGTTTCAA+AGG | + | chr1.4:29438444-29438463 | MS.gene053460:CDS | 35.0% | |
| AGCACATATCGCTAAATAGA+TGG | - | chr1.4:29438367-29438386 | None:intergenic | 35.0% | |
| ATTTATGGGAAATGCTGATG+TGG | + | chr1.4:29438435-29438454 | MS.gene053460:CDS | 35.0% | |
| CATACCACTATTGATGTCTT+CGG | + | chr1.4:29437732-29437751 | MS.gene053460:intron | 35.0% | |
| CATAGTTTGAATCAATGCCA+TGG | - | chr1.4:29438808-29438827 | None:intergenic | 35.0% | |
| CATCGCTGCTTCTAATTATT+GGG | + | chr1.4:29438021-29438040 | MS.gene053460:intron | 35.0% | |
| GAAACCCAACAAATTCGTTA+CGG | + | chr1.4:29438078-29438097 | MS.gene053460:intron | 35.0% | |
| GTTAATACCTTCGGAATAGA+TGG | - | chr1.4:29437713-29437732 | None:intergenic | 35.0% | |
| GTTTCAACCAAAGAGAAGAA+TGG | + | chr1.4:29437832-29437851 | MS.gene053460:intron | 35.0% | |
| GTTTCTGCCAACAACTTTAA+CGG | + | chr1.4:29438275-29438294 | MS.gene053460:CDS | 35.0% | |
| TAAACATGTATGAGCGCATA+GGG | - | chr1.4:29438340-29438359 | None:intergenic | 35.0% | |
| TCATATGAAACTCTTGATGG+AGG | - | chr1.4:29437470-29437489 | None:intergenic | 35.0% | |
| TCATCGCTGCTTCTAATTAT+TGG | + | chr1.4:29438020-29438039 | MS.gene053460:intron | 35.0% | |
| TGTCCACCTAATGAAGAAAT+TGG | + | chr1.4:29437899-29437918 | MS.gene053460:intron | 35.0% | |
| TTAAACATGTATGAGCGCAT+AGG | - | chr1.4:29438341-29438360 | None:intergenic | 35.0% | |
| TTGCCAATTTCTTCATTAGG+TGG | - | chr1.4:29437905-29437924 | None:intergenic | 35.0% | |
| TTTGATGTTGGCAAAGTCTT+TGG | + | chr1.4:29439193-29439212 | MS.gene053460:CDS | 35.0% | |
| ! | AAAAAGTGATGACGATTGCA+AGG | + | chr1.4:29437544-29437563 | MS.gene053460:CDS | 35.0% |
| ! | AATTTTCGGACACTTTGCTT+TGG | - | chr1.4:29437578-29437597 | None:intergenic | 35.0% |
| ! | GTTGTTTCAGGCTATGTTTA+TGG | + | chr1.4:29438757-29438776 | MS.gene053460:intron | 35.0% |
| AAACATGTATGAGCGCATAG+GGG | - | chr1.4:29438339-29438358 | None:intergenic | 40.0% | |
| AATAGTCACCCCAAAAGGTT+TGG | + | chr1.4:29438850-29438869 | MS.gene053460:CDS | 40.0% | |
| ACTACCGAAGACATCAATAG+TGG | - | chr1.4:29437739-29437758 | None:intergenic | 40.0% | |
| AGATGGTCCATCTAATTTGG+AGG | - | chr1.4:29437696-29437715 | None:intergenic | 40.0% | |
| AGCCAAATTATGCAAACAGG+TGG | + | chr1.4:29439106-29439125 | MS.gene053460:intron | 40.0% | |
| ATAGTCACCCCAAAAGGTTT+GGG | + | chr1.4:29438851-29438870 | MS.gene053460:CDS | 40.0% | |
| ATCTCCCGTAACGAATTTGT+TGG | - | chr1.4:29438086-29438105 | None:intergenic | 40.0% | |
| ATGATGCAACGTGTAGAGAA+TGG | + | chr1.4:29439000-29439019 | MS.gene053460:CDS | 40.0% | |
