Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44793.t1 | XP_013447731.1 | 93.9 | 375 | 20 | 3 | 1 | 373 | 1 | 374 | 4.80E-129 | 471.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44793.t1 | Q9FYG7 | 52.3 | 111 | 46 | 2 | 73 | 183 | 47 | 150 | 3.4e-22 | 107.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44793.t1 | A0A072TXB5 | 93.9 | 375 | 20 | 3 | 1 | 373 | 1 | 374 | 3.5e-129 | 471.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene44793.t1 | TF | TCP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053074 | MS.gene44793 | 0.803313 | 3.70E-49 | -1.69E-46 |
| MS.gene058168 | MS.gene44793 | 0.821018 | 5.05E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44793.t1 | MTR_7g018500 | 95.200 | 375 | 15 | 3 | 1 | 373 | 1 | 374 | 0.0 | 552 |
| MS.gene44793.t1 | MTR_6g017055 | 48.596 | 356 | 102 | 16 | 73 | 366 | 67 | 403 | 2.42e-75 | 239 |
| MS.gene44793.t1 | MTR_1g103380 | 35.602 | 382 | 163 | 14 | 43 | 356 | 119 | 485 | 2.86e-43 | 157 |
| MS.gene44793.t1 | MTR_4g111935 | 33.459 | 266 | 141 | 11 | 5 | 245 | 14 | 268 | 8.05e-27 | 110 |
| MS.gene44793.t1 | MTR_2g078200 | 53.846 | 65 | 30 | 0 | 115 | 179 | 15 | 79 | 6.39e-17 | 80.9 |
| MS.gene44793.t1 | MTR_2g090960 | 51.562 | 64 | 31 | 0 | 115 | 178 | 19 | 82 | 1.65e-16 | 80.1 |
| MS.gene44793.t1 | MTR_4g079580 | 52.308 | 65 | 31 | 0 | 115 | 179 | 17 | 81 | 2.00e-16 | 79.7 |
| MS.gene44793.t1 | MTR_8g463380 | 52.308 | 65 | 31 | 0 | 115 | 179 | 49 | 113 | 2.01e-16 | 80.5 |
| MS.gene44793.t1 | MTR_6g015350 | 47.561 | 82 | 41 | 1 | 119 | 200 | 48 | 127 | 4.34e-16 | 79.0 |
| MS.gene44793.t1 | MTR_7g015010 | 51.667 | 60 | 29 | 0 | 119 | 178 | 56 | 115 | 1.94e-14 | 74.3 |
| MS.gene44793.t1 | MTR_4g109660 | 48.333 | 60 | 31 | 0 | 119 | 178 | 55 | 114 | 5.45e-13 | 69.3 |
| MS.gene44793.t1 | MTR_3g026050 | 48.333 | 60 | 31 | 0 | 119 | 178 | 56 | 115 | 2.65e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44793.t1 | AT1G67260 | 37.313 | 268 | 131 | 11 | 73 | 312 | 47 | 305 | 2.77e-34 | 130 |
| MS.gene44793.t1 | AT1G67260 | 37.313 | 268 | 131 | 11 | 73 | 312 | 47 | 305 | 2.77e-34 | 130 |
| MS.gene44793.t1 | AT1G67260 | 37.313 | 268 | 131 | 11 | 73 | 312 | 47 | 305 | 2.79e-34 | 130 |
| MS.gene44793.t1 | AT1G68800 | 54.867 | 113 | 42 | 4 | 120 | 229 | 112 | 218 | 1.89e-25 | 106 |
| MS.gene44793.t1 | AT1G68800 | 54.867 | 113 | 42 | 4 | 120 | 229 | 112 | 218 | 2.25e-25 | 105 |
| MS.gene44793.t1 | AT3G18550 | 39.216 | 153 | 69 | 3 | 113 | 241 | 141 | 293 | 7.51e-22 | 96.7 |
| MS.gene44793.t1 | AT3G18550 | 37.580 | 157 | 70 | 4 | 113 | 241 | 141 | 297 | 1.31e-20 | 93.2 |
| MS.gene44793.t1 | AT3G18550 | 36.943 | 157 | 71 | 3 | 113 | 241 | 141 | 297 | 1.64e-20 | 92.8 |
