Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056306.t1 | XP_003621548.1 | 83.4 | 434 | 48 | 3 | 1 | 430 | 52 | 465 | 6.00E-91 | 344.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056306.t1 | Q2HSE9 | 83.4 | 434 | 48 | 3 | 1 | 430 | 52 | 465 | 4.3e-91 | 344.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056306 | MS.gene060005 | 0.809196 | 2.13E-50 | -1.69E-46 |
| MS.gene056306 | MS.gene072196 | 0.813874 | 2.05E-51 | -1.69E-46 |
| MS.gene056306 | MS.gene36610 | 0.814099 | 1.83E-51 | -1.69E-46 |
| MS.gene056306 | MS.gene41950 | 0.801583 | 8.41E-49 | -1.69E-46 |
| MS.gene056306 | MS.gene44728 | 0.825894 | 3.65E-54 | -1.69E-46 |
| MS.gene056306 | MS.gene81671 | 0.801609 | 8.31E-49 | -1.69E-46 |
| MS.gene056306 | MS.gene90618 | 0.801364 | 9.32E-49 | -1.69E-46 |
| MS.gene056306 | MS.gene94503 | 0.80811 | 3.64E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056306.t1 | MTR_7g016950 | 86.667 | 435 | 32 | 4 | 1 | 430 | 52 | 465 | 7.63e-168 | 479 |
| MS.gene056306.t1 | MTR_6g015995 | 59.259 | 135 | 49 | 3 | 1 | 132 | 50 | 181 | 2.31e-37 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056306.t1 | AT5G15780 | 62.500 | 112 | 37 | 3 | 3 | 111 | 61 | 170 | 6.49e-30 | 120 |
Find 128 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGTTGTAATGGATTATT+AGG | 0.139809 | 7.3:+81726223 | None:intergenic |
| GGTGGTTGTAATGGATTATT+AGG | 0.171184 | 7.3:+81726583 | None:intergenic |
| GGTGGCTGAAATGGATTATT+AGG | 0.210524 | 7.3:+81726145 | None:intergenic |
| GGTGGTTGTGATGGATTATT+AGG | 0.215491 | 7.3:+81726460 | None:intergenic |
| ATGGGAAATCATTTCATTTC+AGG | 0.252182 | 7.3:-81727988 | MS.gene056306:intron |
| TTGACTTGTTTCTTGAATCT+TGG | 0.263993 | 7.3:+81727183 | None:intergenic |
| GGGACTAATGGTGGTGGATT+AGG | 0.268729 | 7.3:+81726481 | None:intergenic |
| GGTGGTTGTAATGGATTATT+AGG | 0.271477 | 7.3:+81726514 | None:intergenic |
| AATATTGGTGTAAGAATTTC+AGG | 0.284581 | 7.3:+81726772 | None:intergenic |
| TTAGGAATTGTTGGTGTACT+TGG | 0.298601 | 7.3:+81726202 | None:intergenic |
| AGAGGAATTGTTGGATGAAA+TGG | 0.304335 | 7.3:+81726415 | None:intergenic |
| GTTGGAGTTGGTGGTTGAAA+TGG | 0.312145 | 7.3:+81726178 | None:intergenic |
| CATAGATTTGGTTGTTTAAG+TGG | 0.335597 | 7.3:+81726955 | None:intergenic |
| GACAATTCTGGTGGCAATAT+TGG | 0.339985 | 7.3:+81726757 | None:intergenic |
| TTGGAGTTGGTGGTTGAAAT+GGG | 0.340519 | 7.3:+81726179 | None:intergenic |
| TGGATTAGGAGGAAGGTTAA+AGG | 0.341986 | 7.3:+81726267 | None:intergenic |
| ATTGTTGGATGAAATGGATT+AGG | 0.344656 | 7.3:+81726421 | None:intergenic |
| GGACTAATGGTGGTGGATTA+GGG | 0.370117 | 7.3:+81726482 | None:intergenic |
| CCTGATGGAGGTGGCTGAAA+TGG | 0.373008 | 7.3:+81726136 | None:intergenic |
| GGGATTAGTGGTGACAATTC+TGG | 0.374287 | 7.3:+81726745 | None:intergenic |
| CCTCCACTATTCCCTCCACC+TGG | 0.374821 | 7.3:-81726025 | MS.gene056306:CDS |
| ACATGTTTGCTCACTGAGAA+TGG | 0.386130 | 7.3:+81727126 | None:intergenic |
| GGTGTACTTGGTGGTTGTAA+TGG | 0.395161 | 7.3:+81726214 | None:intergenic |
| AGAAACATTCTTTGTAGAAG+TGG | 0.401818 | 7.3:+81725988 | None:intergenic |
| ACTAATGGTGTTGGAGTTGG+TGG | 0.405016 | 7.3:+81726169 | None:intergenic |
| AATGGATTATTAGGGACTAA+TGG | 0.406439 | 7.3:+81726232 | None:intergenic |
| AATGGATTATTAGGAACTAA+TGG | 0.406439 | 7.3:+81726523 | None:intergenic |
| AATGGATTATTAGGGACTAA+TGG | 0.406439 | 7.3:+81726592 | None:intergenic |
| GTGGTTGTAATGGATTATTA+GGG | 0.406491 | 7.3:+81726224 | None:intergenic |
| GGGTTTGGATCTTGAAGTGG+GGG | 0.411587 | 7.3:+81726838 | None:intergenic |
