Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44855.t1 | RHN56435.1 | 98.8 | 517 | 6 | 0 | 1 | 517 | 79 | 595 | 6.70E-287 | 996.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44855.t1 | Q66GI9 | 70.3 | 509 | 135 | 6 | 11 | 515 | 34 | 530 | 4.6e-196 | 685.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44855.t1 | G7KE37 | 98.8 | 517 | 6 | 0 | 1 | 517 | 1 | 517 | 4.8e-287 | 996.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene057148 | MS.gene44855 | 0.807578 | 4.72E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene004003 | MS.gene44855 | PPI |
MS.gene67345 | MS.gene44855 | PPI |
MS.gene41133 | MS.gene44855 | PPI |
MS.gene30561 | MS.gene44855 | PPI |
MS.gene054996 | MS.gene44855 | PPI |
MS.gene021154 | MS.gene44855 | PPI |
MS.gene44855 | MS.gene45934 | PPI |
MS.gene93642 | MS.gene44855 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44855.t1 | MTR_5g069630 | 98.839 | 517 | 6 | 0 | 1 | 517 | 1 | 517 | 0.0 | 1030 |
MS.gene44855.t1 | MTR_7g066780 | 56.115 | 417 | 179 | 1 | 96 | 512 | 93 | 505 | 6.11e-166 | 482 |
MS.gene44855.t1 | MTR_8g030600 | 39.627 | 429 | 250 | 3 | 84 | 512 | 167 | 586 | 7.35e-106 | 330 |
MS.gene44855.t1 | MTR_3g463080 | 40.528 | 417 | 241 | 2 | 96 | 512 | 105 | 514 | 4.22e-103 | 321 |
MS.gene44855.t1 | MTR_7g077830 | 39.329 | 417 | 246 | 2 | 96 | 512 | 123 | 532 | 1.04e-102 | 320 |
MS.gene44855.t1 | MTR_8g030600 | 40.882 | 340 | 193 | 2 | 84 | 423 | 167 | 498 | 1.19e-83 | 270 |
MS.gene44855.t1 | MTR_4g116030 | 32.850 | 414 | 256 | 5 | 97 | 499 | 110 | 512 | 8.44e-65 | 221 |
MS.gene44855.t1 | MTR_4g030900 | 29.318 | 440 | 287 | 7 | 97 | 515 | 7 | 443 | 2.01e-53 | 188 |
MS.gene44855.t1 | MTR_2g027710 | 39.877 | 163 | 98 | 0 | 314 | 476 | 72 | 234 | 5.33e-40 | 147 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44855.t1 | AT3G46980 | 70.334 | 509 | 135 | 6 | 11 | 515 | 82 | 578 | 0.0 | 695 |
MS.gene44855.t1 | AT3G46980 | 70.334 | 509 | 135 | 6 | 11 | 515 | 34 | 530 | 0.0 | 694 |
MS.gene44855.t1 | AT3G46980 | 70.334 | 509 | 135 | 6 | 11 | 515 | 34 | 530 | 0.0 | 694 |
MS.gene44855.t1 | AT3G46980 | 76.068 | 351 | 81 | 2 | 167 | 515 | 1 | 350 | 0.0 | 557 |
MS.gene44855.t1 | AT3G46980 | 76.068 | 351 | 81 | 2 | 167 | 515 | 1 | 350 | 0.0 | 557 |
MS.gene44855.t1 | AT3G46980 | 76.068 | 351 | 81 | 2 | 167 | 515 | 1 | 350 | 0.0 | 557 |
MS.gene44855.t1 | AT3G46980 | 76.068 | 351 | 81 | 2 | 167 | 515 | 1 | 350 | 0.0 | 557 |