| MS.gene44793.t1 | AT3G18550 | 36.943 | 157 | 71 | 3 | 113 | 241 | 141 | 297 | 1.64e-20 | 92.8 |
| MS.gene44793.t1 | AT4G18390 | 37.671 | 146 | 87 | 3 | 103 | 248 | 27 | 168 | 3.05e-18 | 85.5 |
| MS.gene44793.t1 | AT4G18390 | 37.671 | 146 | 87 | 3 | 103 | 248 | 27 | 168 | 3.05e-18 | 85.5 |
| MS.gene44793.t1 | AT1G30210 | 53.968 | 63 | 29 | 0 | 116 | 178 | 46 | 108 | 1.66e-16 | 80.1 |
| MS.gene44793.t1 | AT1G30210 | 53.968 | 63 | 29 | 0 | 116 | 178 | 46 | 108 | 1.66e-16 | 80.1 |
| MS.gene44793.t1 | AT1G53230 | 51.515 | 66 | 32 | 0 | 115 | 180 | 44 | 109 | 2.17e-16 | 80.5 |
| MS.gene44793.t1 | AT1G53230 | 51.515 | 66 | 32 | 0 | 115 | 180 | 44 | 109 | 2.17e-16 | 80.5 |
| MS.gene44793.t1 | AT3G15030 | 52.308 | 65 | 31 | 0 | 115 | 179 | 40 | 104 | 2.80e-16 | 80.1 |
| MS.gene44793.t1 | AT3G15030 | 52.308 | 65 | 31 | 0 | 115 | 179 | 40 | 104 | 2.80e-16 | 80.1 |
| MS.gene44793.t1 | AT3G15030 | 52.308 | 65 | 31 | 0 | 115 | 179 | 40 | 104 | 2.80e-16 | 80.1 |
| MS.gene44793.t1 | AT3G15030 | 52.308 | 65 | 31 | 0 | 115 | 179 | 40 | 104 | 2.80e-16 | 80.1 |
| MS.gene44793.t1 | AT2G31070 | 51.562 | 64 | 31 | 0 | 115 | 178 | 24 | 87 | 5.93e-16 | 79.0 |
| MS.gene44793.t1 | AT3G02150 | 53.333 | 60 | 28 | 0 | 119 | 178 | 73 | 132 | 1.05e-14 | 73.9 |
| MS.gene44793.t1 | AT3G02150 | 53.333 | 60 | 28 | 0 | 119 | 178 | 73 | 132 | 1.66e-14 | 74.3 |
| MS.gene44793.t1 | AT5G60970 | 46.667 | 60 | 32 | 0 | 119 | 178 | 62 | 121 | 8.50e-13 | 69.3 |
| MS.gene44793.t1 | AT5G08070 | 45.000 | 60 | 33 | 0 | 119 | 178 | 32 | 91 | 2.27e-11 | 63.9 |
| MS.gene44793.t1 | AT5G08070 | 45.000 | 60 | 33 | 0 | 119 | 178 | 32 | 91 | 2.27e-11 | 63.9 |
Find 62 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCAACTTATTGCTCTTT+AGG | 0.129653 | 7.4:-81648616 | MS.gene44793:CDS |
| ATCCTGATACACTAACAAAT+TGG | 0.193845 | 7.4:-81648390 | MS.gene44793:CDS |
| GCCCAATTTGTTAGTGTATC+AGG | 0.208804 | 7.4:+81648388 | None:intergenic |
| CTCCAATGTTATCACCAAAT+TGG | 0.217754 | 7.4:-81647661 | MS.gene44793:CDS |
| GTTAGTGTATCAGGATTAAT+TGG | 0.223236 | 7.4:+81648397 | None:intergenic |
| CTTCGAAGACGAAGGATTCT+AGG | 0.286350 | 7.4:-81647955 | MS.gene44793:CDS |
| TGTGAAGAAGAAGATGAATT+AGG | 0.330614 | 7.4:+81648574 | None:intergenic |
| TTCGATCTTCAAGACATGTT+AGG | 0.334610 | 7.4:-81648178 | MS.gene44793:CDS |
| TTTGAAGTTTCATCCTCATT+AGG | 0.336904 | 7.4:+81647818 | None:intergenic |
| TTATTATTAGCATCCCAATT+TGG | 0.341400 | 7.4:+81647647 | None:intergenic |
| TCATGAGAATCACTATTATT+AGG | 0.353829 | 7.4:+81647686 | None:intergenic |
| GAGCCATTCAAGTGTGTTGC+TGG | 0.358400 | 7.4:+81648144 | None:intergenic |
| TTCTTAGCCGGTTTCTTGAC+AGG | 0.362180 | 7.4:+81648283 | None:intergenic |
