Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44750.t1 | XP_003621585.1 | 98.9 | 438 | 5 | 0 | 1 | 438 | 1 | 438 | 2.20E-250 | 874.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44750.t1 | Q9LFV5 | 82.0 | 378 | 67 | 1 | 61 | 437 | 70 | 447 | 2.3e-187 | 656.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44750.t1 | A2Q633 | 98.9 | 438 | 5 | 0 | 1 | 438 | 1 | 438 | 1.6e-250 | 874.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058427 | MS.gene44750 | 0.803701 | 3.07E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44750.t1 | MTR_7g017400 | 98.858 | 438 | 5 | 0 | 1 | 438 | 1 | 438 | 0.0 | 900 |
| MS.gene44750.t1 | MTR_3g085160 | 31.471 | 340 | 209 | 13 | 90 | 416 | 42 | 370 | 2.28e-35 | 135 |
| MS.gene44750.t1 | MTR_3g085160 | 31.471 | 340 | 209 | 13 | 90 | 416 | 111 | 439 | 5.71e-35 | 135 |
| MS.gene44750.t1 | MTR_8g028250 | 31.014 | 345 | 199 | 14 | 97 | 413 | 43 | 376 | 7.30e-28 | 114 |
| MS.gene44750.t1 | MTR_4g094748 | 27.778 | 378 | 241 | 10 | 90 | 437 | 55 | 430 | 6.96e-26 | 109 |
| MS.gene44750.t1 | MTR_8g028220 | 27.824 | 363 | 219 | 15 | 72 | 413 | 31 | 371 | 8.57e-23 | 100 |
| MS.gene44750.t1 | MTR_1g033280 | 30.169 | 295 | 174 | 11 | 90 | 366 | 24 | 304 | 8.60e-20 | 90.9 |
| MS.gene44750.t1 | MTR_1g033310 | 26.176 | 340 | 215 | 14 | 83 | 411 | 6 | 320 | 7.80e-18 | 84.7 |
| MS.gene44750.t1 | MTR_1g018140 | 25.210 | 357 | 237 | 9 | 82 | 414 | 5 | 355 | 5.37e-17 | 82.8 |
| MS.gene44750.t1 | MTR_4g011090 | 20.833 | 360 | 239 | 14 | 94 | 419 | 1 | 348 | 2.22e-11 | 65.5 |
| MS.gene44750.t1 | MTR_2g033410 | 21.711 | 304 | 205 | 8 | 96 | 375 | 7 | 301 | 2.72e-11 | 65.1 |
| MS.gene44750.t1 | MTR_1g014700 | 22.762 | 391 | 242 | 13 | 98 | 437 | 22 | 403 | 2.77e-11 | 65.5 |
| MS.gene44750.t1 | MTR_3g007330 | 27.219 | 169 | 112 | 6 | 70 | 231 | 18 | 182 | 4.64e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44750.t1 | AT5G15710 | 76.871 | 441 | 94 | 3 | 1 | 437 | 11 | 447 | 0.0 | 698 |
| MS.gene44750.t1 | AT5G15710 | 76.871 | 441 | 94 | 3 | 1 | 437 | 11 | 447 | 0.0 | 698 |
| MS.gene44750.t1 | AT1G30950 | 28.612 | 353 | 222 | 9 | 90 | 414 | 42 | 392 | 2.34e-31 | 125 |
| MS.gene44750.t1 | AT1G27340 | 29.210 | 291 | 183 | 10 | 89 | 367 | 111 | 390 | 1.08e-29 | 120 |
| MS.gene44750.t1 | AT3G61590 | 28.099 | 363 | 196 | 19 | 96 | 413 | 41 | 383 | 4.72e-22 | 98.2 |
| MS.gene44750.t1 | AT3G61590 | 28.099 | 363 | 196 | 19 | 96 | 413 | 49 | 391 | 5.95e-22 | 97.8 |
| MS.gene44750.t1 | AT3G61590 | 28.099 | 363 | 196 | 19 | 96 | 413 | 49 | 391 | 5.95e-22 | 97.8 |
| MS.gene44750.t1 | AT3G61590 | 28.099 | 363 | 196 | 19 | 96 | 413 | 77 | 419 | 1.19e-21 | 97.4 |
| MS.gene44750.t1 | AT5G43190 | 27.401 | 354 | 222 | 13 | 83 | 414 | 36 | 376 | 3.01e-14 | 74.7 |