MS.gene44855.t1 | AT2G38060 | 56.325 | 419 | 177 | 2 | 96 | 512 | 97 | 511 | 1.87e-164 | 478 |
MS.gene44855.t1 | AT3G46980 | 74.564 | 287 | 70 | 2 | 231 | 515 | 1 | 286 | 6.87e-157 | 451 |
MS.gene44855.t1 | AT2G38060 | 56.712 | 365 | 152 | 2 | 96 | 458 | 97 | 457 | 6.05e-140 | 417 |
MS.gene44855.t1 | AT4G00370 | 35.756 | 509 | 303 | 6 | 18 | 512 | 41 | 539 | 6.05e-106 | 329 |
MS.gene44855.t1 | AT2G29650 | 40.376 | 426 | 245 | 3 | 87 | 512 | 94 | 510 | 1.55e-103 | 322 |
MS.gene44855.t1 | AT2G29650 | 40.250 | 400 | 232 | 2 | 113 | 512 | 6 | 398 | 3.37e-98 | 305 |
MS.gene44855.t1 | AT2G29650 | 40.506 | 395 | 228 | 2 | 118 | 512 | 1 | 388 | 1.12e-97 | 303 |
MS.gene44855.t1 | AT2G29650 | 40.895 | 313 | 177 | 2 | 87 | 399 | 94 | 398 | 1.19e-73 | 241 |
MS.gene44855.t1 | AT5G20380 | 32.847 | 411 | 256 | 5 | 96 | 498 | 97 | 495 | 2.41e-64 | 219 |
MS.gene44855.t1 | AT5G20380 | 32.847 | 411 | 256 | 5 | 96 | 498 | 149 | 547 | 8.53e-64 | 219 |
MS.gene44855.t1 | AT5G44370 | 30.394 | 431 | 283 | 8 | 96 | 515 | 8 | 432 | 3.87e-55 | 192 |
Find 155 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGATTTCTCGTGAACTTTC+AGG | 0.171662 | 5.2:-58805649 | MS.gene44855:intron |
GGAACACTTGCTGCTATAAT+TGG | 0.202615 | 5.2:-58805001 | MS.gene44855:CDS |
CAGAGGTGCCATTGGAAAAT+TGG | 0.219285 | 5.2:+58809602 | None:intergenic |
TTGGTTTGTCTGGGTTTCTT+TGG | 0.242510 | 5.2:-58807210 | MS.gene44855:CDS |
CGCTTTCTCTGGGATTGTTC+AGG | 0.243630 | 5.2:-58809338 | MS.gene44855:intron |
GGTTGGACTCGCGCTTTCTC+TGG | 0.250441 | 5.2:-58809349 | MS.gene44855:CDS |
TGCTGCAGAGACTTCCCTTT+TGG | 0.259420 | 5.2:-58808151 | MS.gene44855:CDS |
CCTTACTGAGTTGAAGTATA+TGG | 0.266991 | 5.2:+58806664 | None:intergenic |
GAGTATGGTGCGGTGGCTTT+TGG | 0.271975 | 5.2:+58809681 | None:intergenic |
GGTCCTGGGGTTAGCCTCAT+TGG | 0.280489 | 5.2:-58805750 | MS.gene44855:CDS |
GGGTATTTGCTTTCACCTAT+AGG | 0.295947 | 5.2:-58808264 | MS.gene44855:CDS |
TGAACTACCTTGCTGGCTTT+TGG | 0.308899 | 5.2:-58806481 | MS.gene44855:CDS |
CTGCAAACGCCATGCATAGC+TGG | 0.327776 | 5.2:-58807006 | MS.gene44855:CDS |
GGTTTCTTTGGGTGTTGGTC+TGG | 0.335196 | 5.2:-58807198 | MS.gene44855:CDS |
ATGTCGCAAGGCGGTATATT+TGG | 0.340618 | 5.2:-58807247 | MS.gene44855:CDS |
GCCTTTGGCTTGAAATCCTT+TGG | 0.344433 | 5.2:-58805678 | MS.gene44855:CDS |
GTTCCTTTATCTGTCGCTAA+TGG | 0.349256 | 5.2:-58809370 | MS.gene44855:CDS |
CAACCATTAGCGACAGATAA+AGG | 0.362899 | 5.2:+58809367 | None:intergenic |
