AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene44728

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44728.t1 MTR_7g016950 88.046 435 30 3 1 434 52 465 4.09e-172 490
MS.gene44728.t1 MTR_6g015995 63.866 119 40 2 1 119 50 165 1.93e-36 137
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44728.t1 AT5G15780 61.607 112 38 3 3 111 61 170 1.46e-29 119

Find 126 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGGTTGTAATGGATTATT+AGG 0.139809 7.2:+81019044 None:intergenic
GGTGGTTGTAATGGATTATT+AGG 0.139809 7.2:+81019416 None:intergenic
GGTGGCTGAAATGGATTATT+AGG 0.210524 7.2:+81018966 None:intergenic
GGTGGTTGTGATGGATTATT+AGG 0.211036 7.2:+81019293 None:intergenic
ATGGGAAATCATTTCATTTC+AGG 0.252182 7.2:-81020839 MS.gene44728:intron
GGGACTAATGGTGGTGGATT+AGG 0.268729 7.2:+81019314 None:intergenic
GGTGGTTGTAATGGATTATT+AGG 0.271477 7.2:+81019347 None:intergenic
TTGACTTGTTTCTTAAATCT+TGG 0.281610 7.2:+81020016 None:intergenic
AATATTGGTGTAAGAATTTC+AGG 0.284581 7.2:+81019605 None:intergenic
TTAGGAATTGTTGGTGTACT+TGG 0.298601 7.2:+81019023 None:intergenic
AGAGGAATTGTTGGATGAAA+TGG 0.304335 7.2:+81019248 None:intergenic
GTTGGAGTTGGTGGTTGAAA+TGG 0.312145 7.2:+81018999 None:intergenic
CATAGATTTGGTTGTTTAAG+TGG 0.335597 7.2:+81019788 None:intergenic
GACAATTCTGGTGGCAATAT+TGG 0.339985 7.2:+81019590 None:intergenic
TTGGAGTTGGTGGTTGAAAT+GGG 0.340519 7.2:+81019000 None:intergenic
TGGATTAGGAGGAAGGTTAA+AGG 0.341986 7.2:+81019088 None:intergenic
ATTGTTGGATGAAATGGATT+AGG 0.344656 7.2:+81019254 None:intergenic
GGACTAATGGTGGTGGATTA+GGG 0.370117 7.2:+81019315 None:intergenic
CCTGATGGAGGTGGCTGAAA+TGG 0.373008 7.2:+81018957 None:intergenic
GGGATTAGTGGTGACAATTC+TGG 0.374287 7.2:+81019578 None:intergenic
GGTGTACTTGGTGGTTGTAA+TGG 0.395161 7.2:+81019035 None:intergenic
ACTAATGGTGTTGGAGTTGG+TGG 0.405016 7.2:+81018990 None:intergenic
AATGGATTATTAGGGACTAA+TGG 0.406439 7.2:+81019053 None:intergenic
AATGGATTATTAGGAACTAA+TGG 0.406439 7.2:+81019356 None:intergenic
AATGGATTATTAGGGACTAA+TGG 0.406439 7.2:+81019425 None:intergenic
GTGGTTGTAATGGATTATTA+GGG 0.406491 7.2:+81019045 None:intergenic
GTGGTTGTAATGGATTATTA+GGG 0.406491 7.2:+81019417 None:intergenic
GGGTTTGGATCTTGAAGTGG+GGG 0.411587 7.2:+81019671 None:intergenic
ACATGTTTGCTCACTGAGAA+TGG 0.424602 7.2:+81019959 None:intergenic
GGAGGGAATAGTGGAGGAAA+AGG 0.424904 7.2:+81018852 None:intergenic
TTAGGAATAGTTGGTGTACT+TGG 0.427639 7.2:+81019395 None:intergenic
AGAAATATTCTTTGTAGAAG+CGG 0.438431 7.2:+81018809 None:intergenic
GGGGTTTGGATCTTGAAGTG+GGG 0.440503 7.2:+81019670 None:intergenic
GAGGAAGGTTAAAGGAATCA+AGG 0.440757 7.2:+81019096 None:intergenic
CTGCCAGGTGGAGGGAATAG+TGG 0.443809 7.2:+81018843 None:intergenic
GGTGTACTTGGTGGTTGTAA+TGG 0.446794 7.2:+81019407 None:intergenic
ACTAATGGTGGTGGTTGAAA+TGG 0.448499 7.2:+81019371 None:intergenic
GCTGAGGCTATAGAACAAAA+TGG 0.449700 7.2:+81019890 None:intergenic
GAAATATTCTTTGTAGAAGC+GGG 0.452227 7.2:+81018810 None:intergenic
ACTAATGTTGGTGGTTGTAA+TGG 0.452664 7.2:+81019338 None:intergenic
GGTGTGCCACTGCCAGGTGG+AGG 0.456151 7.2:+81018834 None:intergenic
GTGGTTGTGATGGATTATTA+GGG 0.456381 7.2:+81019294 None:intergenic