| MS.gene44750.t1 | AT5G49610 | 22.654 | 309 | 206 | 10 | 90 | 375 | 1 | 299 | 9.18e-11 | 63.5 |
Find 98 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGGGAAATCTTCTGAATT+AGG | 0.184813 | 7.4:+82749548 | MS.gene44750:CDS |
| CTCTGCAGAGTATAAGAATT+TGG | 0.204348 | 7.4:+82750569 | MS.gene44750:CDS |
| ATCTGGCTGGTTGGGTCATC+TGG | 0.265263 | 7.4:+82750085 | MS.gene44750:CDS |
| CTTGATGGTTACTTGGTTGC+CGG | 0.321807 | 7.4:+82750499 | MS.gene44750:CDS |
| AGATGGCGTATTGTGATTCT+AGG | 0.327846 | 7.4:+82750380 | MS.gene44750:CDS |
| GAGATGGAATTCATTGCTTC+AGG | 0.336339 | 7.4:+82749907 | MS.gene44750:CDS |
| TCAACAAAGGCAACTGATAA+TGG | 0.351016 | 7.4:+82750210 | MS.gene44750:CDS |
| GCTGAGAGATTTGAATGCTT+TGG | 0.354339 | 7.4:+82750673 | MS.gene44750:CDS |
| TACTCTGCAGAGTGCTATAA+AGG | 0.356458 | 7.4:-82750558 | None:intergenic |
| GCTTCTCCTCCAAGGGGAAA+TGG | 0.361590 | 7.4:+82749641 | MS.gene44750:CDS |
| AAATCGTTGGGAACATATTC+CGG | 0.373595 | 7.4:+82750456 | MS.gene44750:CDS |
| ATGACTCAAAGGAAGATAAA+TGG | 0.389639 | 7.4:+82750314 | MS.gene44750:CDS |
| TAGAGAAAATGGATTGTATA+GGG | 0.393610 | 7.4:+82749531 | None:intergenic |
| ATTGGGCGATCTGGCTGGTT+GGG | 0.397143 | 7.4:+82750077 | MS.gene44750:CDS |
| CTTGATCCATTTCCCCTTGG+AGG | 0.397956 | 7.4:-82749647 | None:intergenic |
| GTCGTTACTTGATGGTTACT+TGG | 0.399584 | 7.4:+82750492 | MS.gene44750:CDS |
| CATTGGGCGATCTGGCTGGT+TGG | 0.406460 | 7.4:+82750076 | MS.gene44750:CDS |
| TTGGAAACCCTTTCGCCGCT+TGG | 0.408910 | 7.4:+82750409 | MS.gene44750:CDS |
| TGTTGATTAAAATGCATACT+TGG | 0.412063 | 7.4:-82750193 | None:intergenic |
| TCTGCAGAGTATAAGAATTT+GGG | 0.413504 | 7.4:+82750570 | MS.gene44750:CDS |
| AACTGTAAACAGAACATTGC+GGG | 0.425399 | 7.4:-82750009 | None:intergenic |
| TTAGAGAAAATGGATTGTAT+AGG | 0.428981 | 7.4:+82749530 | None:intergenic |
| TAGGGAAATCTTCTGAATTA+GGG | 0.432644 | 7.4:+82749549 | MS.gene44750:CDS |
| GAGTATAAGAATTTGGGAAT+TGG | 0.434419 | 7.4:+82750576 | MS.gene44750:CDS |
| GAAGAAACACATGCTACATT+TGG | 0.435966 | 7.4:+82749758 | MS.gene44750:CDS |
| TTCAGATGGAGGATAACATA+TGG | 0.436237 | 7.4:+82749801 | MS.gene44750:CDS |
| TTGTGATTCTAGGTTGTACT+TGG | 0.439967 | 7.4:+82750390 | MS.gene44750:CDS |
| TTCCCGCGGTCGTTACTTGA+TGG | 0.443885 | 7.4:+82750484 | MS.gene44750:CDS |
| GTCACTACATATATCATTAG+TGG | 0.448781 | 7.4:-82750269 | None:intergenic |
| GCCGCATTGGGCGATCTGGC+TGG | 0.459159 | 7.4:+82750072 | MS.gene44750:CDS |
| GTAATCCCCTCACTCAAACT+TGG | 0.462294 | 7.4:+82750161 | MS.gene44750:CDS |
| TTCCTTGATCCATTTCCCCT+TGG | 0.464201 | 7.4:-82749650 | None:intergenic |
| CTAGTCCAATGGGTCGAGTC+GGG | 0.468487 | 7.4:+82749675 | MS.gene44750:CDS |
| CACGAGTCCTTCAAGGCAAA+AGG | 0.475886 | 7.4:+82749706 | MS.gene44750:CDS |
| GTTTCTTCATCTAAACCCCT+TGG | 0.480699 | 7.4:-82749743 | None:intergenic |