| GGAGGGAATAGTGGAGGAAA+AGG | 0.424904 | 7.3:+81726031 | None:intergenic |
| GTGGTTGTGATGGATTATTA+GGG | 0.425540 | 7.3:+81726461 | None:intergenic |
| GTCATTCCACTAGGGATTAG+TGG | 0.431829 | 7.3:+81726733 | None:intergenic |
| CTCCCAGGTGGAGGGAATAG+TGG | 0.437450 | 7.3:+81726022 | None:intergenic |
| GGGGTTTGGATCTTGAAGTG+GGG | 0.440503 | 7.3:+81726837 | None:intergenic |
| GAGGAAGGTTAAAGGAATCA+AGG | 0.440757 | 7.3:+81726275 | None:intergenic |
| ACTAATGGTGGTGGTTGAAA+TGG | 0.448499 | 7.3:+81726538 | None:intergenic |
| GCTGAGGCTATAGAACAAAA+TGG | 0.449700 | 7.3:+81727057 | None:intergenic |
| ACTAATGTTGGTGGTTGTAA+TGG | 0.452664 | 7.3:+81726505 | None:intergenic |
| GGTGTGCCACTCCCAGGTGG+AGG | 0.456151 | 7.3:+81726013 | None:intergenic |
| ATTTCAGGTGCTAAAGGAAC+TGG | 0.456654 | 7.3:+81726787 | None:intergenic |
| AATGGATTATTAGGGACTAA+TGG | 0.457185 | 7.3:+81726154 | None:intergenic |
| GGTGGTGGTTGAAATGGATT+AGG | 0.459525 | 7.3:+81726544 | None:intergenic |
| GATGGATTATTAGGGACTAA+TGG | 0.461210 | 7.3:+81726469 | None:intergenic |
| GTGGTTGTAATGGATTATTA+GGG | 0.463230 | 7.3:+81726584 | None:intergenic |
| GGAATTGTTGGTGTACTTGG+TGG | 0.463583 | 7.3:+81726205 | None:intergenic |
| GGGACTAGTGGTGACAATAT+TGG | 0.463726 | 7.3:+81726373 | None:intergenic |
| GGTGTACTTGGTGGTTGTGA+TGG | 0.464461 | 7.3:+81726451 | None:intergenic |
| TGAAATGGGTTAGGAATTGT+TGG | 0.469104 | 7.3:+81726193 | None:intergenic |
| ACCTTCATCACCACCAGGAT+TGG | 0.469818 | 7.3:-81726059 | MS.gene056306:CDS |
| GGTGTACGTGGTGGTTGTAA+TGG | 0.471035 | 7.3:+81726574 | None:intergenic |
| TGATGTAATAGAGGAATTGT+TGG | 0.472559 | 7.3:+81726406 | None:intergenic |
| GGGACTAATGGTGTTGGAGT+TGG | 0.475306 | 7.3:+81726166 | None:intergenic |
| GTTGGTGGTTGAAATGGGTT+AGG | 0.478394 | 7.3:+81726184 | None:intergenic |
| TGAAATGGATTAGGAATAGT+TGG | 0.478986 | 7.3:+81726553 | None:intergenic |
| GTGGCTGAAATGGATTATTA+GGG | 0.480817 | 7.3:+81726146 | None:intergenic |
| GTAAGAATTTCAGGTGCTAA+AGG | 0.488289 | 7.3:+81726781 | None:intergenic |
| GTGGGAGGTGTGCCACTCCC+AGG | 0.493596 | 7.3:+81726007 | None:intergenic |
| GGTGATGAAGGTGGTGGTGA+AGG | 0.493855 | 7.3:+81726070 | None:intergenic |
| CCATTTCAGCCACCTCCATC+AGG | 0.494064 | 7.3:-81726136 | MS.gene056306:CDS |
| GGAAGAATTTGATGTAATAG+AGG | 0.494824 | 7.3:+81726397 | None:intergenic |
| TTATTAGGGACTAATGGTGT+TGG | 0.497525 | 7.3:+81726160 | None:intergenic |
| GGACTACACATATTCTCAGC+AGG | 0.499641 | 7.3:-81726994 | MS.gene056306:CDS |
| GAAACATTCTTTGTAGAAGT+GGG | 0.503569 | 7.3:+81725989 | None:intergenic |
| GTTGAAGTAGAATGCAAAGA+TGG | 0.517678 | 7.3:-81727222 | MS.gene056306:CDS |
| AAACCTGGTACCGACGGAAA+AGG | 0.517768 | 7.3:+81726097 | None:intergenic |
| GGTGGATTAGGGACTAATGT+TGG | 0.520712 | 7.3:+81726493 | None:intergenic |
| TTGGAACTAGCCTTTCCACT+AGG | 0.522977 | 7.3:+81726352 | None:intergenic |
| CTATTCCCTCCACCTGGGAG+TGG | 0.523383 | 7.3:-81726019 | MS.gene056306:CDS |
| GGATTAGGGACTAATGTTGG+TGG | 0.526498 | 7.3:+81726496 | None:intergenic |
| GAGGAATGTGAAAAGTATCA+AGG | 0.529046 | 7.3:+81726635 | None:intergenic |
| GGAAAGGAAGAACACCACTA+GGG | 0.536488 | 7.3:+81726815 | None:intergenic |
| TCTTCATTAGTCATTCCACT+AGG | 0.540107 | 7.3:+81726724 | None:intergenic |
| TGCTCACTGAGAATGGAAGT+TGG | 0.540570 | 7.3:+81727133 | None:intergenic |
| AAACATGTGAAGAGAATCAA+AGG | 0.540576 | 7.3:-81727111 | MS.gene056306:CDS |
| GCCAATCCTGGTGGTGATGA+AGG | 0.544784 | 7.3:+81726058 | None:intergenic |
| CTCCACTATTCCCTCCACCT+GGG | 0.548727 | 7.3:-81726024 | MS.gene056306:CDS |