ATTTCAGGTGCTAAAGGAAC+TGG 0.456654 7.2:+81019620 None:intergenic
AATGGATTATTAGGGACTAA+TGG 0.457185 7.2:+81018975 None:intergenic
GGTGGTGGTTGAAATGGATT+AGG 0.459525 7.2:+81019377 None:intergenic
GCGGGAGGTGTGCCACTGCC+AGG 0.459906 7.2:+81018828 None:intergenic
GATGGATTATTAGGGACTAA+TGG 0.461210 7.2:+81019302 None:intergenic
GGAATTGTTGGTGTACTTGG+TGG 0.463583 7.2:+81019026 None:intergenic
GGGACTAGTGGTGACAATAT+TGG 0.463726 7.2:+81019206 None:intergenic
TGAAATGGGTTAGGAATTGT+TGG 0.469104 7.2:+81019014 None:intergenic
ACCTTCATCACCACCAGGAT+TGG 0.469818 7.2:-81018880 MS.gene44728:CDS
GTCATTCCACTAGGGATTAG+TGG 0.471688 7.2:+81019566 None:intergenic
TGATGTAATAGAGGAATTGT+TGG 0.472559 7.2:+81019239 None:intergenic
GGGACTAATGGTGTTGGAGT+TGG 0.475306 7.2:+81018987 None:intergenic
GTTGGTGGTTGAAATGGGTT+AGG 0.478394 7.2:+81019005 None:intergenic
TGAAATGGATTAGGAATAGT+TGG 0.478986 7.2:+81019386 None:intergenic
GTGGCTGAAATGGATTATTA+GGG 0.480817 7.2:+81018967 None:intergenic
GTAAGAATTTCAGGTGCTAA+AGG 0.488289 7.2:+81019614 None:intergenic
GGTGATGAAGGTGGTGGTGA+AGG 0.493855 7.2:+81018891 None:intergenic
CCATTTCAGCCACCTCCATC+AGG 0.494064 7.2:-81018957 MS.gene44728:CDS
GGAAGAATTTGATGTAATAG+AGG 0.494824 7.2:+81019230 None:intergenic
TTATTAGGGACTAATGGTGT+TGG 0.497525 7.2:+81018981 None:intergenic
TCATCACTAGCCTTTCCACT+AGG 0.500789 7.2:+81019185 None:intergenic
CCTCCACTATTCCCTCCACC+TGG 0.514912 7.2:-81018846 MS.gene44728:CDS
CTATTCCCTCCACCTGGCAG+TGG 0.517026 7.2:-81018840 MS.gene44728:CDS
AAACCTGGTACCGACGGAAA+AGG 0.517768 7.2:+81018918 None:intergenic
GGTGGATTAGGGACTAATGT+TGG 0.520712 7.2:+81019326 None:intergenic
GGATTAGGGACTAATGTTGG+TGG 0.526498 7.2:+81019329 None:intergenic
GAGGAATGTGAAAAGTATCA+AGG 0.529046 7.2:+81019468 None:intergenic
GGAAAGGAAGAACACCACTA+GGG 0.536488 7.2:+81019648 None:intergenic
TGCTCACTGAGAATGGAAGT+TGG 0.540570 7.2:+81019966 None:intergenic
GCCAATCCTGGTGGTGATGA+AGG 0.544784 7.2:+81018879 None:intergenic
TCTTCACTAGTCATTCCACT+AGG 0.550151 7.2:+81019557 None:intergenic
TTATTAGGGACTAATGGTGG+TGG 0.550341 7.2:+81019308 None:intergenic
AAAGGAACTGGTGGGAGGAA+AGG 0.551997 7.2:+81019632 None:intergenic
GGAATAGTTGGTGTACTTGG+TGG 0.552196 7.2:+81019398 None:intergenic
GGTGTACTCGGTGGTTGTGA+TGG 0.553565 7.2:+81019284 None:intergenic
TGAAATGAAATGATTTCCCA+TGG 0.558509 7.2:+81020841 None:intergenic
GTGTGCCACTGCCAGGTGGA+GGG 0.559172 7.2:+81018835 None:intergenic
CATCACTAGCCTTTCCACTA+GGG 0.562196 7.2:+81019186 None:intergenic
GGAAAAGGAAAAGCCAATCC+TGG 0.562759 7.2:+81018867 None:intergenic
CACCTAAAATCAAGAAAACA+AGG 0.564101 7.2:-81019848 MS.gene44728:CDS
TTATTAGGGACTAATGGTGG+TGG 0.568223 7.2:+81019059 None:intergenic
CTTCACTAGTCATTCCACTA+GGG 0.571497 7.2:+81019558 None:intergenic
AAACATGTAAGAAGAATCAA+AGG 0.580509 7.2:-81019944 MS.gene44728:CDS
CCACCACCTTCATCACCACC+AGG 0.581200 7.2:-81018885 MS.gene44728:CDS
GTTGAAGTAGAATGCAAGGA+TGG 0.583847 7.2:-81020055 MS.gene44728:CDS
TTATTAGGGACTAATGGTGG+TGG 0.585262 7.2:+81019431 None:intergenic
TTAGGAACAAGTGGTGTACT+CGG 0.586543 7.2:+81019272 None:intergenic
TCAGGTGCTAAAGGAACTGG+TGG 0.587525 7.2:+81019623 None:intergenic
TGATGAAGATGAGGCTGCTG+AGG 0.589656 7.2:+81019874 None:intergenic