| AATATCAGCTAATATCGATT+TGG | 0.375751 | 7.4:+81647378 | None:intergenic |
| TCAGGGGTAAGAAAAGTAAA+AGG | 0.386359 | 7.4:+81648541 | None:intergenic |
| TTCAAATCTTTGGAAAATCA+TGG | 0.409744 | 7.4:-81647419 | MS.gene44793:CDS |
| AAAGTTGTTGATGTTGTTGT+TGG | 0.410045 | 7.4:+81648477 | None:intergenic |
| TCCAATGTTATCACCAAATT+GGG | 0.411724 | 7.4:-81647660 | MS.gene44793:CDS |
| CTAAAGATAGAAAGATGAAA+AGG | 0.414926 | 7.4:-81647991 | MS.gene44793:CDS |
| CTATGCCTGTCTTTCTTAGC+CGG | 0.420461 | 7.4:+81648271 | None:intergenic |
| TCTTGATATTGCAGAAAAGT+TGG | 0.424180 | 7.4:+81647598 | None:intergenic |
| TCTTCTTCGTCTTCCGATGA+AGG | 0.430527 | 7.4:-81648031 | MS.gene44793:CDS |
| TCCTGATACACTAACAAATT+GGG | 0.434497 | 7.4:-81648389 | MS.gene44793:CDS |
| TCGATCTTCAAGACATGTTA+GGG | 0.442491 | 7.4:-81648177 | MS.gene44793:CDS |
| GGTGTTGTTAGTGTTGTTGT+TGG | 0.445348 | 7.4:+81648498 | None:intergenic |
| GAACTTCCTCGCGATCTCAA+TGG | 0.448325 | 7.4:+81648201 | None:intergenic |
| AGCAAGAACAACATAGCTTC+TGG | 0.450038 | 7.4:-81648082 | MS.gene44793:CDS |
| TGATGAGTTGTTTGTGTGTA+GGG | 0.490224 | 7.4:+81648427 | None:intergenic |
| AAAGAAACCTGTCAAGAAAC+CGG | 0.493437 | 7.4:-81648290 | MS.gene44793:CDS |
| AATAACAATGATGCTGTCAC+TGG | 0.496363 | 7.4:-81647626 | MS.gene44793:CDS |
| CATTAGGCATCAATTGATGA+AGG | 0.499616 | 7.4:+81647834 | None:intergenic |
| CCTAAAGAGCAATAAGTTGA+AGG | 0.500471 | 7.4:+81648616 | None:intergenic |
| AGCAAGATTCACACATCTCA+AGG | 0.503482 | 7.4:-81648250 | MS.gene44793:CDS |
| TCAAGAACGAATCTATCATC+AGG | 0.510472 | 7.4:-81647581 | MS.gene44793:intron |
| ATCTTCTTCATCTCCTTCAT+CGG | 0.512276 | 7.4:+81648018 | None:intergenic |
| AAAGATGAAAAGGGCACAGA+AGG | 0.517893 | 7.4:-81647981 | MS.gene44793:CDS |
| TAAAGATAGAAAGATGAAAA+GGG | 0.526209 | 7.4:-81647990 | MS.gene44793:CDS |
| TCAAATCTTTGGAAAATCAT+GGG | 0.526493 | 7.4:-81647418 | MS.gene44793:CDS |
| TAGGGAACAGAAATAGCTGC+TGG | 0.529350 | 7.4:+81648445 | None:intergenic |
| AGAAAACAAGAGCAAGAGCA+AGG | 0.530089 | 7.4:-81647931 | MS.gene44793:CDS |
| AAGCCAGCAACACACTTGAA+TGG | 0.532128 | 7.4:-81648147 | MS.gene44793:CDS |
| TCATCAATTGATGCCTAATG+AGG | 0.536962 | 7.4:-81647831 | MS.gene44793:CDS |
| TTCGAAGACGAAGGATTCTA+GGG | 0.537014 | 7.4:-81647954 | MS.gene44793:CDS |
| TGATATCTTTAACTTCATTG+AGG | 0.548363 | 7.4:-81647780 | MS.gene44793:CDS |
| GGGGTAAGAAAAGTAAAAGG+AGG | 0.548490 | 7.4:+81648544 | None:intergenic |
| AGAAACCGGCTAAGAAAGAC+AGG | 0.549112 | 7.4:-81648276 | MS.gene44793:CDS |
| TTAGGATTATAACAAGGGTA+AGG | 0.556043 | 7.4:+81648592 | None:intergenic |
| TCCCAATTTGGTGATAACAT+TGG | 0.563066 | 7.4:+81647659 | None:intergenic |