| TTATTAGGGACTAATGGTGG+TGG | 0.550341 | 7.3:+81726475 | None:intergenic |
| AAAGGAACTGGTGGGAGGAA+AGG | 0.551997 | 7.3:+81726799 | None:intergenic |
| TTAGGAACAAGTGGTGTACT+TGG | 0.552344 | 7.3:+81726439 | None:intergenic |
| TGAAATGAAATGATTTCCCA+TGG | 0.558509 | 7.3:+81727990 | None:intergenic |
| TGGAACTAGCCTTTCCACTA+GGG | 0.560670 | 7.3:+81726353 | None:intergenic |
| GGAAAAGGAAAAGCCAATCC+TGG | 0.562759 | 7.3:+81726046 | None:intergenic |
| CACCTAAAATCAAGAAAACA+AGG | 0.564101 | 7.3:-81727015 | MS.gene056306:CDS |
| TTATTAGGGACTAATGGTGG+TGG | 0.568223 | 7.3:+81726238 | None:intergenic |
| CTTCATTAGTCATTCCACTA+GGG | 0.568615 | 7.3:+81726725 | None:intergenic |
| GGAGGTGTGCCACTCCCAGG+TGG | 0.578368 | 7.3:+81726010 | None:intergenic |
| CCACCACCTTCATCACCACC+AGG | 0.581200 | 7.3:-81726064 | MS.gene056306:CDS |
| TTATTAGGGACTAATGGTGG+TGG | 0.585262 | 7.3:+81726598 | None:intergenic |
| GTGTGCCACTCCCAGGTGGA+GGG | 0.585950 | 7.3:+81726014 | None:intergenic |
| TCAGGTGCTAAAGGAACTGG+TGG | 0.587525 | 7.3:+81726790 | None:intergenic |
| TGATGAAGATGAGGCTGCTG+AGG | 0.589656 | 7.3:+81727041 | None:intergenic |
| GCCTTTCCACTAGGGACTAG+TGG | 0.590117 | 7.3:+81726361 | None:intergenic |
| TATTAGGGACTAATGGTGGT+GGG | 0.590783 | 7.3:+81726599 | None:intergenic |
| ACCACTAGTCCCTAGTGGAA+AGG | 0.599084 | 7.3:-81726362 | MS.gene056306:CDS |
| CAAGTCAAAACAAATGAGCA+TGG | 0.604334 | 7.3:-81727168 | MS.gene056306:CDS |
| AGGAAAGGAAGAACACCACT+AGG | 0.607599 | 7.3:+81726814 | None:intergenic |
| GAAAGGAAGAACACCACTAG+GGG | 0.611858 | 7.3:+81726816 | None:intergenic |
| TTATTAGGAACTAATGGTGG+TGG | 0.613397 | 7.3:+81726529 | None:intergenic |
| ACTAGTGGTGACAATATTGG+TGG | 0.614134 | 7.3:+81726376 | None:intergenic |
| GGACTTAAACCTGGTACCGA+CGG | 0.615702 | 7.3:+81726091 | None:intergenic |
| GACTACACATATTCTCAGCA+GGG | 0.621333 | 7.3:-81726993 | MS.gene056306:CDS |
| GGATTATTAGGAACTAATGG+TGG | 0.626184 | 7.3:+81726526 | None:intergenic |
| GGATTATTAGGGACTAATGG+TGG | 0.630974 | 7.3:+81726235 | None:intergenic |
| GGATTATTAGGGACTAATGG+TGG | 0.630974 | 7.3:+81726595 | None:intergenic |
| ACATTCTTTGTAGAAGTGGG+AGG | 0.631880 | 7.3:+81725992 | None:intergenic |
| GGTGATGATCCTGATGGAGG+TGG | 0.635840 | 7.3:+81726127 | None:intergenic |
| TGAAATGGATTAGGAACAAG+TGG | 0.638457 | 7.3:+81726430 | None:intergenic |
| GGATTATTAGGGACTAATGG+TGG | 0.639754 | 7.3:+81726472 | None:intergenic |
| CCTGGTGGTGATGAAGGTGG+TGG | 0.644332 | 7.3:+81726064 | None:intergenic |
| GGAACAAGTGGTGTACTTGG+TGG | 0.654056 | 7.3:+81726442 | None:intergenic |
| TAGGTGAAGTGATGAAGATG+AGG | 0.654303 | 7.3:+81727032 | None:intergenic |
| GGTGGTGAAGGACTTAAACC+TGG | 0.654328 | 7.3:+81726082 | None:intergenic |
| CCAGGTGGAGGGAATAGTGG+AGG | 0.655409 | 7.3:+81726025 | None:intergenic |
| TTGTCACCACTAATCCCTAG+TGG | 0.656373 | 7.3:-81726739 | MS.gene056306:CDS |
| ACCGACGGAAAAGGAAACAA+TGG | 0.656858 | 7.3:+81726106 | None:intergenic |
| TTGTCACCACTAGTCCCTAG+TGG | 0.661560 | 7.3:-81726367 | MS.gene056306:CDS |
| AAGGAAGAACACCACTAGGG+GGG | 0.663476 | 7.3:+81726818 | None:intergenic |
| GTGCTAAAGGAACTGGTGGG+AGG | 0.667320 | 7.3:+81726794 | None:intergenic |
| AACAATGGTGATGATCCTGA+TGG | 0.671828 | 7.3:+81726121 | None:intergenic |
| AAAGGAAGAACACCACTAGG+GGG | 0.676816 | 7.3:+81726817 | None:intergenic |
| ATTAGTGGTGACAATTCTGG+TGG | 0.683000 | 7.3:+81726748 | None:intergenic |
| TTAGGAATAGTTGGTGTACG+TGG | 0.683015 | 7.3:+81726562 | None:intergenic |