GTCTGGGTTTCTTTGGGTGT+TGG | 0.364306 | 5.2:-58807203 | MS.gene44855:CDS |
TGGTTTGTCTGGGTTTCTTT+GGG | 0.370638 | 5.2:-58807209 | MS.gene44855:CDS |
GCCCTTGCCCGTTCAGTTTG+AGG | 0.373252 | 5.2:+58807337 | None:intergenic |
GCTTGGCTAACATTAGCCTT+TGG | 0.378702 | 5.2:-58805693 | MS.gene44855:CDS |
CTTGGTTTAGTGCCGTTCCA+TGG | 0.378789 | 5.2:-58806520 | MS.gene44855:CDS |
GAGATCGCACCACAGTATTC+TGG | 0.387993 | 5.2:-58805536 | MS.gene44855:CDS |
TAGAGTATAGGCAGTAGAAA+AGG | 0.395049 | 5.2:+58804891 | None:intergenic |
CTCTTTCTCCTGTAGAGTAT+AGG | 0.398745 | 5.2:+58804879 | None:intergenic |
TCGTTATAACAGCGATGTTA+CGG | 0.400343 | 5.2:-58802815 | MS.gene44855:CDS |
TTGAGGCTGGTGGTTCAATC+AGG | 0.401732 | 5.2:-58802847 | MS.gene44855:CDS |
TGAGTGGAAGTTGGAGAGTA+TGG | 0.408735 | 5.2:+58809666 | None:intergenic |
GTTGTTGTTGTTTGTGTTGG+TGG | 0.418198 | 5.2:+58809506 | None:intergenic |
TGTCCGTGCTTTGCTTGGTC+TGG | 0.418503 | 5.2:-58808118 | MS.gene44855:CDS |
CGTGTTTGTGTTTGCGTTTG+AGG | 0.418557 | 5.2:-58802864 | MS.gene44855:CDS |
GCTATCATGAACTACCTTGC+TGG | 0.423028 | 5.2:-58806488 | MS.gene44855:CDS |
CTTGCTGTCCGTGCTTTGCT+TGG | 0.424049 | 5.2:-58808123 | MS.gene44855:CDS |
AAGGGAGCGGAGAGAGGCAG+AGG | 0.426022 | 5.2:+58809585 | None:intergenic |
GCTCATTCACTGCAGTCCAT+TGG | 0.433703 | 5.2:-58805780 | MS.gene44855:intron |
GAAGTTGTTGTTGTTTGTGT+TGG | 0.434792 | 5.2:+58809503 | None:intergenic |
GCTGTTGGAATTTCGATGGC+TGG | 0.440401 | 5.2:-58807316 | MS.gene44855:CDS |
TGGCAAAGTGGTAATGGCTT+GGG | 0.443751 | 5.2:-58808214 | MS.gene44855:CDS |
CTATGGTGGCAAAGTGGTAA+TGG | 0.445558 | 5.2:-58808220 | MS.gene44855:CDS |
AGGTATATCATGTGGATCTC+AGG | 0.445867 | 5.2:-58806550 | MS.gene44855:CDS |
AGTGGTGGCGATGCTCGCTT+TGG | 0.452450 | 5.2:-58809440 | MS.gene44855:CDS |
GTTGGACTCGCGCTTTCTCT+GGG | 0.453943 | 5.2:-58809348 | MS.gene44855:CDS |
AAAGGGCAGCAAGAAAATAT+AGG | 0.454954 | 5.2:+58804909 | None:intergenic |
GAACGCGTGAGGTTGAGTTT+TGG | 0.455642 | 5.2:+58809643 | None:intergenic |
TTGAAATCCTTTGGTCACTC+TGG | 0.459693 | 5.2:-58805669 | MS.gene44855:CDS |
CACGGAGGCGGAGAAGGGAG+CGG | 0.461840 | 5.2:+58809572 | None:intergenic |
CTTACTGAGTTGAAGTATAT+GGG | 0.464041 | 5.2:+58806665 | None:intergenic |
ACTGAACGGGCAAGGGCTGT+TGG | 0.465381 | 5.2:-58807331 | MS.gene44855:CDS |
TAGGTCCGGTGGCTCATTGT+GGG | 0.465606 | 5.2:-58802888 | MS.gene44855:CDS |
GAGAGAGGCAGAGGTGCCAT+TGG | 0.472557 | 5.2:+58809594 | None:intergenic |
CTTTATCTGTCGCTAATGGT+TGG | 0.473202 | 5.2:-58809366 | MS.gene44855:CDS |