| CGACAAGAGAGATTTGATGT+TGG | + | chr1.4:29439181-29439200 | MS.gene053460:CDS | 40.0% | |
| GAATCAATGCCATGGAAAGA+TGG | - | chr1.4:29438800-29438819 | None:intergenic | 40.0% | |
| GACATCAGTAGAAGAAGTGA+AGG | + | chr1.4:29437409-29437428 | MS.gene053460:CDS | 40.0% | |
| GATGGTCCATCTAATTTGGA+GGG | - | chr1.4:29437695-29437714 | None:intergenic | 40.0% | |
| GCTAACTTACGATGCAAGAA+AGG | + | chr1.4:29438230-29438249 | MS.gene053460:CDS | 40.0% | |
| GTCCACCTGTTTGCATAATT+TGG | - | chr1.4:29439111-29439130 | None:intergenic | 40.0% | |
| GTTTATGGAGGAGTTCTTGA+TGG | + | chr1.4:29438772-29438791 | MS.gene053460:CDS | 40.0% | |
| GTTTCAGGCTATGTTTATGG+AGG | + | chr1.4:29438760-29438779 | MS.gene053460:intron | 40.0% | |
| TAGGAATGATTGTGCGGTTT+GGG | + | chr1.4:29438966-29438985 | MS.gene053460:intron | 40.0% | |
| TTAGGAATGATTGTGCGGTT+TGG | + | chr1.4:29438965-29438984 | MS.gene053460:intron | 40.0% | |
| ! | GGTGTCTTGGTAACTACAAT+AGG | - | chr1.4:29437632-29437651 | None:intergenic | 40.0% |
| ! | GTTGGCAGAAACCAAGTTTT+AGG | - | chr1.4:29438267-29438286 | None:intergenic | 40.0% |
| ! | TCTCCCGTAACGAATTTGTT+GGG | - | chr1.4:29438085-29438104 | None:intergenic | 40.0% |
| ! | TGTCGTGGAATTCACCATTT+TGG | + | chr1.4:29438386-29438405 | MS.gene053460:CDS | 40.0% |
| ! | TTGATGGATCCATCTTTCCA+TGG | + | chr1.4:29438788-29438807 | MS.gene053460:CDS | 40.0% |
| !!! | TCATCTACACTGGTTCCTTT+TGG | + | chr1.4:29438568-29438587 | MS.gene053460:CDS | 40.0% |
| AGATGGACCATCTATTCCGA+AGG | + | chr1.4:29437703-29437722 | MS.gene053460:CDS | 45.0% | |
| ATTGGGCGCATCATGTAACA+AGG | + | chr1.4:29438038-29438057 | MS.gene053460:intron | 45.0% | |
| GTAGTTACCAAGACACCGTT+GGG | + | chr1.4:29437635-29437654 | MS.gene053460:CDS | 45.0% | |
| TAGTTACCAAGACACCGTTG+GGG | + | chr1.4:29437636-29437655 | MS.gene053460:CDS | 45.0% | |
| TGACTCGTACCAAAGTTCGT+CGG | + | chr1.4:29438625-29438644 | MS.gene053460:CDS | 45.0% | |
| TGTAGTTACCAAGACACCGT+TGG | + | chr1.4:29437634-29437653 | MS.gene053460:CDS | 45.0% | |
| TTATGCAAACAGGTGGACGA+AGG | + | chr1.4:29439113-29439132 | MS.gene053460:intron | 45.0% | |
| TTTAGCGATATGTGCTGTCG+TGG | + | chr1.4:29438371-29438390 | MS.gene053460:intron | 45.0% | |
| ! | AAAAGGTTTGGGACGTCAAG+GGG | + | chr1.4:29438862-29438881 | MS.gene053460:CDS | 45.0% |
| ! | CAAAAGGTTTGGGACGTCAA+GGG | + | chr1.4:29438861-29438880 | MS.gene053460:CDS | 45.0% |
| ! | CTTGACGTCCCAAACCTTTT+GGG | - | chr1.4:29438862-29438881 | None:intergenic | 45.0% |
| ! | GGAGGTGTATCATGTGTACA+AGG | - | chr1.4:29437452-29437471 | None:intergenic | 45.0% |