GCCTTTCCACTAGGGACTAG+TGG 0.590117 7.2:+81019194 None:intergenic
TATTAGGGACTAATGGTGGT+GGG 0.590783 7.2:+81019432 None:intergenic
ATCAGTTGAAGTAGAATGCA+AGG 0.595283 7.2:-81020059 MS.gene44728:CDS
ACCACTAGTCCCTAGTGGAA+AGG 0.599084 7.2:-81019195 MS.gene44728:CDS
CAAGTCAAAACAAATGAGCA+TGG 0.604334 7.2:-81020001 MS.gene44728:CDS
AGGAAAGGAAGAACACCACT+AGG 0.607599 7.2:+81019647 None:intergenic
GAAAGGAAGAACACCACTAG+GGG 0.611858 7.2:+81019649 None:intergenic
TTATTAGGAACTAATGGTGG+TGG 0.613397 7.2:+81019362 None:intergenic
ACTAGTGGTGACAATATTGG+TGG 0.614134 7.2:+81019209 None:intergenic
GGACTTAAACCTGGTACCGA+CGG 0.615702 7.2:+81018912 None:intergenic
GGATTATTAGGAACTAATGG+TGG 0.626184 7.2:+81019359 None:intergenic
GGATTATTAGGGACTAATGG+TGG 0.630974 7.2:+81019056 None:intergenic
GGATTATTAGGGACTAATGG+TGG 0.630974 7.2:+81019428 None:intergenic
GGAGGTGTGCCACTGCCAGG+TGG 0.635028 7.2:+81018831 None:intergenic
GGTGATGATCCTGATGGAGG+TGG 0.635840 7.2:+81018948 None:intergenic
TGAAATGGATTAGGAACAAG+TGG 0.638457 7.2:+81019263 None:intergenic
GGATTATTAGGGACTAATGG+TGG 0.639754 7.2:+81019305 None:intergenic
CCTGGTGGTGATGAAGGTGG+TGG 0.644332 7.2:+81018885 None:intergenic
ATATTCTTTGTAGAAGCGGG+AGG 0.645103 7.2:+81018813 None:intergenic
CCAGGTGGAGGGAATAGTGG+AGG 0.652970 7.2:+81018846 None:intergenic
TAGGTGAAGTGATGAAGATG+AGG 0.654303 7.2:+81019865 None:intergenic
GGTGGTGAAGGACTTAAACC+TGG 0.654328 7.2:+81018903 None:intergenic
TTGTCACCACTAATCCCTAG+TGG 0.656373 7.2:-81019572 MS.gene44728:CDS
ACCGACGGAAAAGGAAACAA+TGG 0.656858 7.2:+81018927 None:intergenic
TTGTCACCACTAGTCCCTAG+TGG 0.661560 7.2:-81019200 MS.gene44728:CDS
AAGGAAGAACACCACTAGGG+GGG 0.663476 7.2:+81019651 None:intergenic
GTGCTAAAGGAACTGGTGGG+AGG 0.667320 7.2:+81019627 None:intergenic
AACAATGGTGATGATCCTGA+TGG 0.671828 7.2:+81018942 None:intergenic
AAAGGAAGAACACCACTAGG+GGG 0.676816 7.2:+81019650 None:intergenic
ATTAGTGGTGACAATTCTGG+TGG 0.683000 7.2:+81019581 None:intergenic
AATCCTGGTGGTGATGAAGG+TGG 0.692654 7.2:+81018882 None:intergenic
AAAGGAAAAGCCAATCCTGG+TGG 0.701193 7.2:+81018870 None:intergenic
GGAACAAGTGGTGTACTCGG+TGG 0.722792 7.2:+81019275 None:intergenic
CAGGTGCTAAAGGAACTGGT+GGG 0.724952 7.2:+81019624 None:intergenic
AATGGTGATGATCCTGATGG+AGG 0.729850 7.2:+81018945 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAATTTTTTGTTGATT+TGG + chr7.2:81020491-81020510 None:intergenic 10.0%
!!! AATTGTCTTATTTTTTTCAA+GGG - chr7.2:81018844-81018863 MS.gene44728:CDS 15.0%
!!! TAATTGTCTTATTTTTTTCA+AGG - chr7.2:81018843-81018862 MS.gene44728:CDS 15.0%
!! TGTTAAAATATTGCATGAAA+AGG + chr7.2:81019094-81019113 None:intergenic 20.0%
!! TTAAACTTACATTTGAACTA+CGG + chr7.2:81019407-81019426 None:intergenic 20.0%
!!! ATTTTTAAAACATAGCTTTC+AGG - chr7.2:81019472-81019491 MS.gene44728:CDS 20.0%
!!! ATTTTTTGTTGATTTGGATT+TGG + chr7.2:81020485-81020504 None:intergenic 20.0%
!!! GAAAGCTATGTTTTAAAAAT+TGG + chr7.2:81019472-81019491 None:intergenic 20.0%
! AAAATATTGCATGAAAAGGT+CGG + chr7.2:81019090-81019109 None:intergenic 25.0%
! AAACATGTAAGAAGAATCAA+AGG - chr7.2:81019698-81019717 MS.gene44728:CDS 25.0%
! AATATGGAAGTGAACAAAAA+TGG + chr7.2:81019179-81019198 None:intergenic 25.0%
! AATATTGGTGTAAGAATTTC+AGG + chr7.2:81020040-81020059 None:intergenic 25.0%