| AATCCTGGTGGTGATGAAGG+TGG | 0.692654 | 7.3:+81726061 | None:intergenic |
| AAAGGAAAAGCCAATCCTGG+TGG | 0.701193 | 7.3:+81726049 | None:intergenic |
| GGAATAGTTGGTGTACGTGG+TGG | 0.708064 | 7.3:+81726565 | None:intergenic |
| CAGGTGCTAAAGGAACTGGT+GGG | 0.724952 | 7.3:+81726791 | None:intergenic |
| AATGGTGATGATCCTGATGG+AGG | 0.729850 | 7.3:+81726124 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTTTAAATTATTAT+CGG | - | chr7.3:81726199-81726218 | MS.gene056306:CDS | 0.0% |
| !!! | TTTTGAATTTTTTGTTGATT+TGG | + | chr7.3:81727640-81727659 | None:intergenic | 15.0% |
| !! | TGTTAAAATATTGCATGAAA+AGG | + | chr7.3:81726273-81726292 | None:intergenic | 20.0% |
| !! | TTAAACTTACATTTGAACTA+CGG | + | chr7.3:81726578-81726597 | None:intergenic | 20.0% |
| !!! | AAAAAAGGTTATTGATTCTT+TGG | - | chr7.3:81727068-81727087 | MS.gene056306:CDS | 20.0% |
| !!! | AATTGTCTTATTTTTTTGCA+AGG | - | chr7.3:81726023-81726042 | MS.gene056306:CDS | 20.0% |
| !!! | ATTGTCTTATTTTTTTGCAA+GGG | - | chr7.3:81726024-81726043 | MS.gene056306:CDS | 20.0% |
| ! | AAAATATTGCATGAAAAGGT+CGG | + | chr7.3:81726269-81726288 | None:intergenic | 25.0% |
| ! | AATATGGAAGTCAACAAAAA+TGG | + | chr7.3:81726358-81726377 | None:intergenic | 25.0% |
| ! | AATATTGGTGTAAGAATTTC+AGG | + | chr7.3:81727201-81727220 | None:intergenic | 25.0% |
| ! | ACAATTAAGCAGTTAAGAAA+TGG | + | chr7.3:81726009-81726028 | None:intergenic | 25.0% |
| ! | TAAAAAATATTCTTGTGTGC+AGG | - | chr7.3:81726718-81726737 | MS.gene056306:CDS | 25.0% |
| ! | TGTTGATCAAAACACAAAAA+AGG | - | chr7.3:81727053-81727072 | MS.gene056306:CDS | 25.0% |
| !!! | AATGGATTATTAGGAACTAA+TGG | + | chr7.3:81727450-81727469 | None:intergenic | 25.0% |
| !!! | GAAAGCTATGTTTTAAAAAC+TGG | + | chr7.3:81726643-81726662 | None:intergenic | 25.0% |
| !!! | GTTTTTAAAACATAGCTTTC+AGG | - | chr7.3:81726643-81726662 | MS.gene056306:CDS | 25.0% |
| !!! | TTTTAAAAACCCTAATGAAC+CGG | - | chr7.3:81726480-81726499 | MS.gene056306:CDS | 25.0% |
| AAACATGTGAAGAGAATCAA+AGG | - | chr7.3:81726859-81726878 | MS.gene056306:CDS | 30.0% | |
| AGAAACATTCTTTGTAGAAG+TGG | + | chr7.3:81727985-81728004 | None:intergenic | 30.0% | |
| AGAGACGATCATGATTTAAT+TGG | + | chr7.3:81726601-81726620 | None:intergenic | 30.0% | |
| ATGGGAAATCATTTCATTTC+AGG | - | chr7.3:81725982-81726001 | MS.gene056306:CDS | 30.0% | |
| CACCTAAAATCAAGAAAACA+AGG | - | chr7.3:81726955-81726974 | MS.gene056306:CDS | 30.0% | |
| GAAACATTCTTTGTAGAAGT+GGG | + | chr7.3:81727984-81728003 | None:intergenic | 30.0% | |
| GGAAGAATTTGATGTAATAG+AGG | + | chr7.3:81727576-81727595 | None:intergenic | 30.0% | |
| TGATGTAATAGAGGAATTGT+TGG | + | chr7.3:81727567-81727586 | None:intergenic | 30.0% | |
| TTTAAAAACCCTAATGAACC+GGG | - | chr7.3:81726481-81726500 | MS.gene056306:CDS | 30.0% | |
| ! | ATTGTTGGATGAAATGGATT+AGG | + | chr7.3:81727552-81727571 | None:intergenic | 30.0% |
| ! | CATAGATTTGGTTGTTTAAG+TGG | + | chr7.3:81727018-81727037 | None:intergenic | 30.0% |
| ! | GGAAAAGAAGGATCAATTTT+TGG | + | chr7.3:81727111-81727130 | None:intergenic | 30.0% |
| !! | AAAGAAGGATCAATTTTTGG+AGG | + | chr7.3:81727108-81727127 | None:intergenic | 30.0% |
| !! | AATGGATTATTAGGGACTAA+TGG | + | chr7.3:81727381-81727400 | None:intergenic | 30.0% |
| !! | GTGGTTGTAATGGATTATTA+GGG | + | chr7.3:81727389-81727408 | None:intergenic | 30.0% |
| !! | TGAAATGGATTAGGAATAGT+TGG | + | chr7.3:81727420-81727439 | None:intergenic | 30.0% |
| !! | TTGACTTGTTTCTTGAATCT+TGG | + | chr7.3:81726790-81726809 | None:intergenic | 30.0% |