| ACAGTTTGCCTCTTAAAACT+TGG | 0.492998 | 7.4:+82750026 | MS.gene44750:CDS |
| TTCGTTCGGTTTGTAAGAGA+TGG | 0.495825 | 7.4:+82749891 | MS.gene44750:CDS |
| AAATCTTCTGAATTAGGGTC+TGG | 0.498237 | 7.4:+82749554 | MS.gene44750:CDS |
| CAATCTCTGCTCTTCGAAGA+TGG | 0.499866 | 7.4:+82750363 | MS.gene44750:CDS |
| CAAATAGAAGGCCCTTCCCT+TGG | 0.501474 | 7.4:-82750729 | None:intergenic |
| CGAGGAACACGAGTCCTTCA+AGG | 0.503415 | 7.4:+82749699 | MS.gene44750:CDS |
| CATTCGAGTGTGCCATCACA+TGG | 0.505681 | 7.4:+82749950 | MS.gene44750:CDS |
| TCGTTCATTATTGAGACTGT+CGG | 0.510271 | 7.4:+82750651 | MS.gene44750:CDS |
| CATCAAACCAAGCGGCGAAA+GGG | 0.512136 | 7.4:-82750416 | None:intergenic |
| CAATGGGTCGAGTCGGGTCG+AGG | 0.512891 | 7.4:+82749681 | MS.gene44750:CDS |
| CAGACTAGATATAAATCGTT+GGG | 0.512905 | 7.4:+82750444 | MS.gene44750:CDS |
| AAGATCTGGTCTTGGATTGG+TGG | 0.513036 | 7.4:+82750763 | MS.gene44750:CDS |
| ATCTCATGCAACAAATCCTC+AGG | 0.513038 | 7.4:-82749833 | None:intergenic |
| TCAAGGAATACTAGTCCAAT+GGG | 0.522157 | 7.4:+82749665 | MS.gene44750:CDS |
| TCATCAAACCAAGCGGCGAA+AGG | 0.525618 | 7.4:-82750417 | None:intergenic |
| CTCGACCCGACTCGACCCAT+TGG | 0.526757 | 7.4:-82749680 | None:intergenic |
| CTCCAAGGGGAAATGGATCA+AGG | 0.529388 | 7.4:+82749648 | MS.gene44750:CDS |
| CATCTTCGAAGAGCAGAGAT+TGG | 0.531356 | 7.4:-82750362 | None:intergenic |
| TTCCTCCAAGTTTGAGTGAG+GGG | 0.534252 | 7.4:-82750166 | None:intergenic |
| TTAGGGTCTGGTGTTAGTAT+TGG | 0.537645 | 7.4:+82749566 | MS.gene44750:CDS |
| AACGACCGCGGGAACTTAGC+CGG | 0.537699 | 7.4:-82750475 | None:intergenic |
| TGGCTGGTTGGGTCATCTGG+TGG | 0.544137 | 7.4:+82750088 | MS.gene44750:CDS |
| ATCCCCTCACTCAAACTTGG+AGG | 0.546705 | 7.4:+82750164 | MS.gene44750:CDS |
| GATAATGGTTGTTGATCGAT+CGG | 0.546867 | 7.4:+82750225 | MS.gene44750:CDS |
| AAGCTTGTTTCTATGAGCCA+AGG | 0.550821 | 7.4:+82750812 | MS.gene44750:CDS |
| TCAGATGGAGGATAACATAT+GGG | 0.551921 | 7.4:+82749802 | MS.gene44750:CDS |
| GTCTGTCCATCAGACTATGC+CGG | 0.552490 | 7.4:+82750336 | MS.gene44750:CDS |
| GTATACAAGCTTCTCCTCCA+AGG | 0.552869 | 7.4:+82749633 | MS.gene44750:CDS |
| AGATCTGGTCTTGGATTGGT+GGG | 0.553005 | 7.4:+82750764 | MS.gene44750:CDS |
| ACAGACTAGATATAAATCGT+TGG | 0.556572 | 7.4:+82750443 | MS.gene44750:CDS |
| TGGAAGCCGGCATAGTCTGA+TGG | 0.561952 | 7.4:-82750342 | None:intergenic |
| ATCAAGGAATACTAGTCCAA+TGG | 0.562043 | 7.4:+82749664 | MS.gene44750:CDS |
| ACTAGTCCAATGGGTCGAGT+CGG | 0.562994 | 7.4:+82749674 | MS.gene44750:CDS |
| TTTGAGTCATAAATTTCAGT+CGG | 0.563889 | 7.4:-82750301 | None:intergenic |
| TGCTTCACATCTTATAACCA+AGG | 0.565654 | 7.4:+82750712 | MS.gene44750:CDS |
| TATACAAGCTTCTCCTCCAA+GGG | 0.568208 | 7.4:+82749634 | MS.gene44750:CDS |
| AATAATGAACGAAAATACCT+TGG | 0.570508 | 7.4:-82750640 | None:intergenic |