! ACAATTAAGCAGTTAAGAAA+TGG + chr7.2:81018830-81018849 None:intergenic 25.0%
! AGAAATATTCTTTGTAGAAG+CGG + chr7.2:81020836-81020855 None:intergenic 25.0%
! TAAAAAATATTCTTGTGTGC+AGG - chr7.2:81019557-81019576 MS.gene44728:CDS 25.0%
! TGTTGATCAAAACACAAAAA+AGG - chr7.2:81019892-81019911 MS.gene44728:CDS 25.0%
!!! AATGGATTATTAGGAACTAA+TGG + chr7.2:81020289-81020308 None:intergenic 25.0%
!!! TTGACTTGTTTCTTAAATCT+TGG + chr7.2:81019629-81019648 None:intergenic 25.0%
!!! TTTTAAAAACCCTAATGAAC+CGG - chr7.2:81019309-81019328 MS.gene44728:CDS 25.0%
ATGGGAAATCATTTCATTTC+AGG - chr7.2:81018803-81018822 MS.gene44728:CDS 30.0%
CACCTAAAATCAAGAAAACA+AGG - chr7.2:81019794-81019813 MS.gene44728:CDS 30.0%
GAAATATTCTTTGTAGAAGC+GGG + chr7.2:81020835-81020854 None:intergenic 30.0%
GGAAGAATTTGATGTAATAG+AGG + chr7.2:81020415-81020434 None:intergenic 30.0%
TGATGTAATAGAGGAATTGT+TGG + chr7.2:81020406-81020425 None:intergenic 30.0%
! ATTGTTGGATGAAATGGATT+AGG + chr7.2:81020391-81020410 None:intergenic 30.0%
! CATAGATTTGGTTGTTTAAG+TGG + chr7.2:81019857-81019876 None:intergenic 30.0%
!! AAAGAAGGATCAATTTTTGG+AGG + chr7.2:81019947-81019966 None:intergenic 30.0%
!! AATGGATTATTAGGGACTAA+TGG + chr7.2:81020220-81020239 None:intergenic 30.0%
!! GTGGTTGTAATGGATTATTA+GGG + chr7.2:81020228-81020247 None:intergenic 30.0%
!! TGAAATGGATTAGGAATAGT+TGG + chr7.2:81020259-81020278 None:intergenic 30.0%
!! TTTGATCAACACTTGGTTTT+TGG + chr7.2:81019883-81019902 None:intergenic 30.0%
!!! GGTTTTTGGTTACATAGATT+TGG + chr7.2:81019869-81019888 None:intergenic 30.0%
!!! GTCCTTGTTTTCTTGATTTT+AGG + chr7.2:81019799-81019818 None:intergenic 30.0%
!!! TTTGTGTTTTGATCAACACT+TGG + chr7.2:81019890-81019909 None:intergenic 30.0%
AGAGGAATTGTTGGATGAAA+TGG + chr7.2:81020397-81020416 None:intergenic 35.0%
ATCAGTTGAAGTAGAATGCA+AGG - chr7.2:81019583-81019602 MS.gene44728:CDS 35.0%
CAAGTCAAAACAAATGAGCA+TGG - chr7.2:81019641-81019660 MS.gene44728:CDS 35.0%
GGATTATTAGGAACTAATGG+TGG + chr7.2:81020286-81020305 None:intergenic 35.0%
GGGGAGTTATTATGGAAATA+TGG + chr7.2:81019195-81019214 None:intergenic 35.0%
TCTTAATTGTTTCAACCGTC+CGG + chr7.2:81019331-81019350 None:intergenic 35.0%
TTAGGAATTGTTGGTGTACT+TGG + chr7.2:81020622-81020641 None:intergenic 35.0%
TTATTAGGAACTAATGGTGG+TGG + chr7.2:81020283-81020302 None:intergenic 35.0%
TTATTAGGGACTAATGGTGT+TGG + chr7.2:81020664-81020683 None:intergenic 35.0%
TTGGGTGTTAAGTGCTTTAT+AGG - chr7.2:81019064-81019083 MS.gene44728:CDS 35.0%
! CTTGAGATTGAAAGTGTGTT+TGG - chr7.2:81018959-81018978 MS.gene44728:CDS 35.0%
! GGGAAAGAAGGATCAATTTT+TGG + chr7.2:81019950-81019969 None:intergenic 35.0%
! GTAAGAATTTCAGGTGCTAA+AGG + chr7.2:81020031-81020050 None:intergenic 35.0%
! TGATGTGTCACTATTGTGTT+GGG - chr7.2:81019046-81019065 MS.gene44728:CDS 35.0%
! TTAGGAATAGTTGGTGTACT+TGG + chr7.2:81020250-81020269 None:intergenic 35.0%
! TTGATGTGTCACTATTGTGT+TGG - chr7.2:81019045-81019064 MS.gene44728:CDS 35.0%
!! ACTAATGGTGGTGGAAAAAA+TGG + chr7.2:81020577-81020596 None:intergenic 35.0%
!! ACTAATGTTGGTGGTTGTAA+TGG + chr7.2:81020307-81020326 None:intergenic 35.0%
!! GAAAAAATGGATTAGGAGGA+AGG + chr7.2:81020564-81020583 None:intergenic 35.0%