| ATGAATTAGGATTATAACAA+GGG | 0.570279 | 7.4:+81648587 | None:intergenic |
| GGGTAAGAAAAGTAAAAGGA+GGG | 0.575339 | 7.4:+81648545 | None:intergenic |
| ATGATGAGTTGTTTGTGTGT+AGG | 0.581066 | 7.4:+81648426 | None:intergenic |
| GACTTTCCATTGAGATCGCG+AGG | 0.582238 | 7.4:-81648207 | MS.gene44793:CDS |
| CAGCTAATATCGATTTGGAC+TGG | 0.588709 | 7.4:+81647383 | None:intergenic |
| GAAAACAAGAGCAAGAGCAA+GGG | 0.591086 | 7.4:-81647930 | MS.gene44793:CDS |
| GATGAATTAGGATTATAACA+AGG | 0.592158 | 7.4:+81648586 | None:intergenic |
| CTCAAGGGTTGAGAGACAGA+AGG | 0.613193 | 7.4:-81648234 | MS.gene44793:CDS |
| TCAAGGGTTGAGAGACAGAA+GGG | 0.623957 | 7.4:-81648233 | MS.gene44793:CDS |
| AATCTTTGGAAAATCATGGG+AGG | 0.624471 | 7.4:-81647415 | MS.gene44793:CDS |
| GCAAGATTCACACATCTCAA+GGG | 0.635283 | 7.4:-81648249 | MS.gene44793:CDS |
| GAAGGAATCTTCGAAGACGA+AGG | 0.639563 | 7.4:-81647963 | MS.gene44793:CDS |
| GCTTCTGGCGATGACGACGA+TGG | 0.659720 | 7.4:-81648067 | MS.gene44793:CDS |
| ATGTTGAAACAAGATCTAAG+TGG | 0.698091 | 7.4:-81648346 | MS.gene44793:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAAAATTAATTAACAAAA+AGG | - | chr7.4:81648492-81648511 | MS.gene44793:CDS | 10.0% |
| !!! | TTTTAGGTTTAAACTTTTTA+GGG | - | chr7.4:81648565-81648584 | MS.gene44793:CDS | 15.0% |
| !!! | TTTTTAGGTTTAAACTTTTT+AGG | - | chr7.4:81648564-81648583 | MS.gene44793:CDS | 15.0% |
| !! | ATGAATTAGGATTATAACAA+GGG | + | chr7.4:81647424-81647443 | None:intergenic | 20.0% |
| !! | TAAAGATAGAAAGATGAAAA+GGG | - | chr7.4:81648018-81648037 | MS.gene44793:CDS | 20.0% |
| !!! | TTGTGATACTTACAATTTTT+AGG | - | chr7.4:81648549-81648568 | MS.gene44793:CDS | 20.0% |
| ! | CTAAAGATAGAAAGATGAAA+AGG | - | chr7.4:81648017-81648036 | MS.gene44793:CDS | 25.0% |
| ! | GATGAATTAGGATTATAACA+AGG | + | chr7.4:81647425-81647444 | None:intergenic | 25.0% |
| ! | TCATGAGAATCACTATTATT+AGG | + | chr7.4:81648325-81648344 | None:intergenic | 25.0% |
| ! | TTATTATTAGCATCCCAATT+TGG | + | chr7.4:81648364-81648383 | None:intergenic | 25.0% |
| !! | TCAAATCTTTGGAAAATCAT+GGG | - | chr7.4:81648590-81648609 | MS.gene44793:CDS | 25.0% |
| !! | TGATATCTTTAACTTCATTG+AGG | - | chr7.4:81648228-81648247 | MS.gene44793:CDS | 25.0% |
| !! | TTCAAATCTTTGGAAAATCA+TGG | - | chr7.4:81648589-81648608 | MS.gene44793:CDS | 25.0% |
| !!! | TGTTGATTTTGATCAATTTC+AGG | + | chr7.4:81648151-81648170 | None:intergenic | 25.0% |
| AAAGTTGTTGATGTTGTTGT+TGG | + | chr7.4:81647534-81647553 | None:intergenic | 30.0% | |
| ATCCTGATACACTAACAAAT+TGG | - | chr7.4:81647618-81647637 | MS.gene44793:CDS | 30.0% | |
| ATGTTGAAACAAGATCTAAG+TGG | - | chr7.4:81647662-81647681 | MS.gene44793:CDS | 30.0% | |