| GACTGAAATTTATGACTCAA+AGG | 0.574397 | 7.4:+82750303 | MS.gene44750:CDS |
| AATGAACGAAAATACCTTGG+CGG | 0.574866 | 7.4:-82750637 | None:intergenic |
| GGTTGTTAAGACTAAACCAA+GGG | 0.578010 | 7.4:+82749727 | MS.gene44750:CDS |
| CACATCTTATAACCAAGGGA+AGG | 0.586750 | 7.4:+82750717 | MS.gene44750:CDS |
| ATTTCCTCCAAGTTTGAGTG+AGG | 0.595703 | 7.4:-82750168 | None:intergenic |
| TAGATAGAAGCATCAAACCT+TGG | 0.596404 | 7.4:-82750829 | None:intergenic |
| AACCATCAAGTAACGACCGC+GGG | 0.601882 | 7.4:-82750486 | None:intergenic |
| GCTTCACATCTTATAACCAA+GGG | 0.605187 | 7.4:+82750713 | MS.gene44750:CDS |
| AGTTCATGCTGATATTCAGA+TGG | 0.607798 | 7.4:+82749787 | MS.gene44750:CDS |
| TTTCCTCCAAGTTTGAGTGA+GGG | 0.609371 | 7.4:-82750167 | None:intergenic |
| GAAGAGCAGAGATTGGAAGC+CGG | 0.628698 | 7.4:-82750355 | None:intergenic |
| AGAACACAAGGTCCATGTGA+TGG | 0.635856 | 7.4:-82749962 | None:intergenic |
| TCATGCTGATATTCAGATGG+AGG | 0.638526 | 7.4:+82749790 | MS.gene44750:CDS |
| ACATCTTATAACCAAGGGAA+GGG | 0.641003 | 7.4:+82750718 | MS.gene44750:CDS |
| TGGTTGCCGGTACTCAGAAG+CGG | 0.650052 | 7.4:+82750512 | MS.gene44750:CDS |
| AGATCAGTAGGATGCCGCCA+AGG | 0.663629 | 7.4:+82750623 | MS.gene44750:CDS |
| TTACAGAAACTAAGAACACA+AGG | 0.666240 | 7.4:-82749974 | None:intergenic |
| CATATGGGCTATGTTGCCTG+AGG | 0.667267 | 7.4:+82749817 | MS.gene44750:CDS |
| ACCAGCCAGATCGCCCAATG+CGG | 0.679100 | 7.4:-82750073 | None:intergenic |
| AGGTTGTTAAGACTAAACCA+AGG | 0.680360 | 7.4:+82749726 | MS.gene44750:CDS |
| CTGTACATCATCAAACCAAG+CGG | 0.696757 | 7.4:-82750424 | None:intergenic |
| ATATTCCGGCTAAGTTCCCG+CGG | 0.702835 | 7.4:+82750470 | MS.gene44750:CDS |
| GTTGTTAAGACTAAACCAAG+GGG | 0.704700 | 7.4:+82749728 | MS.gene44750:CDS |
| ATACAAGCTTCTCCTCCAAG+GGG | 0.713925 | 7.4:+82749635 | MS.gene44750:CDS |
| TAACCATCAAGTAACGACCG+CGG | 0.740683 | 7.4:-82750487 | None:intergenic |
| AAACTGTAAACAGAACATTG+CGG | 0.767534 | 7.4:-82750010 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATAATGAACGAAAATACCT+TGG | - | chr7.4:82750643-82750662 | None:intergenic | 25.0% |
| ! | TTTGAGTCATAAATTTCAGT+CGG | - | chr7.4:82750304-82750323 | None:intergenic | 25.0% |
| !! | TGTTGATTAAAATGCATACT+TGG | - | chr7.4:82750196-82750215 | None:intergenic | 25.0% |
| !! | TTTTATCGACATCAAATAGA+AGG | - | chr7.4:82750744-82750763 | None:intergenic | 25.0% |
| !!! | ATTCTATACCAAGTTTTAAG+AGG | - | chr7.4:82750037-82750056 | None:intergenic | 25.0% |
| !!! | GTATGCATTTTAATCAACAA+AGG | + | chr7.4:82750197-82750216 | MS.gene44750:CDS | 25.0% |
| AAACTGTAAACAGAACATTG+CGG | - | chr7.4:82750013-82750032 | None:intergenic | 30.0% | |
| ACAGACTAGATATAAATCGT+TGG | + | chr7.4:82750443-82750462 | MS.gene44750:CDS | 30.0% | |
| ATAGGGAAATCTTCTGAATT+AGG | + | chr7.4:82749548-82749567 | MS.gene44750:CDS | 30.0% | |