!! GAGGAATGTGAAAAGTATCA+AGG + chr7.2:81020177-81020196 None:intergenic 35.0%
!! GATGGATTATTAGGGACTAA+TGG + chr7.2:81020343-81020362 None:intergenic 35.0%
!! GGTGGTTGTAATGGATTATT+AGG + chr7.2:81020229-81020248 None:intergenic 35.0%
!! GTGGCTGAAATGGATTATTA+GGG + chr7.2:81020678-81020697 None:intergenic 35.0%
!! GTGGTTGTGATGGATTATTA+GGG + chr7.2:81020351-81020370 None:intergenic 35.0%
!! TGAAATGGATTAGGAACAAG+TGG + chr7.2:81020382-81020401 None:intergenic 35.0%
!! TGAAATGGGTTAGGAATTGT+TGG + chr7.2:81020631-81020650 None:intergenic 35.0%
!! TTAAGAGCTGACTAGTTTAC+TGG - chr7.2:81019345-81019364 MS.gene44728:CDS 35.0%
AAAAACCCTAATGAACCGGA+CGG - chr7.2:81019313-81019332 MS.gene44728:CDS 40.0%
AATTCACGGGGGAGTTATTA+TGG + chr7.2:81019203-81019222 None:intergenic 40.0%
AATTGGAGCGAAGATCGAAT+AGG + chr7.2:81019455-81019474 None:intergenic 40.0%
ACATGTTTGCTCACTGAGAA+TGG + chr7.2:81019686-81019705 None:intergenic 40.0%
ACTAGTGGTGACAATATTGG+TGG + chr7.2:81020436-81020455 None:intergenic 40.0%
ATATTCTTTGTAGAAGCGGG+AGG + chr7.2:81020832-81020851 None:intergenic 40.0%
ATTAGTGGTGACAATTCTGG+TGG + chr7.2:81020064-81020083 None:intergenic 40.0%
CAATGAAAAAGCAAGCCTAG+CGG + chr7.2:81019226-81019245 None:intergenic 40.0%
CTTCACTAGTCATTCCACTA+GGG + chr7.2:81020087-81020106 None:intergenic 40.0%
GACAATTCTGGTGGCAATAT+TGG + chr7.2:81020055-81020074 None:intergenic 40.0%
GAGGAAGGTTAAAGGAATCA+AGG + chr7.2:81020549-81020568 None:intergenic 40.0%
GCTGAGGCTATAGAACAAAA+TGG + chr7.2:81019755-81019774 None:intergenic 40.0%
GGAAGTGAACAAAAATGGCT+TGG + chr7.2:81019174-81019193 None:intergenic 40.0%
GGATTATTAGGGACTAATGG+TGG + chr7.2:81020217-81020236 None:intergenic 40.0%
GTTGAAGTAGAATGCAAGGA+TGG - chr7.2:81019587-81019606 MS.gene44728:CDS 40.0%
TAGGTGAAGTGATGAAGATG+AGG + chr7.2:81019780-81019799 None:intergenic 40.0%
TATTAGGGACTAATGGTGGT+GGG + chr7.2:81020213-81020232 None:intergenic 40.0%
TCTTCACTAGTCATTCCACT+AGG + chr7.2:81020088-81020107 None:intergenic 40.0%
TTAGGAACAAGTGGTGTACT+CGG + chr7.2:81020373-81020392 None:intergenic 40.0%
TTATTAGGGACTAATGGTGG+TGG + chr7.2:81020214-81020233 None:intergenic 40.0%
! AACAATGGTGATGATCCTGA+TGG + chr7.2:81020703-81020722 None:intergenic 40.0%
! ACCATTGTTTCCTTTTCCGT+CGG - chr7.2:81020714-81020733 MS.gene44728:intron 40.0%
! AGTGAACAAAAATGGCTTGG+TGG + chr7.2:81019171-81019190 None:intergenic 40.0%
! ATTTCAGGTGCTAAAGGAAC+TGG + chr7.2:81020025-81020044 None:intergenic 40.0%
! GGACTACACATATTTTCAGC+AGG - chr7.2:81019815-81019834 MS.gene44728:CDS 40.0%
! TGGATTAGGAGGAAGGTTAA+AGG + chr7.2:81020557-81020576 None:intergenic 40.0%
!! ACTAATGGTGGTGGGAAAAA+TGG + chr7.2:81020205-81020224 None:intergenic 40.0%
!! ACTAATGGTGGTGGTTGAAA+TGG + chr7.2:81020274-81020293 None:intergenic 40.0%
!! GGTGGAAAAAATGGATTAGG+AGG + chr7.2:81020568-81020587 None:intergenic 40.0%
!! GGTGGCTGAAATGGATTATT+AGG + chr7.2:81020679-81020698 None:intergenic 40.0%
!! GGTGGTGGAAAAAATGGATT+AGG + chr7.2:81020571-81020590 None:intergenic 40.0%
!! GGTGGTTGTGATGGATTATT+AGG + chr7.2:81020352-81020371 None:intergenic 40.0%
!! TGTTGTTTCGCTGTGCATTT+GGG - chr7.2:81019252-81019271 MS.gene44728:CDS 40.0%
!! TTGGAGTTGGTGGTTGAAAT+GGG + chr7.2:81020645-81020664 None:intergenic 40.0%