| !! | TTTGATCAACACTTGGTTTT+TGG | + | chr7.3:81727044-81727063 | None:intergenic | 30.0% |
| !!! | GGTTTTTGGTTACATAGATT+TGG | + | chr7.3:81727030-81727049 | None:intergenic | 30.0% |
| !!! | GTCCTTGTTTTCTTGATTTT+AGG | + | chr7.3:81726960-81726979 | None:intergenic | 30.0% |
| !!! | TTTGTGTTTTGATCAACACT+TGG | + | chr7.3:81727051-81727070 | None:intergenic | 30.0% |
| AGAGGAATTGTTGGATGAAA+TGG | + | chr7.3:81727558-81727577 | None:intergenic | 35.0% | |
| CAAGTCAAAACAAATGAGCA+TGG | - | chr7.3:81726802-81726821 | MS.gene056306:CDS | 35.0% | |
| CTTCATTAGTCATTCCACTA+GGG | + | chr7.3:81727248-81727267 | None:intergenic | 35.0% | |
| GGATTATTAGGAACTAATGG+TGG | + | chr7.3:81727447-81727466 | None:intergenic | 35.0% | |
| GGGGAGTTATTATGGAAATA+TGG | + | chr7.3:81726374-81726393 | None:intergenic | 35.0% | |
| GTTGAAGTAGAATGCAAAGA+TGG | - | chr7.3:81726748-81726767 | MS.gene056306:CDS | 35.0% | |
| TCTTCATTAGTCATTCCACT+AGG | + | chr7.3:81727249-81727268 | None:intergenic | 35.0% | |
| TTAGGAATTGTTGGTGTACT+TGG | + | chr7.3:81727771-81727790 | None:intergenic | 35.0% | |
| TTATTAGGAACTAATGGTGG+TGG | + | chr7.3:81727444-81727463 | None:intergenic | 35.0% | |
| TTATTAGGGACTAATGGTGT+TGG | + | chr7.3:81727813-81727832 | None:intergenic | 35.0% | |
| TTGGGTGTTAAGTGCTTTAT+AGG | - | chr7.3:81726243-81726262 | MS.gene056306:CDS | 35.0% | |
| ! | CTTGAGATTGAAAGTGTGTT+TGG | - | chr7.3:81726140-81726159 | MS.gene056306:CDS | 35.0% |
| ! | GTAAGAATTTCAGGTGCTAA+AGG | + | chr7.3:81727192-81727211 | None:intergenic | 35.0% |
| ! | TGATGTGTCACTATTGTGTT+GGG | - | chr7.3:81726225-81726244 | MS.gene056306:CDS | 35.0% |
| ! | TTGATGTGTCACTATTGTGT+TGG | - | chr7.3:81726224-81726243 | MS.gene056306:CDS | 35.0% |
| !! | ACTAATGGTGGTGGAAAAAA+TGG | + | chr7.3:81727726-81727745 | None:intergenic | 35.0% |
| !! | ACTAATGTTGGTGGTTGTAA+TGG | + | chr7.3:81727468-81727487 | None:intergenic | 35.0% |
| !! | GAAAAAATGGATTAGGAGGA+AGG | + | chr7.3:81727713-81727732 | None:intergenic | 35.0% |
| !! | GAGGAATGTGAAAAGTATCA+AGG | + | chr7.3:81727338-81727357 | None:intergenic | 35.0% |
| !! | GATGGATTATTAGGGACTAA+TGG | + | chr7.3:81727504-81727523 | None:intergenic | 35.0% |
| !! | GGTGGTTGTAATGGATTATT+AGG | + | chr7.3:81727390-81727409 | None:intergenic | 35.0% |
| !! | GTGGCTGAAATGGATTATTA+GGG | + | chr7.3:81727827-81727846 | None:intergenic | 35.0% |
| !! | GTGGTTGTGATGGATTATTA+GGG | + | chr7.3:81727512-81727531 | None:intergenic | 35.0% |
| !! | TGAAATGGATTAGGAACAAG+TGG | + | chr7.3:81727543-81727562 | None:intergenic | 35.0% |
| !! | TGAAATGGGTTAGGAATTGT+TGG | + | chr7.3:81727780-81727799 | None:intergenic | 35.0% |
| !! | TTAAGAGCTGACTAGTTTAC+TGG | - | chr7.3:81726516-81726535 | MS.gene056306:CDS | 35.0% |
| AATTCACGGGGGAGTTATTA+TGG | + | chr7.3:81726382-81726401 | None:intergenic | 40.0% | |
| ACATGTTTGCTCACTGAGAA+TGG | + | chr7.3:81726847-81726866 | None:intergenic | 40.0% | |
| ACATTCTTTGTAGAAGTGGG+AGG | + | chr7.3:81727981-81728000 | None:intergenic | 40.0% | |
| ACTAGTGGTGACAATATTGG+TGG | + | chr7.3:81727597-81727616 | None:intergenic | 40.0% | |
| ATTAGTGGTGACAATTCTGG+TGG | + | chr7.3:81727225-81727244 | None:intergenic | 40.0% | |
| CAATGAAAAAGCAAGCCTAG+CGG | + | chr7.3:81726405-81726424 | None:intergenic | 40.0% | |
| GACAATTCTGGTGGCAATAT+TGG | + | chr7.3:81727216-81727235 | None:intergenic | 40.0% | |
| GACTACACATATTCTCAGCA+GGG | - | chr7.3:81726977-81726996 | MS.gene056306:CDS | 40.0% | |
| GAGGAAGGTTAAAGGAATCA+AGG | + | chr7.3:81727698-81727717 | None:intergenic | 40.0% | |