| ATGACTCAAAGGAAGATAAA+TGG | + | chr7.4:82750314-82750333 | MS.gene44750:CDS | 30.0% | |
| CAGACTAGATATAAATCGTT+GGG | + | chr7.4:82750444-82750463 | MS.gene44750:CDS | 30.0% | |
| GACTGAAATTTATGACTCAA+AGG | + | chr7.4:82750303-82750322 | MS.gene44750:CDS | 30.0% | |
| GAGTATAAGAATTTGGGAAT+TGG | + | chr7.4:82750576-82750595 | MS.gene44750:CDS | 30.0% | |
| GTCACTACATATATCATTAG+TGG | - | chr7.4:82750272-82750291 | None:intergenic | 30.0% | |
| TAGGGAAATCTTCTGAATTA+GGG | + | chr7.4:82749549-82749568 | MS.gene44750:CDS | 30.0% | |
| TCTGCAGAGTATAAGAATTT+GGG | + | chr7.4:82750570-82750589 | MS.gene44750:CDS | 30.0% | |
| TTACAGAAACTAAGAACACA+AGG | - | chr7.4:82749977-82749996 | None:intergenic | 30.0% | |
| TTGATGTCGATAAAAAGATC+TGG | + | chr7.4:82750749-82750768 | MS.gene44750:CDS | 30.0% | |
| ! | GCAGTAGAAAATGTAGTTTT+AGG | + | chr7.4:82749593-82749612 | MS.gene44750:CDS | 30.0% |
| !!! | GTAGAAAATGTAGTTTTAGG+TGG | + | chr7.4:82749596-82749615 | MS.gene44750:CDS | 30.0% |
| AAATCGTTGGGAACATATTC+CGG | + | chr7.4:82750456-82750475 | MS.gene44750:CDS | 35.0% | |
| AAATCTTCTGAATTAGGGTC+TGG | + | chr7.4:82749554-82749573 | MS.gene44750:CDS | 35.0% | |
| AACTGTAAACAGAACATTGC+GGG | - | chr7.4:82750012-82750031 | None:intergenic | 35.0% | |
| AATGAACGAAAATACCTTGG+CGG | - | chr7.4:82750640-82750659 | None:intergenic | 35.0% | |
| ACAGTTTGCCTCTTAAAACT+TGG | + | chr7.4:82750026-82750045 | MS.gene44750:CDS | 35.0% | |
| ACATCTTATAACCAAGGGAA+GGG | + | chr7.4:82750718-82750737 | MS.gene44750:CDS | 35.0% | |
| AGGTTGTTAAGACTAAACCA+AGG | + | chr7.4:82749726-82749745 | MS.gene44750:CDS | 35.0% | |
| AGTTCATGCTGATATTCAGA+TGG | + | chr7.4:82749787-82749806 | MS.gene44750:CDS | 35.0% | |
| ATCAAGGAATACTAGTCCAA+TGG | + | chr7.4:82749664-82749683 | MS.gene44750:CDS | 35.0% | |
| CGAAGCCGAAAAATTAGAAA+CGG | - | chr7.4:82749875-82749894 | None:intergenic | 35.0% | |
| CTCTGCAGAGTATAAGAATT+TGG | + | chr7.4:82750569-82750588 | MS.gene44750:CDS | 35.0% | |
| GAAGAAACACATGCTACATT+TGG | + | chr7.4:82749758-82749777 | MS.gene44750:CDS | 35.0% | |
| GCTTCACATCTTATAACCAA+GGG | + | chr7.4:82750713-82750732 | MS.gene44750:CDS | 35.0% | |
| GGTTGTTAAGACTAAACCAA+GGG | + | chr7.4:82749727-82749746 | MS.gene44750:CDS | 35.0% | |
| GTTGTTAAGACTAAACCAAG+GGG | + | chr7.4:82749728-82749747 | MS.gene44750:CDS | 35.0% | |
| TCAACAAAGGCAACTGATAA+TGG | + | chr7.4:82750210-82750229 | MS.gene44750:CDS | 35.0% | |
| TCAAGGAATACTAGTCCAAT+GGG | + | chr7.4:82749665-82749684 | MS.gene44750:CDS | 35.0% | |
| TCAGATGGAGGATAACATAT+GGG | + | chr7.4:82749802-82749821 | MS.gene44750:CDS | 35.0% | |
| TCGATAAAAAGATCTGGTCT+TGG | + | chr7.4:82750755-82750774 | MS.gene44750:CDS | 35.0% | |
| TCGTTCATTATTGAGACTGT+CGG | + | chr7.4:82750651-82750670 | MS.gene44750:CDS | 35.0% | |