ACCAACATTCCTCCACCTAT+AGG | 0.473248 | 5.2:+58808249 | None:intergenic |
ACCGCCTTGCGACATGAGAA+TGG | 0.474302 | 5.2:+58807255 | None:intergenic |
ACCCCTCAGTTGCTTCTGCT+TGG | 0.475369 | 5.2:-58805710 | MS.gene44855:CDS |
TTAACTTTCTTTGCCTCCAC+AGG | 0.476777 | 5.2:+58807085 | None:intergenic |
TTGGTTTAGTGCCGTTCCAT+GGG | 0.479267 | 5.2:-58806519 | MS.gene44855:CDS |
TTCTACTGCCTATACTCTAC+AGG | 0.479860 | 5.2:-58804887 | MS.gene44855:CDS |
TTTCAGCTTGGATGTGCGAT+AGG | 0.482350 | 5.2:-58807292 | MS.gene44855:CDS |
GCGGAGAAGGGAGCGGAGAG+AGG | 0.488710 | 5.2:+58809579 | None:intergenic |
TTTGTGTTTGCGTTTGAGGC+TGG | 0.489794 | 5.2:-58802860 | MS.gene44855:CDS |
ATGGTTTCCTCAAACTGAAC+GGG | 0.489867 | 5.2:-58807344 | MS.gene44855:CDS |
TTCCTCAAACTGAACGGGCA+AGG | 0.491223 | 5.2:-58807339 | MS.gene44855:CDS |
AGTGGTAATGGCTTGGGGTG+TGG | 0.493686 | 5.2:-58808208 | MS.gene44855:CDS |
GGACAGCAAGTAAAGCCAAA+AGG | 0.496066 | 5.2:+58808136 | None:intergenic |
TGAGTTGAACTGAGCGTCGT+TGG | 0.497033 | 5.2:+58809543 | None:intergenic |
GCTTTGCTTGGTCTGGCTGA+AGG | 0.500123 | 5.2:-58808111 | MS.gene44855:CDS |
ACCTATAGGTGGAGGAATGT+TGG | 0.502436 | 5.2:-58808250 | MS.gene44855:CDS |
TGCAAACGCCATGCATAGCT+GGG | 0.502609 | 5.2:-58807005 | MS.gene44855:intron |
GCTGCTATAATTGGAACAGT+TGG | 0.504312 | 5.2:-58804992 | MS.gene44855:CDS |
AAGAAACACGGAGGCGGAGA+AGG | 0.506280 | 5.2:+58809566 | None:intergenic |
GGGTAATGTTGGTGGTTTAG+CGG | 0.507274 | 5.2:+58809702 | None:intergenic |
ATAATTGGAACAGTTGGAGC+TGG | 0.507919 | 5.2:-58804986 | MS.gene44855:CDS |
GACAGCAAGTAAAGCCAAAA+GGG | 0.510055 | 5.2:+58808137 | None:intergenic |
GGAATGTTGGTGGATAACTA+TGG | 0.515203 | 5.2:-58808237 | MS.gene44855:CDS |
TCCTCAAACTGAACGGGCAA+GGG | 0.516195 | 5.2:-58807338 | MS.gene44855:CDS |
TGGCTTGGGGTGTGGCATTG+TGG | 0.517703 | 5.2:-58808200 | MS.gene44855:CDS |
TCAGATATCAAAATATGAGC+TGG | 0.520475 | 5.2:-58807140 | MS.gene44855:CDS |
GTGGCAAAGTGGTAATGGCT+TGG | 0.521444 | 5.2:-58808215 | MS.gene44855:CDS |
GGCAAAGTGGTAATGGCTTG+GGG | 0.524292 | 5.2:-58808213 | MS.gene44855:CDS |
GGCTGGTGGTTCAATCAGGA+TGG | 0.524865 | 5.2:-58802843 | MS.gene44855:CDS |
CCGCCTTGCGACATGAGAAT+GGG | 0.526447 | 5.2:+58807256 | None:intergenic |
CAGATCTATCGTCTTCGCAC+CGG | 0.526549 | 5.2:-58802615 | MS.gene44855:CDS |
ATCTATCGTCTTCGCACCGG+TGG | 0.526715 | 5.2:-58802612 | MS.gene44855:CDS |
TTGCTTTCACCTATAGGTGG+AGG | 0.527774 | 5.2:-58808258 | MS.gene44855:CDS |