| GTTAGTGTATCAGGATTAAT+TGG | + | chr7.4:81647614-81647633 | None:intergenic | 30.0% | |
| TCCAATGTTATCACCAAATT+GGG | - | chr7.4:81648348-81648367 | MS.gene44793:CDS | 30.0% | |
| TCCTGATACACTAACAAATT+GGG | - | chr7.4:81647619-81647638 | MS.gene44793:CDS | 30.0% | |
| TCTTGATATTGCAGAAAAGT+TGG | + | chr7.4:81648413-81648432 | None:intergenic | 30.0% | |
| TGTGAAGAAGAAGATGAATT+AGG | + | chr7.4:81647437-81647456 | None:intergenic | 30.0% | |
| TTAGGATTATAACAAGGGTA+AGG | + | chr7.4:81647419-81647438 | None:intergenic | 30.0% | |
| ! | GCATCAAATTAGTGTTTTGT+TGG | + | chr7.4:81648303-81648322 | None:intergenic | 30.0% |
| ! | TTTGAAGTTTCATCCTCATT+AGG | + | chr7.4:81648193-81648212 | None:intergenic | 30.0% |
| !!! | TAGAAGAAGCATTTTGATCA+GGG | + | chr7.4:81647487-81647506 | None:intergenic | 30.0% |
| !!! | TTAGAAGAAGCATTTTGATC+AGG | + | chr7.4:81647488-81647507 | None:intergenic | 30.0% |
| !!! | TTTTTAGGGCTTCAAATCTT+TGG | - | chr7.4:81648579-81648598 | MS.gene44793:CDS | 30.0% |
| AAAGAAACCTGTCAAGAAAC+CGG | - | chr7.4:81647718-81647737 | MS.gene44793:CDS | 35.0% | |
| AATAACAATGATGCTGTCAC+TGG | - | chr7.4:81648382-81648401 | MS.gene44793:CDS | 35.0% | |
| ATCTTCTTCATCTCCTTCAT+CGG | + | chr7.4:81647993-81648012 | None:intergenic | 35.0% | |
| ATGATGAGTTGTTTGTGTGT+AGG | + | chr7.4:81647585-81647604 | None:intergenic | 35.0% | |
| CATTAGGCATCAATTGATGA+AGG | + | chr7.4:81648177-81648196 | None:intergenic | 35.0% | |
| CCTTCAACTTATTGCTCTTT+AGG | - | chr7.4:81647392-81647411 | MS.gene44793:CDS | 35.0% | |
| CTCCAATGTTATCACCAAAT+TGG | - | chr7.4:81648347-81648366 | MS.gene44793:CDS | 35.0% | |
| GGGTAAGAAAAGTAAAAGGA+GGG | + | chr7.4:81647466-81647485 | None:intergenic | 35.0% | |
| TCAAGAACGAATCTATCATC+AGG | - | chr7.4:81648427-81648446 | MS.gene44793:CDS | 35.0% | |
| TCAGGGGTAAGAAAAGTAAA+AGG | + | chr7.4:81647470-81647489 | None:intergenic | 35.0% | |
| TCATCAATTGATGCCTAATG+AGG | - | chr7.4:81648177-81648196 | MS.gene44793:CDS | 35.0% | |
| TCGATCTTCAAGACATGTTA+GGG | - | chr7.4:81647831-81647850 | MS.gene44793:CDS | 35.0% | |
| TGATGAGTTGTTTGTGTGTA+GGG | + | chr7.4:81647584-81647603 | None:intergenic | 35.0% | |
| TTCGATCTTCAAGACATGTT+AGG | - | chr7.4:81647830-81647849 | MS.gene44793:CDS | 35.0% | |
| ! | AATCTTTGGAAAATCATGGG+AGG | - | chr7.4:81648593-81648612 | MS.gene44793:CDS | 35.0% |
| ! | CCTAAAGAGCAATAAGTTGA+AGG | + | chr7.4:81647395-81647414 | None:intergenic | 35.0% |
| ! | TCCCAATTTGGTGATAACAT+TGG | + | chr7.4:81648352-81648371 | None:intergenic | 35.0% |
| !!! | AGAAGAAGCATTTTGATCAG+GGG | + | chr7.4:81647486-81647505 | None:intergenic | 35.0% |
| AGAAAACAAGAGCAAGAGCA+AGG | - | chr7.4:81648077-81648096 | MS.gene44793:CDS | 40.0% | |