| TGCTTCACATCTTATAACCA+AGG | + | chr7.4:82750712-82750731 | MS.gene44750:CDS | 35.0% | |
| TTCAGATGGAGGATAACATA+TGG | + | chr7.4:82749801-82749820 | MS.gene44750:CDS | 35.0% | |
| TTGTGATTCTAGGTTGTACT+TGG | + | chr7.4:82750390-82750409 | MS.gene44750:CDS | 35.0% | |
| ! | GATAATGGTTGTTGATCGAT+CGG | + | chr7.4:82750225-82750244 | MS.gene44750:CDS | 35.0% |
| ! | TTAACAACCTTTTGCCTTGA+AGG | - | chr7.4:82749716-82749735 | None:intergenic | 35.0% |
| ! | TTCCGCCGTTTCTAATTTTT+CGG | + | chr7.4:82749867-82749886 | MS.gene44750:CDS | 35.0% |
| ! | TTTCACATTTTTGCCGCATT+GGG | + | chr7.4:82750060-82750079 | MS.gene44750:CDS | 35.0% |
| !! | AAAAAGATCTGGTCTTGGAT+TGG | + | chr7.4:82750760-82750779 | MS.gene44750:CDS | 35.0% |
| !! | TAGATAGAAGCATCAAACCT+TGG | - | chr7.4:82750832-82750851 | None:intergenic | 35.0% |
| !! | TCTAATTTTTCGGCTTCGTT+CGG | + | chr7.4:82749877-82749896 | MS.gene44750:CDS | 35.0% |
| AGATGGCGTATTGTGATTCT+AGG | + | chr7.4:82750380-82750399 | MS.gene44750:CDS | 40.0% | |
| AGCCGAAAAATTAGAAACGG+CGG | - | chr7.4:82749872-82749891 | None:intergenic | 40.0% | |
| ATCTCATGCAACAAATCCTC+AGG | - | chr7.4:82749836-82749855 | None:intergenic | 40.0% | |
| ATTTCCTCCAAGTTTGAGTG+AGG | - | chr7.4:82750171-82750190 | None:intergenic | 40.0% | |
| CACATCTTATAACCAAGGGA+AGG | + | chr7.4:82750717-82750736 | MS.gene44750:CDS | 40.0% | |
| CTGTACATCATCAAACCAAG+CGG | - | chr7.4:82750427-82750446 | None:intergenic | 40.0% | |
| GAGATGGAATTCATTGCTTC+AGG | + | chr7.4:82749907-82749926 | MS.gene44750:CDS | 40.0% | |
| GCTGAGAGATTTGAATGCTT+TGG | + | chr7.4:82750673-82750692 | MS.gene44750:CDS | 40.0% | |
| GTTTCTTCATCTAAACCCCT+TGG | - | chr7.4:82749746-82749765 | None:intergenic | 40.0% | |
| TATACAAGCTTCTCCTCCAA+GGG | + | chr7.4:82749634-82749653 | MS.gene44750:CDS | 40.0% | |
| TCATGCTGATATTCAGATGG+AGG | + | chr7.4:82749790-82749809 | MS.gene44750:CDS | 40.0% | |
| TTTCCTCCAAGTTTGAGTGA+GGG | - | chr7.4:82750170-82750189 | None:intergenic | 40.0% | |
| ! | ATCATGCCAAGATTTTGTGG+GGG | + | chr7.4:82750599-82750618 | MS.gene44750:CDS | 40.0% |
| ! | CTTTTTCTTGTTGGGAGGAT+TGG | + | chr7.4:82750535-82750554 | MS.gene44750:CDS | 40.0% |
| ! | GATCATGCCAAGATTTTGTG+GGG | + | chr7.4:82750598-82750617 | MS.gene44750:CDS | 40.0% |
| ! | GGATCATGCCAAGATTTTGT+GGG | + | chr7.4:82750597-82750616 | MS.gene44750:CDS | 40.0% |
| ! | GTCGTTACTTGATGGTTACT+TGG | + | chr7.4:82750492-82750511 | MS.gene44750:CDS | 40.0% |
| ! | GTTTCACATTTTTGCCGCAT+TGG | + | chr7.4:82750059-82750078 | MS.gene44750:CDS | 40.0% |
| ! | TACTCTGCAGAGTGCTATAA+AGG | - | chr7.4:82750561-82750580 | None:intergenic | 40.0% |
| ! | TGGATCATGCCAAGATTTTG+TGG | + | chr7.4:82750596-82750615 | MS.gene44750:CDS | 40.0% |