| GCTGAGGCTATAGAACAAAA+TGG | + | chr7.3:81726916-81726935 | None:intergenic | 40.0% | |
| GGAAGTCAACAAAAATGGCT+TGG | + | chr7.3:81726353-81726372 | None:intergenic | 40.0% | |
| GGATTATTAGGGACTAATGG+TGG | + | chr7.3:81727378-81727397 | None:intergenic | 40.0% | |
| TAGGTGAAGTGATGAAGATG+AGG | + | chr7.3:81726941-81726960 | None:intergenic | 40.0% | |
| TATTAGGGACTAATGGTGGT+GGG | + | chr7.3:81727374-81727393 | None:intergenic | 40.0% | |
| TCTTAATTGTTTCAACCGCC+CGG | + | chr7.3:81726502-81726521 | None:intergenic | 40.0% | |
| TTAGGAACAAGTGGTGTACT+TGG | + | chr7.3:81727534-81727553 | None:intergenic | 40.0% | |
| TTATTAGGGACTAATGGTGG+TGG | + | chr7.3:81727375-81727394 | None:intergenic | 40.0% | |
| ! | AACAATGGTGATGATCCTGA+TGG | + | chr7.3:81727852-81727871 | None:intergenic | 40.0% |
| ! | ACCATTGTTTCCTTTTCCGT+CGG | - | chr7.3:81727863-81727882 | MS.gene056306:intron | 40.0% |
| ! | AGTCAACAAAAATGGCTTGG+TGG | + | chr7.3:81726350-81726369 | None:intergenic | 40.0% |
| ! | ATTTCAGGTGCTAAAGGAAC+TGG | + | chr7.3:81727186-81727205 | None:intergenic | 40.0% |
| ! | TGGATTAGGAGGAAGGTTAA+AGG | + | chr7.3:81727706-81727725 | None:intergenic | 40.0% |
| ! | TTAGGAATAGTTGGTGTACG+TGG | + | chr7.3:81727411-81727430 | None:intergenic | 40.0% |
| !! | ACTAATGGTGGTGGGAAAAA+TGG | + | chr7.3:81727366-81727385 | None:intergenic | 40.0% |
| !! | ACTAATGGTGGTGGTTGAAA+TGG | + | chr7.3:81727435-81727454 | None:intergenic | 40.0% |
| !! | GGTGGAAAAAATGGATTAGG+AGG | + | chr7.3:81727717-81727736 | None:intergenic | 40.0% |
| !! | GGTGGCTGAAATGGATTATT+AGG | + | chr7.3:81727828-81727847 | None:intergenic | 40.0% |
| !! | GGTGGTGGAAAAAATGGATT+AGG | + | chr7.3:81727720-81727739 | None:intergenic | 40.0% |
| !! | GGTGGTTGTGATGGATTATT+AGG | + | chr7.3:81727513-81727532 | None:intergenic | 40.0% |
| !! | TGTTGTTTCGCTGTGCATTT+GGG | - | chr7.3:81726431-81726450 | MS.gene056306:CDS | 40.0% |
| !! | TTGGAGTTGGTGGTTGAAAT+GGG | + | chr7.3:81727794-81727813 | None:intergenic | 40.0% |
| !! | TTGTTGTTTCGCTGTGCATT+TGG | - | chr7.3:81726430-81726449 | MS.gene056306:CDS | 40.0% |
| !!! | TAGGCTTGCTTTTTCATTGG+TGG | - | chr7.3:81726406-81726425 | MS.gene056306:CDS | 40.0% |
| AAAAACCCTAATGAACCGGG+CGG | - | chr7.3:81726484-81726503 | MS.gene056306:CDS | 45.0% | |
| AAAGGAAAAGCCAATCCTGG+TGG | + | chr7.3:81727924-81727943 | None:intergenic | 45.0% | |
| AAAGGAAGAACACCACTAGG+GGG | + | chr7.3:81727156-81727175 | None:intergenic | 45.0% | |
| AACTGGAGCGAAGATCGAAT+AGG | + | chr7.3:81726626-81726645 | None:intergenic | 45.0% | |
| ACCGACGGAAAAGGAAACAA+TGG | + | chr7.3:81727867-81727886 | None:intergenic | 45.0% | |
| AGGAAAGGAAGAACACCACT+AGG | + | chr7.3:81727159-81727178 | None:intergenic | 45.0% | |
| GAAAGGAAGAACACCACTAG+GGG | + | chr7.3:81727157-81727176 | None:intergenic | 45.0% | |
| GGAAAAGGAAAAGCCAATCC+TGG | + | chr7.3:81727927-81727946 | None:intergenic | 45.0% | |
| GGAAAGGAAGAACACCACTA+GGG | + | chr7.3:81727158-81727177 | None:intergenic | 45.0% | |
| GGAATTGTTGGTGTACTTGG+TGG | + | chr7.3:81727768-81727787 | None:intergenic | 45.0% | |
| GGACTACACATATTCTCAGC+AGG | - | chr7.3:81726976-81726995 | MS.gene056306:CDS | 45.0% | |
| GGATTAGGGACTAATGTTGG+TGG | + | chr7.3:81727477-81727496 | None:intergenic | 45.0% | |
| GTCATTCCACTAGGGATTAG+TGG | + | chr7.3:81727240-81727259 | None:intergenic | 45.0% | |
| TGCTCACTGAGAATGGAAGT+TGG | + | chr7.3:81726840-81726859 | None:intergenic | 45.0% | |
| TTGTCACCACTAATCCCTAG+TGG | - | chr7.3:81727231-81727250 | MS.gene056306:CDS | 45.0% | |