AGGGAAGTCTCTGCAGCAAA+GGG | 0.528499 | 5.2:+58808156 | None:intergenic |
GGTTGCTCCGCCGAAAATGA+TGG | 0.530785 | 5.2:+58809726 | None:intergenic |
TGCCGTTCCATGGGTTGTGA+TGG | 0.531447 | 5.2:-58806510 | MS.gene44855:CDS |
AAGGGAAGTCTCTGCAGCAA+AGG | 0.533373 | 5.2:+58808155 | None:intergenic |
TATTTGCTTTCACCTATAGG+TGG | 0.534223 | 5.2:-58808261 | MS.gene44855:CDS |
CACGACCCACAATGAGCCAC+CGG | 0.536246 | 5.2:+58802883 | None:intergenic |
GTAGGAATGGCAAATACTGC+TGG | 0.539160 | 5.2:-58805022 | MS.gene44855:intron |
TTCAGCTTGGATGTGCGATA+GGG | 0.540655 | 5.2:-58807291 | MS.gene44855:CDS |
TGGATCTCAGGCAAGCAGCT+TGG | 0.542287 | 5.2:-58806538 | MS.gene44855:CDS |
AGAGTATAGGCAGTAGAAAA+GGG | 0.544393 | 5.2:+58804892 | None:intergenic |
AGAAACACGGAGGCGGAGAA+GGG | 0.545254 | 5.2:+58809567 | None:intergenic |
GATATCTGAGGACTTCGGTC+GGG | 0.546418 | 5.2:+58807154 | None:intergenic |
GCATGAATAACATGGTGGCC+AGG | 0.547555 | 5.2:-58808074 | MS.gene44855:intron |
TCGATGGCTGGATTTCAGCT+TGG | 0.549464 | 5.2:-58807304 | MS.gene44855:CDS |
GAGCTAGTTGGTTCATTCCG+AGG | 0.550210 | 5.2:-58804953 | MS.gene44855:CDS |
ATTGACTCGTAAGATTATGC+AGG | 0.555441 | 5.2:-58806423 | MS.gene44855:intron |
AAGGGCTGTTGGAATTTCGA+TGG | 0.561576 | 5.2:-58807320 | MS.gene44855:CDS |
TCTCCCATTCTCATGTCGCA+AGG | 0.564637 | 5.2:-58807259 | MS.gene44855:CDS |
GAAAGTAAGCGTCTGAAAGG+AGG | 0.565154 | 5.2:+58807055 | None:intergenic |
CTAGGTCCGGTGGCTCATTG+TGG | 0.566442 | 5.2:-58802889 | MS.gene44855:intron |
TTTGAAAGTAAGCGTCTGAA+AGG | 0.567422 | 5.2:+58807052 | None:intergenic |
TCGGAAATGGTGAACGCGTG+AGG | 0.567551 | 5.2:+58809632 | None:intergenic |
TACTTTCAAAGATGCCAACA+TGG | 0.572670 | 5.2:-58807039 | MS.gene44855:CDS |
GTGTTTGCGTTTGAGGCTGG+TGG | 0.573091 | 5.2:-58802857 | MS.gene44855:CDS |
ACCAAAGGATTTCAAGCCAA+AGG | 0.574114 | 5.2:+58805677 | None:intergenic |
TATCAACAACACGGACCCAC+CGG | 0.575386 | 5.2:+58802596 | None:intergenic |
AAAGTAAGCGTCTGAAAGGA+GGG | 0.577273 | 5.2:+58807056 | None:intergenic |
ATGATAGCCATCACAACCCA+TGG | 0.591261 | 5.2:+58806503 | None:intergenic |
CGTTGGAAGAAACACGGAGG+CGG | 0.593444 | 5.2:+58809560 | None:intergenic |
CCCAGGACCAACAAAACCAA+TGG | 0.594055 | 5.2:+58805764 | None:intergenic |
GCCACCATGTTATTCATGCA+AGG | 0.595628 | 5.2:+58808078 | None:intergenic |
TATAGGTGGAGGAATGTTGG+TGG | 0.598602 | 5.2:-58808247 | MS.gene44855:CDS |
TCCGCCGAAAATGATGGCGG+AGG | 0.602078 | 5.2:+58809732 | None:intergenic |