| ! | TTAGGGTCTGGTGTTAGTAT+TGG | + | chr7.4:82749566-82749585 | MS.gene44750:CDS | 40.0% |
| ! | TTCGTTCGGTTTGTAAGAGA+TGG | + | chr7.4:82749891-82749910 | MS.gene44750:CDS | 40.0% |
| !! | AAGCTTGTTTCTATGAGCCA+AGG | + | chr7.4:82750812-82750831 | MS.gene44750:CDS | 40.0% |
| !! | AGAAGCGGCTTTTTCTTGTT+GGG | + | chr7.4:82750527-82750546 | MS.gene44750:CDS | 40.0% |
| !!! | GTGGTCTTGTTTGCTTTTCT+GGG | + | chr7.4:82750107-82750126 | MS.gene44750:CDS | 40.0% |
| AAAAAGCCGCTTCTGAGTAC+CGG | - | chr7.4:82750521-82750540 | None:intergenic | 45.0% | |
| AGAACACAAGGTCCATGTGA+TGG | - | chr7.4:82749965-82749984 | None:intergenic | 45.0% | |
| ATACAAGCTTCTCCTCCAAG+GGG | + | chr7.4:82749635-82749654 | MS.gene44750:CDS | 45.0% | |
| CAATCTCTGCTCTTCGAAGA+TGG | + | chr7.4:82750363-82750382 | MS.gene44750:CDS | 45.0% | |
| CATCTTCGAAGAGCAGAGAT+TGG | - | chr7.4:82750365-82750384 | None:intergenic | 45.0% | |
| GTAATCCCCTCACTCAAACT+TGG | + | chr7.4:82750161-82750180 | MS.gene44750:CDS | 45.0% | |
| GTATACAAGCTTCTCCTCCA+AGG | + | chr7.4:82749633-82749652 | MS.gene44750:CDS | 45.0% | |
| TAACCATCAAGTAACGACCG+CGG | - | chr7.4:82750490-82750509 | None:intergenic | 45.0% | |
| TTCCTCCAAGTTTGAGTGAG+GGG | - | chr7.4:82750169-82750188 | None:intergenic | 45.0% | |
| TTCCTTGATCCATTTCCCCT+TGG | - | chr7.4:82749653-82749672 | None:intergenic | 45.0% | |
| ! | CTTGATGGTTACTTGGTTGC+CGG | + | chr7.4:82750499-82750518 | MS.gene44750:CDS | 45.0% |
| ! | TCATGCCAAGATTTTGTGGG+GGG | + | chr7.4:82750600-82750619 | MS.gene44750:CDS | 45.0% |
| !! | AAGATCTGGTCTTGGATTGG+TGG | + | chr7.4:82750763-82750782 | MS.gene44750:CDS | 45.0% |
| !! | AGATCTGGTCTTGGATTGGT+GGG | + | chr7.4:82750764-82750783 | MS.gene44750:CDS | 45.0% |
| !! | CAGAAGCGGCTTTTTCTTGT+TGG | + | chr7.4:82750526-82750545 | MS.gene44750:CDS | 45.0% |
| !!! | GGTGGTCTTGTTTGCTTTTC+TGG | + | chr7.4:82750106-82750125 | MS.gene44750:CDS | 45.0% |
| AACCATCAAGTAACGACCGC+GGG | - | chr7.4:82750489-82750508 | None:intergenic | 50.0% | |
| ACTAGTCCAATGGGTCGAGT+CGG | + | chr7.4:82749674-82749693 | MS.gene44750:CDS | 50.0% | |
| ATATTCCGGCTAAGTTCCCG+CGG | + | chr7.4:82750470-82750489 | MS.gene44750:CDS | 50.0% | |
| ATCCCCTCACTCAAACTTGG+AGG | + | chr7.4:82750164-82750183 | MS.gene44750:CDS | 50.0% | |
| CAAATAGAAGGCCCTTCCCT+TGG | - | chr7.4:82750732-82750751 | None:intergenic | 50.0% | |
| CACGAGTCCTTCAAGGCAAA+AGG | + | chr7.4:82749706-82749725 | MS.gene44750:CDS | 50.0% | |
| CATCAAACCAAGCGGCGAAA+GGG | - | chr7.4:82750419-82750438 | None:intergenic | 50.0% | |
| CATTCGAGTGTGCCATCACA+TGG | + | chr7.4:82749950-82749969 | MS.gene44750:CDS | 50.0% | |
| CTCCAAGGGGAAATGGATCA+AGG | + | chr7.4:82749648-82749667 | MS.gene44750:CDS | 50.0% | |
| CTTGATCCATTTCCCCTTGG+AGG | - | chr7.4:82749650-82749669 | None:intergenic | 50.0% | |