!! TTGTTGTTTCGCTGTGCATT+TGG - chr7.2:81019251-81019270 MS.gene44728:CDS 40.0%
!!! TAGGCTTGCTTTTTCATTGG+TGG - chr7.2:81019227-81019246 MS.gene44728:CDS 40.0%
AAAGGAAAAGCCAATCCTGG+TGG + chr7.2:81020775-81020794 None:intergenic 45.0%
AAAGGAAGAACACCACTAGG+GGG + chr7.2:81019995-81020014 None:intergenic 45.0%
ACCGACGGAAAAGGAAACAA+TGG + chr7.2:81020718-81020737 None:intergenic 45.0%
AGGAAAGGAAGAACACCACT+AGG + chr7.2:81019998-81020017 None:intergenic 45.0%
GAAAGGAAGAACACCACTAG+GGG + chr7.2:81019996-81020015 None:intergenic 45.0%
GGAAAAGGAAAAGCCAATCC+TGG + chr7.2:81020778-81020797 None:intergenic 45.0%
GGAAAGGAAGAACACCACTA+GGG + chr7.2:81019997-81020016 None:intergenic 45.0%
GGAATTGTTGGTGTACTTGG+TGG + chr7.2:81020619-81020638 None:intergenic 45.0%
GGATTAGGGACTAATGTTGG+TGG + chr7.2:81020316-81020335 None:intergenic 45.0%
GTCATTCCACTAGGGATTAG+TGG + chr7.2:81020079-81020098 None:intergenic 45.0%
TGCTCACTGAGAATGGAAGT+TGG + chr7.2:81019679-81019698 None:intergenic 45.0%
TTCAACCGTCCGGTTCATTA+GGG + chr7.2:81019321-81019340 None:intergenic 45.0%
TTGTCACCACTAATCCCTAG+TGG - chr7.2:81020070-81020089 MS.gene44728:intron 45.0%
TTTCAACCGTCCGGTTCATT+AGG + chr7.2:81019322-81019341 None:intergenic 45.0%
! AATGGTGATGATCCTGATGG+AGG + chr7.2:81020700-81020719 None:intergenic 45.0%
! ACTAATGGTGTTGGAGTTGG+TGG + chr7.2:81020655-81020674 None:intergenic 45.0%
! ATTTGGGAAAACTGGCTTCG+CGG - chr7.2:81019268-81019287 MS.gene44728:CDS 45.0%
! GGAATAGTTGGTGTACTTGG+TGG + chr7.2:81020247-81020266 None:intergenic 45.0%
! GGGACTAGTGGTGACAATAT+TGG + chr7.2:81020439-81020458 None:intergenic 45.0%
! GGGATTAGTGGTGACAATTC+TGG + chr7.2:81020067-81020086 None:intergenic 45.0%
! GGTGGTGGTTGAAATGGATT+AGG + chr7.2:81020268-81020287 None:intergenic 45.0%
! GGTGTACTTGGTGGTTGTAA+TGG + chr7.2:81020238-81020257 None:intergenic 45.0%
!! CATCACTAGCCTTTCCACTA+GGG + chr7.2:81020459-81020478 None:intergenic 45.0%
!! GAGCTGACTAGTTTACTGGT+TGG - chr7.2:81019349-81019368 MS.gene44728:CDS 45.0%
!! GGACTAATGGTGGTGGATTA+GGG + chr7.2:81020330-81020349 None:intergenic 45.0%
!! GGTGGATTAGGGACTAATGT+TGG + chr7.2:81020319-81020338 None:intergenic 45.0%
!! GGTGGGAAAAATGGATTAGG+AGG + chr7.2:81020196-81020215 None:intergenic 45.0%
!! GGTGGTGGGAAAAATGGATT+AGG + chr7.2:81020199-81020218 None:intergenic 45.0%
!! GTTGGAGTTGGTGGTTGAAA+TGG + chr7.2:81020646-81020665 None:intergenic 45.0%
!! GTTGGTGGTTGAAATGGGTT+AGG + chr7.2:81020640-81020659 None:intergenic 45.0%
!! TCATCACTAGCCTTTCCACT+AGG + chr7.2:81020460-81020479 None:intergenic 45.0%
!!! CGCTAGGCTTGCTTTTTCAT+TGG - chr7.2:81019224-81019243 MS.gene44728:CDS 45.0%
AAAGGAACTGGTGGGAGGAA+AGG + chr7.2:81020013-81020032 None:intergenic 50.0%
AAGGAAGAACACCACTAGGG+GGG + chr7.2:81019994-81020013 None:intergenic 50.0%
ACCACTAGTCCCTAGTGGAA+AGG - chr7.2:81020447-81020466 MS.gene44728:intron 50.0%
ACCTTCATCACCACCAGGAT+TGG - chr7.2:81020762-81020781 MS.gene44728:intron 50.0%
AGCAAGCCTAGCGGAATTCA+CGG + chr7.2:81019217-81019236 None:intergenic 50.0%
CAGGTGCTAAAGGAACTGGT+GGG + chr7.2:81020021-81020040 None:intergenic 50.0%
CGCTGTGCATTTGGGAAAAC+TGG - chr7.2:81019260-81019279 MS.gene44728:CDS 50.0%