GATGGTTTCCTCAAACTGAA+CGG | 0.605328 | 5.2:-58807345 | MS.gene44855:CDS |
AGCCATCACAACCCATGGAA+CGG | 0.607117 | 5.2:+58806508 | None:intergenic |
CAGTATTCTGGTGTTATACA+CGG | 0.607350 | 5.2:-58805524 | MS.gene44855:intron |
AAGCATTACCCAGCTATGCA+TGG | 0.612596 | 5.2:+58806997 | None:intergenic |
TGATATCTGAGGACTTCGGT+CGG | 0.614020 | 5.2:+58807153 | None:intergenic |
AGCGACAGATAAAGGAACAA+TGG | 0.618871 | 5.2:+58809375 | None:intergenic |
AGCCAAGCAGAAGCAACTGA+GGG | 0.619076 | 5.2:+58805708 | None:intergenic |
CACTTCTGAACGAGTCAAAG+TGG | 0.620499 | 5.2:-58809458 | MS.gene44855:CDS |
TCTTCCTTGCATGAATAACA+TGG | 0.629861 | 5.2:-58808082 | MS.gene44855:CDS |
TCTATCGTCTTCGCACCGGT+GGG | 0.630879 | 5.2:-58802611 | MS.gene44855:CDS |
TCCCATATAGGTATATCATG+TGG | 0.631161 | 5.2:-58806558 | MS.gene44855:intron |
GTGATGAACTCAGTGAAACT+CGG | 0.632885 | 5.2:+58809478 | None:intergenic |
TATCTGACCAAAAGCCAGCA+AGG | 0.634373 | 5.2:+58806474 | None:intergenic |
GCAGCGATTAGAGACCATGT+TGG | 0.635792 | 5.2:+58807025 | None:intergenic |
CAGCCAGACCAAGCAAAGCA+CGG | 0.641798 | 5.2:+58808115 | None:intergenic |
TAATGTTGGTGGTTTAGCGG+CGG | 0.642538 | 5.2:+58809705 | None:intergenic |
TAGCCAAGCAGAAGCAACTG+AGG | 0.650053 | 5.2:+58805707 | None:intergenic |
CCCATTCTCATGTCGCAAGG+CGG | 0.664754 | 5.2:-58807256 | MS.gene44855:CDS |
AAACCAATGAGGCTAACCCC+AGG | 0.666606 | 5.2:+58805747 | None:intergenic |
AGTTGGAGAGTATGGTGCGG+TGG | 0.674019 | 5.2:+58809674 | None:intergenic |
TTCTGAACGAGTCAAAGTGG+TGG | 0.680019 | 5.2:-58809455 | MS.gene44855:CDS |
TCGCAGTAGCTAAACCAATG+AGG | 0.685110 | 5.2:+58805736 | None:intergenic |
TGCTCCGCCGAAAATGATGG+CGG | 0.686657 | 5.2:+58809729 | None:intergenic |
TCAGATATGATGATACAAAG+TGG | 0.691862 | 5.2:-58806458 | MS.gene44855:CDS |
GAGAAATCCAGAGTGACCAA+AGG | 0.692248 | 5.2:+58805662 | None:intergenic |
CGCGACGGATATCAACAACA+CGG | 0.696245 | 5.2:+58802587 | None:intergenic |
CGTGTTGTTGATATCCGTCG+CGG | 0.699215 | 5.2:-58802586 | MS.gene44855:CDS |
GCCAAGCAGAAGCAACTGAG+GGG | 0.703992 | 5.2:+58805709 | None:intergenic |
GGATAACTATGGTGGCAAAG+TGG | 0.708063 | 5.2:-58808226 | MS.gene44855:CDS |
GAGCGTCGTTGGAAGAAACA+CGG | 0.710920 | 5.2:+58809554 | None:intergenic |
TCCTTGCATGAATAACATGG+TGG | 0.712615 | 5.2:-58808079 | MS.gene44855:CDS |
CGACACTAGAATAACCGCGA+CGG | 0.718553 | 5.2:+58802572 | None:intergenic |
ATGTTGGTGGATAACTATGG+TGG | 0.730881 | 5.2:-58808234 | MS.gene44855:CDS |