| GAAGAGCAGAGATTGGAAGC+CGG | - | chr7.4:82750358-82750377 | None:intergenic | 50.0% | |
| GATCTCCCCCCACAAAATCT+TGG | - | chr7.4:82750608-82750627 | None:intergenic | 50.0% | |
| GTCTGTCCATCAGACTATGC+CGG | + | chr7.4:82750336-82750355 | MS.gene44750:CDS | 50.0% | |
| TCATCAAACCAAGCGGCGAA+AGG | - | chr7.4:82750420-82750439 | None:intergenic | 50.0% | |
| ! | CATATGGGCTATGTTGCCTG+AGG | + | chr7.4:82749817-82749836 | MS.gene44750:CDS | 50.0% |
| ! | TTTTGTGGGGGGAGATCAGT+AGG | + | chr7.4:82750611-82750630 | MS.gene44750:CDS | 50.0% |
| !! | AGCGGCTTTTTCTTGTTGGG+AGG | + | chr7.4:82750530-82750549 | MS.gene44750:CDS | 50.0% |
| !! | GTTTGCTTTTCTGGGTGCGA+AGG | + | chr7.4:82750115-82750134 | MS.gene44750:CDS | 50.0% |
| AGATCAGTAGGATGCCGCCA+AGG | + | chr7.4:82750623-82750642 | MS.gene44750:CDS | 55.0% | |
| CGAGGAACACGAGTCCTTCA+AGG | + | chr7.4:82749699-82749718 | MS.gene44750:CDS | 55.0% | |
| CTAGTCCAATGGGTCGAGTC+GGG | + | chr7.4:82749675-82749694 | MS.gene44750:CDS | 55.0% | |
| GCTTCTCCTCCAAGGGGAAA+TGG | + | chr7.4:82749641-82749660 | MS.gene44750:CDS | 55.0% | |
| TGGAAGCCGGCATAGTCTGA+TGG | - | chr7.4:82750345-82750364 | None:intergenic | 55.0% | |
| TGGTTGCCGGTACTCAGAAG+CGG | + | chr7.4:82750512-82750531 | MS.gene44750:CDS | 55.0% | |
| TTCCCGCGGTCGTTACTTGA+TGG | + | chr7.4:82750484-82750503 | MS.gene44750:CDS | 55.0% | |
| TTGGAAACCCTTTCGCCGCT+TGG | + | chr7.4:82750409-82750428 | MS.gene44750:CDS | 55.0% | |
| ! | ATCTGGCTGGTTGGGTCATC+TGG | + | chr7.4:82750085-82750104 | MS.gene44750:CDS | 55.0% |
| ! | ATTGGGCGATCTGGCTGGTT+GGG | + | chr7.4:82750077-82750096 | MS.gene44750:CDS | 55.0% |
| ! | TTTTGCCGCATTGGGCGATC+TGG | + | chr7.4:82750068-82750087 | MS.gene44750:CDS | 55.0% |
| AACGACCGCGGGAACTTAGC+CGG | - | chr7.4:82750478-82750497 | None:intergenic | 60.0% | |
| ACCAGCCAGATCGCCCAATG+CGG | - | chr7.4:82750076-82750095 | None:intergenic | 60.0% | |
| CATTGGGCGATCTGGCTGGT+TGG | + | chr7.4:82750076-82750095 | MS.gene44750:CDS | 60.0% | |
| ! | TGGCTGGTTGGGTCATCTGG+TGG | + | chr7.4:82750088-82750107 | MS.gene44750:CDS | 60.0% |
| CAATGGGTCGAGTCGGGTCG+AGG | + | chr7.4:82749681-82749700 | MS.gene44750:CDS | 65.0% | |
| ! | CTCGACCCGACTCGACCCAT+TGG | - | chr7.4:82749683-82749702 | None:intergenic | 65.0% |
| GCCGCATTGGGCGATCTGGC+TGG | + | chr7.4:82750072-82750091 | MS.gene44750:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 82749539 | 82750855 | 82749539 | ID=MS.gene44750 |
| chr7.4 | mRNA | 82749539 | 82750855 | 82749539 | ID=MS.gene44750.t1;Parent=MS.gene44750 |
| chr7.4 | exon | 82749539 | 82750855 | 82749539 | ID=MS.gene44750.t1.exon1;Parent=MS.gene44750.t1 |
| chr7.4 | CDS | 82749539 | 82750855 | 82749539 | ID=cds.MS.gene44750.t1;Parent=MS.gene44750.t1 |
| Gene Sequence |
| Protein sequence |