GGGGGTTTGGATCTTGAAGT+GGG + chr7.2:81019976-81019995 None:intergenic 50.0%
GGGGTTTGGATCTTGAAGTG+GGG + chr7.2:81019975-81019994 None:intergenic 50.0%
GGGTTTGGATCTTGAAGTGG+GGG + chr7.2:81019974-81019993 None:intergenic 50.0%
GGTGGTGAAGGACTTAAACC+TGG + chr7.2:81020742-81020761 None:intergenic 50.0%
TCAGGTGCTAAAGGAACTGG+TGG + chr7.2:81020022-81020041 None:intergenic 50.0%
TGATGAAGATGAGGCTGCTG+AGG + chr7.2:81019771-81019790 None:intergenic 50.0%
TTGGATCTTGAAGTGGGGGT+GGG + chr7.2:81019970-81019989 None:intergenic 50.0%
TTGTCACCACTAGTCCCTAG+TGG - chr7.2:81020442-81020461 MS.gene44728:intron 50.0%
TTTGGATCTTGAAGTGGGGG+TGG + chr7.2:81019971-81019990 None:intergenic 50.0%
! AATCCTGGTGGTGATGAAGG+TGG + chr7.2:81020763-81020782 None:intergenic 50.0%
! GGACTTAAACCTGGTACCGA+CGG + chr7.2:81020733-81020752 None:intergenic 50.0%
! GGAGGGAATAGTGGAGGAAA+AGG + chr7.2:81020793-81020812 None:intergenic 50.0%
! GGGACTAATGGTGTTGGAGT+TGG + chr7.2:81020658-81020677 None:intergenic 50.0%
! TTTCCTTTTCCGTCGGTACC+AGG - chr7.2:81020721-81020740 MS.gene44728:intron 50.0%
!! AAACCTGGTACCGACGGAAA+AGG + chr7.2:81020727-81020746 None:intergenic 50.0%
!! GGGACTAATGGTGGTGGATT+AGG + chr7.2:81020331-81020350 None:intergenic 50.0%
AAGCCTAGCGGAATTCACGG+GGG + chr7.2:81019214-81019233 None:intergenic 55.0%
AGAACACCACTAGGGGGGTT+TGG + chr7.2:81019989-81020008 None:intergenic 55.0%
CAAGATCCAAACCCCCCTAG+TGG - chr7.2:81019980-81019999 MS.gene44728:CDS 55.0%
CAAGCCTAGCGGAATTCACG+GGG + chr7.2:81019215-81019234 None:intergenic 55.0%
CCATTTCAGCCACCTCCATC+AGG - chr7.2:81020685-81020704 MS.gene44728:intron 55.0%
CCTGATGGAGGTGGCTGAAA+TGG + chr7.2:81020688-81020707 None:intergenic 55.0%
GCAAGCCTAGCGGAATTCAC+GGG + chr7.2:81019216-81019235 None:intergenic 55.0%
GCCTTTCCACTAGGGACTAG+TGG + chr7.2:81020451-81020470 None:intergenic 55.0%
GGAACAAGTGGTGTACTCGG+TGG + chr7.2:81020370-81020389 None:intergenic 55.0%
GGGGGGTTTGGATCTTGAAG+TGG + chr7.2:81019977-81019996 None:intergenic 55.0%
GGTGATGATCCTGATGGAGG+TGG + chr7.2:81020697-81020716 None:intergenic 55.0%
GTGCTAAAGGAACTGGTGGG+AGG + chr7.2:81020018-81020037 None:intergenic 55.0%
TGAAGTGGGGGTGGGAAAGA+AGG + chr7.2:81019962-81019981 None:intergenic 55.0%
! GCCAATCCTGGTGGTGATGA+AGG + chr7.2:81020766-81020785 None:intergenic 55.0%
! GGTGATGAAGGTGGTGGTGA+AGG + chr7.2:81020754-81020773 None:intergenic 55.0%
! GGTGTACTCGGTGGTTGTGA+TGG + chr7.2:81020361-81020380 None:intergenic 55.0%
ACTCCCCCGTGAATTCCGCT+AGG - chr7.2:81019208-81019227 MS.gene44728:CDS 60.0%
CCACCACCTTCATCACCACC+AGG - chr7.2:81020757-81020776 MS.gene44728:intron 60.0%
CCAGGTGGAGGGAATAGTGG+AGG + chr7.2:81020799-81020818 None:intergenic 60.0%
CCTCCACTATTCCCTCCACC+TGG - chr7.2:81020796-81020815 MS.gene44728:intron 60.0%
CTATTCCCTCCACCTGGCAG+TGG - chr7.2:81020802-81020821 MS.gene44728:intron 60.0%
CTGCCAGGTGGAGGGAATAG+TGG + chr7.2:81020802-81020821 None:intergenic 60.0%
! CCTGGTGGTGATGAAGGTGG+TGG + chr7.2:81020760-81020779 None:intergenic 60.0%
! GTGTGCCACTGCCAGGTGGA+GGG + chr7.2:81020810-81020829 None:intergenic 65.0%
! GGAGGTGTGCCACTGCCAGG+TGG + chr7.2:81020814-81020833 None:intergenic 70.0%
! GGTGTGCCACTGCCAGGTGG+AGG + chr7.2:81020811-81020830 None:intergenic 70.0%