| ! | AATGGTGATGATCCTGATGG+AGG | + | chr7.3:81727849-81727868 | None:intergenic | 45.0% |
| ! | ACTAATGGTGTTGGAGTTGG+TGG | + | chr7.3:81727804-81727823 | None:intergenic | 45.0% |
| ! | GGGACTAGTGGTGACAATAT+TGG | + | chr7.3:81727600-81727619 | None:intergenic | 45.0% |
| ! | GGGATTAGTGGTGACAATTC+TGG | + | chr7.3:81727228-81727247 | None:intergenic | 45.0% |
| ! | GGTGGTGGTTGAAATGGATT+AGG | + | chr7.3:81727429-81727448 | None:intergenic | 45.0% |
| ! | GGTGTACTTGGTGGTTGTAA+TGG | + | chr7.3:81727759-81727778 | None:intergenic | 45.0% |
| !! | GAGCTGACTAGTTTACTGGT+TGG | - | chr7.3:81726520-81726539 | MS.gene056306:CDS | 45.0% |
| !! | GGACTAATGGTGGTGGATTA+GGG | + | chr7.3:81727491-81727510 | None:intergenic | 45.0% |
| !! | GGTGGATTAGGGACTAATGT+TGG | + | chr7.3:81727480-81727499 | None:intergenic | 45.0% |
| !! | GGTGGGAAAAATGGATTAGG+AGG | + | chr7.3:81727357-81727376 | None:intergenic | 45.0% |
| !! | GGTGGTGGGAAAAATGGATT+AGG | + | chr7.3:81727360-81727379 | None:intergenic | 45.0% |
| !! | GTTGGAGTTGGTGGTTGAAA+TGG | + | chr7.3:81727795-81727814 | None:intergenic | 45.0% |
| !! | GTTGGTGGTTGAAATGGGTT+AGG | + | chr7.3:81727789-81727808 | None:intergenic | 45.0% |
| !! | TGGAACTAGCCTTTCCACTA+GGG | + | chr7.3:81727620-81727639 | None:intergenic | 45.0% |
| !! | TTGGAACTAGCCTTTCCACT+AGG | + | chr7.3:81727621-81727640 | None:intergenic | 45.0% |
| !!! | CGCTAGGCTTGCTTTTTCAT+TGG | - | chr7.3:81726403-81726422 | MS.gene056306:CDS | 45.0% |
| AAAGGAACTGGTGGGAGGAA+AGG | + | chr7.3:81727174-81727193 | None:intergenic | 50.0% | |
| AAGGAAGAACACCACTAGGG+GGG | + | chr7.3:81727155-81727174 | None:intergenic | 50.0% | |
| ACCACTAGTCCCTAGTGGAA+AGG | - | chr7.3:81727608-81727627 | MS.gene056306:intron | 50.0% | |
| ACCTTCATCACCACCAGGAT+TGG | - | chr7.3:81727911-81727930 | MS.gene056306:intron | 50.0% | |
| AGCAAGCCTAGCGGAATTCA+CGG | + | chr7.3:81726396-81726415 | None:intergenic | 50.0% | |
| CAGGTGCTAAAGGAACTGGT+GGG | + | chr7.3:81727182-81727201 | None:intergenic | 50.0% | |
| CGCTGTGCATTTGGGAAAAC+TGG | - | chr7.3:81726439-81726458 | MS.gene056306:CDS | 50.0% | |
| GGAACAAGTGGTGTACTTGG+TGG | + | chr7.3:81727531-81727550 | None:intergenic | 50.0% | |
| GGGGGTTTGGATCTTGAAGT+GGG | + | chr7.3:81727137-81727156 | None:intergenic | 50.0% | |
| GGGGTTTGGATCTTGAAGTG+GGG | + | chr7.3:81727136-81727155 | None:intergenic | 50.0% | |
| GGGTTTGGATCTTGAAGTGG+GGG | + | chr7.3:81727135-81727154 | None:intergenic | 50.0% | |
| GGTGGTGAAGGACTTAAACC+TGG | + | chr7.3:81727891-81727910 | None:intergenic | 50.0% | |
| GGTGTACGTGGTGGTTGTAA+TGG | + | chr7.3:81727399-81727418 | None:intergenic | 50.0% | |
| TCAGGTGCTAAAGGAACTGG+TGG | + | chr7.3:81727183-81727202 | None:intergenic | 50.0% | |
| TGAAGTGGGGGTGGAAAAGA+AGG | + | chr7.3:81727123-81727142 | None:intergenic | 50.0% | |
| TGATGAAGATGAGGCTGCTG+AGG | + | chr7.3:81726932-81726951 | None:intergenic | 50.0% | |
| TTCAACCGCCCGGTTCATTA+GGG | + | chr7.3:81726492-81726511 | None:intergenic | 50.0% | |
| TTGTCACCACTAGTCCCTAG+TGG | - | chr7.3:81727603-81727622 | MS.gene056306:intron | 50.0% | |
| TTTCAACCGCCCGGTTCATT+AGG | + | chr7.3:81726493-81726512 | None:intergenic | 50.0% | |
| TTTGGATCTTGAAGTGGGGG+TGG | + | chr7.3:81727132-81727151 | None:intergenic | 50.0% | |
| ! | AATCCTGGTGGTGATGAAGG+TGG | + | chr7.3:81727912-81727931 | None:intergenic | 50.0% |
| ! | GGAATAGTTGGTGTACGTGG+TGG | + | chr7.3:81727408-81727427 | None:intergenic | 50.0% |