AGCGATGTTACGGATCTCTG+TGG | 0.732670 | 5.2:-58802805 | MS.gene44855:CDS |
GGAAGTTGGAGAGTATGGTG+CGG | 0.748375 | 5.2:+58809671 | None:intergenic |
TGTATAACACCAGAATACTG+TGG | 0.748590 | 5.2:+58805527 | None:intergenic |
CGTCGTTGGAAGAAACACGG+AGG | 0.798020 | 5.2:+58809557 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 58802567 | 58809758 | 58802567 | ID=MS.gene44855 |
chr5.2 | mRNA | 58802567 | 58809758 | 58802567 | ID=MS.gene44855.t1;Parent=MS.gene44855 |
chr5.2 | exon | 58809339 | 58809758 | 58809339 | ID=MS.gene44855.t1.exon1;Parent=MS.gene44855.t1 |
chr5.2 | CDS | 58809339 | 58809758 | 58809339 | ID=cds.MS.gene44855.t1;Parent=MS.gene44855.t1 |
chr5.2 | exon | 58808075 | 58808301 | 58808075 | ID=MS.gene44855.t1.exon2;Parent=MS.gene44855.t1 |
chr5.2 | CDS | 58808075 | 58808301 | 58808075 | ID=cds.MS.gene44855.t1;Parent=MS.gene44855.t1 |
chr5.2 | exon | 58807006 | 58807366 | 58807006 | ID=MS.gene44855.t1.exon3;Parent=MS.gene44855.t1 |
chr5.2 | CDS | 58807006 | 58807366 | 58807006 | ID=cds.MS.gene44855.t1;Parent=MS.gene44855.t1 |
chr5.2 | exon | 58806670 | 58806714 | 58806670 | ID=MS.gene44855.t1.exon4;Parent=MS.gene44855.t1 |
chr5.2 | CDS | 58806670 | 58806714 | 58806670 | ID=cds.MS.gene44855.t1;Parent=MS.gene44855.t1 |
chr5.2 | exon | 58806424 | 58806570 | 58806424 | ID=MS.gene44855.t1.exon5;Parent=MS.gene44855.t1 |
chr5.2 | CDS | 58806424 | 58806570 | 58806424 | ID=cds.MS.gene44855.t1;Parent=MS.gene44855.t1 |
chr5.2 | exon | 58805650 | 58805787 | 58805650 | ID=MS.gene44855.t1.exon6;Parent=MS.gene44855.t1 |
chr5.2 | CDS | 58805650 | 58805787 | 58805650 | ID=cds.MS.gene44855.t1;Parent=MS.gene44855.t1 |
chr5.2 | exon | 58805525 | 58805558 | 58805525 | ID=MS.gene44855.t1.exon7;Parent=MS.gene44855.t1 |
chr5.2 | CDS | 58805525 | 58805558 | 58805525 | ID=cds.MS.gene44855.t1;Parent=MS.gene44855.t1 |
chr5.2 | exon | 58804861 | 58805040 | 58804861 | ID=MS.gene44855.t1.exon8;Parent=MS.gene44855.t1 |
chr5.2 | CDS | 58804861 | 58805040 | 58804861 | ID=cds.MS.gene44855.t1;Parent=MS.gene44855.t1 |
chr5.2 | exon | 58802794 | 58802907 | 58802794 | ID=MS.gene44855.t1.exon9;Parent=MS.gene44855.t1 |
chr5.2 | CDS | 58802794 | 58802907 | 58802794 | ID=cds.MS.gene44855.t1;Parent=MS.gene44855.t1 |
chr5.2 | exon | 58802567 | 58802634 | 58802567 | ID=MS.gene44855.t1.exon10;Parent=MS.gene44855.t1 |
chr5.2 | CDS | 58802567 | 58802634 | 58802567 | ID=cds.MS.gene44855.t1;Parent=MS.gene44855.t1 |
Gene Sequence |
Protein sequence |