! GCGGGAGGTGTGCCACTGCC+AGG + chr7.2:81020817-81020836 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 81018803 81020861 81018803 ID=MS.gene44728
chr7.2 mRNA 81018803 81020861 81018803 ID=MS.gene44728.t1;Parent=MS.gene44728
chr7.2 exon 81020840 81020861 81020840 ID=MS.gene44728.t1.exon1;Parent=MS.gene44728.t1
chr7.2 CDS 81020840 81020861 81020840 ID=cds.MS.gene44728.t1;Parent=MS.gene44728.t1
chr7.2 exon 81018803 81020085 81018803 ID=MS.gene44728.t1.exon2;Parent=MS.gene44728.t1
chr7.2 CDS 81018803 81020085 81018803 ID=cds.MS.gene44728.t1;Parent=MS.gene44728.t1
Gene Sequence

>MS.gene44728

ATGGGAAATCATTTCATTTCAGGTCCATTTCTTAACTGCTTAATTGTCTTATTTTTTTCAAGGGAATTCAATTTTATATGTCTATATAGTCTATACAAGCTGCTAAATTAGATAACAACTATGTAATACATGTTGCTTAAAAAAAACTATGTAACACTTGAGATTGAAAGTGTGTTTGGTATTTGACACTGATACATATATGATTACATTCAATTGTTTTTATTTTTAAATTATTATCTGTGTTGATGTGTCACTATTGTGTTGGGTGTTAAGTGCTTTATAGGCCGACCTTTTCATGCAATATTTTAACAATAATGCTATTTATCGCGAATTTTAATTACTCGACTTATCACGACATGTGTTTTCCACCAAGCCATTTTTGTTCACTTCCATATTTCCATAATAACTCCCCCGTGAATTCCGCTAGGCTTGCTTTTTCATTGGTGGATTGTTGTTTCGCTGTGCATTTGGGAAAACTGGCTTCGCGGTATATAGTACTATTGATATTTTAAAAACCCTAATGAACCGGACGGTTGAAACAATTAAGAGCTGACTAGTTTACTGGTTGGTTTAATCTCGATTACATTGCAGTCTAATTGAACCGTAGTTCAAATGTAAGTTTAATCAATTAAATCATGATCGTCTCTCACCTATTCGATCTTCGCTCCAATTTTTAAAACATAGCTTTCAGGTGTTGTGTTGTATAAATTGTATACTGATGTTATGTTATGATATGCTATGATATGCTGTGCTATAAAAAATATTCTTGTGTGCAGGTGCATCAGTTGAAGTAGAATGCAAGGATGGAAATGAAATTTCAAAACCAAGATTTAAGAAACAAGTCAAAACAAATGAGCATGGTGAATTCAAAATCCAACTTCCATTCTCAGTGAGCAAACATGTAAGAAGAATCAAAGGATGTGTAGTGAAATTAGTAAGCAGCAATGAACCATTTTGTTCTATAGCCTCAGCAGCCTCATCTTCATCACTTCACCTAAAATCAAGAAAACAAGGACTACACATATTTTCAGCAGGTTTTTTCTCATTCAAACCACTTAAACAACCAAATCTATGTAACCAAAAACCAAGTGTTGATCAAAACACAAAAAAGGTTATTGATTCTTTGAAAAAAACTTCACTTCCTCCAAAAATTGATCCTTCTTTCCCACCCCCACTTCAAGATCCAAACCCCCCTAGTGGTGTTCTTCCTTTCCTCCCACCAGTTCCTTTAGCACCTGAAATTCTTACACCAATATTGCCACCAGAATTGTCACCACTAATCCCTAGTGGAATGACTAGTGAAGAATCTAAATACAAATCAACTAAAAGTTCAAAAAATGTTCAATCTTCAGATGAAAAAAAAGTAATTAACCTTGATACTTTTCACATTCCTCCTAATCCATTTTTCCCACCACCATTAGTCCCTAATAATCCATTACAACCACCAAGTACACCAACTATTCCTAATCCATTTCAACCACCACCATTAGTTCCTAATAATCCATTACAACCACCAACATTAGTCCCTAATCCACCACCATTAGTCCCTAATAATCCATCACAACCACCGAGTACACCACTTGTTCCTAATCCATTTCATCCAACAATTCCTCTATTACATCAAATTCTTCCACCAATATTGTCACCACTAGTCCCTAGTGGAAAGGCTAGTGATGAATCCAAATCCAAATCAACAAAAAATTTAAAAAATGTTGAATCATTAGATGAAAAAAAAGCAACTAACCTTGATTCCTTTAACCTTCCTCCTAATCCATTTTTTCCACCACCATTAGTCCCTAATAATCCATTACAACCACCAAGTACACCAACAATTCCTAACCCATTTCAACCACCAACTCCAACACCATTAGTCCCTAATAATCCATTTCAGCCACCTCCATCAGGATCATCACCATTGTTTCCTTTTCCGTCGGTACCAGGTTTAAGTCCTTCACCACCACCTTCATCACCACCAGGATTGGCTTTTCCTTTTCCTCCACTATTCCCTCCACCTGGCAGTGGCACACCTCCCGCTTCTACAAAGAATATTTCTCCTTAA
Protein sequence

>MS.gene44728.t1

MGNHFISGASVEVECKDGNEISKPRFKKQVKTNEHGEFKIQLPFSVSKHVRRIKGCVVKLVSSNEPFCSIASAASSSSLHLKSRKQGLHIFSAGFFSFKPLKQPNLCNQKPSVDQNTKKVIDSLKKTSLPPKIDPSFPPPLQDPNPPSGVLPFLPPVPLAPEILTPILPPELSPLIPSGMTSEESKYKSTKSSKNVQSSDEKKVINLDTFHIPPNPFFPPPLVPNNPLQPPSTPTIPNPFQPPPLVPNNPLQPPTLVPNPPPLVPNNPSQPPSTPLVPNPFHPTIPLLHQILPPILSPLVPSGKASDESKSKSTKNLKNVESLDEKKATNLDSFNLPPNPFFPPPLVPNNPLQPPSTPTIPNPFQPPTPTPLVPNNPFQPPPSGSSPLFPFPSVPGLSPSPPPSSPPGLAFPFPPLFPPPGSGTPPASTKNISP