| AGCAAGAACAACATAGCTTC+TGG | - | chr7.4:81647926-81647945 | MS.gene44793:CDS | 40.0% | |
| AGCAAGATTCACACATCTCA+AGG | - | chr7.4:81647758-81647777 | MS.gene44793:CDS | 40.0% | |
| GAAAACAAGAGCAAGAGCAA+GGG | - | chr7.4:81648078-81648097 | MS.gene44793:CDS | 40.0% | |
| GCAAGATTCACACATCTCAA+GGG | - | chr7.4:81647759-81647778 | MS.gene44793:CDS | 40.0% | |
| GGGGTAAGAAAAGTAAAAGG+AGG | + | chr7.4:81647467-81647486 | None:intergenic | 40.0% | |
| TTCGAAGACGAAGGATTCTA+GGG | - | chr7.4:81648054-81648073 | MS.gene44793:CDS | 40.0% | |
| ! | AAAGATGAAAAGGGCACAGA+AGG | - | chr7.4:81648027-81648046 | MS.gene44793:CDS | 40.0% |
| !! | GCCCAATTTGTTAGTGTATC+AGG | + | chr7.4:81647623-81647642 | None:intergenic | 40.0% |
| !! | GGTGTTGTTAGTGTTGTTGT+TGG | + | chr7.4:81647513-81647532 | None:intergenic | 40.0% |
| AAGCCAGCAACACACTTGAA+TGG | - | chr7.4:81647861-81647880 | MS.gene44793:CDS | 45.0% | |
| AGAAACCGGCTAAGAAAGAC+AGG | - | chr7.4:81647732-81647751 | MS.gene44793:CDS | 45.0% | |
| CTATGCCTGTCTTTCTTAGC+CGG | + | chr7.4:81647740-81647759 | None:intergenic | 45.0% | |
| CTTCGAAGACGAAGGATTCT+AGG | - | chr7.4:81648053-81648072 | MS.gene44793:CDS | 45.0% | |
| GAAGGAATCTTCGAAGACGA+AGG | - | chr7.4:81648045-81648064 | MS.gene44793:CDS | 45.0% | |
| TAGGGAACAGAAATAGCTGC+TGG | + | chr7.4:81647566-81647585 | None:intergenic | 45.0% | |
| TCAAGGGTTGAGAGACAGAA+GGG | - | chr7.4:81647775-81647794 | MS.gene44793:CDS | 45.0% | |
| TCTTCTTCGTCTTCCGATGA+AGG | - | chr7.4:81647977-81647996 | MS.gene44793:CDS | 45.0% | |
| ! | TTCTTAGCCGGTTTCTTGAC+AGG | + | chr7.4:81647728-81647747 | None:intergenic | 45.0% |
| CTCAAGGGTTGAGAGACAGA+AGG | - | chr7.4:81647774-81647793 | MS.gene44793:CDS | 50.0% | |
| GAACTTCCTCGCGATCTCAA+TGG | + | chr7.4:81647810-81647829 | None:intergenic | 50.0% | |
| GACTTTCCATTGAGATCGCG+AGG | - | chr7.4:81647801-81647820 | MS.gene44793:CDS | 50.0% | |
| GAGCCATTCAAGTGTGTTGC+TGG | + | chr7.4:81647867-81647886 | None:intergenic | 50.0% | |
| GCTTCTGGCGATGACGACGA+TGG | - | chr7.4:81647941-81647960 | MS.gene44793:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 81647386 | 81648644 | 81647386 | ID=MS.gene44793 |
| chr7.4 | mRNA | 81647386 | 81648644 | 81647386 | ID=MS.gene44793.t1;Parent=MS.gene44793 |
| chr7.4 | exon | 81647582 | 81648644 | 81647582 | ID=MS.gene44793.t1.exon1;Parent=MS.gene44793.t1 |
| chr7.4 | CDS | 81647582 | 81648644 | 81647582 | ID=cds.MS.gene44793.t1;Parent=MS.gene44793.t1 |
| chr7.4 | exon | 81647386 | 81647444 | 81647386 | ID=MS.gene44793.t1.exon2;Parent=MS.gene44793.t1 |
| chr7.4 | CDS | 81647386 | 81647444 | 81647386 | ID=cds.MS.gene44793.t1;Parent=MS.gene44793.t1 |
| Gene Sequence |
| Protein sequence |