| ! | GGACTTAAACCTGGTACCGA+CGG | + | chr7.3:81727882-81727901 | None:intergenic | 50.0% |
| ! | GGAGGGAATAGTGGAGGAAA+AGG | + | chr7.3:81727942-81727961 | None:intergenic | 50.0% |
| ! | GGGACTAATGGTGTTGGAGT+TGG | + | chr7.3:81727807-81727826 | None:intergenic | 50.0% |
| ! | GGTGTACTTGGTGGTTGTGA+TGG | + | chr7.3:81727522-81727541 | None:intergenic | 50.0% |
| ! | TTTCCTTTTCCGTCGGTACC+AGG | - | chr7.3:81727870-81727889 | MS.gene056306:intron | 50.0% |
| !! | AAACCTGGTACCGACGGAAA+AGG | + | chr7.3:81727876-81727895 | None:intergenic | 50.0% |
| !! | GGGACTAATGGTGGTGGATT+AGG | + | chr7.3:81727492-81727511 | None:intergenic | 50.0% |
| AAGCCTAGCGGAATTCACGG+GGG | + | chr7.3:81726393-81726412 | None:intergenic | 55.0% | |
| AGAACACCACTAGGGGGGTT+TGG | + | chr7.3:81727150-81727169 | None:intergenic | 55.0% | |
| CAAGATCCAAACCCCCCTAG+TGG | - | chr7.3:81727141-81727160 | MS.gene056306:CDS | 55.0% | |
| CAAGCCTAGCGGAATTCACG+GGG | + | chr7.3:81726394-81726413 | None:intergenic | 55.0% | |
| CCATTTCAGCCACCTCCATC+AGG | - | chr7.3:81727834-81727853 | MS.gene056306:intron | 55.0% | |
| CCTGATGGAGGTGGCTGAAA+TGG | + | chr7.3:81727837-81727856 | None:intergenic | 55.0% | |
| CTCCACTATTCCCTCCACCT+GGG | - | chr7.3:81727946-81727965 | MS.gene056306:intron | 55.0% | |
| GCAAGCCTAGCGGAATTCAC+GGG | + | chr7.3:81726395-81726414 | None:intergenic | 55.0% | |
| GCCTTTCCACTAGGGACTAG+TGG | + | chr7.3:81727612-81727631 | None:intergenic | 55.0% | |
| GGGGGGTTTGGATCTTGAAG+TGG | + | chr7.3:81727138-81727157 | None:intergenic | 55.0% | |
| GGTGATGATCCTGATGGAGG+TGG | + | chr7.3:81727846-81727865 | None:intergenic | 55.0% | |
| GTGCTAAAGGAACTGGTGGG+AGG | + | chr7.3:81727179-81727198 | None:intergenic | 55.0% | |
| ! | GCCAATCCTGGTGGTGATGA+AGG | + | chr7.3:81727915-81727934 | None:intergenic | 55.0% |
| ! | GGTGATGAAGGTGGTGGTGA+AGG | + | chr7.3:81727903-81727922 | None:intergenic | 55.0% |
| ACTCCCCCGTGAATTCCGCT+AGG | - | chr7.3:81726387-81726406 | MS.gene056306:CDS | 60.0% | |
| CCACCACCTTCATCACCACC+AGG | - | chr7.3:81727906-81727925 | MS.gene056306:intron | 60.0% | |
| CCAGGTGGAGGGAATAGTGG+AGG | + | chr7.3:81727948-81727967 | None:intergenic | 60.0% | |
| CCTCCACTATTCCCTCCACC+TGG | - | chr7.3:81727945-81727964 | MS.gene056306:intron | 60.0% | |
| CTATTCCCTCCACCTGGGAG+TGG | - | chr7.3:81727951-81727970 | MS.gene056306:intron | 60.0% | |
| CTCCCAGGTGGAGGGAATAG+TGG | + | chr7.3:81727951-81727970 | None:intergenic | 60.0% | |
| ! | CCTGGTGGTGATGAAGGTGG+TGG | + | chr7.3:81727909-81727928 | None:intergenic | 60.0% |
| ! | GTGTGCCACTCCCAGGTGGA+GGG | + | chr7.3:81727959-81727978 | None:intergenic | 65.0% |
| ! | GGAGGTGTGCCACTCCCAGG+TGG | + | chr7.3:81727963-81727982 | None:intergenic | 70.0% |
| ! | GGTGTGCCACTCCCAGGTGG+AGG | + | chr7.3:81727960-81727979 | None:intergenic | 70.0% |
| ! | GTGGGAGGTGTGCCACTCCC+AGG | + | chr7.3:81727966-81727985 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 81725982 | 81728010 | 81725982 | ID=MS.gene056306 |
| chr7.3 | mRNA | 81725982 | 81728010 | 81725982 | ID=MS.gene056306.t1;Parent=MS.gene056306 |
| chr7.3 | exon | 81727989 | 81728010 | 81727989 | ID=MS.gene056306.t1.exon1;Parent=MS.gene056306.t1 |
| chr7.3 | CDS | 81727989 | 81728010 | 81727989 | ID=cds.MS.gene056306.t1;Parent=MS.gene056306.t1 |
| chr7.3 | exon | 81725982 | 81727252 | 81725982 | ID=MS.gene056306.t1.exon2;Parent=MS.gene056306.t1 |
| chr7.3 | CDS | 81725982 | 81727252 | 81725982 | ID=cds.MS.gene056306.t1;Parent=MS.gene056306.t1 |
| Gene Sequence |
| Protein sequence |