| ! | GTGCGGTTTGGGTAATTAAC+TGG | + | chr1.4:29438977-29438996 | MS.gene053460:CDS | 45.0% |
| ! | TTGACGTCCCAAACCTTTTG+GGG | - | chr1.4:29438861-29438880 | None:intergenic | 45.0% |
| ! | CAAAGTTCGTCGGTGCTTCA+CGG | + | chr1.4:29438635-29438654 | MS.gene053460:CDS | 50.0% |
| ! | CCAAAAGGTTTGGGACGTCA+AGG | + | chr1.4:29438860-29438879 | MS.gene053460:CDS | 50.0% |
| ! | CCTTGACGTCCCAAACCTTT+TGG | - | chr1.4:29438863-29438882 | None:intergenic | 50.0% |
| CGTGGAACTGTGTACCCCAA+CGG | - | chr1.4:29437653-29437672 | None:intergenic | 55.0% | |
| TGTGTACCCCAACGGTGTCT+TGG | - | chr1.4:29437645-29437664 | None:intergenic | 55.0% | |
| !! | CGTGAAGCACCGACGAACTT+TGG | - | chr1.4:29438637-29438656 | None:intergenic | 55.0% |
| ! | GGTTTGGGACGTCAAGGGGA+TGG | + | chr1.4:29438866-29438885 | MS.gene053460:CDS | 60.0% |
| ! | GTTCGTCGGTGCTTCACGGA+AGG | + | chr1.4:29438639-29438658 | MS.gene053460:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 29437407 | 29439262 | 29437407 | ID=MS.gene053460 |
| chr1.4 | mRNA | 29437407 | 29439262 | 29437407 | ID=MS.gene053460.t1;Parent=MS.gene053460 |
| chr1.4 | exon | 29437407 | 29437724 | 29437407 | ID=MS.gene053460.t1.exon1;Parent=MS.gene053460.t1 |
| chr1.4 | CDS | 29437407 | 29437724 | 29437407 | ID=cds.MS.gene053460.t1;Parent=MS.gene053460.t1 |
| chr1.4 | exon | 29438207 | 29438296 | 29438207 | ID=MS.gene053460.t1.exon2;Parent=MS.gene053460.t1 |
| chr1.4 | CDS | 29438207 | 29438296 | 29438207 | ID=cds.MS.gene053460.t1;Parent=MS.gene053460.t1 |
| chr1.4 | exon | 29438376 | 29438465 | 29438376 | ID=MS.gene053460.t1.exon3;Parent=MS.gene053460.t1 |
| chr1.4 | CDS | 29438376 | 29438465 | 29438376 | ID=cds.MS.gene053460.t1;Parent=MS.gene053460.t1 |
| chr1.4 | exon | 29438548 | 29438682 | 29438548 | ID=MS.gene053460.t1.exon4;Parent=MS.gene053460.t1 |
| chr1.4 | CDS | 29438548 | 29438682 | 29438548 | ID=cds.MS.gene053460.t1;Parent=MS.gene053460.t1 |
| chr1.4 | exon | 29438767 | 29438891 | 29438767 | ID=MS.gene053460.t1.exon5;Parent=MS.gene053460.t1 |
| chr1.4 | CDS | 29438767 | 29438891 | 29438767 | ID=cds.MS.gene053460.t1;Parent=MS.gene053460.t1 |
| chr1.4 | exon | 29438969 | 29439035 | 29438969 | ID=MS.gene053460.t1.exon6;Parent=MS.gene053460.t1 |
| chr1.4 | CDS | 29438969 | 29439035 | 29438969 | ID=cds.MS.gene053460.t1;Parent=MS.gene053460.t1 |
| chr1.4 | exon | 29439125 | 29439262 | 29439125 | ID=MS.gene053460.t1.exon7;Parent=MS.gene053460.t1 |
| chr1.4 | CDS | 29439125 | 29439262 | 29439125 | ID=cds.MS.gene053460.t1;Parent=MS.gene053460.t1 |
| Gene Sequence |
| Protein sequence |
